#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTC-AAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTCATGAACC-GCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTCATGAACCGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTCATGAACCGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTCATGAACCGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTCATGAACCGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTCATGAACCGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTCATGAACCGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTCATGAACCGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg #### 1700055N04Rik_ID228_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACAC-AAATTTGACTATATCTTCTTCACAg aagagacttgcctcctgagttgtctccatcttcatttgtttttgttttagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGACAACTTCTAGAGCACCAAATTTG-CTATATCTTTTTCACAggtgaggagggccctgttgagaaccatcaactgagtgatatattataataa Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aagagacttgcctcctgagttgtctccatcttcatttgtttttgttttagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGACAACTTCTAGAGCACCAAATTTGCTATATCTTTTTCACAggtgaggagggccctgttgagaaccatcaactgagtgatatattataataa Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagagacttgcctcctgagttgtctccatcttcatttgtttttgttttagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGACAACTTCTAGAGCACCAAATTTGCTATATCTTTTTCACAGgtgaggagggccctgttgagaaccatcaactgagtgatatattataataa Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagagacttgcctcctgagttgtctccatcttcatttgtttttgttttagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGACAACTTCTAGAGCACCAAATTTGCTATATCTTTTTCACAGgtgaggagggccctgttgagaaccatcaactgagtgatatattataataa Alignment from Pairagon AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagagacttgcctcctgagttgtctccatcttcatttgtttttgttttagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGACAACTTCTAGAGCACCAAATTTGCTATATCTTTTTCACAGgtgaggagggccctgttgagaaccatcaactgagtgatatattataataa Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagagacttgcctcctgagttgtctccatcttcatttgtttttgttttagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGACAACTTCTAGAGCACCAAATTTGCTATATCTTTTTCACAGgtgaggagggccctgttgagaaccatcaactgagtgatatattataataa Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagagacttgcctcctgagttgtctccatcttcatttgtttttgttttagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGACAACTTCTAGAGCACCAAATTTGCTATATCTTTTTCACAGgtgaggagggccctgttgagaaccatcaactgagtgatatattataataa Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagagacttgcctcctgagttgtctccatcttcatttgtttttgttttagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGACAACTTCTAGAGCACCAAATTTGCTATATCTTTTTCACAGgtgaggagggccctgttgagaaccatcaactgagtgatatattataataa #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTA-TTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTACTTAA-TAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTACTTAATAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTACTTAATAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGCGTCC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTACTTAATAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCGTAGgtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTACTTAATAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTACTTAATAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTACTTAATAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTACTTAATAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTC-TTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg actacagttggccgagtgagcccttttcacagctttgcttggttctgcagg---TGCTCCCGTGCGAACATTACACTATCTGGGAAGAAGCGCAGGAAACTACTTGCAGCAGA-CCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAggttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg actacagttggccgagtgagcccttttcacagctttgcttggttctgcaggTGC---TCCCGTGCGAACATTACACTATCTGGGAAGAAGCGCAGGAAACTACTTGCAGCAGACCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAggttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcagGTGCTCC---CGTGCGAACATTACACTATCTGGGAAGAAGCGCAGGAAACTACTTGCAGCAGACCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcagGT---GCTCCCGTGCGAACATTACACTATCTGGGAAGAAGCGCAGGAAACTACTTGCAGCAGACCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Pairagon GTCCAGTGCT--CGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACT-CTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcag-----GTGCTCCCGTGCGAACATTACACTATCTGGGAAGAAGCGCAGGAAACTACTTGCAGCAGA-CCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Exonerate_protein2genome CAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcagGTGCTCCCGTGCGAACATTACACTATCTGGGAAGAAGCGCAGGAAACTACTTGCAGCAGACCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Exonerate_coding2genome CAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcagGTGCTCCCGTGCGAACATTACACTATCTGGGAAGAAGCGCAGGAAACTACTTGCAGCAGACCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcagGTGCTCC---CGTGCGAACATTACACTATCTGGGAAGAAGCGCAGGAAACTACTTGCAGCAGACCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac #### 2010012O05Rik_ID10003_2 --> 0 - 0 Original Alignment CTGCTGGGGCAGGCAGCTCGAAAC-ATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACCATGG-ACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from CESAR CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACCATGGACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Spaln_aa2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACCATGGACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Spaln_nt2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACCATGGACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Pairagon CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACCATGGACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Exonerate_protein2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACCATGGACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Exonerate_coding2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACCATGGACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from GeneWise CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACCATGGACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg #### 2010012O05Rik_ID10004_3 --> 0 - 2 Original Alignment AGTTTAAGGAAGATGGCAATA-ATAACAACACACCTTCAGTACca tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCAATACATAACAA-GCACTTACAGTACcagtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from CESAR AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACca tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCAATACATAACAAGCACTTACAGTACcagtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from Spaln_aa2Genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCA tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCAATACATAACAAGCACTTACAGTACCAgtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from Spaln_nt2Genome AGTTTAAGGAAGATGGCAATA-ATAACAACACACCTTCAGTACCA tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCAATACATAACAA-GCACTTACAGTACCAgtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from Pairagon AGTTTAAGGAAGATGGCAATA-ATAACAACACACCTTCAGTACCA tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCAATACATAACAA-GCACTTACAGTACCAgtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from Exonerate_protein2genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAA tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCAATACATAACAAGCACTTACAGTACCAGTATGGATGCTTGGTCAAgtgggcggtggatggaggtagaaggggcattg Alignment from Exonerate_coding2genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAA tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCAATACATAACAAGCACTTACAGTACCAGTATGGATGCTTGGTCAAgtgggcggtggatggaggtagaaggggcattg Alignment from GeneWise tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagagtttgaggaagatggcaatacataacaagcacttacagtaccagtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAG-CTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGGG-TACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGGGTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGGGTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGC-TCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAG-GGTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGGGTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGGGTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGGGTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGGGTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAAT-AAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg taaagaaagtggagtgaaatctgccaagaccatttgcttatctattacagttACCCCAGTTATAGAGCAGGGGAATCAAGAAGC-CCGTGGCCAAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGACCCAggtaatttgaatattgggggtgacagctgtgaaaataactcaagcataaag Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg taaagaaagtggagtgaaatctgccaagaccatttgcttatctattacagttACCCCAGTTATAGAGCAGGGGAATCAAGAAGCCCGTGGCCAAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGACCCAggtaatttgaatattgggggtgacagctgtgaaaataactcaagcataaag Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG taaagaaagtggagtgaaatctgccaagaccatttgcttatctattacagTTACCCCAGTTATAGAGCAGGGGAATCAAGAAGCCCGTGGCCAAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGACCCAGgtaatttgaatattgggggtgacagctgtgaaaataactcaagcataaag Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG taaagaaagtggagtgaaatctgccaagaccatttgcttatctattacagTTACCCCAGTTATAGAGCAGGGGAATCAAGAAGCCCGTGGCCAAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGACCCAGgtaatttgaatattgggggtgacagctgtgaaaataactcaagcataaag Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG taaagaaagtggagtgaaatctgccaagaccatttgcttatctattacagTTACCCCAGTTATAGAGCAGGGGAATCAAGAAGCCCGTGGCCAAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGACCCAGgtaatttgaatattgggggtgacagctgtgaaaataactcaagcataaag Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG taaagaaagtggagtgaaatctgccaagaccatttgcttatctattacagTTACCCCAGTTATAGAGCAGGGGAATCAAGAAGCCCGTGGCCAAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGACCCAGgtaatttgaatattgggggtgacagctgtgaaaataactcaagcataaag Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG taaagaaagtggagtgaaatctgccaagaccatttgcttatctattacagTTACCCCAGTTATAGAGCAGGGGAATCAAGAAGCCCGTGGCCAAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGACCCAGgtaatttgaatattgggggtgacagctgtgaaaataactcaagcataaag Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG taaagaaagtggagtgaaatctgccaagaccatttgcttatctattacagTTACCCCAGTTATAGAGCAGGGGAATCAAGAAGCCCGTGGCCAAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGACCCAGgtaatttgaatattgggggtgacagctgtgaaaataactcaagcataaag #### Acsl5_ID11602_7 --> 0 - 0 Original Alignment AATATAGGCAAAGAG-AACTTCAAAAAACCAGTG ctagccatctttaatgattctttttggtccttccttccctcctgccttagAATATAGGCAAAGAGCAACT-CAAGAAACCAGTGgtaagtagtatttctgctaattttgagctgcttctggccctccgtgattc Alignment from CESAR AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctagccatctttaatgattctttttggtccttccttccctcctgccttagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgtaagtagtatttctgctaattttgagctgcttctggccctccgtgattc Alignment from Spaln_aa2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctagccatctttaatgattctttttggtccttccttccctcctgccttagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgtaagtagtatttctgctaattttgagctgcttctggccctccgtgattc Alignment from Spaln_nt2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctagccatctttaatgattctttttggtccttccttccctcctgccttagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgtaagtagtatttctgctaattttgagctgcttctggccctccgtgattc Alignment from Pairagon AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctagccatctttaatgattctttttggtccttccttccctcctgccttagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgtaagtagtatttctgctaattttgagctgcttctggccctccgtgattc Alignment from Exonerate_protein2genome ctagccatctttaatgattctttttggtccttccttccctcctgccttagaatataggcaaagagcaactcaagaaaccagtggtaagtagtatttctgctaattttgagctgcttctggccctccgtgattc Alignment from Exonerate_coding2genome ctagccatctttaatgattctttttggtccttccttccctcctgccttagaatataggcaaagagcaactcaagaaaccagtggtaagtagtatttctgctaattttgagctgcttctggccctccgtgattc Alignment from GeneWise AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctagccatctttaatgattctttttggtccttccttccctcctgccttagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgtaagtagtatttctgctaattttgagctgcttctggccctccgtgattc #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGG-AAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGCAAGGAGGGCG-CTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGCAAGGAGGGCGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGCAAGGAGGGCGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGCAAGGAGGGCGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGCAAGGAGGGCGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGCAAGGAGGGCGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGCAAGGAGGGCGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGCAAGGAGGGCGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTG-GAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGCGAGGAGCAGA-GGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGCGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGCGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGCGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTG-GAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGCGAGGAGCAGA-GGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGCGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGCGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGCGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAG-CTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aaggtcagcagtctgagaagaatctggaggtgtctgtggctctgttacagAAGATGGAGAAGCCTCCTGG-GACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtaagcggatacactaggcagggagtctttggatgcacttgtggtctata Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aaggtcagcagtctgagaagaatctggaggtgtctgtggctctgttacagAAGATGGAGAAGCCTCCTGGGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtaagcggatacactaggcagggagtctttggatgcacttgtggtctata Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aaggtcagcagtctgagaagaatctggaggtgtctgtggctctgttacagAAGATGGAGAAGCCTCCTGGGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtaagcggatacactaggcagggagtctttggatgcacttgtggtctata Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aaggtcagcagtctgagaagaatctggaggtgtctgtggctctgttacagAAGATGGAGAAGCCTCCTGGGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtaagcggatacactaggcagggagtctttggatgcacttgtggtctata Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aaggtcagcagtctgagaagaatctggaggtgtctgtggctctgttacagAAGATGGAGAAGCCTCCTGGGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtaagcggatacactaggcagggagtctttggatgcacttgtggtctata Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aaggtcagcagtctgagaagaatctggaggtgtctgtggctctgttacagAAGATGGAGAAGCCTCCTGGGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtaagcggatacactaggcagggagtctttggatgcacttgtggtctata Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aaggtcagcagtctgagaagaatctggaggtgtctgtggctctgttacagAAGATGGAGAAGCCTCCTGGGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtaagcggatacactaggcagggagtctttggatgcacttgtggtctata Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aaggtcagcagtctgagaagaatctggaggtgtctgtggctctgttacagAAGATGGAGAAGCCTCCTGGGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtaagcggatacactaggcagggagtctttggatgcacttgtggtctata #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACC-ATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACACATCATCCTCC-TTTTGCCATTCAGGACATCTCTGTAGAAggtaaggtgatgcaaagtgcatcagtcaggccagatcatcactgcacccca Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACACATCATCCTCCTTTTGCCATTCAGGACATCTCTGTAGAAggtaaggtgatgcaaagtgcatcagtcaggccagatcataagtgtatcttt Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACACATCATCCTCCTTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatcactgcacccca Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACACATCATCCTCCTTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatcactgcacccca Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGAC-CATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACACATCATCCTCC-TTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatcactgcacccca Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACACATCATCCTCCTTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatcactgcacccca Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACACATCATCCTCCTTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatcactgcacccca Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAA--------------------------------------------------- aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACACATCATCCTCCTTTTGCCATTCAGGACATCTCTGTAGAAGGTAAGGTGATGCAAAGTGCATCAGTCAGGCCAGATCATCACTGCACCCCA #### Actr1a_ID9872_8 --> 0 - 1 Original Alignment ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGC-GAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTCGAGGAGA-CGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAggtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from CESAR ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTCGAGGAGACGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAggtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Spaln_aa2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTCGAGGAGACGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Spaln_nt2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTCGAGGAGACGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Pairagon ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGG-CGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTCGAGGAGA-CGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Exonerate_protein2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTCGAGGAGACGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Exonerate_coding2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTCGAGGAGACGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from GeneWise ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTCGAGGAGACGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAAC-TTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcaggcATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACCTTGGGAAGTG-GGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcaggcATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACCTTGGGAAGTGGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACCTTGGGAAGTGGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACCTTGGGAAGTGGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAA-CTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACCTTGGGAAGTG-GGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACCTTGGGAAGTGGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACCTTGGGAAGTGGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from GeneWise GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACCTTGGGAAGTGGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc #### Adrbk1_ID476_19 --> 0 - 0 Original Alignment CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGC-AAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCCAAGC-GTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from CESAR CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCCAAGCGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Spaln_aa2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCCAAGCGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Spaln_nt2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCCAAGCGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Pairagon CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCCAAGCGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Exonerate_protein2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCCAAGCGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Exonerate_coding2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCCAAGCGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from GeneWise CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCCAAGCGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGAC-TGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagacTATGCCTTGGGTAAGGACCTGCATAG-AGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCAT------GGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagacTATGCCTTGGGTAAGGAC------CTGCATAGAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACCTGCATAGAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGAC-TGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACCTGCATAGAG-ATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Pairagon ACTATGCCCTGGGTAAGGA-CTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACCTGCATAGAG-ATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACCTGCATAGAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACCTGCATAGAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACCTGCATAGAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGT-GACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg tgatgcctatgatctacctgtatcatcccggctgttccatcctcttacagTTACTGGACAGTCGACCAGGAGC-GTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGGCTTGAGGCACAACAA---GCCAAAAACAAACAGCTGGGTCAGGAGGAAggtgagcacatgccacccaccttagactgcaggagtgaaggctgacaagac Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg tgatgcctatgatctacctgtatcatcccggctgttccatcctcttacagTTACTGGACAGTCGACCAGGAGCGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGGCTTGAGGCACAA---CAAGCCAAAAACAAACAGCTGGGTCAGGAGGAAggtgagcacatgccacccaccttagactgcaggagtgaaggctgacaagac Alignment from Spaln_aa2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgatgcctatgatctacctgtatcatcccggctgttccatcctcttacagTTACTGGACAGTCGACCAGGAGCGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGGCTTGAGGCA---CAACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAAGgtgagcacatgccacccaccttagactgcaggagtgaaggctgacaagac Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgatgcctatgatctacctgtatcatcccggctgttccatcctcttacagTTACTGGACAGTCGACCAGGAGCGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGGCTTGAGGCAC--AACAA-GCCAAAAACAAACAGCTGGGTCAGGAGGAAGgtgagcacatgccacccaccttagactgcaggagtgaaggctgacaagac Alignment from Pairagon TTACTGGACAGT-GACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgatgcctatgatctacctgtatcatcccggctgttccatcctcttacagTTACTGGACAGTCGACCAGGAGC-GTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTT---TACCAGCAATGCTGAAACAGACCGGCTTGAGGCAC---AACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAAGgtgagcacatgccacccaccttagactgcaggagtgaaggctgacaagac Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgatgcctatgatctacctgtatcatcccggctgttccatcctcttacagTTACTGGACAGTCGACCAGGAGCGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGGCTTGAGGCA---CAACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAAGgtgagcacatgccacccaccttagactgcaggagtgaaggctgacaagac Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgatgcctatgatctacctgtatcatcccggctgttccatcctcttacagTTACTGGACAGTCGACCAGGAGCGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGGCTTGAGGCA---CAACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAAGgtgagcacatgccacccaccttagactgcaggagtgaaggctgacaagac Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgatgcctatgatctacctgtatcatcccggctgttccatcctcttacagTTACTGGACAGTCGACCAGGAGCGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGGCTTGAGGCACAACAA---GCCAAAAACAAACAGCTGGGTCAGGAGGAAGgtgagcacatgccacccaccttagactgcaggagtgaaggctgacaagac #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCA-CTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACCTGATCCCCC-ACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACCTGATCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACCTGATCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACCTGATCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACCTGATCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACCTGATCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACCTGATCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGTTACTGGACAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACCTGATCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGGCAAGTAACCTgtttagctcaggatcctgtgtctggatcctgaagctgag #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTG-GACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctaggGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGCGATTGGC-GATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from CESAR gGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctaggGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGCGATTGGCGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Spaln_aa2Genome -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGCGATTGGCGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTG-GACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGCGATTGGC-GATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Pairagon GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTG-GACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGCGATTGGC-GATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Exonerate_protein2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGCGATTGGCGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Exonerate_coding2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGCGATTGGCGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from GeneWise -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGCGATTGGCGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAG-AGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGCAGGGACA-CAACCGGAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGCAGGGACACAACCGGAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGCAGGGACACAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGCAGGGACACAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAG-AGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGCAGGGACA-CAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGCAGGGACACAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGCAGGGACACAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGCAGGGACACAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATT-GACCGCATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagcCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTCGACCGCA-GACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from CESAR aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagcCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTCGACCGCAGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Spaln_aa2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTCGACCGCAGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Spaln_nt2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATT-GACCGCATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTCGACCGCA-GACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Pairagon ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATT-GACCGCATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTCGACCGCA-GACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTCGACCGCAGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Exonerate_coding2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTCGACCGCAGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from GeneWise ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTCGACCGCAGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGC-CTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATGGCCATGTGAGAATCTCCGACTTGAGCCCTAGTATGTG-CTTCTCCAAGAAGAGGCCCCACGCTGGGgtgtaagtgcccacatattcacttcaaattttgtcttctctcctgcaggGGC Alignment from CESAR CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATGGCCATGTGAGAATCTCCGACTTGAGCCCTAGTATGTGCTTCTCCAAGAAGAGGCCCCACGCTGGGgtgtaagtgcccacatattcacttcattctttttttattttaaatcaggGGC Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATGGCCATGTGAGAATCTCCGACTTGAGCCCTAGTATGTGCTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcaaattttgtcttctctcctgcagGGGC Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATGGCCATGTGAGAATCTCCGACTTGAGCCCTAGTATGTGCTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcaaattttgtcttctctcctgcagGGGC Alignment from Pairagon CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGG-CCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATGGCCATGTGAGAATCTCCGACTTGAGCCCTAGTATGTG-CTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcaaattttgtcttctctcctgcagGGGC Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATGGCCATGTGAGAATCTCCGACTTGAGCCCTAGTATGTGCTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcaaattttgtcttctctcctgcagGGGC Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATGGCCATGTGAGAATCTCCGACTTGAGCCCTAGTATGTGCTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcaaattttgtcttctctcctgcagGGGC Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATGGCCATGTGAGAATCTCCGACTTGAGCCCTAGTATGTGCTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcaaattttgtcttctctcctgcagGGGC #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCT-GAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaaagtagtttaggggatggacacctgctctgtccctgcaggtGGGGAACTGCATTATCACTTATCACAGCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGCTCGATA-CATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtataatagtttaggggatggacacctgctctgtccctgcaggtGGGGAACTGCATTATCACTTATCACAGCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGCTCGATACATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaaagtagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAGCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGCTCGATACATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaaagtagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAGCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGCTCGATACATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaaagtagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAGCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGCTCGATACATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaaagtagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAGCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGCTCGATACATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaaagtagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAGCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGCTCGATACATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaaagtagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAGCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGCTCGATACATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGC-ATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCCATGT-ATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtataatagtttaggggatgcacctctgcctgcttcccataggtGGGGAA Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCCATGTATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtataatagtttaggggatggacacctgctctgtccctgcaggtGGGGAA Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCCATGTATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgcacctctgcctgcttcccatagGTGGGGAA Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGC-ATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCCATGT-ATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgcacctctgcctgcttcccatagGTGGGGAA Alignment from Pairagon GACTGCCCCTTCATCGTGTG-CATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCCATGT-ATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgcacctctgcctgcttcccatagGTGGGGAA Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCCATGTATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgcacctctgcctgcttcccatagGTGGGGAA Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCCATGTATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgcacctctgcctgcttcccatagGTGGGGAA Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCCATGTATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgcacctctgcctgcttcccatagGTGGGGAA #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGG-TTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagtGATAAGTTCACACATCTTCTGTCAGT-GAAGAATATTGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagtGATAAGTTCACACATCTTCTGTCAGTGAAGAATATTGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATCTTCTGTCAGTGAAGAATATTGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Spaln_nt2Genome TGACAAGTTCACACGG-TTCTGCCAGTGGAAGAATGTTGAGCTCAACATCC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATCTTCTGTCAGT-GAAGAATATTGAGCTCAACATCCatgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Pairagon TGACAAGTTCACACG-GTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATCTTCTGTCAGT-GAAGAATATTGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATCTTCTGTCAGTGAAGAATATTGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Exonerate_coding2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATCTTCTGTCAGTGAAGAATATTGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATCTTCTGTCAGTGAAGAATATTGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCC-AAGGGATTTATTCCAAAAGTTTATAGAGaggtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from CESAR CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCAAGGGATTTATTCCAAAAGTTTATAGAGaggtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCC-AAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Pairagon CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Exonerate_coding2genome ATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAGCCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG AGGCTGAGGCTTGCCAGATTGATTCACCGATTCTCTCCTGCCTGTTCTAGCCTTACATTGAGGAGATTTGTCAGCAAACTCCAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from GeneWise CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTG-CCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCCTC-AGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCCTCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCCTCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCCTCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Pairagon CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCCTCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCCTCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Exonerate_coding2genome atttactattccgttttctttgttcatagttttgtttttttttcccacagcccttttcacaaaacgctacagagcatgtgcaggcccaccttgtgaaaaagcaggtcccctcagatctgtttcaagtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCCTCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTG-GTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGAAGCTGGAGACAGAGGAGGAATGTGTGCGTCCGCA-CCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGAAGCTGGAGACAGAGGAGGAATGTGTGCGTCCGCACCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGAAGCTGGAGACAGAGGAGGAATGTGTGCGTCCGCACCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGAAGCTGGAGACAGAGGAGGAATGTGTGCGTCCGCACCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTG-GTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGAAGCTGGAGACAGAGGAGGAATGTGTGCGTCCGCA-CCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGAAGCTGGAGACAGAGGAGGAATGTGTGCGTCCGCACCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGAAGCTGGAGACAGAGGAGGAATGTGTGCGTCCGCACCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGAAGCTGGAGACAGAGGAGGAATGTGTGCGTCCGCACCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCT-GCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCA-TTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag #### Aip_ID331_4 --> 0 - 0 Original Alignment GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCC-ATCGCCTGCCTCAAGAATCTGCAGATGAAG aattggaacccataggcagggactggttagttttgtgtcttttctctaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATTCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCCATTGCATCCC-CAAGAATCTGCAAATGAAAgtatgtctcacagccacaatgggggggacatatgaagcacacatggctgc Alignment from CESAR GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG aattggaacccataggcagggactggttagttttgtgtcttttctctaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATTCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCCATTGCATCCCCAAGAATCTGCAAATGAAAgtatgtctcacagccacaatgggggggacatatgaagcacacatggctgc Alignment from Spaln_aa2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG aattggaacccataggcagggactggttagttttgtgtcttttctctaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATTCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCCATTGCATCCCCAAGAATCTGCAAATGAAAgtatgtctcacagccacaatgggggggacatatgaagcacacatggctgc Alignment from Spaln_nt2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG aattggaacccataggcagggactggttagttttgtgtcttttctctaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATTCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCCATTGCATCCCCAAGAATCTGCAAATGAAAgtatgtctcacagccacaatgggggggacatatgaagcacacatggctgc Alignment from Pairagon GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGC------CATCGCCTGCCTCAAGAATCTGCAGATGAAG aattggaacccataggcagggactggttagttttgtgtcttttctctaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATTCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCCATTGCAT------CCCCAAGAATCTGCAAATGAAAgtatgtctcacagccacaatgggggggacatatgaagcacacatggctgc Alignment from Exonerate_protein2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG aattggaacccataggcagggactggttagttttgtgtcttttctctaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATTCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCCATTGCATCCCCAAGAATCTGCAAATGAAAgtatgtctcacagccacaatgggggggacatatgaagcacacatggctgc Alignment from Exonerate_coding2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG aattggaacccataggcagggactggttagttttgtgtcttttctctaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATTCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCCATTGCATCCCCAAGAATCTGCAAATGAAAgtatgtctcacagccacaatgggggggacatatgaagcacacatggctgc Alignment from GeneWise GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG aattggaacccataggcagggactggttagttttgtgtcttttctctaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATTCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCCATTGCATCCCCAAGAATCTGCAAATGAAAgtatgtctcacagccacaatgggggggacatatgaagcacacatggctgc #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTG-CTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacaggaAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACAGAA---ATGCCAGGCAG-GCTACTG---CAGCATCTGGATCAGgtataaactgtgtgtgctgcgttctgcagAGCTGTTTTGCTGTGATGCTG Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacaggaAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACAGAA---ATGCCAGGCAGGCTACTG---CAGCATCTGGATCAGgtatgcagtatcctttctttcatgtttagAGCTGTTTTGCTGTGATGCTG Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGAC-----------------------------CAGAGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacagGAAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACAGAA------ATGCCAGGCAGGCTACTGCAGCATCTGGATCAGGTATAAACTGTGTGTGCTGCGTTCtgCAGAGCTGTTTTGCTGTGATGCTG Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-------------------------------AGCTGCTTTGCTGTGATGT ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacagGAAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACAGAAATG--CCAGGCAG-GCTACTG---CAGCATCTGGATCAGGTATAAACTGTGTGTGCTGCGTTCTGCAGAG--CTGTTTTGCTGTGATGC Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCC------------CCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacagGAAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACAGAAA------------------TGCCAGGCAGGCTACTGCAGCATCTGGATCAGGTATAAACTGTGTGTGCTGCGTTCTGCAGAGCTGTTTTGCTGTGATGCTG Alignment from Exonerate_protein2genome CAGAGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacaggaaactgtgtggtattgaggccatctgaaatcagtaagaacacagaaatgccaggcaggctactgcagcatctggatcaggtataaactgtgtgtgctgcgttctgCAGAGCTGTTTTGCTGTGATGCTG Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacagGAAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACAGAA------ATGCCAGGCAGGCTACTGCAGCATCTGGATCAGgtataaactgtgtgtgctgcgttctgcagAGCTGTTTTGCTGTGATGCTG #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTG-GAACACAAATTTGACTATATCTTCTTCACAg CTG---CAGCATCTGGATCAGgtaatcagtatcctttctttcatgtttagAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGCGAACACA-GTTTGACTATATCTTCTTTATAggtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from CESAR CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg CTG---CAGCATCTGGATCAGgtatgcagtatcctttctttcatgtttagAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGCGAACACAGTTTGACTATATCTTCTTTATAggtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Spaln_aa2Genome CTGCTGCC CCAGTATCTGGACCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTACTGCAgcatctggatcaggtaatcagtatcctttctttcatgtttagagC------------------TGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGCGAACACAGTTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Spaln_nt2Genome CTGCCCCAGTATCTGGACCAG-------------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTG---CAGCATCTGGATCAGGTAATCAGTATCCTTTCTTTCATGTTTAGAG--CTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGCGAACACAGTTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Pairagon CTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTG-GAACACAAATTTGACTATATCTTCTTCACAG CTG---CAGCATCTGGATCAGGTAATCAGTATCCTTTCTTTCATGTTTAGAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGCGAACAC-AGTTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Exonerate_protein2genome CACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG----AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTACTGCAGCATCTGGATCAGGTAATCAGTATCCTTTCTTTCATGTTTAGAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGCGAACACAGTTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Exonerate_coding2genome GCCCCAGTATCTGGACCAGAG CTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGA-ACACAAATTTGACTATATCTTCTTCACAG G---CAGCATCTGGATCAG--gtaatcagtatcctttctttcatgtttagagCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGCGAACACAG-TTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from GeneWise CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG CTG---CAGCATCTGGATCAGgtaatcagtatcctttctttcatgtttagAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGCGAACACAGTTTGACTATATCTTCTTTATAGGTGCgtcctatggatttggaacctgcggtagagcagggcagcacacaagt #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCC-CCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCCAGAAT-CATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTggtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCCAGAATCATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTggtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTATGAT---GATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCCAGAATCATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCCAGAATCATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCCAGAATCATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCCAGAATCATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCCAGAATCATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCCAGAATCATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct #### Aldh3b2_ID243_9 --> 0 - 1 Original Alignment GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACC-CTACCAGCTCTGCCTTTGGGGGGAGTTg atgctgcagcaaactaacagaactcaccccacttttttcttcaaactcagGTGGTGAATCAGATGCTGGAACGCACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACCCCTGCCAG-TTTGCCTTTGGGTGGGGTTggtgagttcttgccccctgttgccattgtagaaagttctgtgccactccac Alignment from CESAR GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg atgctgcagcaaactaacagaactcaccccacttttttcttcaaactcagGTGGTGAATCAGATGCTGGAACGCACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACCCCTGCCAGTTTGCCTTTGGGTGGGGTTggtgagttcttgccccctgttgccattgtagaaagttctgtgccactccac Alignment from Spaln_aa2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccccacttttttcttcaaactcagGTGGTGAATCAGATGCTGGAACGCACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACCCCTGCCAGTTTGCCTTTGGGTGGGGTTGgtgagttcttgccccctgttgccattgtagaaagttctgtgccactccac Alignment from Spaln_nt2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCC-TACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccccacttttttcttcaaactcagGTGGTGAATCAGATGCTGGAACGCACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACCCCTGCCAG-TTTGCCTTTGGGTGGGGTTGgtgagttcttgccccctgttgccattgtagaaagttctgtgccactccac Alignment from Pairagon GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccccacttttttcttcaaactcagGTGGTGAATCAGATGCTGGAACGCACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACCCCTGCCAGTTTGCCTTTGGGTGGGGTTGgtgagttcttgccccctgttgccattgtagaaagttctgtgccactccac Alignment from Exonerate_protein2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccccacttttttcttcaaactcagGTGGTGAATCAGATGCTGGAACGCACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACCCCTGCCAGTTTGCCTTTGGGTGGGGTTGgtgagttcttgccccctgttgccattgtagaaagttctgtgccactccac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccccacttttttcttcaaactcagGTGGTGAATCAGATGCTGGAACGCACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACCCCTGCCAGTTTGCCTTTGGGTGGGGTTGgtgagttcttgccccctgttgccattgtagaaagttctgtgccactccac #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccaggaGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCACGGCA-ACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccaggaGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCACGGCAACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCACGGCAACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCACGGCAACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCACGGCAACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Exonerate_protein2genome cccatctgactttctgataagcctttgtcgggctttcccctgcttcccaggaggcctttatccatgtgaggtagactccactgtgtttgaggcatctgagggatacagtgtcttgggtgctgagcgcagtgagcccctccaggatgaagatgatgagcttctgcagtttgctatccagcaaagcctgcttgaggcacggcaacaggcagagcaggtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCACGGCAACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCT-GTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTCGTGAGCT-AGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTCGTGAGCTAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTCGTGAGCTAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTCGTGAGCTAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCT-GTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTCGTGAGCT-AGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Exonerate_protein2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTCGTGAGCTAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTCGTGAGCTAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTCGTGAGCTAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGA-ACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGCACCCCAT-GGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGCACCCCATGGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGCACCCCATGGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGCACCCCATGGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGCACCCCATGGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGCACCCCATGGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Exonerate_coding2genome AAGCACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttcCAGCATGACATTGAGCAGGAGGACCCCCAAGGGCAGCACCCCATGGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGCACCCCATGGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCC-TGCGAGGCTGATCTCAATGCCAAGGACAGA gtatgcactatgattggtctccacctgtacaataacttcttttctctcagCTCCTCAGCACAGCATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTCAGCAAAA-TGATCTCAATGCCAGGGACAGAgtaagtaccaatgtcacctgccttggaggaagcacccagactctgacaag Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA gtatgcactatgattggtctccacctgtacaataacttcttttctctcagCTCCTCAGCACAGCATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTCAGCAAAATGATCTCAATGCCAGGGACAGAgtaagtaccaatgtcacctgccttggaggaagcacccagactctgacaag Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA gtatgcactatgattggtctccacctgtacaataacttcttttctctcagCTCCTCAGCACAGCATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTCAGCAAAATGATCTCAATGCCAGGGACAGAgtaagtaccaatgtcacctgccttggaggaagcacccagactctgacaag Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA gtatgcactatgattggtctccacctgtacaataacttcttttctctcagCTCCTCAGCACAGCATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTCAGCAAAATGATCTCAATGCCAGGGACAGAgtaagtaccaatgtcacctgccttggaggaagcacccagactctgacaag Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTC-------------ATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA gtatgcactatgattggtctccacctgtacaataacttcttttctctcagCTCCTCAGCACAGCATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTCAGCAAAA-------------TGATCTCAATGCCAGGGACAGAgtaagtaccaatgtcacctgccttggaggaagcacccagactctgacaag Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA gtatgcactatgattggtctccacctgtacaataacttcttttctctcagCTCCTCAGCACAGCATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTCAGCAAAATGATCTCAATGCCAGGGACAGAgtaagtaccaatgtcacctgccttggaggaagcacccagactctgacaag Alignment from Exonerate_coding2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA gtatgcactatgattggtctccacctgtacaataacttcttttctctcagCTCCTCAGCACAGCATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTCAGCAAAATGATCTCAATGCCAGGGACAGAgtaagtaccaatgtcacctgccttggaggaagcacccagactctgacaag Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA gtatgcactatgattggtctccacctgtacaataacttcttttctctcagCTCCTCAGCACAGCATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTCAGCAAAATGATCTCAATGCCAGGGACAGAgtaagtaccaatgtcacctgccttggaggaagcacccagactctgacaag #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAA-GTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAACGTATTGAGAA-AGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAACGTATTGAGAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAACGTATTGAGAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Spaln_nt2Genome CCCTTGGATGAA-GTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAACGTATTGAG-AAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTTG---CAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Pairagon CCCTTGGATGAA-GTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAACGTATTGAG-AAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATT---TGCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAACGTATTGAGAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAACGTATTGAGAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAACGTATTGAGAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTACCAGGACTCAGT-TACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttgtagctttaggggtggcctttcttggatggccctacagGTTCCCTTGCTGGTACCAGGACTCAGTCTATCCAC-GGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagtggctacctcaagggtacatggaactgagtggaagcagttggcta Alignment from CESAR GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttgtagctttaggggtggcctttcttggatggccctacagGTTCCCTTGCTGGTACCAGGACTCAGTCTATCCACGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagtggctacctcaagggtacatggaactgagtggaagcagttggcta Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttgtagctttaggggtggcctttcttggatggccctacagGTTCCCTTGCTGGTACCAGGACTCAGTCTATCCACGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagtggctacctcaagggtacatggaactgagtggaagcagttggcta Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttgtagctttaggggtggcctttcttggatggccctacagGTTCCCTTGCTGGTACCAGGACTCAGTCTATCCACGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagtggctacctcaagggtacatggaactgagtggaagcagttggcta Alignment from Pairagon GTTCCCTTGCTGGTACCAGGACTCAGT-TACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttgtagctttaggggtggcctttcttggatggccctacagGTTCCCTTGCTGGTACCAGGACTCAGTCTATCCAC-GGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagtggctacctcaagggtacatggaactgagtggaagcagttggcta Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttgtagctttaggggtggcctttcttggatggccctacagGTTCCCTTGCTGGTACCAGGACTCAGTCTATCCACGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagtggctacctcaagggtacatggaactgagtggaagcagttggcta Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttgtagctttaggggtggcctttcttggatggccctacagGTTCCCTTGCTGGTACCAGGACTCAGTCTATCCACGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagtggctacctcaagggtacatggaactgagtggaagcagttggcta Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttgtagctttaggggtggcctttcttggatggccctacagGTTCCCTTGCTGGTACCAGGACTCAGTCTATCCACGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagtggctacctcaagggtacatggaactgagtggaagcagttggcta #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGACGTGCCT-TTGTCTGTGCAGTCACTCag cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttaggGAAAAGGCAGATTTACCTCTTGT-TGTGCAGTCACTTaggtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from CESAR gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttaggGAAAAGGCAGATTTACCTCTTGTTGTGCAGTCACTTaggtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Spaln_aa2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagGGAAAAGGCAGATTTACCTCTTGTTGTGCAGTCACTTAGgtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Spaln_nt2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagGGAAAAGGCAGATTTACCTCTTGTTGTGCAGTCACTTAGgtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Pairagon GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagGGAAAAGGCAGATTTACCTCTTGTTGTGCAGTCACTTAGgtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Exonerate_protein2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagGGAAAAGGCAGATTTACCTCTTGTTGTGCAGTCACTTAGgtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Exonerate_coding2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagGGAAAAGGCAGATTTACCTCTTGTTGTGCAGTCACTTAGgtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from GeneWise AAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagggaaaaggcagatttacctcttgttgtgcagtcacttaggtgagtgtttattgtagagaggatgggggggatacccgtagagctagCTA #### Bbs1_ID729_5 --> 0 - 2 Original Alignment GACCAGATTGACCCCTTAACC-CTGAAGGAGATGCTGGAGGACATCag atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATCAT---GACCCCTTGACCCTTGA-AGATATGCTGGAACATATCaggtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from CESAR GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCag atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATCAT---GACCCCTTGACCCTTGAAGATATGCTGGAACATATCaggtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Spaln_aa2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATCAT---GACCCCTTGACCCTTGAAGATATGCTGGAACATATCAGgtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Spaln_nt2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATCA---TGACCCCTTGACCCTTGAAGATATGCTGGAACATATCAGgtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Pairagon GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATCA---TGACCCCTTGACCCTTGAAGATATGCTGGAACATATCAGgtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Exonerate_protein2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG atgactgccaccagtgctcccaaacacacttgactggctcatttctgAAGGATCATGACCCCTTGACCCTTGAAGATATGCTGGAACATATCAGgtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Exonerate_coding2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG atgactgccaccagtgctcccaaacacacttgactggctcatttctgAAGGATCATGACCCCTTGACCCTTGAAGATATGCTGGAACATATCAGgtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from GeneWise atgactgccaccagtgctcccaaacacacttgactggctcatttctgaaggatcatgaccccttgacccttgaagatatgctggaacatatcaggtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCAC-CAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCCAGAACCTGC-GCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCaggtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCCAGAACCTGCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCaggtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCCAGAACCTGCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACC-AGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCCAGAACCTG-CGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCC------CACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCA-CCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCCAGAACCTGCG-CCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCC------CACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCCAGAACCTGCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCCAGAACCTGCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCCAGAACCTGCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTG-TTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGCTTTGGCT-TGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGCTTTGGCTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGCTTTGGCTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGCTTTGGCTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGCTTTGGCTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGCTTTGGCTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGCTTTGGCTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGCTTTGGCTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAACTCACACCAC-GGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCAAAGGGATAACTCACACCATCGGA------G-CCGCATTTCACACCACCAGCCAggtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCAAAGGGATAACTCACACCATCGGAGC------CGCATTTCACACCACCAGCCAggtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCAAAGGGATAACTCACACCATCGGAGC------CGCATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCAAAGGGATAACTCACACCA------TCGGAGCCGCATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Pairagon GTTAATATCCGACAAAGGGATAACTCACACCA-CGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCAAAGGGATAACTCACACCATCGGAGCCGC-------ATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Exonerate_protein2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCAAAGGGATAACTCACACCATCGGAGC------CGCATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Exonerate_coding2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCAAAGGGATAACTCACACCATCGGAGC------CGCATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from GeneWise GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCAAAGGGATAACTCACACCATCGGAGC------CGCATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAG-GAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGCGAGCGAGAGC-AGACGCTGGTGATggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGCGAGCGAGAGCAGACGCTGGTGATggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGCGAGCGAGAGCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAG-GAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGCGAGCGAGAG-CAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAG-GAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGCGAGCGAGAG-CAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGCGAGCGAGAGCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGCGAGCGAGAGCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGCGAGCGAGAGCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga #### Btaf1_ID7227_10 --> 0 - 0 Original Alignment ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGA-TTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgtatcatctcttcattcttccccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGACTTTGGAG-CTTTGTTTCTGATGAAgtgggcccagggtaaaactttgttttgattgggggttcaaaatagctacc Alignment from CESAR ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgtatcatctcttcattcttccccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGACTTTGGAGCTTTGTTTCTGATGAAgtgggcccagggtaaaactttgttttgattgggggttcaaaatagctacc Alignment from Spaln_aa2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgtatcatctcttcattcttccccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGACTTTGGAGCTTTGTTTCTGATGAAgtgggcccagggtaaaactttgttttgattgggggttcaaaatagctacc Alignment from Spaln_nt2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgtatcatctcttcattcttccccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGACTTTGGAGCTTTGTTTCTGATGAAgtgggcccagggtaaaactttgttttgattgggggttcaaaatagctacc Alignment from Pairagon ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgtatcatctcttcattcttccccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGACTTTGGAGCTTTGTTTCTGATGAAgtgggcccagggtaaaactttgttttgattgggggttcaaaatagctacc Alignment from Exonerate_protein2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgtatcatctcttcattcttccccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGACTTTGGAGCTTTGTTTCTGATGAAgtgggcccagggtaaaactttgttttgattgggggttcaaaatagctacc Alignment from Exonerate_coding2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgtatcatctcttcattcttccccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGACTTTGGAGCTTTGTTTCTGATGAAgtgggcccagggtaaaactttgttttgattgggggttcaaaatagctacc Alignment from GeneWise ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgtatcatctcttcattcttccccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGACTTTGGAGCTTTGTTTCTGATGAAgtgggcccagggtaaaactttgttttgattgggggttcaaaatagctacc #### C030046E11Rik_ID6307_21 --> 0 - 2 Original Alignment GAGCCCAGTTCAAGTGGTGGGTTTGAG-TTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag tctctgaagagcatctttgattagaattttccttctcatcttctttcaagGAGCCAAGCTCAAGTGGTGGGTTTGAGCTTCTTCA-GAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCCGGCAAATTTGGATTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAcggtacctgaagggacggaggttatggctccagatctttcctgcacgcctca Alignment from CESAR GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag tctctgaagagcatctttgattagaattttccttctcatcttctttcaagGAGCCAAGCTCAAGTGGTGGGTTTGAGCTTCTTCAGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCCGGCAAATTTGGATTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAcggtacctgaagggacggaggttatggctccagatctttcctgcacgcctca Alignment from Spaln_aa2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG tctctgaagagcatctttgattagaattttccttctcatcttctttcaagGAGCCAAGCTCAAGTGGTGGGTTTGAGCTTCTTCAGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCCGGCAAATTTGGATTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAACGgtacctgaagggacggaggttatggctccagatctttcctgcacgcctca Alignment from Spaln_nt2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG tctctgaagagcatctttgattagaattttccttctcatcttctttcaagGAGCCAAGCTCAAGTGGTGGGTTTGAGCTTCTTCAGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCCGGCAAATTTGGATTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAACGgtacctgaagggacggaggttatggctccagatctttcctgcacgcctca Alignment from Pairagon GAGCCCAGTTCAAGTGGTGGGTTTGAG-TTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG tctctgaagagcatctttgattagaattttccttctcatcttctttcaagGAGCCAAGCTCAAGTGGTGGGTTTGAGCTTCTTCA-GAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCCGGCAAATTTGGATTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAACGgtacctgaagggacggaggttatggctccagatctttcctgcacgcctca Alignment from Exonerate_protein2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG tctctgaagagcatctttgattagaattttccttctcatcttctttcaagGAGCCAAGCTCAAGTGGTGGGTTTGAGCTTCTTCAGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCCGGCAAATTTGGATTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAACGgtacctgaagggacggaggttatggctccagatctttcctgcacgcctca Alignment from Exonerate_coding2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG tctctgaagagcatctttgattagaattttccttctcatcttctttcaagGAGCCAAGCTCAAGTGGTGGGTTTGAGCTTCTTCAGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCCGGCAAATTTGGATTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAACGgtacctgaagggacggaggttatggctccagatctttcctgcacgcctca Alignment from GeneWise GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG tctctgaagagcatctttgattagaattttccttctcatcttctttcaagGAGCCAAGCTCAAGTGGTGGGTTTGAGCTTCTTCAGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCCGGCAAATTTGGATTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAACGgtacctgaagggacggaggttatggctccagatctttcctgcacgcctca #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGT-GTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagcTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTCGTTGTCATTG-CTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACtggtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagcTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTCGTTGTCATTGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACtggtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTCGTTGTCATTGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACAT---GGCTGGATGTCTGGACTGGTGTCGTTGTCATTGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGT-GTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACAT---GGCTGGATGTCTGGACTGGTGTCGTTGTCATT-GCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTCGTTGTCATTGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTCGTTGTCATTGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTCGTTGTCATTGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact #### Cabp2_ID288_3 --> 0 - 1 Original Alignment GATCGAGAGCTG-AGACCAGAAGAGATCGAAg ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGAG---CAGAC-AGAAAAAATTGAAggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from CESAR GATCGAGAGCTGAGACCAGAAGAGATCGAAg ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGAG---CAGACAGAAAAAATTGAAggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Spaln_aa2Genome GATCGAGAGCTGAGACCAGAAGAGATCGAAG ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGAG---CAGACAGAAAAAATTGAAGgtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Spaln_nt2Genome GATCGAGAGCTGAGACCAGAAGAGATCGAAG ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGAGCAGA---CAGAAAAAATTGAAGgtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Pairagon GATCGAGAGCTGAGACCAGAAGAGATCGAAG ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGAGCAGA---CAGAAAAAATTGAAGgtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Exonerate_protein2genome ttgttatactaaagattggagtggctccacccttgctctgatcttcccaggaccgggagcagacagaaaaaattgaaggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Exonerate_coding2genome ttgttatactaaagattggagtggctccacccttgctctgatcttcccaggaccgggagcagacagaaaaaattgaaggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from GeneWise ttgttatactaaagattggagtggctccacccttgctctgatcttcccaggaccgggagcagacagaaaaaattgaaggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa #### Cabp2_ID289_4 --> 2 - 1 Original Alignment agCTGCAGATCGCCTTCCAGGAGTTTGACCGA-GACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagagCTGCAGATAGGCTTCCAGGAGTTTGACCGACGACAGGGATG-CTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCAGACACTGGGCTACATGCCCACAGAGATGGAGCTCATTGAGATATCACAACAGGTTagtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from CESAR agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagagCTGCAGATAGGCTTCCAGGAGTTTGACCGACGACAGGGATGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCAGACACTGGGCTACATGCCCACAGAGATGGAGCTCATTGAGATATCACAACAGGTTagtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Spaln_aa2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGACGACAGGGATGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCAGACACTGGGCTACATGCCCACAGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Spaln_nt2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGACGACAGGGATGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCAGACACTGGGCTACATGCCCACAGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Pairagon AGCTGCAGATCGCCTTCCAGGAGTTTGACCGA-GACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGACGACAGGGAT-GCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCAGACACTGGGCTACATGCCCACAGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Exonerate_protein2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGACGACAGGGATGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCAGACACTGGGCTACATGCCCACAGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Exonerate_coding2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGACGACAGGGATGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCAGACACTGGGCTACATGCCCACAGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from GeneWise AGACCAGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagagGCTGGGCCGTCCTCTGCAGAGCTGCAGATAGGCTTCCAGGAGTTTGACCGACGACAGGGATGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCAGACACTGGGCTACATGCCCACAGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt #### Cabp4_ID342_2 --> 0 - 1 Original Alignment GATCGTGAACTG-GGCCCTGAGGAGTTGGAGg gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGAC-TGAGGAGTTGGAGggtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from CESAR GATCGTGAACTGGGCCCTGAGGAGTTGGAGg gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACTGAGGAGTTGGAGggtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Spaln_aa2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACTGAGGAGTTGGAGGgtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Spaln_nt2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACTGAGGAGTTGGAGGgtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Pairagon GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACTGAGGAGTTGGAGGgtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Exonerate_protein2genome gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacaggaccgtgagctgcggactgaggagttggagggtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Exonerate_coding2genome gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacaggaccgtgagctgcggactgaggagttggagggtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from GeneWise GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACTGAGGAGTTGGAGGgtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat #### Carns1_ID386_6 --> 2 - 0 Original Alignment CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGG-ATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtatgatgtactttgttctgtttgtctctgtcaggaGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCAGG-TGACAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from CESAR CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtaaggtgtactttgttctgtttgtctctgtcaggaGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCAGGTGACAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Spaln_aa2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtatgatgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCAGGTGACAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Spaln_nt2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtatgatgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCAGGTGACAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Pairagon CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtatgatgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCAGGTGACAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Exonerate_protein2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtatgatgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCAGGTGACAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Exonerate_coding2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtatgatgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCAGGTGACAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from GeneWise CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtatgatgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCAGGTGACAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGC-TGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACCTGGCATG-TCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAggtaaggtgtactacgcttcctcctctatccacaggaGGTCCTCCACCTGG Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACCTGGCATGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAggtaaggtgtactttgttctgtttgtctctgtcaggaGGTCCTCCACCTGG Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACCTGGCATGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactacgcttcctcctctatccacagGAGGTCCTCCACCTGG Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACCTGGCATGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactacgcttcctcctctatccacagGAGGTCCTCCACCTGG Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCG-CTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACCTGGCAT-GTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactacgcttcctcctctatccacagGAGGTCCTCCACCTGG Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACCTGGCATGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactacgcttcctcctctatccacagGAGGTCCTCCACCTGG Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACCTGGCATGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactacgcttcctcctctatccacagGAGGTCCTCCACCTGG Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACCTGGCATGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactacgcttcctcctctatccacagGAGGTCCTCCACCTGG #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCT-GGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgttggttggcttcgttggttggcctgaattctttgctccttcttcccaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCACGGACTCCGGC-GGTGGAACTTAGTGGGAAGGAGGGCCAGGAAACACTTGTCAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaaccttgggtacccatgagaaagtatgcctgactgtctatac Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgttggttggcttcgttggttggcctgaattctttgctccttcttcccaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCACGGACTCCGGCGGTGGAACTTAGTGGGAAGGAGGGCCAGGAAACACTTGTCAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaaccttgggtacccatgagaaagtatgcctgactgtctatac Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgttggttggcttcgttggttggcctgaattctttgctccttcttcccagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCACGGACTCCGGCGGTGGAACTTAGTGGGAAGGAGGGCCAGGAAACACTTGTCAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaaccttgggtacccatgagaaagtatgcctgactgtctatac Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgttggttggcttcgttggttggcctgaattctttgctccttcttcccagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCACGGACTCCGGCGGTGGAACTTAGTGGGAAGGAGGGCCAGGAAACACTTGTCAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaaccttgggtacccatgagaaagtatgcctgactgtctatac Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCC-TGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgttggttggcttcgttggttggcctgaattctttgctccttcttcccagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCACGGACTCCGGC-GGTGGAACTTAGTGGGAAGGAGGGCCAGGAAACACTTGTCAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaaccttgggtacccatgagaaagtatgcctgactgtctatac Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgttggttggcttcgttggttggcctgaattctttgctccttcttcccagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCACGGACTCCGGCGGTGGAACTTAGTGGGAAGGAGGGCCAGGAAACACTTGTCAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaaccttgggtacccatgagaaagtatgcctgactgtctatac Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgttggttggcttcgttggttggcctgaattctttgctccttcttcccagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCACGGACTCCGGCGGTGGAACTTAGTGGGAAGGAGGGCCAGGAAACACTTGTCAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaaccttgggtacccatgagaaagtatgcctgactgtctatac Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgttggttggcttcgttggttggcctgaattctttgctccttcttcccagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCACGGACTCCGGCGGTGGAACTTAGTGGGAAGGAGGGCCAGGAAACACTTGTCAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaaccttgggtacccatgagaaagtatgcctgactgtctatac #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTA-GAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagaaTGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTACGAAG-AGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGggtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from CESAR aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagaaTGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTACGAAGAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGggtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Spaln_aa2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTACGAAGAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTACGAAGAG---TCAAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Pairagon AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTACGAAGAG---TCAAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTACGAAGAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTACGAAGAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTACGAAGAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTC-AAAGGCCTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagcCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCCAAAGGCC-GGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagcCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc #### Catsper1_ID932_9 --> 0 - 1 Original Alignment CAAGCTGCCCGGGTCCAT-GAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACCGAAAAGTTGT-GGGTGACTCTCTGACAGAACTCAATAAGGCGggtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from CESAR CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACCGAAAAGTTGTGGGTGACTCTCTGACAGAACTCAATAAGGCGggtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Spaln_aa2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACCGAAAAGTTGTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Spaln_nt2Genome CAAGCTGCCCGGGTCCAT-GAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACCGAAAAGTTG-TGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Pairagon CAAGCTGCCCGGGTCCA-TGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACCGAAAAGTTG-TGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Exonerate_protein2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACCGAAAAGTTGTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Exonerate_coding2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACCGAAAAGTTGTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from GeneWise CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACCGAAAAGTTGTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg #### Cbwd1_ID5354_13 --> 0 - 0 Original Alignment AATCTCCTGTGG-GAAAAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGCGAAAAGA-TGTAAAAAACAAGGATGGTCGCTGCATGGAGGTAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from CESAR AATCTCCTGTGGGAAAAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGCGAAAAGATGTAAAAAACAAGGATGGTCGCTGCATGGAGGTAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Spaln_aa2Genome AATCTCCTGTGGGAAAAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGCGAAAAGATGTAAAAAACAAGGATGGTCGCTGCATGGAGGTAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Spaln_nt2Genome AATCTCCTGTGGGAAAAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGCGAAAAGATGTAAAAAACAAGGATGGTCGCTGCATGGAGGTAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Pairagon AATCTCCTGTGGGAAAAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGCGAAAAGATGTAAAAAACAAGGATGGTCGCTGCATGGAGGTAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Exonerate_protein2genome AATCTCCTGTGGGAAAAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGCGAAAAGATGTAAAAAACAAGGATGGTCGCTGCATGGAGGTAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Exonerate_coding2genome AATCTCCTGTGGGAAAAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGCGAAAAGATGTAAAAAACAAGGATGGTCGCTGCATGGAGGTAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from GeneWise AATCTCCTGTGGGAAAAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGCGAAAAGATGTAAAAAACAAGGATGGTCGCTGCATGGAGGTAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTG-CTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtaagtacacttagggtcagactgacactattctataactaggGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAG---ATCATGGACCAGTACCGTGTACCTAGAGCCTG-GCCCCTACCCCATACTaagtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from CESAR GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtgagtacacttagggtcagactgacactattctataactaggGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAG---ATCATGGACCAGTACCGTGTACCTAGAGCCTGGCCCCTACCCCATACTaagtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Spaln_aa2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAG---ATCATGGACCAGTACCGTGTACCTAGAGCCTGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Spaln_nt2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAGA---TCATGGACCAGTACCGTGTACCTAGAGCCTGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Pairagon GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTG-CTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAG---ATCATGGACCAGTACCGTGTACCTAGAGCCT-GGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Exonerate_protein2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAG---ATCATGGACCAGTACCGTGTACCTAGAGCCTGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Exonerate_coding2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAG---ATCATGGACCAGTACCGTGTACCTAGAGCCTGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from GeneWise GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAG---ATCATGGACCAGTACCGTGTACCTAGAGCCTGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc #### Ccdc88b_ID1829_20 --> 1 - 2 Original Alignment gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGC-GGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTCGGTCTGG-TGAGGAGCTGCGCAGACTCCATAACGAGCATCAGaggtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from CESAR gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTCGGTCTGGTGAGGAGCTGCGCAGACTCCATAACGAGCATCAGaggtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Spaln_aa2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTCGGTCTGGTGAGGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Spaln_nt2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCG-CGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTCGGTCTGG-TGAGGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Pairagon GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCG-CGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTCGGTCTGG-TGAGGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Exonerate_protein2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTCGGTCTGGTGAGGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Exonerate_coding2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTCGGTCTGGTGAGGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from GeneWise GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTCGGTCTGGTGAGGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAG-CTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTTGCAGC-TCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTTGCAGCTCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTTGCAGCTCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTTGCAGCTCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGC-TGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTTGCAGC-TCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTTGCAGCTCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTTGCAGCTCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from GeneWise AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTTGCAGCTCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACT-GTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTT---GCTGGGGCACGGCGGGATGGCCCTTGGGCCCGTGGAGA-ACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGATGGCCCTTGGGCCCGTGGAGAACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGATGGCCCTTGGGCCCGTGGAGAACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGC---GCGAGCTGGGCCTCGGACT-GTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTG---CTGGGGCACGGCGGGATGGCCCTTGGGCCCGTGGAGA-ACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGG----------------CCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGT------------------GCTTGCTGGGGCACGGCGGGATGGCCCTTGGGCCCGTGGAGA-ACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGATGGCCCTTGGGCCCGTGGAGAACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGATGGCCCTTGGGCCCGTGGAGAACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGATGGCCCTTGGGCCCGTGGAGAACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCT-ACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgttaagtcctaaatgaactctcctgtgtttaggTACCAGCATCTGGAGCAACGTCTAGAAGCTGAGTTGCAAGCAACATCTCGCCA-TAAGGAGGAGGCGCTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAAGAGCTCATTGAGgtaggcctgcccaacacaagagactactgccctatgcattggtagttcat Alignment from CESAR gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgttaagtcctaaatgaactctcctgtgtttaggTACCAGCATCTGGAGCAACGTCTAGAAGCTGAGTTGCAAGCAACATCTCGCCATAAGGAGGAGGCGCTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAAGAGCTCATTGAGgtaggcctgcccaacacaagagactactgccctatgcattggtagttcat Alignment from Spaln_aa2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgttaagtcctaaatgaactctcctgtgtttagGTACCAGCATCTGGAGCAACGTCTAGAAGCTGAGTTGCAAGCAACATCTCGCCATAAGGAGGAGGCGCTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAAGAGCTCATTGAGgtaggcctgcccaacacaagagactactgccctatgcattggtagttcat Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgttaagtcctaaatgaactctcctgtgtttagGTACCAGCATCTGGAGCAACGTCTAGAAGCTGAGTTGCAAGCAACATCTCGCCATAAGGAGGAGGCGCTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAAGAGCTCATTGAGgtaggcctgcccaacacaagagactactgccctatgcattggtagttcat Alignment from Pairagon GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgttaagtcctaaatgaactctcctgtgtttagGTACCAGCATCTGGAGCAACGTCTAGAAGCTGAGTTGCAAGCAACATCTCGCCATAAGGAGGAGGCGCTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAAGAGCTCATTGAGgtaggcctgcccaacacaagagactactgccctatgcattggtagttcat Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgttaagtcctaaatgaactctcctgtgtttagGTACCAGCATCTGGAGCAACGTCTAGAAGCTGAGTTGCAAGCAACATCTCGCCATAAGGAGGAGGCGCTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAAGAGCTCATTGAGgtaggcctgcccaacacaagagactactgccctatgcattggtagttcat Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgttaagtcctaaatgaactctcctgtgtttagGTACCAGCATCTGGAGCAACGTCTAGAAGCTGAGTTGCAAGCAACATCTCGCCATAAGGAGGAGGCGCTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAAGAGCTCATTGAGgtaggcctgcccaacacaagagactactgccctatgcattggtagttcat Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgttaagtcctaaatgaactctcctgtgtttagGTACCAGCATCTGGAGCAACGTCTAGAAGCTGAGTTGCAAGCAACATCTCGCCATAAGGAGGAGGCGCTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAAGAGCTCATTGAGgtaggcctgcccaacacaagagactactgccctatgcattggtagttcat #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCT-GAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagaGAAGAGAAGGCTCGAGCAGC-ACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagaGAAGAGAAGGCTCGAGCAGCACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTCGAGCAGCACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Spaln_nt2Genome GGAGGAGAAGGCT-GAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTCGAGCAGC-ACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Pairagon GGAGGAGAAGGCT-GAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTCGAGCAGC-ACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTCGAGCAGCACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Exonerate_coding2genome ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagagaagagaaggctcgagcagcactagactcccatgcagaggtccagttggatgctgaaattcgtagacttcgccaggaggtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTCGAGCAGCACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTC-TCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCAATGCG------GAGGGTGTCCTCCCACCATT-AGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGgtgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCAAT------GCGGAGGGTGTCCTCCCACCATTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGgtgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCAAT------GCGGAGGGTGTCCTCCCACCATTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTC-TCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCAA------TGCGGAGGGTGTCCTCCCACCAT-TAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGT-CTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCAA------TGCGGAGGGTGTCCTCCCACCAT-TAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCAAT------GCGGAGGGTGTCCTCCCACCATTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCAAT------GCGGAGGGTGTCCTCCCACCATTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCAATGCG------GAGGGTGTCCTCCCACCATTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCA-CCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTTTAATCCTGTCAGCACCCTCCAGACC-CCAGCCTACAGGGTGTGAACCCTTCTCAggtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTTTAATCCTGTCAGCACCCTCCAGACCCCAGCCTACAGGGTGTGAACCCTTCTCAggtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTTTAATCCTGTCAGCACCCTCCAGACCCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTTTAATCCTGTCAGCACCCTCCAGACCCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCA-CCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTTTAATCCTGTCAGCACCCTCCAGACC-CCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTTTAATCCTGTCAGCACCCTCCAGACCCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Exonerate_coding2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTTTAATCCTGTCAGCACCCTCCAGACCCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTTTAATCCTGTCAGCACCCTCCAGACCCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGT-CATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagcGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCCATCTAT-GGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagcGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCCATCTATGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCCATCTATGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTC-ATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCCATCTAT-GGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGT-CATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCCATCTAT-GGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCCATCTATGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCCATCTATGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCCATCTATGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGAC-TTCTTGGTGCAGTGTATCGAACGGCTGTTGct catggctaattaagtgttccattgtagatctccccctgtaatccacacagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCTGTCTCCAACATGGCCGACAAGACTACACTGTTTCACTGCCTATTCTTGGGCCCTTCTTGGTGC-GTGTATGGAACGGTTATTGctgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct catggctaattaagtgttccattgtagatctccccctgtaatccacacagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCTGTCTCCAACATGGCCGACAAGACTACACTGTTTCACTGCCTATTCTTGGGCCCTTCTTGGTGCGTGTATGGAACGGTTATTGctgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCTGTCTCCAACATGGCCGACAAGACTACACTGTTTCACTGCCTATTCTTGGGCCCTTCTTGGTGCGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGAC-TTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCTGTCTCCAACATGGCCGACAAGACTACACTGTTTCACTGCCTATTCTTGGGCCCTTCTTGGTGC-GTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGG-ACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCTGTCTCCAACATGGCCGACAAGACTACACTGTTTCACTGCCTATTCTTGGGCCCTTCTTGGTGC-GTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCTGTCTCCAACATGGCCGACAAGACTACACTGTTTCACTGCCTATTCTTGGGCCCTTCTTGGTGCGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCTGTCTCCAACATGGCCGACAAGACTACACTGTTTCACTGCCTATTCTTGGGCCCTTCTTGGTGCGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from GeneWise ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCTGTCTCCAACATGGCCGACAAGACTACACTGTTTCACTGCCTATTCTTGGGCCCTTCTTGGTGCGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac #### Cd5_ID2994_4 --> 2 - 1 Original Alignment GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACC-ACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtaagggacagattttcttacttttgccccaagaaCCCCAGAGAACAGCTCCTCCACCCACAACCCACCCCAC-CACCACTGTACCTGAGCCCACAggtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from CESAR GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtgagggacagattttcttacttttgccccaagaaCCCCAGAGAACAGCTCCTCCACCCACAACCCACCCCACCACCACTGTACCTGAGCCCACAggtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Spaln_aa2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagggacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCCACCCCACCACCACTGTACCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Spaln_nt2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagggacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCCACCCCACCACCACTGTACCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Pairagon GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagggacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCCACCCCACCACCACTGTACCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Exonerate_protein2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagggacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCCACCCCACCACCACTGTACCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Exonerate_coding2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagggacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCCACCCCACCACCACTGTACCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from GeneWise GAGCCTGATCTGCCTA---------------------------------GAGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGGTAAGGGACAGATTTTCTTACTTTTGCCCCAAGAACCCCAGAGAACAGCTCCTCCACCCACAACCCACCCCACCACCACTGTACCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTG-AGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGCAGGCAGAGGG-AAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcctttccccttctcttttc Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGCAGGCAGAGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcttataattccatcttttt Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGCAGGCAGAGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcctttccccttctcttttc Alignment from Spaln_nt2Genome GTTGCCGTGGTG-AGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGCAGGCAGA-GGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcctttccccttctcttttc Alignment from Pairagon GTTGCCGTGGTG-AGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGCAGGCAGAGGGA-AGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcctttccccttctcttttc Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGCAGGCAGAGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcctttccccttctcttttc Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGCAGGCAGAGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcctttccccttctcttttc Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGCAGGCAGAGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcctttccccttctcttttc #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAG-CGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agatggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTT-AGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agttggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agatggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGC-GAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agatggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCCGAGATGTT-TAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAG-CGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agatggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCCGAGATGTT-TAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agatggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agatggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agatggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAA-TTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAACGTCTTGC-GAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAACGTCTTGCGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAACGTCTTGCGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAACGTCTTGCGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAACGTCTTGCGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAACGTCTTGCGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAACGTCTTGCGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAACGTCTTGCGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca #### Cdc42bpg_ID1584_14 --> 0 - 0 Original Alignment CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAA-GAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAACGAAT-TTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from CESAR CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAACGAATTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Spaln_aa2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAACGAATTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Spaln_nt2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAACGAATTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Pairagon CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAACGAATTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Exonerate_protein2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAACGAATTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Exonerate_coding2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAACGAATTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from GeneWise CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAACGAATTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGT-TTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCG-ACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGT-TTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCG-ACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac #### Cdc42bpg_ID1590_20 --> 1 - 1 Original Alignment cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAG---CAGGAGGTGGCTGAG-CTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagcCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCCTAA-GGAAGAGCTGCAAGCTCGAGGACCAGGGggtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from CESAR cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAG---CAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagcCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCCTAAGGAAGAGCTGCAAGCTCGAGGACCAGGGggtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Spaln_aa2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCCTAAGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Spaln_nt2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCT---GCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCCTAAGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Pairagon CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGC---CCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCCTAAGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Exonerate_protein2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCCTAAGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Exonerate_coding2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCCTAAGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from GeneWise CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAG---GAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCCTAAGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGC-AATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCCAATTCAG-TGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCCAATTCAGTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCCAATTCAGTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCCAATTCAGTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCCAATTCAGTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCCAATTCAGTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCCAATTCAGTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCCAATTCAGTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCCACCCCT-GTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttaggGACCCCCAGTTTTCAGCCACTCCTCGTCTTGG-CCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttaggGACCCCCAGTTTTCAGCCACTCCTCGTCTTGGCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTCGTCTTGGCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTCGTCTTGGCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Pairagon GGACCCCCAGTTCTCAGCCACCCCT-GTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTCGTCTTGG-CCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTCGTCTTGGCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTCGTCTTGGCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTCGTCTTGGCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta #### Cdc42bpg_ID1602_32 --> 0 - 1 Original Alignment GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTC-CTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg aggttgtcaagttggtccattgagtgggttttttttttttttgtgaacagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCCTTTATG-CACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAggtatctgtacacaaccccagtctgtccatgatcacctgtgtatagctgtg Alignment from CESAR GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg aggttgtcaagttggtccattgagtgggttttttttttttttgtgaacagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCCTTTATGCACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAggtatctgtacacaaccccagtctgtccatgatcacctgtgtatagctgtg Alignment from Spaln_aa2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtcaagttggtccattgagtgggttttttttttttttgtgaacagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCCTTTATGCACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtatctgtacacaaccccagtctgtccatgatcacctgtgtatagctgtg Alignment from Spaln_nt2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtcaagttggtccattgagtgggttttttttttttttgtgaacagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCCTTTATGCACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtatctgtacacaaccccagtctgtccatgatcacctgtgtatagctgtg Alignment from Pairagon GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtcaagttggtccattgagtgggttttttttttttttgtgaacagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCCTTTATGCACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtatctgtacacaaccccagtctgtccatgatcacctgtgtatagctgtg Alignment from Exonerate_protein2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtcaagttggtccattgagtgggttttttttttttttgtgaacagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCCTTTATGCACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtatctgtacacaaccccagtctgtccatgatcacctgtgtatagctgtg Alignment from Exonerate_coding2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtcaagttggtccattgagtgggttttttttttttttgtgaacagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCCTTTATGCACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtatctgtacacaaccccagtctgtccatgatcacctgtgtatagctgtg Alignment from GeneWise GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtcaagttggtccattgagtgggttttttttttttttgtgaacagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCCTTTATGCACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtatctgtacacaaccccagtctgtccatgatcacctgtgtatagctgtg #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCC-CACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCCACA-CTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCCACACTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCCACACTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCCACACTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCCACACTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCCACACTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCCACACTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCCACACTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt #### Cdca5_ID1428_2 --> 2 - 0 Original Alignment ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGC-TCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccttttgtttgtaacctgtcttcctgtttccatattcagggCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAGTCAGGTCTCAGACC-CACAAATTCATTCTCTGAAACCTGGCAAAGGgtaataacttggtcccccaggtcctaaagtgggcacacaaaccatagatt Alignment from CESAR ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccttttgtttgtaacctgtcttcctgtttccatattcagggCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAGTCAGGTCTCAGACCCACAAATTCATTCTCTGAAACCTGGCAAAGGgtaataacttggtcccccaggtcctaaagtgggcacacaaaccatagatt Alignment from Spaln_aa2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccttttgtttgtaacctgtcttcctgtttccatattcagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAGTCAGGTCTCAGACCCACAAATTCATTCTCTGAAACCTGGCAAAGGgtaataacttggtcccccaggtcctaaagtgggcacacaaaccatagatt Alignment from Spaln_nt2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGG-CTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccttttgtttgtaacctgtcttcctgtttccatattcagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAGTCAGGTCTCAGA-CCCACAAATTCATTCTCTGAAACCTGGCAAAGGgtaataacttggtcccccaggtcctaaagtgggcacacaaaccatagatt Alignment from Pairagon GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGG-CTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccttttgtttgtaacctgtcttcctgtttccatattcagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAGTCAGGTCTCAGA-CCCACAAATTCATTCTCTGAAACCTGGCAAAGGgtaataacttggtcccccaggtcctaaagtgggcacacaaaccatagatt Alignment from Exonerate_protein2genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccttttgtttgtaacctgtcttcctgtttccatattcagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAGTCAGGTCTCAGACCCACAAATTCATTCTCTGAAACCTGGCAAAGGgtaataacttggtcccccaggtcctaaagtgggcacacaaaccatagatt Alignment from Exonerate_coding2genome agcatcttgtgccttttgtttgtaacctgtcttcctgtttccatattcagggccaaggactttgctaactaagccttcagagtcatcaaagcgtaagtcaggtctcagacccacaaattcattctctgaaacctggcaaagggtaataacttggtcccccaggtcctaaagtgggcacacaaaccatagatt Alignment from GeneWise GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccttttgtttgtaacctgtcttcctgtttccatattcagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAGTCAGGTCTCAGACCCACAAATTCATTCTCTGAAACCTGGCAAAGGgtaataacttggtcccccaggtcctaaagtgggcacacaaaccatagatt #### Cdca5_ID1429_3 --> 0 - 0 Original Alignment ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATC-GTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCAGTTAGAAAAGCCATTCATCT-GAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from CESAR ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCAGTTAGAAAAGCCATTCATCTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Spaln_aa2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCAGTTAGAAAAGCCATTCATCTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Spaln_nt2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCAGTTAGAAAAGCCATTCATCTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Pairagon ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCAGTTAGAAAAGCCATTCATCTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Exonerate_protein2genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCAGTTAGAAAAGCCATTCATCTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Exonerate_coding2genome AGGACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAGGTCCCAGATGTCCACACGGTTCGAAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttCAGATGACTCCCACCGTCCCAGTTAGAAAAGCCATTCATCTGAAAAAGATAGTCGCCCATGCAGTTGAGGTAAGTGGCTGAGAGATAACTTGCAAgtgagatgtccgaaaaggccttag Alignment from GeneWise ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCAGTTAGAAAAGCCATTCATCTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGT-CCAATTGGAGATGGAGGTTTAGAAa aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCCAATTGGAG-TGGAGGTTTAGAAagtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCCAATTGGAGTGGAGGTTTAGAAagtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCCAATTGGAGTGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCC-AATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCCAATTGGAG-TGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Pairagon GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTG-TCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCCAATTGGAG-TGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCCAATTGGAGTGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCCAATTGGAGTGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCCAATTGGAGTGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg #### Chuk_ID8920_8 --> 1 - 2 Original Alignment gCATGAGAAGATTAAGAAG-AAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacaggCATGAGAAGATTAAGAAGCAAAGATCCAA-GTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from CESAR gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacaggCATGAGAAGATTAAGAAGCAAAGATCCAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Spaln_aa2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGCAAAGATCCAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Spaln_nt2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGCAAAGATCCAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Pairagon GCATGAGAAGATTAAGAAG-AAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGCAAAGATCC-AAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Exonerate_protein2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGCAAAGATCCAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Exonerate_coding2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGCAAAGATCCAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from GeneWise GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGCAAAGATCCAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAA-GGAGAGAAAGGAGACAAAg ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcaggtGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAACGGAG-AAAAGGGGATAAAggtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from CESAR gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcaggtGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAACGGAGAAAAGGGGATAAAggtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAACGGAGAAAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAA-GGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAACGGAGA-AAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAACGGAGAAAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAACGGAGAAAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAACGGAGAAAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAACGGAGAAAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGACCACCT-GGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg agctaatgatactatatgagccttgaagcatcttttttcctttcttccagccTATGGTACTATTCCAGGTCCACCTCGGCCAGAAAG-AGACGTAGGGACCCCAGGCCCCAAAggtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from CESAR ccTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg agctaatgatactatatgagccttgaagcatcttttttcctttcttccagccTATGGTACTATTCCAGGTCCACCTCGGCCAGAAAGAGACGTAGGGACCCCAGGCCCCAAAggtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTCGGCCAGAAAGAGACGTAGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTCGGCCAGAAAGAGACGTAGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Pairagon CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTCGGCCAGAAAGAGACGTAGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTCGGCCAGAAAGAGACGTAGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Exonerate_coding2genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTCGGCCAGAAAGAGACGTAGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from GeneWise CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTCGGCCAGAAAGAGACGTAGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCT-CCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagccGCGAGTTTGTCGTCCACCCCAGGCCCACGCAGGTC-ATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAagtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagccGCGAGTTTGTCGTCCACCCCAGGCCCACGCAGGTCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAagtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCACGCAGGTCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCACGCAGGTCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCACGCAGGTCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCACGCAGGTCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCACGCAGGTCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCACGCAGGTCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAAT-CTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acacacacattgggctcattgactctaatttttttttttttttttcccaggaAACGATGTGTGGCAATACTTGCGTCAAAATCCTGG-GGGTCCTCCAAGTCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acacacacattgggctcattgactctaatttttttttttttttttcccaggaAACGATGTGTGGCAATACTTGCGTCAAAATCCTGGGGGTCCTCCAAGTCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCCTGGGGGTCCTCCAAGTCCCTCAGGGCCATTAGGC---------GTCAGTGGAGAAGGGTCACTACTGTCTGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCCTGGGGGTCCTCCAAGTCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCCTGGGGGTCCTCCAAGTCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCCTGGGGGTCCTCCAAGTCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCCTGGGGGTCCTCCAAGTCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCCTGGGGGTCCTCCAAGTCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCT-GGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagctTCAGGATATAGTGCTCGGCT-GTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTGCGAcgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagctTCAGGATATAGTGCTCGGCTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTGCGAcgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTCGGCTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTCGGCTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTCGGCTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTCGGCTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTCGGCTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTCGGCTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCA-CCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcaggtGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCCAGGACCCC-TGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGAtgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcaggtGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCCAGGACCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGAtgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCCAGGACCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCCAGGACCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCCAGGACCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCCAGGACCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCCAGGACCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCCAGGACCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat #### Col17a1_ID10281_41 --> 2 - 1 Original Alignment gtGATCCTGGTGTCCCAGGTACT-CCTGGCATCTCTGGTGGTCTTTCTCATg aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttaggtGATCCTGGTGTTCCAGGTACCCCCTGGTA-TTCTGGTGGTCTTTCTCATggtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from CESAR gtGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATg aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttaggtGATCCTGGTGTTCCAGGTACCCCCTGGTATTCTGGTGGTCTTTCTCATggtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Spaln_aa2Genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTATTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Spaln_nt2Genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTATTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Pairagon GTGATCCTGGTGTCCCAGGTA-CTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTAT-TCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Exonerate_protein2genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTATTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Exonerate_coding2genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTATTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from GeneWise GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTATTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc #### Col17a1_ID10282_40 --> 2 - 1 Original Alignment aaACCTTCTTCACTGGCCCTCCAGGTCCACCCGGC-CCCCCAGGTCCCAAGGGAGACCAAg gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagtaACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCCAGGTC-AAAGGGGGACCAAggtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from CESAR aaACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagtaACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCCAGGTCAAAGGGGGACCAAggtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Spaln_aa2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCCAGGTCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Spaln_nt2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCCAGGTCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Pairagon AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCCAGGTCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Exonerate_protein2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCCAGGTCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Exonerate_coding2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCCAGGTCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from GeneWise AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCCAGGTCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGAC-GTGGGACTTCCTGGTGTCAAAg tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacaggtGCTGTGGGGACCCAGGGACTTCGGGGTGATCGTGG-ACTGCCTGGTGTGAAAggtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacaggtGCTGTGGGGACCCAGGGACTTCGGGGTGATCGTGGACTGCCTGGTGTGAAAggtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATCGTGGACTGCCTGGTGTGAAAGgtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATCGTGGACTGCCTGGTGTGAAAGgtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATCGTGGACTGCCTGGTGTGAAAGgtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATCGTGGACTGCCTGGTGTGAAAGgtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Exonerate_coding2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCACCAGGACCCAAAGGTGACCAGGGTGAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATCGTGGACTGCCTGGTGTGAAAGGTGAATTAGGGGGGGAGGGGCAATTAAATGTTGTGGGGACCCTCATTCAA Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCACCAGGACCCAAAGGT tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATCGTGGACTGCCTGGTGTGAAAGGTGAA---------TTAGGGGGGGAGGGGCAATTAAATgttgtggggacc #### Col17a1_ID10301_21 --> 2 - 1 Original Alignment gtATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcaggtATCCCTGGGCCATTGGGCCACCCCTGGCC-AGAAGGGCCAAAGGGACAGAAAGGCAGCATTggtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from CESAR gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcaggtATCCCTGGGCCATTGGGCCACCCCTGGCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTggtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Spaln_aa2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCCTGGCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Spaln_nt2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCCTGGCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Pairagon GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCCTGGCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Exonerate_protein2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCCTGGCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Exonerate_coding2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCCTGGCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from GeneWise TCAAGGACCTAAAGGAGACCGA--GGCCTTCCTGGGACCCCAGGTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG catcaagAGGAAATCAGAGTGGTGACGTTATCTTTTTCCTGCA------GGTATCCCTGGGCCATTGGGCCACCCCTGGCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAA-AAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtataaaaacagtacacttaagttattttgttcttgtattttagctTCCTTCTCAGAAGAGACACTGAAACAAGG-GAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATggtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtataaaaacagtacacttaagttattttgttcttgtattttagctTCCTTCTCAGAAGAGACACTGAAACAAGGGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATggtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTG-TGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTACTGTG-GCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTACTGTGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTACTGTGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTACTGTGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTACTGTGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTACTGTGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTACTGTGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTACTGTGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttctagattgccatgttctgtccactccaccccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGC-GTGTGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttctagattgccatgttctgtccactccaccccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCGTGTGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCG-------------CTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGC-------------CTGTGCGCGTCCTGCGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAA-CACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from CESAR AGCGCAGAGCCAGGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAACACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAACACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAACACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Pairagon AGCGCAGAGCCAGGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAACACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Exonerate_protein2genome tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagagcgcagaaccacggaacacaccccggcaggtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Exonerate_coding2genome tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagagcgcagaaccacggaacacaccccggcaggtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from GeneWise tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagagcgcagaaccacggaacacaccccggcaggtcagctggctagatgtagcatatggcctggattctattatggtagtaca #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAg tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCA-CTTCGTCAATGAAggtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCACTTCGTCAATGAAggtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCACTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCA-CTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCA-CTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCACTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCACTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCACTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCA-TGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagccCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCACTGCACTGTGA-TGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCA------TGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagccCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCACTGCACTGTGATGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCA------TGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCACTGCACTGTGATGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCA-TGCACCGTGA-----CCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCACTGCACTGTGATGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCA-TGCACCGTG-----ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCACTGCACTGTGATGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCA------TGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCACTGCACTGTGATGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCA------TGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCACTGCACTGTGATGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCA------TGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCACTGCACTGTGATGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGAT-TCAGTGGAGCTGAGCCGGAATGAAAATa tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacaggaGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATCTCAGTGGAGC-GAGTCAAAATGAAAATagttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacaggaGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATCTCAGTGGAGCGAGTCAAAATGAAAATagttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATCTCAGTGGAGCGAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGAT-TCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATCTCAGTGGAGC-GAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGAT-TCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATCTCAGTGGAGC-GAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATCTCAGTGGAGCGAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATCTCAGTGGAGCGAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATAAGAT tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATCTCAGTGGAGCGAGTCAAAATGAAAATAGTTGgtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG aatcagggttaacaccactgggccaaagaaactctattgtgtttttgcagagAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATTA-TGCCTTCGGAATGCAGgtaagatggttctaacctccctgtgcctcctcaacccatcagcaatgatc Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG aatcagggttaacaccactgggccaaagaaactctattgtgtttttgcagagAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATTATGCCTTCGGAATGCAGgtaagatggttctaacctccctgtgcctcctcaacccatcagcaatgatc Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG aatcagggttaacaccactgggccaaagaaactctattgtgtttttgcagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATTATGCCTTCGGAATGCAGgtaagatggttctaacctccctgtgcctcctcaacccatcagcaatgatc Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG aatcagggttaacaccactgggccaaagaaactctattgtgtttttgcagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATT-ATGCCTTCGGAATGCAGgtaagatggttctaacctccctgtgcctcctcaacccatcagcaatgatc Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG aatcagggttaacaccactgggccaaagaaactctattgtgtttttgcagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATT-ATGCCTTCGGAATGCAGgtaagatggttctaacctccctgtgcctcctcaacccatcagcaatgatc Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG aatcagggttaacaccactgggccaaagaaactctattgtgtttttgcagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATTATGCCTTCGGAATGCAGgtaagatggttctaacctccctgtgcctcctcaacccatcagcaatgatc Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG aatcagggttaacaccactgggccaaagaaactctattgtgtttttgcagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATTATGCCTTCGGAATGCAGgtaagatggttctaacctccctgtgcctcctcaacccatcagcaatgatc Alignment from GeneWise AGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG aatcagggttaacaccactgggccaaagaaactctattgtgtttttgcagagagAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATTATGCCTTCGGAATGCAGgtaagatggttctaacctccctgtgcctcctcaacccatcagcaatgatc #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAG-GTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcaggtGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGG-ATGGATCCAG------GCCACATTGTCCAATAATGAACAGggtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcaggtGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGATGGATCCAG------GCCACATTGTCCAATAATGAACAGggtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAG-AAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGG-ATGGATCCAGG------CCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGATGGATCCAGG------CCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGG-CGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagAGAGGTTGCAACCATTTCCCTGGCCCATGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGCTGCA-AAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagAGAGGTTGCAACCATTTCCCTGGCCCATGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGCTGCAAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Spaln_aa2Genome -- -AAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG CAgtttgggcttatctaacccaaggacagtgctgtattctttgttcacagagaggttgcaaccatttccctggcccatggatcagTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGCTGCAAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Spaln_nt2Genome GGAAGCTGCA A--ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG agtttgggcttatctaacccaagGACAG-TGCTgtattctttgttcacagagaggttgcaaccatttccctggcccatggatcagTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGCTGCAAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagAGAGGTTGCAACCATTTCCCTGGCCCATGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGCTGCAAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagagaggttgcaaccatttccctggcccaTGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGCTGCAAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagagaggttgcaaccatttccctggcccaTGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGCTGCAAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from GeneWise TG CAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG CAgtttgggcttatctaacccaaggacagtgctgtattctttgttcacagagaggttgcaaccatttccctggcccatggatcagTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGCTGCAAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAG-CGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCCACAGGAAAT-TGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCCACAGGAAATTGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCCACAGGAAATTGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCCACAGGAAATTGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAG-CGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCCACAGGAAAT-TGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCCACAGGAAATTGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCCACAGGAAATTGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCCACAGGAAATTGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTC-AGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCCAGTC-GGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgtaggtgtatttgttcacttgcagGGTGTT---ACACGCAACA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCCAGTCGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgtgttcactctatgttggttgcagGGTGTT---ACACGCAACA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCCAGTCGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgtaggtgtatttgttcacttgcagGGTGTT---ACACGCAACA Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCCAGTCGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTACTTTGTAGGTGTATTTGTTCACTTGCAGGGTGTTA---CACGCAACA Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCG-------------------------------GGGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCCAGTCGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTACTTTGTAGGTGTATTTGTTCACTTGCAGGGTGTTA---CACGCAACA Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCCAGTCGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgtaggtgtatttgttcacttgcagGGTGTT---ACACGCAACA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCCAGTCGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgtaggtgtatttgttcacttgcagGGTGTT---ACACGCAACA Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCCAGTCGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgtaggtgtatttgttcacttgcagGGTGTT---ACACGCAACA #### Cyp26a1_ID7418_6 --> 0 - 0 Original Alignment GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCA-GGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCACGGAGGGT-TCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from CESAR GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCACGGAGGGTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Spaln_aa2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCACGGAGGGTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Spaln_nt2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCACGGAGGGTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Pairagon GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCACGGAGGGTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Exonerate_protein2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCACGGAGGGTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Exonerate_coding2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCACGGAGGGTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from GeneWise GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCACGGAGGGTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGC-ATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg cttttgtccctaggaggtgcgctcttcaaatgaaagactatgcttttcaggcCTTACATTCAGTAAAGGGAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCGTTGCGGAATTTAGGTCATGGGGA-GAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACCAATtgtaggcctaggtttataggtgatcttgttcttatcaaattcgactttcac Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg cttttgtccctaggaggtgcgctcttcaaatgaaagactatgcttttcaggcCTTACATTCAGTAAAGGGAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCGTTGCGGAATTTAGGTCATGGGGAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACCAATtgtaggcctaggtttataggtgatcttgttcttatcaaattcgactttcac Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG cttttgtccctaggaggtgcgctcttcaaatgaaagactatgcttttcagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCGTTGCGGAATTTAGGTCATGGGGAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACCAATTgtaggcctaggtttataggtgatcttgttcttatcaaattcgactttcac Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG cttttgtccctaggaggtgcgctcttcaaatgaaagactatgcttttcagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCGTTGCGGAATTTAGGTCATGGGGAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACCAATTgtaggcctaggtttataggtgatcttgttcttatcaaattcgactttcac Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGG-CATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG cttttgtccctaggaggtgcgctcttcaaatgaaagactatgcttttcagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCGTTGCGGAATTTAGGTCATGGG-GAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACCAATTgtaggcctaggtttataggtgatcttgttcttatcaaattcgactttcac Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG cttttgtccctaggaggtgcgctcttcaaatgaaagactatgcttttcagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCGTTGCGGAATTTAGGTCATGGGGAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACCAATTgtaggcctaggtttataggtgatcttgttcttatcaaattcgactttcac Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG cttttgtccctaggaggtgcgctcttcaaatgaaagactatgcttttcagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCGTTGCGGAATTTAGGTCATGGGGAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACCAATTgtaggcctaggtttataggtgatcttgttcttatcaaattcgactttcac Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG cttttgtccctaggaggtgcgctcttcaaatgaaagactatgcttttcagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCGTTGCGGAATTTAGGTCATGGGGAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACCAATTgtaggcctaggtttataggtgatcttgttcttatcaaattcgactttcac #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCT-GTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTCGTGTATACTC-ATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from CESAR TTATCAAAAGTTTATGGCCCT---GTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTCGTGTATACTCA---TATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTCGTGTATACTCATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCT-GTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTCGTGTATACTC-ATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Pairagon TTATCAAAAGTTTATGGCCCT-GTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTCGTGTATACTC-ATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTCGTGTATACTCATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTCGTGTATACTCATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATG--------------------------------------------------- ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTCGTGTATACTCATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGGTAAGCATAGCTGTGGAATAACAGTGAGAGAATGTGTGAGCCCATTCCAG #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGG-CGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagagaatgtgtgagcccattccagctaaatcttctgctatgttttataggaATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCCACTTCT-ACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATggtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagagaatgtgtgagcccattccagctaaatcttctgctatgttttataggaATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCCACTTCTACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATggtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCCACTTCTACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCG-CTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCCACTTCT-ACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCCACTTCTACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCCACTTCTACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCCACTTCTACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from GeneWise -------------------------------------------------GGCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG GAGAGAATGTGTGAGCCCATTCCAGCTAAATCTTCTGCTATGTTTTATAGGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCCACTTCTACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTG-GAGGAACTTAGGAAAACCAATg ctgctgttactccaaggttaattctgtaaaagtatgtctcttctgtccaggcATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACATTGCGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGCGAAG-ACTGAGAAAGACTAATggtgagtcaaaggtataaaaggaaggcgaccaactaggtcttgcaaatcct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgttactccaaggttaattctgtaaaagtatgtctcttctgtccaggcATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACATTGCGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGCGAAGACTGAGAAAGACTAATggtgagtcaaaggtataaaaggaaggcgaccaactaggtcttgcaaatcct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttactccaaggttaattctgtaaaagtatgtctcttctgtccagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACATTGCGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGCGAAGACTGAGAAAGACTAATGgtgagtcaaaggtataaaaggaaggcgaccaactaggtcttgcaaatcct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttactccaaggttaattctgtaaaagtatgtctcttctgtccagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACATTGCGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGCGAAGACTGAGAAAGACTAATGgtgagtcaaaggtataaaaggaaggcgaccaactaggtcttgcaaatcct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttactccaaggttaattctgtaaaagtatgtctcttctgtccagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACATTGCGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGCGAAGACTGAGAAAGACTAATGgtgagtcaaaggtataaaaggaaggcgaccaactaggtcttgcaaatcct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttactccaaggttaattctgtaaaagtatgtctcttctgtccagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACATTGCGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGCGAAGACTGAGAAAGACTAATGgtgagtcaaaggtataaaaggaaggcgaccaactaggtcttgcaaatcct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttactccaaggttaattctgtaaaagtatgtctcttctgtccagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACATTGCGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGCGAAGACTGAGAAAGACTAATGgtgagtcaaaggtataaaaggaaggcgaccaactaggtcttgcaaatcct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttactccaaggttaattctgtaaaagtatgtctcttctgtccagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACATTGCGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGCGAAGACTGAGAAAGACTAATGgtgagtcaaaggtataaaaggaaggcgaccaactaggtcttgcaaatcct #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCA-GTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCACGTTTTTG-TAAAGCTACTAATGGAATGggtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCACGTTTTTGTAAAGCTACTAATGGAATGggtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCACGTTTTTGTAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCACGTTTTTGTAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCACGTTTTTGTAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCACGTTTTTGTAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCACGTTTTTGTAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCACGTTTTTGTAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa #### D19Bwg1357e_ID5846_6 --> 2 - 2 Original Alignment gcGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATgg agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtaggtGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATA-TGTTAAGAAATTTATTATGTATgggtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from CESAR gcGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATgg agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtaggtGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATGTTAAGAAATTTATTATGTATgggtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Spaln_aa2Genome GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Spaln_nt2Genome GCGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATAT-GTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Pairagon GCGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATAT-GTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Exonerate_protein2genome GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Exonerate_coding2genome GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from GeneWise GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGAC-CTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCCTGACAG-TGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from CESAR GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCCTGACAGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCCTGACAGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Spaln_nt2Genome GATGCCCTGACTGACC-TGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCCTGACA-GTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Pairagon GATGCCCTGACTGA-CCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCCTGACA-GTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Exonerate_protein2genome tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtaggatgccttaactgaccctgacagtgatgctgagcaccttcccgcagaggcacacagaggtgcctggttgggccacaaagtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Exonerate_coding2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCCTGACAGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from GeneWise GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCCTGACAGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATC-CGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCCGGGGAA-TCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCCGGGGAATCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCCGGGGAATCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCCGGGGAATCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Pairagon GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCCGGGGAATCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCCGGGGAATCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Exonerate_coding2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCCGGGGAATCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from GeneWise GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCCGGGGAATCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTG-TGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgctggggtctgggaccctgccatcccacatctagCTAGACTCTCTGCTGGTCAG-AGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGGCTAGCCTCCTTCCGGTCCTTACTAAAGCTGTCAAGgtgagtcattcagttataattgagctgtacaatcaagtatccaaggcttc Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgctggggtctgggaccctgccatcccacatctagCTAGACTCTCTGCTGGTCAGAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGGCTAGCCTCCTTCCGGTCCTTACTAAAGCTGTCAAGgtgagtcattcagttataattgagctgtacaatcaagtatccaaggcttc Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgctggggtctgggaccctgccatcccacatctagCTAGACTCTCTGCTGGTCAGAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGGCTAGCCTCCTTCCGGTCCTTACTAAAGCTGTCAAGgtgagtcattcagttataattgagctgtacaatcaagtatccaaggcttc Alignment from Spaln_nt2Genome CTGGATTCTCTG-TGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgctggggtctgggaccctgccatcccacatctagCTAGACTCTCTGCTGGTCAG-AGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGGCTAGCCTCCTTCCGGTCCTTACTAAAGCTGTCAAGgtgagtcattcagttataattgagctgtacaatcaagtatccaaggcttc Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgctggggtctgggaccctgccatcccacatctagCTAGACTCTCTGCTGGTCAGAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGGCTAGCCTCCTTCCGGTCCTTACTAAAGCTGTCAAGgtgagtcattcagttataattgagctgtacaatcaagtatccaaggcttc Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgctggggtctgggaccctgccatcccacatctagCTAGACTCTCTGCTGGTCAGAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGGCTAGCCTCCTTCCGGTCCTTACTAAAGCTGTCAAGgtgagtcattcagttataattgagctgtacaatcaagtatccaaggcttc Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgctggggtctgggaccctgccatcccacatctagCTAGACTCTCTGCTGGTCAGAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGGCTAGCCTCCTTCCGGTCCTTACTAAAGCTGTCAAGgtgagtcattcagttataattgagctgtacaatcaagtatccaaggcttc Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgctggggtctgggaccctgccatcccacatctagCTAGACTCTCTGCTGGTCAGAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGGCTAGCCTCCTTCCGGTCCTTACTAAAGCTGTCAAGgtgagtcattcagttataattgagctgtacaatcaagtatccaaggcttc #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCTGCA-CCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccaggTATGGAAAGGCTGCACCCAG-AGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggatt Alignment from CESAR gTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccaggTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctgggac Alignment from Spaln_aa2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggatt Alignment from Spaln_nt2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggatt Alignment from Pairagon GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggatt Alignment from Exonerate_protein2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggatt Alignment from Exonerate_coding2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggatt Alignment from GeneWise GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggatt #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagccATCCAGGGGTGGTTGAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGA-GGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagccATCCAGGGGTGGTTGAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGAGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGAGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGC-TGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGA-GGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGA-GGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGAGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGAGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGAGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAG-TATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg tatggggttggaagccaatacccataactgttctttttcctccataccagtgCTTCACGCCCATCAGTTTCTTCAAAATGAGCTATGCCCTTA-CTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATggtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg tatggggttggaagccaatacccataactgttctttttcctccataccagtgCTTCACGCCCATCAGTTTCTTCAAAATGAGCTATGCCCTTACTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATggtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGCTATGCCCTTACTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGCTATGCCCTTACTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAG-TATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGCTATGCCCTTA-CTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGCTATGCCCTTACTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGCTATGCCCTTACTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGAT- tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGCTATGCCCTTACTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGC-TCGGTGCTCTTTGGCACAGTCAACGGCATGATAg agagcctactagggagaactgttctggagtttcttgttttcttcctgcagtGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGACTCGGTGC-TTTTGGCACAGTCAATGTCATGATAggtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg agagcctactagggagaactgttctggagtttcttgttttcttcctgcagtGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGACTCGGTGCTTTTGGCACAGTCAATGTCATGATAggtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGACTCGGTGCTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGG-CTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGACTCGGTGCT-TTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGG-CTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGACTCGGTGCT-TTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGACTCGGTGCTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGACTCGGTGCTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGACTCGGTGCTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcaggaATATGCATGCCCTCTCGAGCATA-CCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAggtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcaggaATATGCATGCCCTCTCGAGCATACCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAggtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTCGAGCATACCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTCGAGCATACCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Pairagon GAATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTCGAGCATA-CCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTCGAGCATACCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTCGAGCATACCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTCGAGCATACCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag #### Dock8_ID5395_16 --> 0 - 2 Original Alignment GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAG-GAAGTATATACAGCTATTACATACCATAATaa ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAAGG---CCCGAATTCCTGCAGCGAAG-ATATACAGCTATTACGTACCATAACaagtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from CESAR GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCA---AGGCCCGAATTCCTGCAGCGAAGATATACAGCTATTACGTACCATAACaagtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Spaln_aa2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAG---TCAAGGCCCGAATTCCTGCAGCGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Spaln_nt2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAA---GGCCCGAATTCCTGCAGCGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Pairagon GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAA---GGCCCGAATTCCTGCAGCGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Exonerate_protein2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAAGG---CCCGAATTCCTGCAGCGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Exonerate_coding2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAAGG---CCCGAATTCCTGCAGCGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from GeneWise GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAAGG---CCCGAATTCCTGCAGCGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGA-GCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGACGCCCGTG-GGAGATGATGCGCCGTCGCATTCCAggtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGACGCCCGTGGGAGATGATGCGCCGTCGCATTCCAggtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Spaln_aa2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGACGCCCGTGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGACGCCCGTGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGA-GCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGACGCCCGT-GGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGACGCCCGTGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGACGCCCGTGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGACGCCCGTGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGT-CGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG aattcggctgtgtgtgagctatacatgtcagtatatctgtcttctttcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCCGGG-AAAGGGCAAGTCCAAGgttagtgccttatctgactagttttcttgtccctagGGTAAGGGTGTTAG Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG aattcggctgtgtgtgagctatacatgtcagtatatctgtcttctttcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCCGGGAAAGGGCAAGTCCAAGgttagtgccttatcatgaagccctctgtctctgcagGGTAAGGGTGTTAG Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG aattcggctgtgtgtgagctatacatgtcagtatatctgtcttctttcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCCGGGAAAGGGCAAGTCCAAGgttagtgccttatctgactagttttcttgtccctagGGTAAGGGTGTTAG Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG aattcggctgtgtgtgagctatacatgtcagtatatctgtcttctttcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCCGGGAAAGGGCAAGTCCAAGgttagtgccttatctgactagttttcttgtccctagGGTAAGGGTGTTAG Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG aattcggctgtgtgtgagctatacatgtcagtatatctgtcttctttcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCCGGGAAAGGGCAAGTCCAAGgttagtgccttatctgactagttttcttgtccctagGGTAAGGGTGTTAG Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG aattcggctgtgtgtgagctatacatgtcagtatatctgtcttctttcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCCGGGAAAGGGCAAGTCCAAGgttagtgccttatctgactagttttcttgtccctagGGTAAGGGTGTTAG Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG aattcggctgtgtgtgagctatacatgtcagtatatctgtcttctttcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCCGGGAAAGGGCAAGTCCAAGgttagtgccttatctgactagttttcttgtccctagGGTAAGGGTGTTAG Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG aattcggctgtgtgtgagctatacatgtcagtatatctgtcttctttcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCCGGGAAAGGGCAAGTCCAAGgttagtgccttatctgactagttttcttgtccctagGGTAAGGGTGTTAG #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTG-ATCAACCCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGCATCAACCCAG-GACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGCATCAACCCAGGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGCATCAACCCAGGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTG-ATCAACCCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGCATCAACCCAG-GACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTG-ATCAACCCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGCATCAACCCAG-GACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGCATCAACCCAGGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGCATCAACCCAGGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGCATCAACCCAGGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTA-TCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagacGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTACTCGCTGG-GAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagacGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTACTCGCTGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTACTCGCTGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTACTCGCTGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTA-TCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTACTCGCT-GGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTACTCGCTGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTACTCGCTGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTACTCGCTGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGC-TTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATCTTCTGGA-CCAGGACAAAGGCCCCATTGTAAAAaggtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATCTTCTGGACCAGGACAAAGGCCCCATTGTAAAAaggtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATCTTCTGGACCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATCTTCTGGACCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCG-CTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATCTTCTGGA-CCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATCTTCTGGACCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATCTTCTGGACCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATCTTCTGGACCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGAC-TTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tccccaagtgtttgagaggcggcagaccttctgactgttttaccacccaggATGCAATGCATTGATGTTGAGCAGCAGTTTGACCTTCTTGA-AGAGCTAGTGGCATCAGTACCCGACATGCAGGGGGACAGGGAGGACAACCATGTAGATGGGGAGAAGGGACCTCGAaggtgagtagcgaggggtctgctcacccggtctttaccctccaggGGCCGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tccccaagtgtttgagaggcggcagaccttctgactgttttaccacccaggATGCAATGCATTGATGTTGAGCAGCAGTTTGACCTTCTTGAAGAGCTAGTGGCATCAGTACCCGACATGCAGGGGGACAGGGAGGACAACCATGTAGATGGGGAGAAGGGACCTCGAaggtgagtagcgaggggtctgctgtctgtcttgtcttctcacaggGGCCGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcggcagaccttctgactgttttaccacccagGATGCAATGCATTGATGTTGAGCAGCAGTTTGACCTTCTTGAAGAGCTAGTGGCATCAGTACCCGACATGCAGGGGGACAGGGAGGACAACCATGTAGATGGGGAGAAGGGACCTCGAAGgtgagtagcgaggggtctgctcacccggtctttaccctccagGGGCCGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcggcagaccttctgactgttttaccacccagGATGCAATGCATTGATGTTGAGCAGCAGTTTGACCTTCTTGAAGAGCTAGTGGCATCAGTACCCGACATGCAGGGGGACAGGGAGGACAACCATGTAGATGGGGAGAAGGGACCTCGAAGgtgagtagcgaggggtctgctcacccggtctttaccctccagGGGCCGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcggcagaccttctgactgttttaccacccagGATGCAATGCATTGATGTTGAGCAGCAGTTTGACCTTCTTGAAGAGCTAGTGGCATCAGTACCCGACATGCAGGGGGACAGGGAGGACAACCATGTAGATGGGGAGAAGGGACCTCGAAGgtgagtagcgaggggtctgctcacccggtctttaccctccagGGGCCGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcggcagaccttctgactgttttaccacccagGATGCAATGCATTGATGTTGAGCAGCAGTTTGACCTTCTTGAAGAGCTAGTGGCATCAGTACCCGACATGCAGGGGGACAGGGAGGACAACCATGTAGATGGGGAGAAGGGACCTCGAAGgtgagtagcgaggggtctgctcacccggtctttaccctccagGGGCCGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcggcagaccttctgactgttttaccacccagGATGCAATGCATTGATGTTGAGCAGCAGTTTGACCTTCTTGAAGAGCTAGTGGCATCAGTACCCGACATGCAGGGGGACAGGGAGGACAACCATGTAGATGGGGAGAAGGGACCTCGAAGgtgagtagcgaggggtctgctcacccggtctttaccctccagGGGCCGTA Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcggcagaccttctgactgttttaccacccagGATGCAATGCATTGATGTTGAGCAGCAGTTTGACCTTCTTGAAGAGCTAGTGGCATCAGTACCCGACATGCAGGGGGACAGGGAGGACAACCATGTAGATGGGGAGAAGGGACCTCGAAGgtgagtagcgaggggtctgctcacccggtctttaccctccagGGGCCGTA #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTC-TTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagccCGGGCCCTTGAGCTCCTTCTTGG-GTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACctgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagccCGGGCCCTTGAGCTCCTTCTTGGGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACctgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCCTTCTTGGGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCCTTCTTGGGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCCTTCTTGGGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCCTTCTTGGGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCCTTCTTGGGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCCTTCTTGGGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACC-TTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCCTTGGGCA-TATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCCTTGGGCATATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCCTTGGGCATATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCCTTGGGCATATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCCTTGGGCATATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCCTTGGGCATATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCCTTGGGCATATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCCTTGGGCATATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGC-CAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcaggtATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCGAGGCCCAGG-GCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcaggtATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCGAGGCCCAGGGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCGAGGCCCAGGGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCGAGGCCCAGGGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCGAGGCCCAGGGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCGAGGCCCAGGGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCGAGGCCCAGGGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCGAGGCCCAGGGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGC-TTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg tacaggtggtttggctgtcttccatttagttttgttatttttcattttagacATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTGCCAGGCTCATTCCGATGCCAGTGTGAGCCAGGCCTTCCAGT-GGGACCTAACATTCGCTCCTGTGTGggcagattggtgtgtcctgcaagtttctgaggtcctcccaggtgaaccagt Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg tacaggtggtttggctgtcttccatttagttttgttatttttcattttagacATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTGCCAGGCTCATTCCGATGCCAGTGTGAGCCAGGCCTTCCAGTGGGACCTAACATTCGCTCCTGTGTGggcagattggtgtgtcctgcaagtttctgaggtcctcccaggtgaaccagt Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG tacaggtggtttggctgtcttccatttagttttgttatttttcattttagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTGCCAGGCTCATTCCGATGCCAGTGTGAGCCAGGCCTTCCAGTGGGACCTAACATTCGCTCCTGTGTGGgcagattggtgtgtcctgcaagtttctgaggtcctcccaggtgaaccagt Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG tacaggtggtttggctgtcttccatttagttttgttatttttcattttagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTGCCAGGCTCATTCCGATGCCAGTGTGAGCCAGGCCTTCCAGTGGGACCTAACATTCGCTCCTGTGTGGgcagattggtgtgtcctgcaagtttctgaggtcctcccaggtgaaccagt Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG tacaggtggtttggctgtcttccatttagttttgttatttttcattttagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTGCCAGGCTCATTCCGATGCCAGTGTGAGCCAGGCCTTCCAGTGGGACCTAACATTCGCTCCTGTGTGGgcagattggtgtgtcctgcaagtttctgaggtcctcccaggtgaaccagt Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG tacaggtggtttggctgtcttccatttagttttgttatttttcattttagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTGCCAGGCTCATTCCGATGCCAGTGTGAGCCAGGCCTTCCAGTGGGACCTAACATTCGCTCCTGTGTGGgcagattggtgtgtcctgcaagtttctgaggtcctcccaggtgaaccagt Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG tacaggtggtttggctgtcttccatttagttttgttatttttcattttagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTGCCAGGCTCATTCCGATGCCAGTGTGAGCCAGGCCTTCCAGTGGGACCTAACATTCGCTCCTGTGTGGgcagattggtgtgtcctgcaagtttctgaggtcctcccaggtgaaccagt Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTG------------G tacaggtggtttggctgtcttccatttagttttgttatttttcattttagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTGCCAGGCTCATTCCGATGCCAGTGTGAGCCAGGCCTTCCAGTGGGACCTAACATTCGCTCCTGTGTGGGCAGATTGGTGTgtcctgcaagtttctgaggtcctcccaggtgaaccagt #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAA-ACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcagactcctctttatttgctcttccccagatTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAACACCTGTG-CAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACaagtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcagactcctctttatttgctcttccccagatTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAACACCTGTGCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACaagtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAACACCTGTGCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAACACCTGTGCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAA-ACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAACACCTGTG-CAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAACACCTGTGCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAACACCTGTGCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAACACCTGTGCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGG-GACCTGGACCAGAAGGAACGGat cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagaaTGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGCGACCTAG-TCAGAAGGAGCGGgtgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagaaTGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGCGACCTAGTCAGAAGGAGCGGgtgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGCGACCTAGTCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGG-GACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGCGACCTAG-TCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGG-GACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGCGACCTAG-TCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGCGACCTAGTCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGCGACCTAGTCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGCGACCTAGTCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc #### Ehbp1l1_ID1224_11 --> 1 - 0 Original Alignment cGATTATTTCTCCCTTGAT-CCCCTCAACATCAAACAGAACAACAAGCAG tgtcagggcaccatgaacatctgtcaaaaactaattttctctgtgtgcagcGATTATTTCTCCCTTGATCCCCCTCA-CATCAAACAGAACAACAAGCAGgtaagatgagggaaggagtggcctcttgttattctgacagataacgggtt Alignment from CESAR cGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG tgtcagggcaccatgaacatctgtcaaaaactaattttctctgtgtgcagcGATTATTTCTCCCTTGATCCCCCTCACATCAAACAGAACAACAAGCAGgtaagatgagggaaggagtggcctcttgttattctgacagataacgggtt Alignment from Spaln_aa2Genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG tgtcagggcaccatgaacatctgtcaaaaactaattttctctgtgtgcagCGATTATTTCTCCCTTGATCCCCCTCACATCAAACAGAACAACAAGCAGgtaagatgagggaaggagtggcctcttgttattctgacagataacgggtt Alignment from Spaln_nt2Genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG tgtcagggcaccatgaacatctgtcaaaaactaattttctctgtgtgcagCGATTATTTCTCCCTTGATCCCCCTCACATCAAACAGAACAACAAGCAGgtaagatgagggaaggagtggcctcttgttattctgacagataacgggtt Alignment from Pairagon CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG tgtcagggcaccatgaacatctgtcaaaaactaattttctctgtgtgcagCGATTATTTCTCCCTTGATCCCCCTCACATCAAACAGAACAACAAGCAGgtaagatgagggaaggagtggcctcttgttattctgacagataacgggtt Alignment from Exonerate_protein2genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG tgtcagggcaccatgaacatctgtcaaaaactaattttctctgtgtgcagCGATTATTTCTCCCTTGATCCCCCTCACATCAAACAGAACAACAAGCAGgtaagatgagggaaggagtggcctcttgttattctgacagataacgggtt Alignment from Exonerate_coding2genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG tgtcagggcaccatgaacatctgtcaaaaactaattttctctgtgtgcagCGATTATTTCTCCCTTGATCCCCCTCACATCAAACAGAACAACAAGCAGgtaagatgagggaaggagtggcctcttgttattctgacagataacgggtt Alignment from GeneWise CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG tgtcagggcaccatgaacatctgtcaaaaactaattttctctgtgtgcagCGATTATTTCTCCCTTGATCCCCCTCACATCAAACAGAACAACAAGCAGgtaagatgagggaaggagtggcctcttgttattctgacagataacgggtt #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACACTCCTGGCGCA-TGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGatgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACACTCCTGGCGCATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGatgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACACTCCTGGCGCATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACACTCCTGGCGCATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACACTCCTGGCGC-ATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACACTCCTGGCGCATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACACTCCTGGCGCATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACACTCCTGGCGCATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat #### Ehbp1l1_ID1228_7 --> 2 - 1 Original Alignment atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGAT-GAAGGCCACATACGGCCCCAGCAGGCAg aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagatCTGTCACGTGAGCTGAAGACACTCTGTGAGGAAGAAGATCGAAGGCCACA-ACGTCCCCAGCAGTCAggtatggctggtaatggggttgcagtctgaacctacatgacctgtcccttt Alignment from CESAR atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagatCTGTCACGTGAGCTGAAGACACTCTGTGAGGAAGAAGATCGAAGGCCACAACGTCCCCAGCAGTCAggtatggctggtaatggggttgcagtctgaacctacatgacctgtatacaa Alignment from Spaln_aa2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagATCTGTCACGTGAGCTGAAGACACTCTGTGAGGAAGAAGATCGAAGGCCACAACGTCCCCAGCAGTCAGgtatggctggtaatggggttgcagtctgaacctacatgacctgtcccttt Alignment from Spaln_nt2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGAT-GAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagATCTGTCACGTGAGCTGAAGACACTCTGTGAGGAAGAAGATCGAAGGCCACA-ACGTCCCCAGCAGTCAGgtatggctggtaatggggttgcagtctgaacctacatgacctgtcccttt Alignment from Pairagon ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGAT-GAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagATCTGTCACGTGAGCTGAAGACACTCTGTGAGGAAGAAGATCGAAGGCCACA-ACGTCCCCAGCAGTCAGgtatggctggtaatggggttgcagtctgaacctacatgacctgtcccttt Alignment from Exonerate_protein2genome aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagatctgtcacgtgagctgaagacactctgtgaggaagaagatcgaaggccacaacgtccccagcagtcaggtatggctggtaatggggttgcagtctgaacctacatgacctgtcccttt Alignment from Exonerate_coding2genome aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagatctgtcacgtgagctgaagacactctgtgaggaagaagatcgaaggccacaacgtccccagcagtcaggtatggctggtaatggggttgcagtctgaacctacatgacctgtcccttt Alignment from GeneWise ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagATCTGTCACGTGAGCTGAAGACACTCTGTGAGGAAGAAGATCGAAGGCCACAACGTCCCCAGCAGTCAGgtatggctggtaatggggttgcagtctgaacctacatgacctgtcccttt #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCC-AAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGT-TGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCAGTC---CTCCTACAAGAAGGCCGTGCCacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCA---GTCCTCCTACAAGAAGGCCGTGCCacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCA---GTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCT---TGCAGTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCT---TGCAGTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Exonerate_protein2genome attgcaactatccatcttcacacttctctattgtttccttatcttcacaggagtcaaagggacagcggaaagtactggcaacagttggtgtcaacttagaccatcacgcagggcccatacctgcccagatctcacttcaactgcggcagaagccccaagttgtgaaagttgtgcatgctgagcttagcctcacccttgcagtcctcctacaagaaggccgtgccacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Exonerate_coding2genome attgcaactatccatcttcacacttctctattgtttccttatcttcacaggagtcaaagggacagcggaaagtactggcaacagttggtgtcaacttagaccatcacgcagggcccatacctgcccagatctcacttcaactgcggcagaagccccaagttgtgaaagttgtgcatgctgagcttagcctcacccttgcagtcctcctacaagaaggccgtgccacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCA---GTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAG-AACATCTGGATCAAGAGAg caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGCAACA-CTGGATCAAGAGAggtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGCAACACTGGATCAAGAGAggtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGCAACACTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGCAACACTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGCAACACTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGCAACACTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGCAACACTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGCAACACTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGG-ACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGCACCCTGA-TTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGCACCCTGATTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGCACCCTGATTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGCACCCTGATTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGG-ACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGCACCCTGA-TTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGCACCCTGATTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGCACCCTGATTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGCACCCTGATTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGC-ACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagtAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCCACAC-AACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtgtgtctcctcacttcaccattaggCCGCGAAGAAATTCTTCCTCCTCA Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagtAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCCACACAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtatttagtgcctctcctctcccaggCCGCGAAGAAATTCTTCCTCCTCA Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCA GCGTTCTGACACGCCCCGAAGAAAT tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCCACACAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAgtgttcagacacgtgtgtctcctcacttcaccattagG------------CCGCGAAGAAAT Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACG-------------------------CCCCGAAGAAATTCTTCCTCCTCC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCCACACAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTGTGTCTCCTCACTTCACCATTAGGCCGCGAAGAAATTCTTCCTCCTCA Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC-------------------------GCCCCGAAGAAATTCTTCCTCCTCC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCCACACAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTGTGTCTCCTCACTTCACCATTAGGCCGCGAAGAAATTCTTCCTCCTCA Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCT tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCCACACAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtgtgtctcctcacttcaccattaggccgcgaagA------AATTCTTCC Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCT tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCCACACAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtgtgtctcctcacttcaccattaggccgcgaagA------AATTCTTCC Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACG---------------------------CCCCGAAGAAATTCTTCCTCCT tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCCACACAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTGTG--TCTCCTCACTTCACCATTAGGCCGCGAAGAAATTCTTCCTCCT #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCC-AGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagaaGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTCAGTGGCC-ACCACCAGAGACTCTGACCCTTGATTGGgtgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagaaGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTCAGTGGCCACCACCAGAGACTCTGACCCTTGATTGGgtgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTCAGTGGCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTCAGTGGCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCC-CAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTCAGTGG-CCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTCAGTGGCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTCAGTGGCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTCAGTGGCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGC-TCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctctaattcctttccctgaccttcttttacccttctctttcagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGG-GGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGAtggtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctctaattcctttccctgaccttcttttacccttctctttcagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGAtggtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATC-TGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCCTGGGACT-AGAAACACTCCTGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCCTGGGACTAGAAACACTCCTGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCCTGGGACTAGAAACACTCCTGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCCTGGGACTAGAAACACTCCTGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATA-TCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCCTGGGACT-AGAAACACTCCTGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCCTGGGACTAGAAACACTCCTGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCCTGGGACTAGAAACACTCCTGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCCTGGGACTAGAAACACTCCTGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCC-AAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTCAAGT-TATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAggtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTCAAGTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAggtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTCAAGTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Spaln_nt2Genome AAATACAAGAAACC-CAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTCAAGTT-ATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTCAAGTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTCAAGTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTCAAGTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTCAAGTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCA-TTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACGAAGAATGCACTTACTGA-AGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtagtgtgtttgcgttcccctgtagGGACATACTGATGAGC Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACGAAGAATGCACTTACTGAAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtattgtttcttcccactcacacagGGACATACTGATGAGC Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACGAAGAATGCACTTACTGAAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtagtgtgtttgcgttcccctgtagGGACATACTGATGAGC Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACGAAGAATGCACTTACTGAAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtagtgtgtttgcgttcccctgtagGGACATACTGATGAGC Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCA-TTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACGAAGAATGCACTTACTGA-AGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtagtgtgtttgcgttcccctgtagGGACATACTGATGAGC Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACGAAGAATGCACTTACTGAAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtagtgtgtttgcgttcccctgtagGGACATACTGATGAGC Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACGAAGAATGCACTTACTGAAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtagtgtgtttgcgttcccctgtagGGACATACTGATGAGC Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACGAAGAATGCACTTACTGAAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtagtgtgtttgcgttcccctgtagGGACATACTGATGAGC #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTC-ACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctccatgacaatctcttccttttctccagaTGGTTGGTCTTGGACACAGAGACCAGAGAAATTGTATCTGATGTCCACGG-TGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAggtaagtgtgtcttcccccggcctgggtcctgcctggttctgctttgtcac Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctccatgacaatctcttccttttctccagaTGGTTGGTCTTGGACACAGAGACCAGAGAAATTGTATCTGATGTCCACGGTGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAggtaagtgtgtcttcccccggcctgggtcctgcctggttctgctttgtcac Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctccatgacaatctcttccttttctccagATGGTTGGTCTTGGACACAGAGACCAGAGAAATTGTATCTGATGTCCACGGTGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtaagtgtgtcttcccccggcctgggtcctgcctggttctgctttgtcac Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctccatgacaatctcttccttttctccagATGGTTGGTCTTGGACACAGAGACCAGAGAAATTGTATCTGATGTCCACGGTGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtaagtgtgtcttcccccggcctgggtcctgcctggttctgctttgtcac Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctccatgacaatctcttccttttctccagATGGTTGGTCTTGGACACAGAGACCAGAGAAATTGTATCTGATGTCCACGGTGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtaagtgtgtcttcccccggcctgggtcctgcctggttctgctttgtcac Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctccatgacaatctcttccttttctccagATGGTTGGTCTTGGACACAGAGACCAGAGAAATTGTATCTGATGTCCACGGTGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtaagtgtgtcttcccccggcctgggtcctgcctggttctgctttgtcac Alignment from Exonerate_coding2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctccatgacaatctcttccttttctccagATGGTTGGTCTTGGACACAGAGACCAGAGAAATTGTATCTGATGTCCACGGTGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtaagtgtgtcttcccccggcctgggtcctgcctggttctgctttgtcac Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctccatgacaatctcttccttttctccagATGGTTGGTCTTGGACACAGAGACCAGAGAAATTGTATCTGATGTCCACGGTGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtaagtgtgtcttcccccggcctgggtcctgcctggttctgctttgtcac #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACC---TCGACATGGAATCAC-CTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCCTGCTGCACC-TTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCCTGCTGCACCTTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCCTGCTGCACCTTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACC-TGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCCTGCTGCA-CCTTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCA-----------------------TTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCT--------------------CATCAATGTGGAATTACCCTGCTGCACCTTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCCTGCTGCACCTTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCCTGCTGCACCTTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCCTGCTGCACCTTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGC-TTCCTGGGCCTTTTCTTCATTGTCag gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCCTTCCTGG-GCTTTTCTTCATTGTTaggtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCCTTCCTGGGCTTTTCTTCATTGTTaggtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCCTTCCTGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCCTTCCTGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCCTTCCTGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCCTTCCTGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCCTTCCTGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCCTTCCTGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACA-GCCTTCGCGGACATTGTTta atgcagcagtatgtaagcccctacattacctgtacttttccccactacagtGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCACGCTT-TGCAGACATTGTTtagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta atgcagcagtatgtaagcccctacattacctgtacttttccccactacagtGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCACGCTTTGCAGACATTGTTtagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCACGCTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCACGCTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCACGCTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCACGCTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCACGCTTTGCAGACATTGTTtagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from GeneWise CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCACGCTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAAT-TTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATCTTCCGTC-CTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggcacaaatct Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATCTTCCGTCCTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggtgtctctca Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATCTTCCGTCCTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggcacaaatct Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATCTTCCGTCCTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggcacaaatct Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATCTTCCGTCCTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggcacaaatct Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATCTTCCGTCCTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggcacaaatct Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATCTTCCGTCCTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggcacaaatct Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATCTTCCGTCCTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggcacaaatct #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCC-CGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTTC-GTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCaggtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTTCGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCaggtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTTCGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTTCGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTTCGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTTCGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTTCGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTTCGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATG-AACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacaggGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGCAACCACA-CCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacaggGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGCAACCACACCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGCAACCACACCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGCAACCACACCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATG-AACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGCAACCACA-CCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGCAACCACACCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGCAACCACACCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGCAACCACACCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAAT-GTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCAATCGTTG-TTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACtagtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCAATCGTTGTTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACtagtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCAATCGTTGTTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCAATCGTTGTTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCG----------CTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCAA----------TCGTTGTTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCAATCGTTGTTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCAATCGTTGTTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCAATCGTTGTTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCC-TTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcaggTTGGACTCATACAGCCACAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCCTTAATTG-GTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcaggTTGGACTCATACAGCCACAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCCTTAATTGGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCCTTAATTGGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCCTTAATTGGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCCTTAATTGGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCCTTAATTGGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCCTTAATTGGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCCTTAATTGGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCC-CAAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCC-CAAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCG-CCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCC-CAAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGGTTG-TTGACCATCCTTGTTTTGTTAATTCCACTTg cagtgatctgtccatgcttaagaaaattcatgtcttcatataacttgtaggtCCCAGAAATTGCCTATGGTTGCTTGA-CATCCTTGTTTTGTTGATTCCACTTggttagcaaaggtgttcagggtgaatattaaagtaatgttgagaagtaacc Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg cagtgatctgtccatgcttaagaaaattcatgtcttcatataacttgtaggtCCCAGAAATTGCCTATGGTTGCTTGACATCCTTGTTTTGTTGATTCCACTTggttagcaaaggtgttcagggtgaatattaaagtaatgttgagaagtaacc Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgtccatgcttaagaaaattcatgtcttcatataacttgtagGTCCCAGAAATTGCCTATGGTTGCTTGACATCCTTGTTTTGTTGATTCCACTTGgttagcaaaggtgttcagggtgaatattaaagtaatgttgagaagtaacc Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgtccatgcttaagaaaattcatgtcttcatataacttgtagGTCCCAGAAATTGCCTATGGTTGCTTGACATCCTTGTTTTGTTGATTCCACTTGgttagcaaaggtgttcagggtgaatattaaagtaatgttgagaagtaacc Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgtccatgcttaagaaaattcatgtcttcatataacttgtagGTCCCAGAAATTGCCTATGGTTGCTTGACATCCTTGTTTTGTTGATTCCACTTGgttagcaaaggtgttcagggtgaatattaaagtaatgttgagaagtaacc Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgtccatgcttaagaaaattcatgtcttcatataacttgtagGTCCCAGAAATTGCCTATGGTTGCTTGACATCCTTGTTTTGTTGATTCCACTTGgttagcaaaggtgttcagggtgaatattaaagtaatgttgagaagtaacc Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgtccatgcttaagaaaattcatgtcttcatataacttgtagGTCCCAGAAATTGCCTATGGTTGCTTGACATCCTTGTTTTGTTGATTCCACTTGgttagcaaaggtgttcagggtgaatattaaagtaatgttgagaagtaacc Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgtccatgcttaagaaaattcatgtcttcatataacttgtagGTCCCAGAAATTGCCTATGGTTGCTTGACATCCTTGTTTTGTTGATTCCACTTGgttagcaaaggtgttcagggtgaatattaaagtaatgttgagaagtaacc #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTC-CGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagaCTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTCGGGG-ACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagaCTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTCGGGGACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTCGGGGACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTCGGGGACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTCGGGGACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTCGGGGACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTCGGGGACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTCGGGGACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa #### Fgf8_ID9567_2 --> 1 - 0 Original Alignment gCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagaCTTCTGCAATTGTTGCGTTTTCT-CCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from CESAR gCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagaCTTCTGCAATTGTTGCGTTTTCTCCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Spaln_aa2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagACTTCTGCAATTGTTGCGTTTTCTCCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Spaln_nt2Genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagACTTCTGCAATTGTTGCGTTTTCT-CCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Pairagon GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagACTTCTGCAATTGTTGCGTTTTCTCCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Exonerate_protein2genome gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagacttctgcaattgttgcgttttctcctccaggcccaagtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Exonerate_coding2genome gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagacttctgcaattgttgcgttttctcctccaggcccaagtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from GeneWise gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagacttctgcaattgttgcgttttctcctccaggcccaagtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATC-TTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagtgAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCAAAGCTCCTA------CTTGTCCTTTCAGATTC-TCCTGCCCGACAGACTCTCCTCATTGAAaggtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagtgAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCAAAGCTCCTA------CTTGTCCTTTCAGATTCTCCTGCCCGACAGACTCTCCTCATTGAAaggtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCAAAGCTCCTA------CTTGTCCTTTCAGATTCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCAAAGCTCCT-----ACTTGTCCTTTCAGATT-CTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCG-------------------------------------------TCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCAAAGCTCCTACTTGTCCTTTCAGATTCTCCTGC-------------------------------------------------CCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCAAAGCTCCTA------CTTGTCCTTTCAGATTCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCAAAGCTCCTA------CTTGTCCTTTCAGATTCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCAAAGCTCCTA------CTTGTCCTTTCAGATTCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGA-AAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagcCTAGTTTGCACTGCCCTTCGTGGACAAGCTCGGTG-CTTCTCTGAGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagcCTAGTTTGCACTGCCCTTCGTGGACAAGCTCGGTGCTTCTCTGAGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTGCCCTTCGTGGACAAGCTCGGTGCTTCTCTGAGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGA-AAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTGCCCTTCGTGGACAAGCTCGGTG-CTTCTCTGAGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGA-AAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTGCCCTTCGTGGACAAGCTCGGTG-CTTCTCTGAGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTGCCCTTCGTGGACAAGCTCGGTGCTTCTCTGAGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTGCCCTTCGTGGACAAGCTCGGTGCTTCTCTGAGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTGCCCTTCGTGGACAAGCTCGGTGCTTCTCTGAGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTG-AACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGAGGTCTGGTGCAATGTGGCTG-CAAG------TGCAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGAGGTCTGGTGCAATGTGGCTGCAAG------TGCAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGAGGTCTGGTGCAATGTGGCTGCAAG------TGCAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTG-AACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGAGGTCTGGTGCAATGTGGCTG-CAAG-TG-----CAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Pairagon AATCTGTCTCGGGGGCTGGTG-AACGTGGCTGCCAAGCTGACCCA----CAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGAGGTCTGGTGCAATGTGGCTG-----------CAAGTGCAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGAGGTCTGGTGCAATGTGGCTGCAAGTGC------AATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Exonerate_coding2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGAGGTCTGGTGCAATGTGGCTGCAAGTGC------AATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGAGGTCTGGTGCAATGTGGCTGCAAGTGC------AATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGG-CTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgtttgtggtgacatttgcacttcttaatttctagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTCCGGCCTCTTTC-TAGCCAGTATTCAGTTTCAGTACATTCCCTGGATGGATTCcggtacacaggggtaaacatgtttgctagcttctttggtctagttcaaggtt Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgtttgtggtgacatttgcacttcttaatttctagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTCCGGCCTCTTTCTAGCCAGTATTCAGTTTCAGTACATTCCCTGGATGGATTCcggtacacaggggtaaacatgtttgctagcttctttggtctagttcaaggtt Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacatttgcacttcttaatttctagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTCCGGCCTCTTTCTAGCCAGTATTCAGTTTCAGTACATTCCCTGGATGGATTCCGgtacacaggggtaaacatgtttgctagcttctttggtctagttcaaggtt Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacatttgcacttcttaatttctagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTCCGGCCTCTTTCTAGCCAGTATTCAGTTTCAGTACATTCCCTGGATGGATTCCGgtacacaggggtaaacatgtttgctagcttctttggtctagttcaaggtt Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGG-CTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacatttgcacttcttaatttctagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTCCGGCCTCTTTCT-AGCCAGTATTCAGTTTCAGTACATTCCCTGGATGGATTCCGgtacacaggggtaaacatgtttgctagcttctttggtctagttcaaggtt Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacatttgcacttcttaatttctagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTCCGGCCTCTTTCTAGCCAGTATTCAGTTTCAGTACATTCCCTGGATGGATTCCGgtacacaggggtaaacatgtttgctagcttctttggtctagttcaaggtt Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacatttgcacttcttaatttctagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTCCGGCCTCTTTCTAGCCAGTATTCAGTTTCAGTACATTCCCTGGATGGATTCCGgtacacaggggtaaacatgtttgctagcttctttggtctagttcaaggtt Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacatttgcacttcttaatttctagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTCCGGCCTCTTTCTAGCCAGTATTCAGTTTCAGTACATTCCCTGGATGGATTCCGgtacacaggggtaaacatgtttgctagcttctttggtctagttcaaggtt #### Fkbp2_ID1946_3 --> 1 - 1 Original Alignment gATGTGTGAAGGGGAAAAGCGGAAGTTG-GTGATCCCATCCGAGCTGg gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacaggATGTGTGAAGGAGAAAGGCGGAAGTTGCGTCA-CCTGTCAGAGCTGggtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from CESAR gATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacaggATGTGTGAAGGAGAAAGGCGGAAGTTGCGTCACCTGTCAGAGCTGggtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Spaln_aa2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacagGATGTGTGAAGGAGAAAGGCGGAAGTTGCGTCACCTGTCAGAGCTGGgtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Spaln_nt2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacagGATGTGTGAAGGAGAAAGGCGGAAGTTGCGTCACCTGTCAGAGCTGGgtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Pairagon GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacagGATGTGTGAAGGAGAAAGGCGGAAGTTGCGTCACCTGTCAGAGCTGGgtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Exonerate_protein2genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacagGATGTGTGAAGGAGAAAGGCGGAAGTTGCGTCACCTGTCAGAGCTGGgtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Exonerate_coding2genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacagGATGTGTGAAGGAGAAAGGCGGAAGTTGCGTCACCTGTCAGAGCTGGgtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from GeneWise gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacaggatgtgtgaaggagaaaggcggaagttgcgtcacctgtcagagctgggtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc #### Fth1_ID2623_2 --> 0 - 0 Original Alignment TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGC-CGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCTGAAAAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCCGAATTT-CCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from CESAR TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCTGAAAAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCCGAATTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Spaln_aa2Genome TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCTGAAAAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCCGAATTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Spaln_nt2Genome TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCTGAAAAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCCGAATTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Pairagon TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCTGAAAAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCCGAATTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Exonerate_protein2genome TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCTGAAAAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCCGAATTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Exonerate_coding2genome TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCTGAAAAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCCGAATTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from GeneWise TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCTGAAAAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCCGAATTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg #### Gal_ID62_4 --> 2 - 1 Original Alignment gaAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATG-GAGTTTCTCAGTTTCTTGCACCTTAAAg ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagggAGTGTTGATGTGCCCCTGCCCGAAAGTATCATTGTTCGCACTATAATGCGAGTTTCTCA-TTTCTTGCACCTTAAAggtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from CESAR gaAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagggAGTGTTGATGTGCCCCTGCCCGAAAGTATCATTGTTCGCACTATAATGCGAGTTTCTCATTTCTTGCACCTTAAAggtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Spaln_aa2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCGAAAGTATCATTGTTCGCACTATAATGCGAGTTTCTCATTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Spaln_nt2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATG-GAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCGAAAGTATCATTGTTCGCACTATAATGCGAGTTTCTCA-TTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Pairagon GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATG-GAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCGAAAGTATCATTGTTCGCACTATAATGCGAGTTTCTCA-TTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Exonerate_protein2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCGAAAGTATCATTGTTCGCACTATAATGCGAGTTTCTCATTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Exonerate_coding2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCGAAAGTATCATTGTTCGCACTATAATGCGAGTTTCTCATTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from GeneWise TGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagggagTGTTGATGTGCCCCTGCCCGAAAGTATCATTGTTCGCACTATAATGCGAGTTTCTCATTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTC-AAAACACATTCTGACAGCAAGCCTTATg taccttgggagtggagggtgcaagtgggaagtgttcctctgtttgcttagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCCAAAACAC-TTCTGACAGCAAGCCTTATggtactgaattcggcaggcccgaagagtcgaagtgtaaatgtttggtttta Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg taccttgggagtggagggtgcaagtgggaagtgttcctctgtttgcttagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCCAAAACACTTCTGACAGCAAGCCTTATggtactgaattcggcaggcccgaagagtcgtctaagcttcatctcctttta Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcaagtgggaagtgttcctctgtttgcttagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCCAAAACACTTCTGACAGCAAGCCTTATGgtactgaattcggcaggcccgaagagtcgaagtgtaaatgtttggtttta Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcaagtgggaagtgttcctctgtttgcttagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCCAAAACACTTCTGACAGCAAGCCTTATGgtactgaattcggcaggcccgaagagtcgaagtgtaaatgtttggtttta Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATT-CAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcaagtgggaagtgttcctctgtttgcttagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCCAAAACAC-TTCTGACAGCAAGCCTTATGgtactgaattcggcaggcccgaagagtcgaagtgtaaatgtttggtttta Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcaagtgggaagtgttcctctgtttgcttagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCCAAAACACTTCTGACAGCAAGCCTTATGgtactgaattcggcaggcccgaagagtcgaagtgtaaatgtttggtttta Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcaagtgggaagtgttcctctgtttgcttagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCCAAAACACTTCTGACAGCAAGCCTTATGgtactgaattcggcaggcccgaagagtcgaagtgtaaatgtttggtttta Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTAT--------------------------------------------------- taccttgggagtggagggtgcaagtgggaagtgttcctctgtttgcttagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCCAAAACACTTCTGACAGCAAGCCTTATGGTACTGAATTCGGCAGGCCCGAAGAGTCGAAGTGTAAATGTTTGGTTTTA #### Ganab_ID2472_11 --> 0 - 1 Original Alignment ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATG-TCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGCTCAGAGA-TGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from CESAR ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGCTCAGAGATGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Spaln_aa2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGCTCAGAGATGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Spaln_nt2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGCTCAGAGATGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Pairagon ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATG-TCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGCTCAGAGA-TGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Exonerate_protein2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGCTCAGAGATGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Exonerate_coding2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGCTCAGAGATGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from GeneWise ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGGGACCCAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGCTCAGAGATGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGGTACGCATgtttctgtttcttacaagtaaatgctacaaagtattacactt #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGT-CCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTCTCCT-TGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTCTCCTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTCTCCTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTCTCCTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTCTCCTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTCTCCTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTCTCCTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTCTCCTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCAT-CATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCCATGGGCCCC-AACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCCATGGGCCCCAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCCATGGGCCCCAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCCATGGGCCCCAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCAT-CATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCCATGGGCCCCA-ACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCCATGGGCCCCAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCCATGGGCCCCAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCCATGGGCCCCAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATT-GTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTCGTGC-TCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTCGTGCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTCGTGCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTCGTGCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTCGTGCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTCGTGCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTCGTGCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTCGTGCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTG-GATGGCAACCCAGAAACTAACAAGt ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGCGATGGCAACC-AGACGCTAACAAGtgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGCGATGGCAACCAGACGCTAACAAGtgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGCGATGGCAACCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTG-GATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGCGATGGCAA-CCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTG-GATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGCGATGGCAA-CCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGCGATGGCAACCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGCGATGGCAACCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGCGATGGCAACCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTG-GCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagctGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGCGCCTTGG-TGCACGAGGTCTTTATTTTCCCAGTGGAGGGTGGTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagctGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGCGCCTTGGTGCACGAGGTCTTTATTTTCCCAGTGGAGGGTGGTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGCGCCTTGGTGCACGAGGTCTTTATTTTCCCAGTGGAGGGTGGTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGCGCCTTGGTGCACGAGGTCTTTATTTTCCCAGTGGAGGGTGGTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGCGCCTTGGTGCACGAGGTCTTTATTTTCCCAGTGGAGGGTGGTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGCGCCTTGGTGCACGAGGTCTTTATTTTCCCAGTGGAGGGTGGTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGCGCCTTGGTGCACGAGGTCTTTATTTTCCCAGTGGAGGGTGGTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGCGCCTTGGTGCACGAGGTCTTTATTTTCCCAGTGGAGGGTGGTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGG-GAACTAATTGAAATTAAAAACAAAAAAAAG gaatcctttatgttgagcgttgtgtattgcctgaggacccctccccacagcaGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGCGAATTAA-TGAAATTAAAAACAAAAAAAAGgtaccagtagtgaatccatatcttaactggttggtcccctctaaacttac Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatcctttatgttgagcgttgtgtattgcctgaggacccctccccacagcaGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGCGAATTAATGAAATTAAAAACAAAAAAAAGgtaccagtagtgaatccatatcttaactggttggtcccctctaaacttac Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatcctttatgttgagcgttgtgtattgcctgaggacccctccccacagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGCGAATTAATGAAATTAAAAACAAAAAAAAGgtaccagtagtgaatccatatcttaactggttggtcccctctaaacttac Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatcctttatgttgagcgttgtgtattgcctgaggacccctccccacagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGCGAATTAATGAAATTAAAAACAAAAAAAAGgtaccagtagtgaatccatatcttaactggttggtcccctctaaacttac Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatcctttatgttgagcgttgtgtattgcctgaggacccctccccacagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGCGAATTAATGAAATTAAAAACAAAAAAAAGgtaccagtagtgaatccatatcttaactggttggtcccctctaaacttac Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatcctttatgttgagcgttgtgtattgcctgaggacccctccccacagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGCGAATTAATGAAATTAAAAACAAAAAAAAGgtaccagtagtgaatccatatcttaactggttggtcccctctaaacttac Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatcctttatgttgagcgttgtgtattgcctgaggacccctccccacagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGCGAATTAATGAAATTAAAAACAAAAAAAAGgtaccagtagtgaatccatatcttaactggttggtcccctctaaacttac Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatcctttatgttgagcgttgtgtattgcctgaggacccctccccacagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGCGAATTAATGAAATTAAAAACAAAAAAAAGgtaccagtagtgaatccatatcttaactggttggtcccctctaaacttac #### Gbf1_ID9798_17 --> 0 - 2 Original Alignment CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATT-GGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGAAACCCTCGGTTAGACAAAAAGATGATTCGGAG-ATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGaggtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from CESAR CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGAAACCCTCGGTTAGACAAAAAGATGATTCGGAGATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGaggtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Spaln_aa2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGAAACCCTCGGTTAGACAAAAAGATGATTCGGAGATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Spaln_nt2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGAAACCCTCGGTTAGACAAAAAGATGATTCGGAGATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Pairagon CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGAAACCCTCGGTTAGACAAAAAGATGATTCGGAGATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Exonerate_protein2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGAAACCCTCGGTTAGACAAAAAGATGATTCGGAGATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Exonerate_coding2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGAAACCCTCGGTTAGACAAAAAGATGATTCGGAGATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from GeneWise CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGAAACCCTCGGTTAGACAAAAAGATGATTCGGAGATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATC-TCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcaggAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTCTCCCTGTGCA-ATTCACAGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcaggAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTCTCCCTGTGCAATTCACAGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTCTCCCTGTGCAATTCACAGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTCTCCCTGTGCAATTCACAGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCA-TCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTCTCCCTGTGC-AATTCACAGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTCTCCCTGTGCAATTCACAGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTCTCCCTGTGCAATTCACAGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTCTCCCTGTGCAATTCACAGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGATCCCAATGGC-AAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCAATGGCCAAGATCTCTT-ACAACATGAGGAGACACCATCAAACcggtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from CESAR GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCAATGGCCAAGATCTCTTACAACATGAGGAGACACCATCAAACcggtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCAATGGCCAAGATCTCTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCAATGGCCAAGATCTCTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Pairagon GTAGAAGATTTTGTGGATCCCAATGG-CAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCAATGGCCAAGATCTCT-TACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCAATGGCCAAGATCTCTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCAATGGCCAAGATCTCTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCAATGGCCAAGATCTCTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAA-ATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCAGAAAAGCATGATCACGG-AAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from CESAR CAATGTGACCCAGAAAAA-ATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCAGAAAAGCATGATCACGG-AAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCAGAAAAGCATGATCACGGAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCAGAAAAGCATGATCACGGAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Pairagon CAATGTGACCCAGAAAAA-ATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCAGAAAAGCATGATCAC-GGAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCAGAAAAGCATGATCACGGAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCAGAAAAGCATGATCACGGAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCAGAAAAGCATGATCACGGAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCA-GATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCACGATGTAG-TGGGATGGAAGAGACTCGGATGCGGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCACGATGTAGTGGGATGGAAGAGACTCGGATGCGGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCACGATGTAGTGGGATGGAAGAGACTCGGATGCGGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCACGATGTAGTGGGATGGAAGAGACTCGGATGCGGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCA-GATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCACGATGT-AGTGGGATGGAAGAGACTCGGATGCGGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCACGATGTAGTGGGATGGAAGAGACTCGGATGCGGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCACGATGTAGTGGGATGGAAGAGACTCGGATGCGGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCACGATGTAGTGGGATGGAAGAGACTCGGATGCGGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATC-TCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagtTATCACTCAGAAACTAATCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCCTCCCTTC-GCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagtTATCACTCAGAAACTAATCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCCTCCCTTCGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCCTCCCTTCGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCCTCCCTTCGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCCTCCCTTCGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCCTCCCTTCGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCCTCCCTTCGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCCTCCCTTCGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt #### Gpam_ID11543_6 --> 1 - 0 Original Alignment gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAG-GGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGCGGTCAATTAG-GATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from CESAR gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGCGGTCAATTAGGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Spaln_aa2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGCGGTCAATTAGGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Spaln_nt2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGCGGTCAATTAGGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Pairagon GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAG-GGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGCGGTCAATTAG-GATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Exonerate_protein2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGCGGTCAATTAGGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Exonerate_coding2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGCGGTCAATTAGGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from GeneWise GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGCGGTCAATTAGGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCC-TGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCCTGCT-TAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCCTGCTTAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCTTGCTTTATGCCAGCCGGGCCCTGCTTAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCCTGCTTAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCCTGCTTAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCTTGCTTTATGCCAGCCGGGCCCTGCTTAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCTTGCTTTATGCCAGCCGGGCCCTGCTTAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCCTGCTTAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAG-GCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGCGCCA-AGCTAGGCGTCGACCAGCAATGAGCCGAGGGctgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from CESAR GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGCGCCAAGCTAGGCGTCGACCAGCAATGAGCCGAGGGctgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGCGCCAAGCTAGGCGTCGACCAGCAATGAGCCGAGGGCTgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGCGCCAAGCTAGGCGTCGACCAGCAATGAGCCGAGGGCTgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Pairagon GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGCGCCAAGCTAGGCGTCGACCAGCAATGAGCCGAGGGCTgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Exonerate_protein2genome aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaaggtggtattcaagcgccaagctaggcgtcgaccagcaatgagccgagggctgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Exonerate_coding2genome aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaaggtggtattcaagcgccaagctaggcgtcgaccagcaatgagccgagggctgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from GeneWise GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGCGCCAAGCTAGGCGTCGACCAGCAATGAGCCGAGGGCTgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACA-GTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACACGTAGTTG-CCCTGGGGATGTACTATACATTCCCATGTATtggtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACACGTAGTTGCCCTGGGGATGTACTATACATTCCCATGTATtggtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACACGTAGTTGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACACGTAGTTGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACA-GTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACACGTAGTT-GCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACACGTAGTTGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACACGTAGTTGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACACGTAGTTGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAG-GAGGACCAGACGCTTGTGAACCTGGACACGt ggataagttctaattataacatgtttggtatcacacatttttccccccagcTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGCGAGGCCC-GTCACTTGTGAACCTGGACACAtgtaagtgagatgcatggtatggcttacctttacagatagaacattgttct Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt ggataagttctaattataacatgtttggtatcacacatttttccccccagcTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGCGAGGCCCGTCACTTGTGAACCTGGACACAtgtaagtgagatgcatggtatggcttacctttacagatagaacattgttct Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatgtttggtatcacacatttttccccccagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGCGAGGCCCGTCACTTGTGAACCTGGACACATgtaagtgagatgcatggtatggcttacctttacagatagaacattgttct Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatgtttggtatcacacatttttccccccagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGCGAGGCCCGTCACTTGTGAACCTGGACACATgtaagtgagatgcatggtatggcttacctttacagatagaacattgttct Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatgtttggtatcacacatttttccccccagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGCGAGGCCCGTCACTTGTGAACCTGGACACATgtaagtgagatgcatggtatggcttacctttacagatagaacattgttct Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatgtttggtatcacacatttttccccccagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGCGAGGCCCGTCACTTGTGAACCTGGACACATgtaagtgagatgcatggtatggcttacctttacagatagaacattgttct Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatgtttggtatcacacatttttccccccagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGCGAGGCCCGTCACTTGTGAACCTGGACACATgtaagtgagatgcatggtatggcttacctttacagatagaacattgttct Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatgtttggtatcacacatttttccccccagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGCGAGGCCCGTCACTTGTGAACCTGGACACATgtaagtgagatgcatggtatggcttacctttacagatagaacattgttct #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAG-ACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGATCGGCAAAGCACCC-GTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from CESAR GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGATCGGCAAAGCACCCGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGATCGGCAAAGCACCCGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Spaln_nt2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGATCGGCAAAGCACCCGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Pairagon GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGATCGGCAAAGCACCCGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGATCGGCAAAGCACCCGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGATCGGCAAAGCACCCGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGATCGGCAAAGCACCCGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTGGACTGGAAGGACTTC-CTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcaggGAGAGACTTTTGGACTGGAAGGACTTTCTCCC-GGTGAATAGCTGGAGAAATGTCACCATGGTAgcgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from CESAR gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcaggGAGAGACTTTTGGACTGGAAGGACTTTCTCCCGGTGAATAGCTGGAGAAATGTCACCATGGTAgcgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagGGAGAGACTTTTGGACTGGAAGGACTTTCTCCCGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Spaln_nt2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagGGAGAGACTTTTGGACTGGAAGGACTTTCTCCCGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Pairagon GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagGGAGAGACTTTTGGACTGGAAGGACTTTCTCCCGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Exonerate_protein2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagGGAGAGACTTTTGGACTGGAAGGACTTTCTCCCGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagGGAGAGACTTTTGGACTGGAAGGACTTTCTCCCGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCAC-CTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCCTGCCCC-GCATCTACAGGACCAAGCCCAAAAACTTATGaagtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCCTGCCCCGCATCTACAGGACCAAGCCCAAAAACTTATGaagtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCCTGCCCCGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCCTGCCCCGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCCTGCCCCGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCCTGCCCCGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCCTGCCCCGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg #### Hps1_ID8616_12 --> 0 - 2 Original Alignment AACACCTGGCTGGAGTTTAAGAGCAAA-GCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAACGCCTTCT-TAAAGGTGAGCCAGGTTCATCCTGGgagtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from CESAR AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAACGCCTTCTTAAAGGTGAGCCAGGTTCATCCTGGgagtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Spaln_aa2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAACGCCTTCTTAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Spaln_nt2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAACGCCTTCTTAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Pairagon AACACCTGGCTGGAGTTTAAGAGCAAA-GCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAACGCCTTCT-TAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Exonerate_protein2genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAACGCCTTCTTAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Exonerate_coding2genome tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagaatgcctggctggagtttaagagtaaacgccttcttaaaggtgagccaggttcatcctgggagtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from GeneWise AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAACGCCTTCTTAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAG-AGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCAAGGAGCCAGCAGCACCT-GGTGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from CESAR AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCAAGGAGCCAGCAGCACCTGGTGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCAAGGAGCCAGCAGCACCTGGTGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAG-AGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCAAGGAGCCAGCAGCACCT-GGTGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Pairagon AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAG-AGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCAAGGAGCCAGCAGCACCT-GGTGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCAAGGAGCCAGCAGCACCTGGTGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCAAGGAGCCAGCAGCACCTGGTGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAG-GACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagcCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATCGATCTAC-GCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagcCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATCGATCTACGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATCGATCTACGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAG-GACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCC---------TTCTCCTAGTGCATCGATCTAC-GCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCC---------------AGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCT------------------------TCTCCTAGTGCATCGATCTACGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Exonerate_protein2genome cctcccacaccattttagttgtattctcttccaccccctttttctgttagccaaggcgcaagcaccctgtgcccggcagacctccttctcctagtgcatcgatctacgccctcaccagctatgacagaggaggagggggaggaagaagatagtcacagccctcaggtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATCGATCTACGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAAC-ATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTGCTCAACCATGA-GGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTGCTCAACCATGAGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTGCTCAACCATGAGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAAC-ATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTGCTCAACCATGA-GGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAA-CATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTGCTCAACCATGAG-GTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTGCTCAACCATGAGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTGCTCAACCATGAGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTGCTCAACCATGAGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACC-CCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacatgctatctccaatgctttgcaggAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGACCTTAAGCCCTGTCAGAATAAAACACCTTTCACCAC-CTGCCCACCCAACAAGgtctgcaaccgctcatgttcgatgcccttgttttgcattctgtccaagcc Alignment from CESAR gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacatgctatctccaatgctttgcaggAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGACCTTAAGCCCTGTCAGAATAAAACACCTTTCACCACCTGCCCACCCAACAAGgtctgcaaccgctcatgttcgatgcccttgttttgcattctgtccaagcc Alignment from Spaln_aa2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacatgctatctccaatgctttgcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGACCTTAAGCCCTGTCAGAATAAAACACCTTTCACCACCTGCCCACCCAACAAGgtctgcaaccgctcatgttcgatgcccttgttttgcattctgtccaagcc Alignment from Spaln_nt2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacatgctatctccaatgctttgcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGACCTTAAGCCCTGTCAGAATAAAACACCTTTCACCACCTGCCCACCCAACAAGgtctgcaaccgctcatgttcgatgcccttgttttgcattctgtccaagcc Alignment from Pairagon GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacatgctatctccaatgctttgcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGACCTTAAGCCCTGTCAGAATAAAACACCTTTCACCACCTGCCCACCCAACAAGgtctgcaaccgctcatgttcgatgcccttgttttgcattctgtccaagcc Alignment from Exonerate_protein2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacatgctatctccaatgctttgcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGACCTTAAGCCCTGTCAGAATAAAACACCTTTCACCACCTGCCCACCCAACAAGgtctgcaaccgctcatgttcgatgcccttgttttgcattctgtccaagcc Alignment from Exonerate_coding2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacatgctatctccaatgctttgcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGACCTTAAGCCCTGTCAGAATAAAACACCTTTCACCACCTGCCCACCCAACAAGgtctgcaaccgctcatgttcgatgcccttgttttgcattctgtccaagcc Alignment from GeneWise GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacatgctatctccaatgctttgcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGACCTTAAGCCCTGTCAGAATAAAACACCTTTCACCACCTGCCCACCCAACAAGgtctgcaaccgctcatgttcgatgcccttgttttgcattctgtccaagcc #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAG-CCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagcCTTGAGCAGGAGCCCTG-CGAGGTTACTGAGCCTGAGGATGCAGAAGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagcCTTGAGCAGGAGCCCTGCGAGGTTACTGAGCCTGAGGATGCAGAAGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCCTGCGAGGTTACTGAGCCTGAGGATGCAGAAGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCCTGCGAGGTTACTGAGCCTGAGGATGCAGAAGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCCTGCGAGGTTACTGAGCCTGAGGATGCAGAAGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCCTGCGAGGTTACTGAGCCTGAGGATGCAGAAGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCCTGCGAGGTTACTGAGCCTGAGGATGCAGAAGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCCTGCGAGGTTACTGAGCCTGAGGATGCAGAAGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGAC-TATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACCTATCTCC-AAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACCTATCTCCAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACCTATCTCCAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACCTATCTCCAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGA-CTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACCTATCTCC-AAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACCTATCTCCAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACCTATCTCCAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACCTATCTCCAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTC-AACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagtGAGATCAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACACTGCAGTATCTCCAACCTCA-CAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagtGAGATCAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACACTGCAGTATCTCCAACCTCACAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACACTGCAGTATCTCCAACCTCACAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACACTGCAGTATCTCCAACCTCACAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCT-CAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACACTGCAGTATCTCCAACCTCA-CAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACACTGCAGTATCTCCAACCTCACAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACACTGCAGTATCTCCAACCTCACAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACACTGCAGTATCTCCAACCTCACAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTTTCA-CCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCCAACCAGCC-GGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCCAACCAGCCGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCCAACCAGCCGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCCAACCAGCCGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCAGCAACC--CCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACC--CAACCAGCCGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCCAACCAGCCGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCCAACCAGCCGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCCAACCAGCCGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAA-GAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAACGAGG-TCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAACGAGGTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAACGAGGTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAACGAGGTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAACGAGGTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAACGAGGTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAACGAGGTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from GeneWise GTCCATTACATTGACTTC---------------AACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagCATTCCCTCTGTCCCTTCTGTCCCACTGCAGTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAACGAGGTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment CTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCT-CTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg CCTTGCAGgtgagtgacagggttattggtctctctctctctctctttcagTTCAGAGGTGGACCACAAGAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCCTTGGCC-AGCTGAAGCCTCTGCAACCCTGACGGTACTTACACCGggtacatattagctctgggtgctaagatgaggcatgatttgggctttaaga Alignment from CESAR CTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg CCTTGCAGgtgagcgacagggttattggtctctctctctctctctttcagTTCAGAGGTGGACCACAAGAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCCTTGGCCAGCTGAAGCCTCTGCAACCCTGACGGTACTTACACCGggtacatattagctctgggtgctaagatgaggcatgatttgggctttaaga Alignment from Spaln_aa2Genome CTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG CCTTGCAGgtgagtgacagggttattggtctctctctctctctctttcagTTCAGAGGTGGACCACAAGAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCCTTGGCCAGCTGAAGCCTCTGCAACCCTGACGGTACTTACACCGGgtacatattagctctgggtgctaagatgaggcatgatttgggctttaaga Alignment from Spaln_nt2Genome CTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG CCTTGCAGgtgagtgacagggttattggtctctctctctctctctttcagTTCAGAGGTGGACCACAAGAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCCTTGGCCAGCTGAAGCCTCTGCAACCCTGACGGTACTTACACCGGgtacatattagctctgggtgctaagatgaggcatgatttgggctttaaga Alignment from Pairagon CTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG CCTTGCAGgtgagtgacagggttattggtctctctctctctctctttcagTTCAGAGGTGGACCACAAGAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCCTTGGCCAGCTGAAGCCTCTGCAACCCTGACGGTACTTACACCGGgtacatattagctctgggtgctaagatgaggcatgatttgggctttaaga Alignment from Exonerate_protein2genome CTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG CCTTGCAGgtgagtgacagggttattggtctctctctctctctctttcagTTCAGAGGTGGACCACAAGAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCCTTGGCCAGCTGAAGCCTCTGCAACCCTGACGGTACTTACACCGGgtacatattagctctgggtgctaagatgaggcatgatttgggctttaaga Alignment from Exonerate_coding2genome CTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG CCTTGCAGgtgagtgacagggttattggtctctctctctctctctttcagTTCAGAGGTGGACCACAAGAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCCTTGGCCAGCTGAAGCCTCTGCAACCCTGACGGTACTTACACCGGgtacatattagctctgggtgctaagatgaggcatgatttgggctttaaga Alignment from GeneWise CTGTGCAG------------------------------------------TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG CCTTGCAGGTGAGTGACAGGGTTATTGGTCTCTCTCTCTCTCTCTTTCAGTTCAGAGGTGGACCACAAGAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCCTTGGCCAGCTGAAGCCTCTGCAACCCTGACGGTACTTACACCGGgtacatattagctctgggtgctaagatgaggcatgatttgggctttaaga #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAA-TTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAACTTCATTG-GTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAACTTCATTGGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAACTTCATTGGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAACTTCATTGGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Pairagon AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAA-TTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAACTTCATTG-GTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAACTTCATTGGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAACTTCATTGGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAACTTCATTGGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTC-TTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagacTCCAGCAACTATGCTACTTTCCTCCTTCAATG-CTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagacTCCAGCAACTATGCTACTTTCCTCCTTCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCCTTCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCCTTCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCT-CTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCCTTCAATG-CTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCCTTCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCCTTCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from GeneWise ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCCTTCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAAT-TCTGATGGACTTGGAATAaa tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagatTTTAATGTTGAATATCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTTAAGAATCGCTG-TGGACTTGGAATCaggtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from CESAR atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagatTTTAATGTTGAATATCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTTAAGAATCGCTGTGGACTTGGAATCaggtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTTAAGAATCGCTGTGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTTAAGAATCGCTGTGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Pairagon ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTTAAGAATCGCTGTGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTTAAGAATCGCTGTGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTTAAGAATCGCTGTGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTTAAGAATCGCTGTGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACAC-ACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagcCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACCACACTGG-AGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagcCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACCACACTGGAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACCACACTGGAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACCACACTGGAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACA-CACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACCACACTGG-AGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACCACACTGGAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACCACACTGGAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat #### Klc2_ID861_5 --> 1 - 0 Original Alignment gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGAT-GCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagaGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATCGCCC-GGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from CESAR gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagaGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATCGCCCGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Spaln_aa2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATCGCCCGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Spaln_nt2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATCGCCCGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Pairagon GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATCGCCCGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Exonerate_protein2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGC cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATCGCCCGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTGTAAGgtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATCGCCCGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAg gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGCTTTCCCA-TGAAGATGAACAGAGGTCGggtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGCTTTCCCATGAAGATGAACAGAGGTCGggtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGCTTTCCCATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGCTTTCCCATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Pairagon GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGCTTTCCCATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGCTTTCCCATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGCTTTCCCATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAAC-ATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACCATTACTCGAT-TGGGTTGTCAAATACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACCATTACTCGATTGGGTTGTCAAATACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACCATTACTCGATTGGGTTGTCAAATACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAAC-ATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACCATTACTCGAT-TGGGTTGTCAAATACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAA-CATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACCATTACTCGAT-TGGGTTGTCAAATACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACCATTACTCGATTGGGTTGTCAAATACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACCATTACTCGATTGGGTTGTCAAATACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACCATTACTCGATTGGGTTGTCAAATACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGC-ATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCCATCCAGCAGC-CAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCCATCCAGCAGCCAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCCATCCAGCAGCCAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCCATCCAGCAGCCAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAG-CATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCCATCCAGCAGC-CAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCCATCCAGCAGCCAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCCATCCAGCAGCCAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCCATCCAGCAGCCAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTT-GAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctccatatgccagcacacctatttctggtgaatgttttcttccaacaggAGGCACACTCCATATGGTAATCAAACTGACTATAGGATATTTCGAGCTTA-CAAGCGGCTGCAGAATTGGACAGAAgtaaaacaggaagagaggttgagaggggagtgcctggggggcctcttatc Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctccatatgccagcacacctatttctggtgaatgttttcttccaacaggAGGCACACTCCATATGGTAATCAAACTGACTATAGGATATTTCGAGCTTACAAGCGGCTGCAGAATTGGACAGAAgtaaaacaggaagagaggttgagaggggagtgcctggggggcctcttatc Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctccatatgccagcacacctatttctggtgaatgttttcttccaacagGAGGCACACTCCATATGGTAATCAAACTGACTATAGGATATTTCGAGCTTACAAGCGGCTGCAGAATTGGACAGAAgtaaaacaggaagagaggttgagaggggagtgcctggggggcctcttatc Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctccatatgccagcacacctatttctggtgaatgttttcttccaacagGAGGCACACTCCATATGGTAATCAAACTGACTATAGGATATTTCGAGCTTACAAGCGGCTGCAGAATTGGACAGAAgtaaaacaggaagagaggttgagaggggagtgcctggggggcctcttatc Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTT-GAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctccatatgccagcacacctatttctggtgaatgttttcttccaacagGAGGCACACTCCATATGGTAATCAAACTGACTATAGGATATTTCGAGCTT-ACAAGCGGCTGCAGAATTGGACAGAAgtaaaacaggaagagaggttgagaggggagtgcctggggggcctcttatc Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctccatatgccagcacacctatttctggtgaatgttttcttccaacagGAGGCACACTCCATATGGTAATCAAACTGACTATAGGATATTTCGAGCTTACAAGCGGCTGCAGAATTGGACAGAAgtaaaacaggaagagaggttgagaggggagtgcctggggggcctcttatc Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctccatatgccagcacacctatttctggtgaatgttttcttccaacagGAGGCACACTCCATATGGTAATCAAACTGACTATAGGATATTTCGAGCTTACAAGCGGCTGCAGAATTGGACAGAAgtaaaacaggaagagaggttgagaggggagtgcctggggggcctcttatc Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctccatatgccagcacacctatttctggtgaatgttttcttccaacagGAGGCACACTCCATATGGTAATCAAACTGACTATAGGATATTTCGAGCTTACAAGCGGCTGCAGAATTGGACAGAAgtaaaacaggaagagaggttgagaggggagtgcctggggggcctcttatc #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTG-TTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaaggtTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTC-CAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaaggtTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTG-TTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTC-CAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGT-CCCTCGCGCACACAGTGCATTg gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagatATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCCTT-CCGCAAACAGTGTATAggtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagatATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCCTTCCGCAAACAGTGTATAggtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCCTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCCTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCCTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCCTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCCTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCCTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga #### Ltbp3_ID1268_20 --> 2 - 1 Original Alignment agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTC-ACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg ttgggactattataactatctctatgaacctgaccggcctatcctctcagagGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCCACTC-GCAGGAATGCTGTTGCTCCCTGGGAGCTGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtgagccaatagaccaaatcatggtcctatcaaactgttcttagaattct Alignment from CESAR agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg ttgggactattataactatctctatgaacctgaccggcctatcctctcagagGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCCACTCGCAGGAATGCTGTTGCTCCCTGGGAGCTGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtgagccaatagaccaaatcatggtcctatcaaactgttcttagaattct Alignment from Spaln_aa2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttgggactattataactatctctatgaacctgaccggcctatcctctcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCCACTCGCAGGAATGCTGTTGCTCCCTGGGAGCTGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagccaatagaccaaatcatggtcctatcaaactgttcttagaattct Alignment from Spaln_nt2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttgggactattataactatctctatgaacctgaccggcctatcctctcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCCACTCGCAGGAATGCTGTTGCTCCCTGGGAGCTGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagccaatagaccaaatcatggtcctatcaaactgttcttagaattct Alignment from Pairagon AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttgggactattataactatctctatgaacctgaccggcctatcctctcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCCACTCGCAGGAATGCTGTTGCTCCCTGGGAGCTGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagccaatagaccaaatcatggtcctatcaaactgttcttagaattct Alignment from Exonerate_protein2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttgggactattataactatctctatgaacctgaccggcctatcctctcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCCACTCGCAGGAATGCTGTTGCTCCCTGGGAGCTGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagccaatagaccaaatcatggtcctatcaaactgttcttagaattct Alignment from Exonerate_coding2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttgggactattataactatctctatgaacctgaccggcctatcctctcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCCACTCGCAGGAATGCTGTTGCTCCCTGGGAGCTGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagccaatagaccaaatcatggtcctatcaaactgttcttagaattct Alignment from GeneWise AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttgggactattataactatctctatgaacctgaccggcctatcctctcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCCACTCGCAGGAATGCTGTTGCTCCCTGGGAGCTGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagccaatagaccaaatcatggtcctatcaaactgttcttagaattct #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGAC-AACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tggagacatgggagtataagcgaacccactgccttgccttactcctgcagctGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACTCAAGACCAACA-CATTGTGAACTATGGCATTCCTACTCACCGGggtgagtaagctagtttagtttaagggttcttgatgagaatgccattttac Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tggagacatgggagtataagcgaacccactgccttgccttactcctgcagctGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACTCAAGACCAACACATTGTGAACTATGGCATTCCTACTCACCGGggtgagtaagctagtttagtttaagggttcttgatgagaatgccattttac Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tggagacatgggagtataagcgaacccactgccttgccttactcctgcagCTGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACTCAAGACCAACACATTGTGAACTATGGCATTCCTACTCACCGGGgtgagtaagctagtttagtttaagggttcttgatgagaatgccattttac Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tggagacatgggagtataagcgaacccactgccttgccttactcctgcagCTGAATTTCATAG---GTGTCCTGATGGTAAAGGCTATACTCAAGACCAACACATTGTGAACTATGGCATTCCTACTCACCGGGgtgagtaagctagtttagtttaagggttcttgatgagaatgccattttac Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tggagacatgggagtataagcgaacccactgccttgccttactcctgcagCTGAATTTCATAG---GTGTCCTGATGGTAAAGGCTATACTCAAGACCAACACATTGTGAACTATGGCATTCCTACTCACCGGGgtgagtaagctagtttagtttaagggttcttgatgagaatgccattttac Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tggagacatgggagtataagcgaacccactgccttgccttactcctgcagCTGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACTCAAGACCAACACATTGTGAACTATGGCATTCCTACTCACCGGGgtgagtaagctagtttagtttaagggttcttgatgagaatgccattttac Alignment from Exonerate_coding2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tggagacatgggagtataagcgaacccactgccttgccttactcctgcagCTGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACTCAAGACCAACACATTGTGAACTATGGCATTCCTACTCACCGGGgtgagtaagctagtttagtttaagggttcttgatgagaatgccattttac Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tggagacatgggagtataagcgaacccactgccttgccttactcctgcagCTGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACTCAAGACCAACACATTGTGAACTATGGCATTCCTACTCACCGGGgtgagtaagctagtttagtttaagggttcttgatgagaatgccattttac #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGC-CGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCC-TGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTggtatgtatttattgaaggatgatatccttgttaaattttcctagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTggtatgtatttattgaaggatgaggatttatatttcattttatagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatatccttgttaaattttcctagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCC-GCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCC-TGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatatccttgttaaattttcctagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTG-CCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCC-TGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatatccttgttaaattttcctagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatatccttgttaaattttcctagGGTCCC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatatccttgttaaattttcctagGGTCCC Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatatccttgttaaattttcctagGGTCCC #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTG-GACGCCTCCCGTGCCCGCTGCGTGg accaatgtatacaaatcctactatagatgtgttacctctgctttcttcagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGCGATGCCTCCC-TGCTCGTCGTGTAggtaatgatgacattagggggtgagggacagtgtgcactcatcacagactt Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg accaatgtatacaaatcctactatagatgtgttacctctgctttcttcagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGCGATGCCTCCCTGCTCGTCGTGTAggtaatgatgacattagggggtgagggacagtgtgcactcatcacagactt Alignment from Spaln_aa2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accaatgtatacaaatcctactatagatgtgttacctctgctttcttcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGCGATGCCTCCCTGCTCGTCGTGTAGgtaatgatgacattagggggtgagggacagtgtgcactcatcacagactt Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTG-GACGCCTCCCGTGCCCGCTGCGTGG accaatgtatacaaatcctactatagatgtgttacctctgctttcttcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGCGATGCCTCCC-TGCTCGTCGTGTAGgtaatgatgacattagggggtgagggacagtgtgcactcatcacagactt Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTG-GACGCCTCCCGTGCCCGCTGCGTGG accaatgtatacaaatcctactatagatgtgttacctctgctttcttcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGCGATGCCTCCC-TGCTCGTCGTGTAGgtaatgatgacattagggggtgagggacagtgtgcactcatcacagactt Alignment from Exonerate_protein2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accaatgtatacaaatcctactatagatgtgttacctctgctttcttcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGCGATGCCTCCCTGCTCGTCGTGTAGgtaatgatgacattagggggtgagggacagtgtgcactcatcacagactt Alignment from Exonerate_coding2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accaatgtatacaaatcctactatagatgtgttacctctgctttcttcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGCGATGCCTCCCTGCTCGTCGTGTAGgtaatgatgacattagggggtgagggacagtgtgcactcatcacagactt Alignment from GeneWise --------------TCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accaatgtatacaaatcctactatagATGTGTTACCTCTGCTTTCTTCAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGCGATGCCTCCCTGCTCGTCGTGTAGgtaatgatgacattagggggtgagggacagtgtgcactcatcacagactt #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTG-GAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagatGTCATC------GTGGGGCTCATTGCAGTGGGA------------AGTGAGGCAGCTGAATTCCACAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTACGAGCACA-ATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagatGTCATC------GTGGGGCTCATTGCAGTGGGA------------AGTGAGGCAGCTGAATTCCACAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTACGAGCACAATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagATGTCATC------GTGGGGCTCATTGCAGTGGGA------------AGTGAGGCAGCTGAATTCCACAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTACGAGCACAATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCC---TGGACCTGCTGCTG-GAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagATGTCATC------GTGGGGCTCATTGCAGTGGG------------AAGTGAGGCAGCTGAATTCCACAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTACGAGCA-CAATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCC---TGGACCTGCTGCT------------ aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagATGTCATC------GTGGGGCTCATTGCAGTGGG------------AAGTGAGGCAGCTGAATTCCACAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTACGAGCACAATTgtgtccagttgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagATGTCATC------GTGGGGCTCATTGCAGTGGGA------------AGTGAGGCAGCTGAATTCCACAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTACGAGCACAATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Exonerate_coding2genome aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagatgtcatcgtggggctcattgcagtgggaagtgaggcagctgaattccacagctgttatttgagcagtcctttggatctgctgctacgagcacaattgtgtccagttgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagATGTCATC------GTGGGGCTCATTGCAGTGGGA------------AGTGAGGCAGCTGAATTCCACAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTACGAGCACAATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGG-GAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacaggcTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCACTGCGGCGAATGGC-GGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacaggcTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCACTGCGGCGAATGGCGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCACTGCGGCGAATGGCGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGG-GAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCACTGCGGCGAATGGC-GGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGG-GAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCACTGCGGCGAATGGC-GGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCACTGCGGCGAATGGCGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Exonerate_coding2genome tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacaggctaccctaatgaggaggctgcagaggtagtgctggtttcactgcggcgaatggcggagcaacacaaggacaaggtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from GeneWise TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagGATGCCTCCGCGTACATTACAGGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCACTGCGGCGAATGGCGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCAC-CTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACCTTGCTGG-ACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGggtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTG------CGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACCTTGCTGGACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGggtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACCTTGCTGGACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACG------GCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACCTTGCTGGACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCA------GCTGCGACGGCGCGAGCACC-TGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACCTTGCTGG-ACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACCTTGCTGGACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACCTTGCTGGACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACCTTGCTGGACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCAC-CCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatccacagactgactgactctccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCCAATGTTG-GGCCTACATCAGCAGCTACCTCaggtatgtctgttcacacccccaccctcaggtgtccattgtgctactttctg Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatccacagactgactgactctccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCCAATGTTGGGCCTACATCAGCAGCTACCTCaggtatgtctgttcacacccccaccctcaggtgtccattgtgctagccaccc Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCCAATGTTGGGCCTACATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctactttctg Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCCAATGTTGGGCCTACATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctactttctg Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCA-CCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCCAATGTTG-GGCCTACATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctactttctg Alignment from Exonerate_protein2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCCAATGTTGGGCCTACATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctactttctg Alignment from Exonerate_coding2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCCAATGTTGGGCCTACATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctactttctg Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCCAATGTTGGGCCTACATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctactttctg #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTGTGGATCTGTATG-GAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcaggAATGACCGATTGTGGATCTGTATGCGAGT-CTGTGGGGGAGCGTCACTACAGGAAGTTTACCATggtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from CESAR gAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcaggAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATggtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Spaln_aa2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Spaln_nt2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Pairagon GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Exonerate_protein2genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Exonerate_coding2genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from GeneWise GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg #### Map4k2_ID1625_5 --> 2 - 0 Original Alignment ccACTGGGCCCCTGGAAGAA-CGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatatcaagtccttccattcagtactctctcccccacttctcagccACTGGACCCCTTGAAGAACCGGC-GATTGCCTATGTTTGTCGGGCAGCACTTAGGgtaggtgatttgccaacagtaccaatttggggactcaaattgcttgtgag Alignment from CESAR ccACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatatcaagtccttccattcagtactctctcccccacttctcagccACTGGACCCCTTGAAGAACCGGCGATTGCCTATGTTTGTCGGGCAGCACTTAGGgtaggtgatttgccaacagtaccaatttggggactcaaattgcttgtgag Alignment from Spaln_aa2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatatcaagtccttccattcagtactctctcccccacttctcagCCACTGGACCCCTTGAAGAACCGGCGATTGCCTATGTTTGTCGGGCAGCACTTAGGgtaggtgatttgccaacagtaccaatttggggactcaaattgcttgtgag Alignment from Spaln_nt2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatatcaagtccttccattcagtactctctcccccacttctcagCCACTGGACCCCTTGAAGAACCGGCGATTGCCTATGTTTGTCGGGCAGCACTTAGGgtaggtgatttgccaacagtaccaatttggggactcaaattgcttgtgag Alignment from Pairagon CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatatcaagtccttccattcagtactctctcccccacttctcagCCACTGGACCCCTTGAAGAACCGGCGATTGCCTATGTTTGTCGGGCAGCACTTAGGgtaggtgatttgccaacagtaccaatttggggactcaaattgcttgtgag Alignment from Exonerate_protein2genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatatcaagtccttccattcagtactctctcccccacttctcagCCACTGGACCCCTTGAAGAACCGGCGATTGCCTATGTTTGTCGGGCAGCACTTAGGgtaggtgatttgccaacagtaccaatttggggactcaaattgcttgtgag Alignment from Exonerate_coding2genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatatcaagtccttccattcagtactctctcccccacttctcagCCACTGGACCCCTTGAAGAACCGGCGATTGCCTATGTTTGTCGGGCAGCACTTAGGgtaggtgatttgccaacagtaccaatttggggactcaaattgcttgtgag Alignment from GeneWise CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatatcaagtccttccattcagtactctctcccccacttctcagCCACTGGACCCCTTGAAGAACCGGCGATTGCCTATGTTTGTCGGGCAGCACTTAGGgtaggtgatttgccaacagtaccaatttggggactcaaattgcttgtgag #### Map4k2_ID1627_6 --> 0 - 0 Original Alignment GGGCTCCACCACCTGCATTCT-CAGGGGAAAATTCACCGAGACATTAAG------ tccctgatgtttccatatggcttgaaatatgtctgtcctgactcctgcagGGCCTCCACCACCTGCATTCTCAAGGGAA-AATTCACAGAGACATTAAGGTAGGGgtaagtgttcaagcaagtacatggtatgagggaaagggaagcctagaggt Alignment from CESAR GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG tccctgatgtttccatatggcttgaaatatgtctgtcctgactcctgcagGGCCTCCACCACCTGCATTCTCAAGGGAAAATTCACAGAGACATTAAGgtaggggtaagtgttcaagcaagtacatggtatgagggaaagggaagcctagaggt Alignment from Spaln_aa2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG tccctgatgtttccatatggcttgaaatatgtctgtcctgactcctgcagGGCCTCCACCACCTGCATTCTCAAGGGAAAATTCACAGAGACATTAAGgtaggggtaagtgttcaagcaagtacatggtatgagggaaagggaagcctagaggt Alignment from Spaln_nt2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG tccctgatgtttccatatggcttgaaatatgtctgtcctgactcctgcagGGCCTCCACCACCTGCATTCTCAAGGGAAAATTCACAGAGACATTAAGgtaggggtaagtgttcaagcaagtacatggtatgagggaaagggaagcctagaggt Alignment from Pairagon GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG tccctgatgtttccatatggcttgaaatatgtctgtcctgactcctgcagGGCCTCCACCACCTGCATTCTCAAGGGAAAATTCACAGAGACATTAAGgtaggggtaagtgttcaagcaagtacatggtatgagggaaagggaagcctagaggt Alignment from Exonerate_protein2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG tccctgatgtttccatatggcttgaaatatgtctgtcctgactcctgcagGGCCTCCACCACCTGCATTCTCAAGGGAAAATTCACAGAGACATTAAGgtaggggtaagtgttcaagcaagtacatggtatgagggaaagggaagcctagaggt Alignment from Exonerate_coding2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG tccctgatgtttccatatggcttgaaatatgtctgtcctgactcctgcagGGCCTCCACCACCTGCATTCTCAAGGGAAAATTCACAGAGACATTAAGgtaggggtaagtgttcaagcaagtacatggtatgagggaaagggaagcctagaggt Alignment from GeneWise GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG tccctgatgtttccatatggcttgaaatatgtctgtcctgactcctgcagGGCCTCCACCACCTGCATTCTCAAGGGAAAATTCACAGAGACATTAAGgtaggggtaagtgttcaagcaagtacatggtatgagggaaagggaagcctagaggt #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAA-AGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggaagcaaatgtggccctgggcactttgtttgttgttctacagccGATTTTGGGGTGTCAGATGAGGCAACAGCATCTGTTGCTAAGCAGGCACT-TTTCATAGGCACTCCATACtggtaagttgttccacggcaatgggtgaagggcatattgagaagaccaccag Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggaagcaaatgtggccctgggcactttgtttgttgttctacagccGATTTTGGGGTGTCAGATGAGGCAACAGCATCTGTTGCTAAGCAGGCACTTTTCATAGGCACTCCATACtggtaagttgttccacggcaatgggtgaagggcatattgagaagaccaccag Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaagcaaatgtggccctgggcactttgtttgttgttctacagCCGATTTTGGGGTGTCAGATGAGGCAACAGCATCTGTTGCTAAGCAGGCACTTTTCATAGGCACTCCATACTGgtaagttgttccacggcaatgggtgaagggcatattgagaagaccaccag Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaagcaaatgtggccctgggcactttgtttgttgttctacagCCGATTTTGGGGTGTCAGATGAGGCAACAGCATCTGTTGCTAAGCAGGCACTTTTCATAGGCACTCCATACTGgtaagttgttccacggcaatgggtgaagggcatattgagaagaccaccag Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTC------------TTTCATTGGCACTCCATACTG tggtgtaggaagcaaatgtggccctgggcactttgtttgttgttctacagCCGATTTTGGGGTGTCAGATGAGGCAACAGCATCTGT------------TGCTAAGCAGGCACTTTTCATAGGCACTCCATACTGgtaagttgttccacggcaatgggtgaagggcatattgagaagaccaccag Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaagcaaatgtggccctgggcactttgtttgttgttctacagCCGATTTTGGGGTGTCAGATGAGGCAACAGCATCTGTTGCTAAGCAGGCACTTTTCATAGGCACTCCATACTGgtaagttgttccacggcaatgggtgaagggcatattgagaagaccaccag Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaagcaaatgtggccctgggcactttgtttgttgttctacagCCGATTTTGGGGTGTCAGATGAGGCAACAGCATCTGTTGCTAAGCAGGCACTTTTCATAGGCACTCCATACTGgtaagttgttccacggcaatgggtgaagggcatattgagaagaccaccag Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaagcaaatgtggccctgggcactttgtttgttgttctacagCCGATTTTGGGGTGTCAGATGAGGCAACAGCATCTGTTGCTAAGCAGGCACTTTTCATAGGCACTCCATACTGgtaagttgttccacggcaatgggtgaagggcatattgagaagaccaccag #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaaggACCCAGAATTTCCACCACTTCCCGCAAGC-AGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaaggACCCAGAATTTCCACCACTTCCCGCAAGCAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCCGCAAGCAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCCGCAAGCAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGC---------------------------------------------------- cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCCGCAAGCAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAGTTTGTAGGGGAGAATAGCTGGAGACTTGAGCTTTTGAAAAAGTGACCTG Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCCGCAAGCAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCCGCAAGCAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCCGCAAGCAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTC-ACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTCACCCAAC-CCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTCACCCAACCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTCACCCAACCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTCACCCAACCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCTCCGGC-CCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTCACCCAAC-CCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTCACCCAACCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTCACCCAACCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTCACCCAACCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGG-AAAAGAGGAACTGAGCgggtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from CESAR TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTGAGCgggtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Pairagon TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGC-CATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTC-TCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from CESAR CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Pairagon CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Exonerate_protein2genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Exonerate_coding2genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from GeneWise CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTC-ACTTGGGTTCACCCTGTGACTCGAg tgccaaatgtaggttagctgtaaactggtcctctgtattgtatattgcagATGGGTGCCTGCTTCACCAAGGTCTCTAATGGCTGTCCCCTGCAGATTCATGCTGCTGTCCACTTGGGTTC-CCCTGTGACACGAggtatgtgtaggtagactagacgcgataacttgggaacccacgaccttgag Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgccaaatgtaggttagctgtaaactggtcctctgtattgtatattgcagATGGGTGCCTGCTTCACCAAGGTCTCTAATGGCTGTCCCCTGCAGATTCATGCTGCTGTCCACTTGGGTTCCCCTGTGACACGAggtatgtgtaggtagactagacgcgataacttgggaacccacgaccttgag Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgccaaatgtaggttagctgtaaactggtcctctgtattgtatattgcagATGGGTGCCTGCTTCACCAAGGTCTCTAATGGCTGTCCCCTGCAGATTCATGCTGCTGTCCACTTGGGTTCCCCTGTGACACGAGgtatgtgtaggtagactagacgcgataacttgggaacccacgaccttgag Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTC-ACTTGGGTTCACCCTGTGACTCGAG tgccaaatgtaggttagctgtaaactggtcctctgtattgtatattgcagATGGGTGCCTGCTTCACCAAGGTCTCTAATGGCTGTCCCCTGCAGATTCATGCTGCTGTCCACTTGGGTTC-CCCTGTGACACGAGgtatgtgtaggtagactagacgcgataacttgggaacccacgaccttgag Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGT-CACTTGGGTTCACCCTGTGACTCGAG tgccaaatgtaggttagctgtaaactggtcctctgtattgtatattgcagATGGGTGCCTGCTTCACCAAGGTCTCTAATGGCTGTCCCCTGCAGATTCATGCTGCTGTCCACTTGGGTTC-CCCTGTGACACGAGgtatgtgtaggtagactagacgcgataacttgggaacccacgaccttgag Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgccaaatgtaggttagctgtaaactggtcctctgtattgtatattgcagATGGGTGCCTGCTTCACCAAGGTCTCTAATGGCTGTCCCCTGCAGATTCATGCTGCTGTCCACTTGGGTTCCCCTGTGACACGAGgtatgtgtaggtagactagacgcgataacttgggaacccacgaccttgag Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgccaaatgtaggttagctgtaaactggtcctctgtattgtatattgcagATGGGTGCCTGCTTCACCAAGGTCTCTAATGGCTGTCCCCTGCAGATTCATGCTGCTGTCCACTTGGGTTCCCCTGTGACACGAGgtatgtgtaggtagactagacgcgataacttgggaacccacgaccttgag Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgccaaatgtaggttagctgtaaactggtcctctgtattgtatattgcagATGGGTGCCTGCTTCACCAAGGTCTCTAATGGCTGTCCCCTGCAGATTCATGCTGCTGTCCACTTGGGTTCCCCTGTGACACGAGgtatgtgtaggtagactagacgcgataacttgggaacccacgaccttgag #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTG-AACAATGTGTTGCTGTCGCTCTCAg gtgccgcttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCGCTACTCATGGCTCTACTGTGTGCAACAATGTAT-GCTGGCACTCTCAggtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from CESAR CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg gtgacgcttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCGCTACTCATGGCTCTACTGTGTGCAACAATGTATGCTGGCACTCTCAggtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Spaln_aa2Genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtgccgcttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCGCTACTCATGGCTCTACTGTGTGCAACAATGTATGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Spaln_nt2Genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTG-AACAATGTGTTGCTGTCGCTCTCAG gtgccgcttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCGCTACTCATGGCTCTACTGTGTGCAACAATGT-ATGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Pairagon CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTG-AACAATGTGTTGCTGTCGCTCTCAG gtgccgcttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCGCTACTCATGGCTCTACTGTGTGCAACAATGTA-TGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Exonerate_protein2genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtgccgcttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCGCTACTCATGGCTCTACTGTGTGCAACAATGTATGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Exonerate_coding2genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtgccgcttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCGCTACTCATGGCTCTACTGTGTGCAACAATGTATGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from GeneWise CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtgccgcttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCGCTACTCATGGCTCTACTGTGTGCAACAATGTATGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt #### Map4k2_ID1649_28 --> 2 - 1 Original Alignment agGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACA-GTCCTGGTCAGCTTTGAAc tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagagGGGATTCCAGGCCCTGCACAACAAGTAATCCAGGTGGATCGGGACAAACGTCT-GGTCAGCTTTGAAcgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from CESAR agGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagagGGGATTCCAGGCCCTGCACAACAAGTAATCCAGGTGGATCGGGACAAACGTCTGGTCAGCTTTGAAcgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Spaln_aa2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCAGGTGGATCGGGACAAACGTCTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Spaln_nt2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCAGGTGGATCGGGACAAACGTCTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Pairagon AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCAGGTGGATCGGGACAAACGTCTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Exonerate_protein2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCAGGTGGATCGGGACAAACGTCTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Exonerate_coding2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCAGGTGGATCGGGACAAACGTCTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from GeneWise AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCAGGTGGATCGGGACAAACGTCTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc #### Map4k2_ID1652_31 --> 0 - 2 Original Alignment GTGACGCAGGAG-ATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACag ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGCATAACAG-TGATGCTAGGATCTTCCGAGTGCTTGGAGCCCATaggtaggtgcaaaacaggcctccttgatttgtaaagttgtagggtattgcta Alignment from CESAR GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACag ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGCATAACAGTGATGCTAGGATCTTCCGAGTGCTTGGAGCCCATaggtaggtgcaaaacaggcctccttgatttgtaaagttgtaggggaactcag Alignment from Spaln_aa2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGCATAACAGTGATGCTAGGATCTTCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggtattgcta Alignment from Spaln_nt2Genome GTGACGCAGGAG-ATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGCATAACAG-TGATGCTAGGATCTTCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggtattgcta Alignment from Pairagon GTGACGCAGGAG-ATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGCATAACAG-TGATGCTAGGATCTTCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggtattgcta Alignment from Exonerate_protein2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGCATAACAGTGATGCTAGGATCTTCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggtattgcta Alignment from Exonerate_coding2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGCATAACAGTGATGCTAGGATCTTCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggtattgcta Alignment from GeneWise GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGCATAACAGTGATGCTAGGATCTTCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggtattgcta #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGC-CTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCCTTGGCC-GGCCTCCATTCAGAATGGAAAAGACaggtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACaggtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAG-ACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGCACTCAGAGTA-CAATGCAGAAAACAAGCGCCCTGAGGAAGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGCACTCAGAGTACAATGCAGAAAACAAGCGCCCTGAGGAAGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGCACTCAGAGTACAATGCAGAAAACAAGCGCCCTGAGGAAGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGCACTCAGAGTACAATGCAGAAAACAAGCGCCCTGAGGAAGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAG---ACTACTGCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAG-ACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGCACTCAGAGT-ACAATGCAGAAAACAAGCGCCCTGAGGAAGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTA---CTGCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGCACTCAGAGTACAATGCAGAAAACAAGCGCCCTGAGGAAGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGCACTCAGAGTACAATGCAGAAAACAAGCGCCCTGAGGAAGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGCACTCAGAGTACAATGCAGAAAACAAGCGCCCTGAGGAAGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTACCTAGTG-GCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttaggaGAGGTGTTTGATTATCTAGTGCGCTCATGGCA-GATGAAAGAAAAAGAGGCTCGAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from CESAR gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttaggaGAGGTGTTTGATTATCTAGTGCGCTCATGGCAGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCTAGTGCGCTCATGGCAGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCTAGTGCGCTCATGGCAGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Pairagon GAGAGGTGTTTGATTACCTAGTG-GCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCTAGTGCGCTCATGGCA-GATGAAAGAAAAAGAGGCTCGAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCTAGTGCGCTCATGGCAGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCTAGTGCGCTCATGGCAGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCTAGTGCGCTCATGGCAGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat #### Mark2_ID2116_5 --> 2 - 1 Original Alignment ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTC-ATGGAGTATGCCAGTGGCg aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagttAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTCATGG-GTATGCCAGTGGTggtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from CESAR ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagttAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTCATGGGTATGCCAGTGGTggtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Spaln_aa2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTCATGGGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Spaln_nt2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTCATGGGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Pairagon TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTG-TCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTCATGG-GTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Exonerate_protein2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTCATGGGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Exonerate_coding2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTCATGGGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from GeneWise TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTCATGGGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAA-GAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAACGAAGGCATTC-TCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAACGAAGGCATTCTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAACGAAGGCATTCTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAA-GAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAACGAAGGCATT-CTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAA-GAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAACGAAGGCATTCTC-TGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAACGAAGGCATTCTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAACGAAGGCATTCTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAACGAAGGCATTCTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTG-AAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTCAAT---------------GTTTCTTACTTGCTTCAAGGCAG-TTCTGGCATTGAGAAGGGAGCCCGGCATACAggtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTC---------------AATGTTTCTTACTTGCTTCAAGGCAGTTCTGGCATTGAGAAGGGAGCCCGGCATACAggtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTCAAT---------------GTTTCTTACTTGCTTCAAGGCAGTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTT-TTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTCAA---------------TGTTTCTTACTTGCTTCAAGGCAG-TTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTT-TTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTCAA---------------TGTTTCTTACTTGCTTCAAGGCAGTT-CTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTC---------------AATGTTTCTTACTTGCTTCAAGGCAGTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTC---------------AATGTTTCTTACTTGCTTCAAGGCAGTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTC---------------AATGTTTCTTACTTGCTTCAAGGCAGTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGG-CGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagtGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCCGGACATTTC-GAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from CESAR tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagtGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCCGGACATTTCGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCCGGACATTTCGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCCGGACATTTCGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGG-CGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCCGGACA-TTTCGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCCGGACATTTCGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCCGGACATTTCGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCCGGACATTTCGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac #### Ms4a5_ID3161_4 --> 0 - 0 Original Alignment ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGAT-GGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATCGGTATGC-GTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from CESAR ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATCGGTATGCGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Spaln_aa2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATCGGTATGCGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Spaln_nt2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATCGGTATGCGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Pairagon ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGAT-GGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATCGGTATGC-GTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Exonerate_protein2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATCGGTATGCGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Exonerate_coding2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATCGGTATGCGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from GeneWise ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATCGGTATGCGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGC-AAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCCACATTCC-AGCTGAGATCCCAGATCATTTGGCAGAGggtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCCACATTCCAGCTGAGATCCCAGATCATTTGGCAGAGggtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCCACATTCCAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCCACATTCCAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCCACATTCCAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCCACATTCCAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCCACATTCCAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCAAGCATA-GTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTT-TTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Pairagon CTACCCTGGAAGTCACTTGCAAGCATA-GTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTT-TTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAG-ATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa gcctatttcctttactacaaactttctatgtcctctttattttctttcagtACTAAGCCAAATCCGAACCAGCATCA-CTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACagtatgctggaagtgtgaacatggttggttagtgtggtcccagttggctta Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa gcctatttcctttactacaaactttctatgtcctctttattttctttcagtACTAAGCCAAATCCGAACCAGCATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACagtatgctggaagtgtgaacatggttggttagtgtggtcccagttggctta Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcctatttcctttactacaaactttctatgtcctctttattttctttcagTACTAAGCCAAATCCGAACCAGCATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtatgctggaagtgtgaacatggttggttagtgtggtcccagttggctta Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcctatttcctttactacaaactttctatgtcctctttattttctttcagTACTAAGCCAAATCCGAACCAGCATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtatgctggaagtgtgaacatggttggttagtgtggtcccagttggctta Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcctatttcctttactacaaactttctatgtcctctttattttctttcagTACTAAGCCAAATCCGAACCAGCATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtatgctggaagtgtgaacatggttggttagtgtggtcccagttggctta Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcctatttcctttactacaaactttctatgtcctctttattttctttcagTACTAAGCCAAATCCGAACCAGCATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtatgctggaagtgtgaacatggttggttagtgtggtcccagttggctta Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcctatttcctttactacaaactttctatgtcctctttattttctttcagTACTAAGCCAAATCCGAACCAGCATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtatgctggaagtgtgaacatggttggttagtgtggtcccagttggctta Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcctatttcctttactacaaactttctatgtcctctttattttctttcagTACTAAGCCAAATCCGAACCAGCATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtatgctggaagtgtgaacatggttggttagtgtggtcccagttggctta #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAA-ATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg ggctaagcacccaggagattcttctctccttttggcttttatgtggccaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAACATTCACC-TCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggttggcaggatgactttttcgagcaaggtcagatcttctatttcggccca Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg ggctaagcacccaggagattcttctctccttttggcttttatgtggccaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggttggcaggatgactttttcgagcaaggtcagatcttctatttctcaagg Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgttggcaggatgactttttcgagcaaggtcagatcttctatttcggccca Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgttggcaggatgactttttcgagcaaggtcagatcttctatttcggccca Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgttggcaggatgactttttcgagcaaggtcagatcttctatttcggccca Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgttggcaggatgactttttcgagcaaggtcagatcttctatttcggccca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGAT------------------------------------------------------ ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGGTTGGCAGGATGACTTTTTCGAGCAAGGTCAGATCTTCTATTTCGGCCCA #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAA-CTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACCTGAACT-CCAAACAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACCTGAACTCCAAACAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACCTGAACTCCAAACAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACCTGAACTCCAAACAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAA-CTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACCTGAACTCC-AAACAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACCTGAACTCCAAACAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACCTGAACTCCAAACAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACCTGAACTCCAAACAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac #### Myof_ID7493_9 --> 0 - 0 Original Alignment GTTTATAATTCCCATTCTTTGAGG-GCAGATTGTCTGATGGGGGAATTTAAG taagtgttcgggaggaaagaattttggcagctactttctggactctatagATTTACAATTCACATTCTTTGAGACGCAGATTGTT-TATGGGGGAATTTAAGgtaagagacacaaccatcatgttcaatgagattagagtaagagctactaa Alignment from CESAR GTTTATAATTCCCATTCTTTGAGG-GCAGATTGTCTGATGGGGGAATTTAAG tgagtgttcgggaggaaagaattttggcagctactttctggactctatagATTTACAATTCACATTCTTTGAGACGCAGATTGTT-TATGGGGGAATTTAAGgtaagagacacaaccatcatgttcaatgagattagagtaagagctactaa Alignment from Spaln_aa2Genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG taagtgttcgggaggaaagaattttggcagctactttctggactctatagATTTACAATTCACATTCTTTGAGACGCAGATTGTTTATGGGGGAATTTAAGgtaagagacacaaccatcatgttcaatgagattagagtaagagctactaa Alignment from Spaln_nt2Genome GTTTATAATTCCCATTCTTTGAGG-GCAGATTGTCTGATGGGGGAATTTAAG taagtgttcgggaggaaagaattttggcagctactttctggactctatagATTTACAATTCACATTCTTTGAGACGCAGATTGT-TTATGGGGGAATTTAAGgtaagagacacaaccatcatgttcaatgagattagagtaagagctactaa Alignment from Pairagon GTTTATAATTCCCATTCTTTGAGG-GCAGATTGTCTGATGGGGGAATTTAAG taagtgttcgggaggaaagaattttggcagctactttctggactctatagATTTACAATTCACATTCTTTGAGACGCAGATTGTTT-ATGGGGGAATTTAAGgtaagagacacaaccatcatgttcaatgagattagagtaagagctactaa Alignment from Exonerate_protein2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG taagtgttcgggaggaaagaattttggcagctactttctggactctatagATTTACAATTCACATTCTTTGAGACGCAGATTGTTTATGGGGGAATTTAAGgtaagagacacaaccatcatgttcaatgagattagagtaagagctactaa Alignment from Exonerate_coding2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG taagtgttcgggaggaaagaattttggcagctactttctggactctatagATTTACAATTCACATTCTTTGAGACGCAGATTGTTTATGGGGGAATTTAAGgtaagagacacaaccatcatgttcaatgagattagagtaagagctactaa Alignment from GeneWise GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAGATTGATGTTGGATTTGTT-- taagtgttcgggaggaaagaattttggcagctactttctggactctatagATTTACAATTCACATTCTTTGAGACGCAGATTGTTTATGGGGGAATTTAAGGTAAGAGACACAACCATCATgttcaatgagattagagtaagagctactaa #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCC-CACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcatgcatttcagtgggtgcctctctcccatagtCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCTCCACAAAA-GAGGCCCCCTAAACTGGCCAATAAGgtaagacagtgcaagagtgaaggcttctactcacctgcgttctatctctg Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcatgcatttcagtgggtgcctctctcccatagtCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCTCCACAAAAGAGGCCCCCTAAACTGGCCAATAAGgtaagacagtgcaagagtgaaggcttctactcacctgcgttctatctctg Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcatgcatttcagtgggtgcctctctcccatagTCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCTCCACAAAAGAGGCCCCCTAAACTGGCCAATAAGgtaagacagtgcaagagtgaaggcttctactcacctgcgttctatctctg Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcatgcatttcagtgggtgcctctctcccatagTCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCTCCACAAAAGAGGCCCCCTAAACTGGCCAATAAGgtaagacagtgcaagagtgaaggcttctactcacctgcgttctatctctg Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcatgcatttcagtgggtgcctctctcccatagTCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCTCCACAAAAGAGGCCCCCTAAACTGGCCAATAAGgtaagacagtgcaagagtgaaggcttctactcacctgcgttctatctctg Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcatgcatttcagtgggtgcctctctcccatagTCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCTCCACAAAAGAGGCCCCCTAAACTGGCCAATAAGgtaagacagtgcaagagtgaaggcttctactcacctgcgttctatctctg Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcatgcatttcagtgggtgcctctctcccatagTCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCTCCACAAAAGAGGCCCCCTAAACTGGCCAATAAGgtaagacagtgcaagagtgaaggcttctactcacctgcgttctatctctg Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcatgcatttcagtgggtgcctctctcccatagTCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCTCCACAAAAGAGGCCCCCTAAACTGGCCAATAAGgtaagacagtgcaagagtgaaggcttctactcacctgcgttctatctctg #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTAAAGCAGGATCTCAC-GATGCGTTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTAAAGCAGGATCTCACGATGCGTTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTAAAGCAGGATCTCACGATGCGTTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTAAAGCAGGATCTCAC-GATGCGTTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTAAAGCAGGATCTCAC-GATGCGTTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTAAAGCAGGATCTCACGATGCGTTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTAAAGCAGGATCTCACGATGCGTTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTAAAGCAGGATCTCACGATGCGTTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAAC-TACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtaggTATTTCATGCTGGTGGTCGCCCTCCAGGCACATGCACAGAACCAAAACCTACACCCTGG-AGCCCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from CESAR gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtaggTATTTCATGCTGGTGGTCGCCCTCCAGGCACATGCACAGAACCAAAACCTACACCCTGGAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Spaln_aa2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCGCCCTCCAGGCACATGCACAGAACCAAAACCTACACCCTGGAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Spaln_nt2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCGCCCTCCAGGCACATGCACAGAACCAAAACCTACACCCTGGAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Pairagon GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAA-CTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCGCCCTCCAGGCACATGCACAGAACCAAAACCTACACCCTGG-AGCCCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Exonerate_protein2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCGCCCTCCAGGCACATGCACAGAACCAAAACCTACACCCTGGAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Exonerate_coding2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCGCCCTCCAGGCACATGCACAGAACCAAAACCTACACCCTGGAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from GeneWise GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCGCCCTCCAGGCACATGCACAGAACCAAAACCTACACCCTGGAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAG-GGCAAGCCCAACCCTGACCAGag tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagaGTTAATCTTCCACCTGAGCAGGTTACACAGGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGC-CAACCCTGACCAGaggtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagaGTTAATCTTCCACCTGAGCAGGTTACACAGGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCAACCCTGACCAGaggtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTGACTGTGG---GGCTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTGACTGTGG---GGCTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAA-GGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagcTATGAAGTACAGCTGGAAAGCAAGGTAAGGCAGAAACGGTC-AGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACaggtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from CESAR cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagcTATGAAGTACAGCTGGAAAGCAAGGTAAGGCAGAAACGGTCAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACaggtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAAAGCAAGGTAAGGCAGAAACGGTCAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAAAGCAAGGTAAGGCAGAAACGGTCAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Pairagon CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAAAGCAAGGTAAGGCAGAAACGGTCAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAAAGCAAGGTAAGGCAGAAACGGTCAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAAAGCAAGGTAAGGCAGAAACGGTCAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAAAGCAAGGTAAGGCAGAAACGGTCAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCA-CAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaAATACTACTCTGCAGGCCCCAGGGAGCAC-ACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaAATACTACTCTGCAGGCCCCAGGGAGCACACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCCAGGGAGCACACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCAC-AGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCCAGGGAGCA-CACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Pairagon CCAATGCTACCCTCCGGG-CACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCCAGGGAGCACA-CCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Exonerate_protein2genome gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaaatactactctgcaggccccagggagcacacctgtacaaggtgtgctcttttcttcgaccaaagatgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCCAGGGAGCACACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCCAGGGAGCACACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGG-ATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGCATCCGATATA-TAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCaggtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgctg Alignment from CESAR ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGG-ATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGCATCCGATAT-ATAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCaggtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgcca Alignment from Spaln_aa2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGCATCCGATATATAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgctg Alignment from Spaln_nt2Genome AGATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGG-ATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacAGATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGCATCCGATATA-TAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgctg Alignment from Pairagon ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGG-ATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGCATCCGATATA-TAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgctg Alignment from Exonerate_protein2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGCATCCGATATATAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgctg Alignment from Exonerate_coding2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGCATCCGATATATAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgctg Alignment from GeneWise ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGCATCCGATATATAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgctg #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGA-GATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCCGATGCCT-TCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCCGATGCCTTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCCGATGCCTTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCCGATGCCTTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGT-GAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCCGATGCCT-TCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCCGATGCCTTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCCGATGCCTTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCCGATGCCTTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTG-ATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttaggtGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCC---ACATTGCATTC-CAAATCTGTTTGTGAGACGGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttaggtGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGCATTCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGCATTCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCA---CATTGCATTCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCA---CATTGCATTCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGCATTCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGCATTCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGCATTCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAAT-GTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATCGTGAAGA-AGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATCGTGAAGAAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATCGTGAAGAAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATCGTGAAGAAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAAT-GTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATCGTGAAGA-AGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATCGTGAAGAAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATCGTGAAGAAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATCGTGAAGAAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa #### Nfkb2_ID9824_2 --> 0 - 1 Original Alignment GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTC-AGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAATTCCAGCCCAACAA-AGTGGAACCTAATGATCCAGCCCCTGAAACAggtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from CESAR GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAATTCCAGCCCAACAAAGTGGAACCTAATGATCCAGCCCCTGAAACAggtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Spaln_aa2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAATTCCAGCCCAACAAAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Spaln_nt2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAATTCCAGCCCAACAAAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Pairagon GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAATTCCAGCCCAACAAAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Exonerate_protein2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAATTCCAGCCCAACAAAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Exonerate_coding2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAATTCCAGCCCAACAAAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from GeneWise GACAATTGCTACGATCCAGGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctag------------------GGGCTGGATGGAATCCCAGATTATGAGGATTTTGAATTCCAGCCCAACAAAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa #### Nfkb2_ID9825_3 --> 2 - 0 Original Alignment ctGATGGCCCCTATCTGGTGATT-GTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagctGATGGCCCCTATCTTGTGATCCGTGG-ACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from CESAR ctGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagctGATGGCCCCTATCTTGTGATCCGTGGACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Spaln_aa2Genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCCGTGGACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Spaln_nt2Genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCCGTGGACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Pairagon CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCCGTGGACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Exonerate_protein2genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCCGTGGACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Exonerate_coding2genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCCGTGGACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from GeneWise acactaccaggatcaaaccaagcataaacctctctttgattggccttcagctgatggcccctatcttgtgatccgtggacagaccaaacaggtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGAC-CTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCCTGG-GACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCCTGGGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCCTGGGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCCTGGGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCCTGGGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCCTGGGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCCTGGGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCCTGGGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagaTTCAATAATTTGGGT------CATGTAACCAAGAAAAACATGATGCGAGATAATGA-ACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTggtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagaTTCAATAATTTGGGT------CATGTAACCAAGAAAAACATGATGCGAGATAATG-AACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTggtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGT------CATGTAACCAAGAAAAACATGATGCGAGATAATGAACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGT------CATGTAACCAAGAAAAACATGATGCGAGATAATGAACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGT------CATGTAACCAAGAAAAACATGATGCGAGATAATGA-ACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGT------CATGTAACCAAGAAAAACATGATGCGAGATAATGAACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGT------CATGTAACCAAGAAAAACATGATGCGAGATAATGAACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGT------CATGTAACCAAGAAAAACATGATGCGAGATAATGAACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAG-CCTGTGATCTCCCAGCCCATCCATGACAGCa aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCCTGTAATCT-CCAGCCAATCCATGACAGCagtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCCTGTAATCTCCAGCCAATCCATGACAGCagtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCCTGTAATCTCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCCTGTAATCTCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAG-CCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCCTGTAATCT-CCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCCTGTAATCTCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCCTGTAATCTCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCCTGTAATCTCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAACCTGAAGATCTCC-CGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagaaTCTTCAGGGGCCTTGAACTTGAAGATCTCTCGAGATGG-CAAGACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAggtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from CESAR agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagaaTCTTCAGGGGCCTTGAACTTGAAGATCTCTCGAGATGGCAAGACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAggtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTCGAGATGGCAAGACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTCGAGATGGCAAGACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Pairagon AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTCGAGATGGCAAGACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTCGAGATGGCAAGACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTCGAGATGGCAAGACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTCGAGATGGCAAGACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGG-GGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagacAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTCGGGTCTG-TGGGGGTTATGGAGATGCTGGGGGAggtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagacAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTCGGGTCTGTGGGGGTTATGGAGATGCTGGGGGAggtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTCGGGTCTGTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTCGGGTCTGTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTCGGGTCTGTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTCGGGTCTGTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTCGGGTCTGTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTCGGGTCTGTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCA-GACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCACGATGCAC-TGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from CESAR ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCACGATGCACTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCACGATGCACTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCA-GACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCACGATGCAC-TGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCAC-----------CGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCACGATGCAC-----------TGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCACGATGCACTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCACGATGCACTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCACGATGCACTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATA-GCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagcCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTCGCCCATGTCA-TTACCATGCTCAGTACCTTGGTGTAATAAACCTCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgggag Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATA-GCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagcCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTCGCCCATGTCA-TTACCATGCTCAGTACCTTGGTGTAATAAACCTCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccactcc Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTCGCCCATGTCATTACCATGCTCAGTACCTTGGTGTAATAAACCTCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgggag Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATA-GCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTCGCCCATGTCA-TTACCATGCTCAGTACCTTGGTGTAATAAACCTCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgggag Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGA-TAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTCGCCCATGTCA-TTACCATGCTCAGTACCTTGGTGTAATAAACCTCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgggag Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTCGCCCATGTCATTACCATGCTCAGTACCTTGGTGTAATAAACCTCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgggag Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTCGCCCATGTCATTACCATGCTCAGTACCTTGGTGTAATAAACCTCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgggag Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTCGCCCATGTCATTACCATGCTCAGTACCTTGGTGTAATAAACCTCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgggag #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAG-AGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGCAGGCAGGGGG-CCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGCAGGCAGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGCAGGCAGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGCAGGCAGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGCAGGCAGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGCAGGCAGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGCAGGCAGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGCAGGCAGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGG-ACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGCACCT-TGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGCACCTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGCACCTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGCACCTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGCACCTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGCACCTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGCACCTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGCACCTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCT-GAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaaggtGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAG-CACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaaggtGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGCACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGCACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGCACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGCACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGCACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGCACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGCACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAATGCT-GCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCTGCTAAATGCTCGCTCAGA-TACCACAGAGCCACCCTTGGCCCCACCCACCCCGGTAggtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCTGCTAAATGCTCGCTCAGATACCACAGAGCCACCCTTGGCCCCACCCACCCCGGTAggtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCTGCTAAATGCTCGCTCAGATACCACAGAGCCACCCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCTGCTAAATGCTCGCTCAGATACCACAGAGCCACCCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Pairagon GTGAAGACTCTGCTGCTAAATGCT-GCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCTGCTAAATGCTCGCTCAG-ATACCACAGAGCCACCCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCTGCTAAATGCTCGCTCAGATACCACAGAGCCACCCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCTGCTAAATGCTCGCTCAGATACCACAGAGCCACCCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCTGCTAAATGCTCGCTCAGATACCACAGAGCCACCCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTG-GGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagggCCAGGGCTGTCCCTACGGGGATACAG-CCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcatctctcctcgtttc Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagggCCAGGGCTGTCCCTACGGGGATACAGCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcagtgcccgggcctcc Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTACGGGGATACAGCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcatctctcctcgtttc Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTG-GGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTACGGGGATACAG-CCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcatctctcctcgtttc Alignment from Pairagon GGCCAGGGCTGTCCCTG-GGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTACGGGGATACAG-CCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcatctctcctcgtttc Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTACGGGGATACAGCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcatctctcctcgtttc Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTACGGGGATACAGCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcatctctcctcgtttc Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTACGGGGATACAGCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcatctctcctcgtttc #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment CTGGCTGGTGGGGACTTGGTGGGTCTA-TTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gttagacactatgctgaagcctcaatcagtgcccgggcctccacttgcagTCAGCTGGTGGGGACTTGGTGGGCCTGCTTGGAGGCCT-ATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCCAGTAAAggtacaaagaggacaggcaccctagatggcatgtctaagcttagaggagac Alignment from CESAR CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gttagacactatgctgaagcctcaatcagtgcccgggcctccacttgcagTCAGCTGGTGGGGACTTGGTGGGCCTGCTTGGAGGCCTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCCAGTAAAggtacaaagaggacaggcaccctagatggcatgtctaagcttagaggagac Alignment from Spaln_aa2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaagcctcaatcagtgcccgggcctccacttgcagTCAGCTGGTGGGGACTTGGTGGGCCTGCTTGGAGGCCTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCCAGTAAAGgtacaaagaggacaggcaccctagatggcatgtctaagcttagaggagac Alignment from Spaln_nt2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaagcctcaatcagtgcccgggcctccacttgcagTCAGCTGGTGGGGACTTGGTGGGCCTGCTTGGAGGCCTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCCAGTAAAGgtacaaagaggacaggcaccctagatggcatgtctaagcttagaggagac Alignment from Pairagon CTGGCTGGTGGGGACTTGGTGGGTCTA-TTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaagcctcaatcagtgcccgggcctccacttgcagTCAGCTGGTGGGGACTTGGTGGGCCTGCTTGGAGGCC-TATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCCAGTAAAGgtacaaagaggacaggcaccctagatggcatgtctaagcttagaggagac Alignment from Exonerate_protein2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaagcctcaatcagtgcccgggcctccacttgcagTCAGCTGGTGGGGACTTGGTGGGCCTGCTTGGAGGCCTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCCAGTAAAGgtacaaagaggacaggcaccctagatggcatgtctaagcttagaggagac Alignment from Exonerate_coding2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaagcctcaatcagtgcccgggcctccacttgcagTCAGCTGGTGGGGACTTGGTGGGCCTGCTTGGAGGCCTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCCAGTAAAGgtacaaagaggacaggcaccctagatggcatgtctaagcttagaggagac Alignment from GeneWise CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTG------------------------------------------------------------ gttagacactatgctgaagcctcaatcagtgcccgggcctccacttgcagTCAGCTGGTGGGGACTTGGTGGGCCTGCTTGGAGGCCTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCCAGTAAAGGTACAAAGAGGACAGGCACCCTAGATGGCATGTCTAAGCTTAGAGGAGAC #### Nmrk1_ID4439_5 --> 1 - 2 Original Alignment gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTG-ACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag aggagatgggaagaacattgtcttgggcaactggctttcttttcttctaggCTTCTGGATACGATATGGAATAGAAGTTACTGCCTACACTGTTC-ATATGACCAATGTAAGAGGAGAAGGaggtaagcctggaggctgtctgtgaattgtaagcagaatcatgaccctcaag Alignment from CESAR gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag aggagatgggaagaacattgtcttgggcaactggctttcttttcttctaggCTTCTGGATACGATATGGAATAGAAGTTACTGCCTACACTGTTCATATGACCAATGTAAGAGGAGAAGGaggtaagcctggaggctgtctgtgaattgtaagcagaatcatgaccctcaag Alignment from Spaln_aa2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG aggagatgggaagaacattgtcttgggcaactggctttcttttcttctagGCTTCTGGATACGATATGGAATAGAAGTTACTGCCTACACTGTTCATATGACCAATGTAAGAGGAGAAGGAGgtaagcctggaggctgtctgtgaattgtaagcagaatcatgaccctcaag Alignment from Spaln_nt2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG aggagatgggaagaacattgtcttgggcaactggctttcttttcttctagGCTTCTGGATACGATATGGAATAGAAGTTACTGCCTACACTGTTCATATGACCAATGTAAGAGGAGAAGGAGgtaagcctggaggctgtctgtgaattgtaagcagaatcatgaccctcaag Alignment from Pairagon GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG aggagatgggaagaacattgtcttgggcaactggctttcttttcttctagGCTTCTGGATACGATATGGAATAGAAGTTACTGCCTACACTGTTCATATGACCAATGTAAGAGGAGAAGGAGgtaagcctggaggctgtctgtgaattgtaagcagaatcatgaccctcaag Alignment from Exonerate_protein2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG aggagatgggaagaacattgtcttgggcaactggctttcttttcttctagGCTTCTGGATACGATATGGAATAGAAGTTACTGCCTACACTGTTCATATGACCAATGTAAGAGGAGAAGGAGgtaagcctggaggctgtctgtgaattgtaagcagaatcatgaccctcaag Alignment from Exonerate_coding2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG aggagatgggaagaacattgtcttgggcaactggctttcttttcttctagGCTTCTGGATACGATATGGAATAGAAGTTACTGCCTACACTGTTCATATGACCAATGTAAGAGGAGAAGGAGgtaagcctggaggctgtctgtgaattgtaagcagaatcatgaccctcaag Alignment from GeneWise GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG aggagatgggaagaacattgtcttgggcaactggctttcttttcttctagGCTTCTGGATACGATATGGAATAGAAGTTACTGCCTACACTGTTCATATGACCAATGTAAGAGGAGAAGGAGgtaagcctggaggctgtctgtgaattgtaagcagaatcatgaccctcaag #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGACCCGATGAAATTCTAT-ACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcatttaactaaatttgttttttctttctccacttaaggaGATGTTTTGAATATTGACCCCATGAAATTTTATCACCCCTC-ATTCCAGACACTGTTTACATTACATGCAggcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from CESAR gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcatttaactaaatttgttttttctttctccacttaaggaGATGTTTTGAATATTGACCCCATGAAATTTTATCACCCCTCATTCCAGACACTGTTTACATTACATGCAggcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTGACCCCATGAAATTTTATCACCCCTCATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTGACCCCATGAAATTTTATCACCCCTCATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Pairagon GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACA-----------AGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTGACCCCATGAAATTTTAT-----------CACCCCTCATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTGACCCCATGAAATTTTATCACCCCTCATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTGACCCCATGAAATTTTATCACCCCTCATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from GeneWise CTC TTGgtctccctttcatttaactaaatttgttttttctttctccacttaaggagatgttttgaatattgaccccatgaaattttatcacccctcattccagacactgtttacattacatgcaggcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTC-CACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCCATTGTG-TCAAACTGCTTTTCATATTCTTTCTGGACCAggtgggatagtccatttggtctccctttcatttaactaaatttaggctcaa Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCCATTGTGTCAAACTGCTTTTCATATTCTTTCTGGACCAggtgggatagtccatttggtctccctttcatttaactaaatttgttttttc Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCCATTGTGTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttaggctcaa Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCCATTGTGTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttaggctcaa Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCT-CCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCCATTGTG-TCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttaggctcaa Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCCATTGTGTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttaggctcaa Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCCATTGTGTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttaggctcaa Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCCATTGTGTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttaggctcaa #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCT-GAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagtgGCTGAAAGTGGAGATATCCAGGCTCGAAATGT-GGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACCGCCAATAATTACCCTAATaggtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagtgGCTGAAAGTGGAGATATCCAGGCTCGAAATGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACCGCCAATAATTACCCTAATaggtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTCGAAATGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTCGAAATGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTCGAAATGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTCGAAATGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTCGAAATGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTCGAAATGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTAC-TGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagatCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACCTGGGCAG-AAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAaggtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagatCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACCTGGGCAGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAaggtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACCTGGGCAGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACCTGGGCAGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACCTGGGCAGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACCTGGGCAGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACCTGGGCAGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACCTGGGCAGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTAC-GATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATCGATA-TATTGACCCTACTGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTCTGCTCTTGATGCCggtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATCGATATATTGACCCTACTGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTCTGCTCTTGATGCCggtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATCGATATATTGACCCTACTGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTCTGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATCGATATATTGACCCTACTGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTCTGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTA-CGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATCGATAT-ATTGACCCTACTGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTCTGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATCGATATATTGACCCTACTGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTCTGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATCGATATATTGACCCTACTGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTCTGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATCGATATATTGACCCTACTGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTCTGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGC-CCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTTCAGGGCCCAGTTC-AATC---------CATCAGATTggtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTTCAGGGCCCAGTTCAATC---------CATCAGATTggtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTTCAGGGCCCAGTTCAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Spaln_nt2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGG-CCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTTCAGGGCCCAGTTC-AATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Pairagon CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTC-TGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTTCAGGGCCCAGTTC-AATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTTCAGGGCCCAGTTCAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTTCAGGGCCCAGTTCAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTTCAGGGCCCAGTTCAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGC-TCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGC-GACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Exonerate_coding2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta #### Nt5c2_ID10037_16 --> 1 - 0 Original Alignment gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGT-TCCATCCAGAGACGGATTAAG caacctagggagtgtgttctcttagaccctgatctcccttgtcatcgcaggCATTTGGACAGCAGTAGC------------AATATTAGTCCCTA-CCAGAGACAGATTAAGgtgaggagattgcatctggggggcaatatcaggtgtaagttgttccagta Alignment from CESAR gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG caacctagggagtgtgttctcttagaccctgatctcccttgtcatcgcaggCATTTGGACAGCAGTAGCAAT------------ATTAGTCCCTACCAGAGACAGATTAAGgtgaggagattgcatctggggggcaatatcaggtgtaagttgttccagta Alignment from Spaln_aa2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG caacctagggagtgtgttctcttagaccctgatctcccttgtcatcgcagGCATTTGGACAGCAGTAGCAAT------------ATTAGTCCCTACCAGAGACAGATTAAGgtgaggagattgcatctggggggcaatatcaggtgtaagttgttccagta Alignment from Spaln_nt2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG caacctagggagtgtgttctcttagaccctgatctcccttgtcatcgcagGCATTTGGACAGCAGTAGCAAT------------ATTAGTCCCTACCAGAGACAGATTAAGgtgaggagattgcatctggggggcaatatcaggtgtaagttgttccagta Alignment from Pairagon GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG caacctagggagtgtgttctcttagaccctgatctcccttgtcatcgcagGCATTTGGACAGCAGTAGCAAT------------ATTAGTCCCTACCAGAGACAGATTAAGgtgaggagattgcatctggggggcaatatcaggtgtaagttgttccagta Alignment from Exonerate_protein2genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG caacctagggagtgtgttctcttagaccctgatctcccttgtcatcgcagGCATTTGGACAGCAGTAGCAAT------------ATTAGTCCCTACCAGAGACAGATTAAGgtgaggagattgcatctggggggcaatatcaggtgtaagttgttccagta Alignment from Exonerate_coding2genome caacctagggagtgtgttctcttagaccctgatctcccttgtcatcgcaggcatttggacagcagtagcaatattagtccctaccagagacagattaaggtgaggagattgcatctggggggcaatatcaggtgtaagttgttccagta Alignment from GeneWise caacctagggagtgtgttctcttagaccctgatctcccttgtcatcgcaggcatttggacagcagtagcaatattagtccctaccagagacagattaaggtgaggagattgcatctggggggcaatatcaggtgtaagttgttccagta #### Nt5c2_ID10046_7 --> 2 - 2 Original Alignment agACCTACCTGTTGGCCTGCCTCGTAGAT-TTTTTTACTAATTGTCCCAGATACACCag gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagagACTCACCTGTTGGCCTGCCTTGTAGATCTTTTTTACTA-CTGTCCCAGATACACCaggtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from CESAR agACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCag gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagagACTCACCTGTTGGCCTGCCTTGTAGATCTTTTTTACTACTGTCCCAGATACACCaggtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Spaln_aa2Genome AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCTGCCTTGTAGATCTTTTTTACTACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Spaln_nt2Genome AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCTGCCTTGTAGATCTTTTTTACTACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Pairagon AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCTGCCTTGTAGATCTTTTTTACTACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Exonerate_protein2genome AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCTGCCTTGTAGATCTTTTTTACTACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Exonerate_coding2genome AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCTGCCTTGTAGATCTTTTTTACTACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from GeneWise AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCTGCCTTGTAGATCTTTTTTACTACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG gtgttctgcaccatggatatgtcctgggtgactttttcttcccatgttaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCT-TGTGGAAACACAGgtacaggaatttaccttccagctggctgctattacattcagggttattaa Alignment from CESAR gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtgttctgcaccatggatatgtcctgggtgactttttcttcccatgttaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTGTGGAAACACAGgtacaggaatttaccttccagctggctgctattacattcagggttattaa Alignment from Spaln_aa2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtgttctgcaccatggatatgtcctgggtgactttttcttcccatgttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTGTGGAAACACAGgtacaggaatttaccttccagctggctgctattacattcagggttattaa Alignment from Spaln_nt2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG gtgttctgcaccatggatatgtcctgggtgactttttcttcccatgttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATC-TTGTGGAAACACAGgtacaggaatttaccttccagctggctgctattacattcagggttattaa Alignment from Pairagon GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG gtgttctgcaccatggatatgtcctgggtgactttttcttcccatgttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATC-TTGTGGAAACACAGgtacaggaatttaccttccagctggctgctattacattcagggttattaa Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtgttctgcaccatggatatgtcctgggtgactttttcttcccatgttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTGTGGAAACACAGgtacaggaatttaccttccagctggctgctattacattcagggttattaa Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtgttctgcaccatggatatgtcctgggtgactttttcttcccatgttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTGTGGAAACACAGgtacaggaatttaccttccagctggctgctattacattcagggttattaa Alignment from GeneWise GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtgttctgcaccatggatatgtcctgggtgactttttcttcccatgttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTGTGGAAACACAGgtacaggaatttaccttccagctggctgctattacattcagggttattaa #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATA-CATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagtTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTG-CCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagtTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCTTCAGGAGACACAGGAGGAACTAGACTTGGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGT---AATAC-ATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTG-CCTTCAGGAGACACAGGAGGAACTAGACTT---GGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGC------------CCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGT---------GGTAATACCACACTGCCTTCAGGAGACACAGGAGGAACTAGACTT---GGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTTGGAACCGAG-AACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTGAGCAATCTAA-AAGTCTGGTCCTACACTTCTTGCAGcagtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from CESAR GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTGAGCAATCTAAAAGTCTGGTCCTACACTTCTTGCAGcagtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Spaln_aa2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTGAGCAATCTAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Spaln_nt2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTGAGCAATCTAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Pairagon GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTGAGCAATCTAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Exonerate_protein2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTGAGCAATCTAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Exonerate_coding2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTGAGCAATCTAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from GeneWise GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTGAGCAATCTAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAAT-GAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctagttctaaagcctacatttggtcttttcctttgttgcgtaaagccCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTCCTTAATCGCATTACCCA-AACCCAACATGATGTCAATGCCTTTGTAGTAGACATAAGTGCCCAAACAgtgagtatctgttttatgaaacctaacagtggggtgaatattgtgctcag Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctagttctaaagcctacatttggtcttttcctttgttgcgtaaagccCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTCCTTAATCGCATTACCCAAACCCAACATGATGTCAATGCCTTTGTAGTAGACATAAGTGCCCAAACAgtgagtatctgttttatgaaacctaacagtggggtgaatattgtgctcag Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctagttctaaagcctacatttggtcttttcctttgttgcgtaaagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTCCTTAATCGCATTACCCAAACCCAACATGATGTCAATGCCTTTGTAGTAGACATAAGTGCCCAAACAgtgagtatctgttttatgaaacctaacagtggggtgaatattgtgctcag Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctagttctaaagcctacatttggtcttttcctttgttgcgtaaagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTCCTTAATCGCATTACCCAAACCCAACATGATGTCAATGCCTTTGTAGTAGACATAAGTGCCCAAACAgtgagtatctgttttatgaaacctaacagtggggtgaatattgtgctcag Alignment from Pairagon CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAAT-GAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctagttctaaagcctacatttggtcttttcctttgttgcgtaaagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTCCTTAATCGCATTACCC-AAACCCAACATGATGTCAATGCCTTTGTAGTAGACATAAGTGCCCAAACAgtgagtatctgttttatgaaacctaacagtggggtgaatattgtgctcag Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gaaatctagttctaaagcctacatttggtcttttcctttgttgcgtaaagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTCCTTAATCGCATTACCCAAACCCAACATGATGTCAATGCCTTTGTAGTAGACATAAGTGCCCAAACAGTGAGT---ATCTGTTTTATGAAACCTAACAGTGGGGTGAATAttgtgct Alignment from Exonerate_coding2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctagttctaaagcctacatttggtcttttcctttgttgcgtaaagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTCCTTAATCGCATTACCCAAACCCAACATGATGTCAATGCCTTTGTAGTAGACATAAGTGCCCAAACAgtgagtatctgttttatgaaacctaacagtggggtgaatattgtgctcag Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctagttctaaagcctacatttggtcttttcctttgttgcgtaaagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTCCTTAATCGCATTACCCAAACCCAACATGATGTCAATGCCTTTGTAGTAGACATAAGTGCCCAAACAgtgagtatctgttttatgaaacctaacagtggggtgaatattgtgctcag #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGC-GATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagatCAATGCTGTTCTGGAAAAGGGGACATGAGTCAAGGAAG-TGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagatCAATGCTGTTCTGGAAAAGGGGACATGAGTCAAGGAAGTGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTCAAGGAAGTGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTCAAGGAAGTGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTCAAGGAAGTGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTCAAGGAAGTGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTCAAGGAAGTGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTCAAGGAAGTGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACCACCAGC-TCCCATCGCTGAAGCCATGCTGACCTGCAGGCATAAGttgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACCACCAGCTCCCATCGCTGAAGCCATGCTGACCTGCAGGCATAAGttgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACCACCAGCTCCCATCGCTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACCACCAGCTCCCATCGCTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACCACCAGCT-CCCATCGCTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACCACCAGCTCCCATCGCTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACCACCAGCTCCCATCGCTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACCACCAGCTCCCATCGCTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt #### Pacs1_ID885_9 --> 0 - 2 Original Alignment GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTACGAACACGTGT-CCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from CESAR GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTACGAACACGTGT-CCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Spaln_aa2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTACGAACACGTGTCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Spaln_nt2Genome GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTACGAACACGTGT-CCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Pairagon GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTACGAACACGTGT-CCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Exonerate_protein2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTACGAACACGTGTCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Exonerate_coding2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTACGAACACGTGTCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from GeneWise GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTACGAACACGTGTCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATG-TTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca taggctttctccttttctgttctatttcattcccttggttttcgtttcaggACAGAGGTGATGCTTTATGG-AGCCCGAGAACTGGTCCGTATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtaagatttgtcattcttttcccgctttgttgaccgacagaaactgaact Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca taggctttctccttttctgttctatttcattcccttggttttcgtttcaggACAGAGGTGATGCTTTATGGAGCCCGAGAACTGGTCCGTATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtaagatttgtcattcttttcccgctttgttgaccgacagaaactgaact Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA taggctttctccttttctgttctatttcattcccttggttttcgtttcagGACAGAGGTGATGCTTTATGGAGCCCGAGAACTGGTCCGTATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtaagatttgtcattcttttcccgctttgttgaccgacagaaactgaact Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA taggctttctccttttctgttctatttcattcccttggttttcgtttcagGACAGAGGTGATGCTTTATGGAGCCCGAGAACTGGTCCGTATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtaagatttgtcattcttttcccgctttgttgaccgacagaaactgaact Alignment from Pairagon GACAGAGGTGATG-TTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA taggctttctccttttctgttctatttcattcccttggttttcgtttcagGACAGAGGTGATGCTTTATGG-AGCCCGAGAACTGGTCCGTATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtaagatttgtcattcttttcccgctttgttgaccgacagaaactgaact Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG taggctttctccttttctgttctatttcattcccttggttttcgtttcagGACAGAGGTGATGCTTTATGGAGCCCGAGAACTGGTCCGTATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGtaagatttgtcattcttttcccgctttgttgaccgacagaaactgaact Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG taggctttctccttttctgttctatttcattcccttggttttcgtttcagGACAGAGGTGATGCTTTATGGAGCCCGAGAACTGGTCCGTATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGtaagatttgtcattcttttcccgctttgttgaccgacagaaactgaact Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG taggctttctccttttctgttctatttcattcccttggttttcgtttcagGACAGAGGTGATGCTTTATGGAGCCCGAGAACTGGTCCGTATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGtaagatttgtcattcttttcccgctttgttgaccgacagaaactgaact #### Pcgf6_ID10083_4 --> 1 - 1 Original Alignment gTTGGACCGGCAGTTACAAGACATAGTA-TACAAATTAGTGATCAATCTAGAGGAAa aagaggtaatattatgctgaccataaatccacctttttttgtgtgtataggTTGGACCGGCAGTTACAAGACATAGTACTACAAGTTAG-GATTGTTCTAGAGGAGagtatgtattagttatctcatagctatgaatcccaaagttttgattctgcc Alignment from CESAR gTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAa aagaggtaatattatgctgaccataaatccacctttttttgtgtgtataggTTGGACCGGCAGTTACAAGACATAGTACTACAAGTTAGGATTGTTCTAGAGGAGagtatgtattagttatctcatagctatgaatcccaaagttttgattctgcc Alignment from Spaln_aa2Genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaggtaatattatgctgaccataaatccacctttttttgtgtgtatagGTTGGACCGGCAGTTACAAGACATAGTACTACAAGTTAGGATTGTTCTAGAGGAGAgtatgtattagttatctcatagctatgaatcccaaagttttgattctgcc Alignment from Spaln_nt2Genome GTTGGACCGGCAGTTACAAGACATAGTA-TACAAATTAGTGATCAATCTAGAGGAAA aagaggtaatattatgctgaccataaatccacctttttttgtgtgtatagGTTGGACCGGCAGTTACAAGACATAGTACTACAAGTTAG-GATTGTTCTAGAGGAGAgtatgtattagttatctcatagctatgaatcccaaagttttgattctgcc Alignment from Pairagon GTTGGACCGGCAGTTACAAGACATAGTA-TACAAATTAGTGATCAATCTAGAGGAAA aagaggtaatattatgctgaccataaatccacctttttttgtgtgtatagGTTGGACCGGCAGTTACAAGACATAGTACTACAAGTTAG-GATTGTTCTAGAGGAGAgtatgtattagttatctcatagctatgaatcccaaagttttgattctgcc Alignment from Exonerate_protein2genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaggtaatattatgctgaccataaatccacctttttttgtgtgtatagGTTGGACCGGCAGTTACAAGACATAGTACTACAAGTTAGGATTGTTCTAGAGGAGAgtatgtattagttatctcatagctatgaatcccaaagttttgattctgcc Alignment from Exonerate_coding2genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaggtaatattatgctgaccataaatccacctttttttgtgtgtatagGTTGGACCGGCAGTTACAAGACATAGTACTACAAGTTAGGATTGTTCTAGAGGAGAgtatgtattagttatctcatagctatgaatcccaaagttttgattctgcc Alignment from GeneWise -TTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaggtaatattatgctgaccataaatccacctttttttgtgtgtatagGTTGGACCGGCAGTTACAAGACATAGTACTACAAGTTAGGATTGTTCTAGAGGAGAgtatgtattagttatctcatagctatgaatcccaaagttttgattctgcc #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGC-TGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaaggcAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCCTGGGGACCCC-GCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaaggcAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCCTGGGGACCCCGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCCTGGGGACCCCGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCCTGGGGACCCCGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCCTGGGGACCCCGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCCTGGGGACCCCGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCCTGGGGACCCCGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCCTGGGGACCCCGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGC-ATGGCCCTCAAGCTT------CACCAG ggtggagaaacaaacttaccccccatgtactttcccccatccttttgaagcCTGGAGCCCTTCCTCTATGGCCTACATGCTCTGTTCAAGGGAGATTTCCGGATCACCTCCCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTATTGCACCAAGTGGTGGCACCAGGAGTCCGTCATGGCCC-AAAGCTTCATCATCATCAGgtgagcgataaataaggcagggtaggcagcaggggtgagtgccttcccct Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ggtggagaaacaaacttaccccccatgtactttcccccatccttttgaagcCTGGAGCCCTTCCTCTATGGCCTACATGCTCTGTTCAAGGGAGATTTCCGGATCACCTCCCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTATTGCACCAAGTGGTGGCACCAGGAGTCCGTCATGGCCCAAAGCTTCATCATCATCAGgtgagcgataaataaggcagggtaggcagcaggggtgagtgccttcccct Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ggtggagaaacaaacttaccccccatgtactttcccccatccttttgaagCCTGGAGCCCTTCCTCTATGGCCTACATGCTCTGTTCAAGGGAGATTTCCGGATCACCTCCCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTATTGCACCAAGTGGTGGCACCAGGAGTCCGTCATGGCCCAAAGCTTCATCATCATCAGgtgagcgataaataaggcagggtaggcagcaggggtgagtgccttcccct Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCG-CATGGCCCTCAAGCTTCACCA------G ggtggagaaacaaacttaccccccatgtactttcccccatccttttgaagCCTGGAGCCCTTCCTCTATGGCCTACATGCTCTGTTCAAGGGAGATTTCCGGATCACCTCCCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTATTGCACCAAGTGGTGGCACCAGGAGTCCGTCATGGCCC-AAAGCTTCATCATCATCAGgtgagcgataaataaggcagggtaggcagcaggggtgagtgccttcccct Alignment from Pairagon CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCG-CATGGCCCTCAAGCTTCAC----------------------------------------------------------- ggtggagaaacaaacttaccccccatgtactttcccccatccttttgaagCCTGGAGCCCTTCCTCTATGGCCTACATGCTCTGTTCAAGGGAGATTTCCGGATCACCTCCCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTATTGCACCAAGTGGTGGCACCAGGAGTCCGTCATGGCCC-AAAGCTTCATCATCATCAGGTGAGCGATAAATAAGGCAGGGTAGGCAGCAGGGGTGAGTGCCTTCCCCT Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ggtggagaaacaaacttaccccccatgtactttcccccatccttttgaagCCTGGAGCCCTTCCTCTATGGCCTACATGCTCTGTTCAAGGGAGATTTCCGGATCACCTCCCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTATTGCACCAAGTGGTGGCACCAGGAGTCCGTCATGGCCCAAAGCTTCATCATCATCAGgtgagcgataaataaggcagggtaggcagcaggggtgagtgccttcccct Alignment from Exonerate_coding2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ggtggagaaacaaacttaccccccatgtactttcccccatccttttgaagCCTGGAGCCCTTCCTCTATGGCCTACATGCTCTGTTCAAGGGAGATTTCCGGATCACCTCCCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTATTGCACCAAGTGGTGGCACCAGGAGTCCGTCATGGCCCAAAGCTTCATCATCATCAGgtgagcgataaataaggcagggtaggcagcaggggtgagtgccttcccct Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ggtggagaaacaaacttaccccccatgtactttcccccatccttttgaagCCTGGAGCCCTTCCTCTATGGCCTACATGCTCTGTTCAAGGGAGATTTCCGGATCACCTCCCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTATTGCACCAAGTGGTGGCACCAGGAGTCCGTCATGGCCCAAAGCTTCATCATCATCAGgtgagcgataaataaggcagggtaggcagcaggggtgagtgccttcccct #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCAC-CTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCACCCTCATCG-GGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCACCCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCACCCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACC-TCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCACCCTCATCG-GGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCACCCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCACCCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCACCCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCACCCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTC-AAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagacTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACGAGACCCCTCCAAGTTCT-GGAGAGGGACTACaagtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagacTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACGAGACCCCTCCAAGTTCTGGAGAGGGACTACaagtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACGAGACCCCTCCAAGTTCTGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTC-AAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACGAGACCCCTCCAAGTTCT-GGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCT-CAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACGAGACCCCTCCAAGTTCT-GGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACGAGACCCCTCCAAGTTCTGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACGAGACCCCTCCAAGTTCTGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACGAGACCCCTCCAAGTTCTGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTC-GTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggccctagctgttgtctttttgattatagtaTTCACCTTATGCTTTCCATTTCGTAT-CCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggccctagctgttgtctttttgattatagtaTTCACCTTATGCTTTCCATTTCGTATCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTCGTATCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTCGTATCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTCGTATCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTCGTATCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTCGTATCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTCGTATCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCT-TTCTTCTTTTGTGCCCGAGATGTGGCCACTg atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTCTTCTTCTTTT-TGCACGAGATGTGGCAACTggtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTCTTCTTCTTTTTGCACGAGATGTGGCAACTggtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTCTTCTTCTTTTTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCT-TTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTCTTCTTCTTTT-TGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCT-TTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTCTTCTTCTTTT-TGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTCTTCTTCTTTTTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTCTTCTTCTTTTTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTCTTCTTCTTTTTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct #### Pcnxl3_ID1185_8 --> 1 - 1 Original Alignment cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCC-AGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTg gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagcAGTCTG---AAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTGCCTTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCTGGCCCCAATGTCCATGAAGCACAGCAATT-CCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTggtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from CESAR cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTg gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagcAGTCTGAAA---GCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTGCCTTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCTGGCCCCAATGTCCATGAAGCACAGCAATTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTggtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Spaln_aa2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCTGAAA---GCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTGCCTTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCTGGCCCCAATGTCCATGAAGCACAGCAATTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Spaln_nt2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCT---GAAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTGCCTTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCTGGCCCCAATGTCCATGAAGCACAGCAATTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Pairagon CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGC-CAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCT---GAAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTGCCTTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCTGGCCCCAATGTCCATGAAGCACAGCAATTCC-ATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Exonerate_protein2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCTG---AAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTGCCTTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCTGGCCCCAATGTCCATGAAGCACAGCAATTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Exonerate_coding2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCTG---AAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTGCCTTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCTGGCCCCAATGTCCATGAAGCACAGCAATTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from GeneWise CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCTGAAA---GCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTGCCTTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCTGGCCCCAATGTCCATGAAGCACAGCAATTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGA-GAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa ccatgattggaagaagactggttagaatggaacattccttccacccacagacATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGACGAAA-GCTGAGGCTCAGCTCCAAGGAGAAACTGagtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa ccatgattggaagaagactggttagaatggaacattccttccacccacagacATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGACGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGagtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGACGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGACGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGACGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGACGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGACGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGACGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCC-CGGATGGAGGATTCTGGGCCCCTCAGAg ttgctctctcacctggttgctgatctatccaaacttttttgttttattagGAGTTGCTATCACCGGATGGAGG-TTCTGGGCCTCTCAGAggtgagttgcttcagcgcttttggcatggtggtcattgtgtggtgcagaat Alignment from CESAR GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg ttgctctctcacctggttgctgatctatccaaacttttttgttttattagGAGTTGCTATCACCGGATGGAGGTTCTGGGCCTCTCAGAggtgagttgcttcagcgcttttggcatggtggtcattgtgtggtgcagaat Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG ttgctctctcacctggttgctgatctatccaaacttttttgttttattagGAGTTGCTATCACCGGATGGAGGTTCTGGGCCTCTCAGAGgtgagttgcttcagcgcttttggcatggtggtcattgtgtggtgcagaat Alignment from Spaln_nt2Genome GAGTTGCTGCC-CCGGATGGAGGATTCTGGGCCCCTCAGAG ttgctctctcacctggttgctgatctatccaaacttttttgttttattagGAGTTGCTATCACCGGATGGAGG-TTCTGGGCCTCTCAGAGgtgagttgcttcagcgcttttggcatggtggtcattgtgtggtgcagaat Alignment from Pairagon GAGTTGCTGCC-CCGGATGGAGGATTCTGGGCCCCTCAGAG ttgctctctcacctggttgctgatctatccaaacttttttgttttattagGAGTTGCTATCACCGGATGGAGG-TTCTGGGCCTCTCAGAGgtgagttgcttcagcgcttttggcatggtggtcattgtgtggtgcagaat Alignment from Exonerate_protein2genome ttgctctctcacctggttgctgatctatccaaacttttttgttttattaggagttgctatcaccggatggaggttctgggcctctcagaggtgagttgcttcagcgcttttggcatggtggtcattgtgtggtgcagaat Alignment from Exonerate_coding2genome ttgctctctcacctggttgctgatctatccaaacttttttgttttattaggagttgctatcaccggatggaggttctgggcctctcagaggtgagttgcttcagcgcttttggcatggtggtcattgtgtggtgcagaat Alignment from GeneWise ttgctctctcacctggttgctgatctatccaaacttttttgttttattaggagttgctatcaccggatggaggttctgggcctctcagaggtgagttgcttcagcgcttttggcatggtggtcattgtgtggtgcagaat #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAAC-TCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATCTCCACCA-GGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATCTCCACCAGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATCTCCACCAGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATCTCCACCAGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAA-CTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATCTCCACCA-GGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATCTCCACCAGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAAC-TCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATCTCCACCAGGGGGAGA-AAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAGG-- tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATCTCCACCAGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGGTAgtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTCATCCGCACAG-GGCTGTGTATTCAGAGCAGGACACAGGGCTGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTCATCCGCACA-GGGCTGTGTATTCAGAGCAGGACACAGGGCTGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTCATCCGCACAGGGCTGTGTATTCAGAGCAGGACACAGGGCTGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTCATCCGCACAGGGCTGTGTATTCAGAGCAGGACACAGGGCTGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTCATCCGCACAG-GGCTGTGTATTCAGAGCAGGACACAGGGCTGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTCATCCGCACAGGGCTGTGTATTCAGAGCAGGACACAGGGCTGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTCATCCGCACAGGGCTGTGTATTCAGAGCAGGACACAGGGCTGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTCATCCGCACAGGGCTGTGTATTCAGAGCAGGACACAGGGCTGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATT-ATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccaggtGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTCATTT-CAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from CESAR gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccaggtGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTCATTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTCATTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTCATTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Pairagon GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTCATTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTCATTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Exonerate_coding2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTCATTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from GeneWise GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTCATTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGA-GCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGACGCACTGT-TGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAggtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGACGCACTGTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAggtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGACGCACTGTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGACGCACTGTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAA---------TGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGACGCACTG---------TTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGACGCACTGTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGACGCACTGTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGACGCACTGTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAG-TCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgggatggtttattttctaagacaggtcaagcctttctttttcctttcaggaCCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGCTCATTACTGG-CAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGCTATACCAACTATGTTGACAATGTTGTCTTTaagtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgggatggtttattttctaagacaggtcaagcctttctttttcctttcaggaCCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGCTCATTACTGGCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGCTATACCAACTATGTTGACAATGTTGTCTTTaagtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGCTCATTACTGGCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGCTCATTACTGGCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAG-TCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGCTCATTACTGG-CAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGCTCATTACTGGCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Exonerate_coding2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGCTCATTACTGGCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGCTCATTACTGGCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTG-GGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGCGGTATGA-AGCAGCGGGCAGTGCTGGGGCTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattggtgtcc Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGCGGTATGAAGCAGCGGGCAGTGCTGGGGCTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattgccaccg Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGCGGTATGAAGCAGCGGGCAGTGCTGGGGCTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattggtgtcc Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGCGGTATGAAGCAGCGGGCAGTGCTGGGGCTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattggtgtcc Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGCGGTATGAAGCAGCGGGCAGTGCTGGGGCTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattggtgtcc Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGCGGTATGAAGCAGCGGGCAGTGCTGGGGCTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattggtgtcc Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGCGGTATGAAGCAGCGGGCAGTGCTGGGGCTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattggtgtcc Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGCGGTATGAAGCAGCGGGCAGTGCTGGGGCTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattggtgtcc #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTG-GTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTGCCTGCACAATGCTACGTCAGTT-CCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAggtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTGCCTGCACAATGCTACGTCAGTTCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAggtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTGCCTGCACAATGCTACGTCAGTTCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTG-GTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTGCCTGCACAATGCTACGTCAG-TTCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTG-GTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTGCCTGCACAATGCTACGTCAG-TTCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTGCCTGCACAATGCTACGTCAGTTCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTGCCTGCACAATGCTACGTCAGTTCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTGCCTGCACAATGCTACGTCAGTTCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTAC-TGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagcaGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACCTGGG-AGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCAT------AGACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagcaGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACCTGGGAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACCTGGGAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCAT------AGACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACCTGGGAGGTTCTAGGGGATTGTA------TTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATA------GACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACCTGGGAGGTTCTAGGGGATTGTA------TTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATA------GACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACCTGGGAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACCTGGGAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGGTGACA-------------------------------------------- tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACCTGGGAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAGTAAGCTGGAGTGCCAGGTGTTCGGCAATTATCTCTGGTGCTTGCCTGAC #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCTCCATTCCTT-AGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagaTCAATTATTGCAGCTCCATTCCTTCAGAT-TCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagaTCAATTATTGCAGCTCCATTCCTTCAGATTCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTCAGATTCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTCAGATTCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Pairagon ATCAATTATTGCAGCTCCATTCCTT-AGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTCAGAT-TCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Exonerate_protein2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTCAGATTCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Exonerate_coding2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTCAGATTCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTCAGATTCATGACATCAAAATAGGAACA------GTAgtaaaggcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag #### Pdcd11_ID10119_13 --> 0 - 0 Original Alignment GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCC-TTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaagacctactgccgcaaggaggtcactttgacattcttctgaaagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCCTTCAGGTTGC-GAGTGACTCACAGCCAAAAGATCCGGGTGTTGAAAGCAGTCAGAAAAAAACAGAAGCCGTGCGCATTGGTCAGgtgagtacccaatgactttgactaatggtgacagcatttgagggggaagg Alignment from CESAR GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaagacctactgccgcaaggaggtcactttgacattcttctgaaagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCCTTCAGGTTGCGAGTGACTCACAGCCAAAAGATCCGGGTGTTGAAAGCAGTCAGAAAAAAACAGAAGCCGTGCGCATTGGTCAGgtgagtacccaatgactttgactaatggtgacagcatttgagggggaagg Alignment from Spaln_aa2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaagacctactgccgcaaggaggtcactttgacattcttctgaaagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCCTTCAGGTTGCGAGTGACTCACAGCCAAAAGATCCGGGTGTTGAAAGCAGTCAGAAAAAAACAGAAGCCGTGCGCATTGGTCAGgtgagtacccaatgactttgactaatggtgacagcatttgagggggaagg Alignment from Spaln_nt2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaagacctactgccgcaaggaggtcactttgacattcttctgaaagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCCTTCAGGTTGCGAGTGACTCACAGCCAAAAGATCCGGGTGTTGAAAGCAGTCAGAAAAAAACAGAAGCCGTGCGCATTGGTCAGgtgagtacccaatgactttgactaatggtgacagcatttgagggggaagg Alignment from Pairagon GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGT-CCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaagacctactgccgcaaggaggtcactttgacattcttctgaaagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCCTTCAGGTTG-CGAGTGACTCACAGCCAAAAGATCCGGGTGTTGAAAGCAGTCAGAAAAAAACAGAAGCCGTGCGCATTGGTCAGgtgagtacccaatgactttgactaatggtgacagcatttgagggggaagg Alignment from Exonerate_protein2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaagacctactgccgcaaggaggtcactttgacattcttctgaaagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCCTTCAGGTTGCGAGTGACTCACAGCCAAAAGATCCGGGTGTTGAAAGCAGTCAGAAAAAAACAGAAGCCGTGCGCATTGGTCAGgtgagtacccaatgactttgactaatggtgacagcatttgagggggaagg Alignment from Exonerate_coding2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaagacctactgccgcaaggaggtcactttgacattcttctgaaagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCCTTCAGGTTGCGAGTGACTCACAGCCAAAAGATCCGGGTGTTGAAAGCAGTCAGAAAAAAACAGAAGCCGTGCGCATTGGTCAGgtgagtacccaatgactttgactaatggtgacagcatttgagggggaagg Alignment from GeneWise GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaagacctactgccgcaaggaggtcactttgacattcttctgaaagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCCTTCAGGTTGCGAGTGACTCACAGCCAAAAGATCCGGGTGTTGAAAGCAGTCAGAAAAAAACAGAAGCCGTGCGCATTGGTCAGgtgagtacccaatgactttgactaatggtgacagcatttgagggggaagg #### Pdcd11_ID10129_23 --> 0 - 1 Original Alignment GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTC-TTATGTCTGTCACTCATAg ggccccatgtttgctaacaaatctaggataaattgttttttatttggtagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACGGTTGTTGACCCAGAAGTCCCCAGGGCTTTTCTTAT-TCTGTCACTCATTggtaatcaataatttggtttatggtcagaaagagactgtgtgggagttttt Alignment from CESAR GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg ggccccatgtttgctaacaaatctaggataaattgttttttatttggtagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACGGTTGTTGACCCAGAAGTCCCCAGGGCTTTTCTTATTCTGTCACTCATTggtaatcaataatttggtttatggtcagaaagagactgtgtgggagttttt Alignment from Spaln_aa2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctaggataaattgttttttatttggtagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACGGTTGTTGACCCAGAAGTCCCCAGGGCTTTTCTTATTCTGTCACTCATTGgtaatcaataatttggtttatggtcagaaagagactgtgtgggagttttt Alignment from Spaln_nt2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTT-CTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctaggataaattgttttttatttggtagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACGGTTGTTGACCCAGAAGTCCCCAGGGCTTTTCTTAT-TCTGTCACTCATTGgtaatcaataatttggtttatggtcagaaagagactgtgtgggagttttt Alignment from Pairagon GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctaggataaattgttttttatttggtagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACGGTTGTTGACCCAGAAGTCCCCAGGGCTTTTCTTATTCTGTCACTCATTGgtaatcaataatttggtttatggtcagaaagagactgtgtgggagttttt Alignment from Exonerate_protein2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctaggataaattgttttttatttggtagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACGGTTGTTGACCCAGAAGTCCCCAGGGCTTTTCTTATTCTGTCACTCATTGgtaatcaataatttggtttatggtcagaaagagactgtgtgggagttttt Alignment from Exonerate_coding2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctaggataaattgttttttatttggtagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACGGTTGTTGACCCAGAAGTCCCCAGGGCTTTTCTTATTCTGTCACTCATTGgtaatcaataatttggtttatggtcagaaagagactgtgtgggagttttt Alignment from GeneWise GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctaggataaattgttttttatttggtagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACGGTTGTTGACCCAGAAGTCCCCAGGGCTTTTCTTATTCTGTCACTCATTGgtaatcaataatttggtttatggtcagaaagagactgtgtgggagttttt #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAAC-AAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACCAAGAGGC-AAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACCAAGAGGCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACCAAGAGGCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Spaln_nt2Genome GAACTAGTGAAC-AAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAG------TGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACCAAGAGG-CAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACCAAGAGGCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACCAAGAGGCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Exonerate_coding2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACCAAGAGGCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACCAAGAGGCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCC-ACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTCACAGAGGTGC-TCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTCACAGAGGTGCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTCACAGAGGTGCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATC-CACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTCACAGAGGTG-CTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Pairagon GGGAAGCAGACAAAATC-CACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTCACAGAGGTG-CTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTCACAGAGGTGCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTCACAGAGGTGCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTCACAGAGGTGCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCA-CTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCATTGAAGAGGCACCTGATGGACC-TGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from CESAR AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCATTGAAGAGGCACCTGATGGACCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCATTGAAGAGGCACCTGATGGACCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCATTGAAGAGGCACCTGATGGACCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Pairagon AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCA-CTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCATTGAAGAGGCACCTGATGGA-CCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCATTGAAGAGGCACCTGATGGACCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Exonerate_coding2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCATTGAAGAGGCACCTGATGGACCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from GeneWise AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCATTGAAGAGGCACCTGATGGACCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTG-CATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcaggGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCCACCTGGCTG-CATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcaggGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCCACCTGGCTGCATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCCACCTGGCTGCATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCCACCTGGCTGCATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTG-CATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCCACCTGGCTG-CATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCCACCTGGCTGCATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCCACCTGGCTGCATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCCACCTGGCTGCATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTAT-GACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacaggTCTGTCATAGACACAATGCAACATGCAGTATATGTCTATCGACATCT-TCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACaggtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from CESAR gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacaggTCTGTCATAGACACAATGCAACATGCAGTATATGTCTATCGACATCTTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACaggtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCAACATGCAGTATATGTCTATCGACATCTTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCAACATGCAGTATATGTCTATCGACATCTTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Pairagon GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTAT-GACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCAACATGCAGTATATGTCTATCGACATCT-TCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCAACATGCAGTATATGTCTATCGACATCTTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCAACATGCAGTATATGTCTATCGACATCTTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from GeneWise GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCAACATGCAGTATATGTCTATCGACATCTTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTG-CGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCCGGCTGATAC-CTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCaagtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCCGGCTGATACCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCaagtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCCGGCTGATACCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCCGGCTGATACCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTG-CGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCCGGCTGATA-CCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCCGGCTGATACCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCCGGCTGATACCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCCGGCTGATACCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCC-ACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagtCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCCACCTTAT-CTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagtCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCCACCTTATCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCCACCTTATCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCCACCTTATCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGG-CCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCCACCTTAT-CTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCCACCTTATCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCCACCTTATCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCCACCTTATCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCA-CTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACCTTACAG-CTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACCTTACAGCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACCTTACAGCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACCTTACAGCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGC------CTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCAC------CTTACAGCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACCTTACAGCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACCTTACAGCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACCTTACAGCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCAC-CGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caactgactctactctcagccttcttgtttatgttttctgtaactcctagAATGTCACTTCTAACCACCAGAGCAA-TGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACTGGAGAAGAGgtggataaggctatattttccacagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caactgactctactctcagccttcttgtttatgttttctgtaactcctagAATGTCACTTCTAACCACCAGAGCAATGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACTGGAGAAGAGgtcaaacatcttttgttttctacagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC caactgactctactctcagccttcttgtttatgttttctgtaactcctagAATGTCACTTCTAACCACCAGAGCAATGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACTGGAGAAGAGGTGGATAAGGCTATATTTTCCACAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGA-------------------------AGGTGGATGTCTACGTCATGACACAGC caactgactctactctcagccttcttgtttatgttttctgtaactcctagAATGTCACTTCTAACCACCAGAGCAATGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACTGGAGAAGAGGTGGATAAGGCTATATTTTCCACAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGC caactgactctactctcagccttcttgtttatgttttctgtaactcctagAATGTCACTTCTAACCACCAGAGCAATGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACTGGAGAAGAGGTGGATAAGGCTATATTTTCCACAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTGGAT caactgactctactctcagccttcttgtttatgttttctgtaactcctagAATGTCACTTCTAACCACCAGAGCAATGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACTGGAGAAGAGGTGGATaaggctatattttccacaggttgatgtctatgtcatgacacagc Alignment from Exonerate_coding2genome AACGTCACTTCCAACCAC-CGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCT---TCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGA caactgactctactctcagccttcttgtttatgttttctgtaactcctagAATGTCACTTCTAACCACCAGAGCA-ATGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATG---GCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACTGGAGAAGAGgtggataaggctatattttccacaggttgatGTCTATGTCA------TGA Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caactgactctactctcagccttcttgtttatgttttctgtaactcctagAATGTCACTTCTAACCACCAGAGCAATGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACTGGAGAAGAGgtggataaggctatattttccacagGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTAC-GTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACTGGAGAAGAGgtaagtcatcttttgttttctacagGTTGATGTCTATCGTCATGA-ACAGCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACTGGAGAAGAGgtcaaacatcttttgttttctacagGTTGATGTCTATCGTCATGAACAGCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAGAAGAGGTAAGTCATCTTTTGTTTTCTACAGGTtGATGTCTATCGTCATGAACAGCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTA-CGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAGAAGAGGTAAGTCATCTTTTGTTTTCTACAGGTTGATGTCTATCGTCATGA-ACAGCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTA-CGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAGAAGAGGTAAGTCATCTTTTGTTTTCTACAGGTTGATGTCTATCGTCATGA-ACAGCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Exonerate_protein2genome CACGCTCACTGGAGAGAAGGTGGAT GTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TACACTCACTGGAGAA------GAGgtaagtcatcttttgttttctacaggttgatGTCTATCGTCATGAACAGCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Exonerate_coding2genome CACGCTCACTGGAGAGAAGGTGGAT GTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TACACTCACTGGAGAA------GAGgtaagtcatcttttgttttctacaggttgatGTCTATCGTCATGAACAGCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAGAAGAGgtaagtcatcttttgttttctacagGTTGATGTCTATCGTCATGAACAGCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTG-GTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcaggGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGCGTTTTCA-CATTGATGGTTCTTTCACTGCGAGTGTCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGaggtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcaggGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGCGTTTTCACATTGATGGTTCTTTCACTGCGAGTGTCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGaggtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcagGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGCGTTTTCACATTGATGGTTCTTTCACTGCGAGTGTCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcagGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGCGTTTTCACATTGATGGTTCTTTCACTGCGAGTGTCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcagGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGCGTTTTCACATTGATGGTTCTTTCACTGCGAGTGTCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Exonerate_protein2genome TCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGGGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG GTGAAACACCAACTTACTTTGTTAAATTTTCCCACT------CTTCTCAGGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGCGTTTTCACATTGATGGTTCTTTCACTGCGAGTGTCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Exonerate_coding2genome TCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGGGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG GTGAAACACCAACTTACTTTGTTAAATTTTCCCACT------CTTCTCAGGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGCGTTTTCACATTGATGGTTCTTTCACTGCGAGTGTCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcagGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGCGTTTTCACATTGATGGTTCTTTCACTGCGAGTGTCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta #### Pkd2l1_ID8954_14 --> 1 - 0 Original Alignment gCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAG-CTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacaggCTTACAAGGAGAGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCCTGAAGA-GCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from CESAR gCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacaggCTTACAAGGAGAGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCCTGAAGAGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Spaln_aa2Genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCCTGAAGAGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Spaln_nt2Genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCCTGAAGAGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Pairagon GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAG-CTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCCTGAAGA-GCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Exonerate_protein2genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCCTGAAGAGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Exonerate_coding2genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCCTGAAGAGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from GeneWise GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCCTGAAGAGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTAT-GTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATCGTCTTCT-CGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATCGTCTTCTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATCGTCTTCTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATCGTCTTCTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTAT-GTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATCGTCTTC-TCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATCGTCTTCTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATCGTCTTCTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATCGTCTTCTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTC-TTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTT-TGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCatgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTTGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCatgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTTGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTTGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTT-CTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTT-TGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTTGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTTGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTTGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACA-AGGGAGAAACACAAGAAGGAG---------------gt ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaaggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACACAGGGAGA-ACACAAGAAGGAAGTGTATGGGCACTGGgtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcataacattt Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaaggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACACAGGGAGAACACAAGAAGGAAgtgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcatgtcttct Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACACAGGGAGAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcataacattt Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACACAGGGAGAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcataacattt Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACACAGGGAGAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcataacattt Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACACAGGGAGAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcataacattt Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACACAGGGAGAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcataacattt Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACACAGGGAGAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcataacattt #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCC-CAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCCAGGGAA-CTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCCAGGGAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCCAGGGAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCCAGGGAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCCAGGGAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCCAGGGAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCCAGGGAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCCAGGGAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCT-GAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagaGCAAAGCAGCAC---AAGATGGCTCGAATACT-CCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagaGCAAAGCAGCAC---AAGATGGCTCGAATACTCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCAC---AAGATGGCTCGAATACTCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCT-GAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCA---CAAGATGGCTCGAATACT-CCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCT-GAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCA---CAAGATGGCTCGAATACT-CCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCAC---AAGATGGCTCGAATACTCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCAC---AAGATGGCTCGAATACTCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCAC---AAGATGGCTCGAATACTCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAAC------CAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTG-CTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCAGCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACCTTATTG-GGAGTATGAGACAAACAAACAGTTTCTGGAGCGTggtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCAGCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACCTTATTGGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTggtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCAGCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACCTTATTGGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCA------GAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGC-TCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCT---TCTTGAGCAGCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACCTTATTG-GGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTG-CTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCT---TCTTGAGCAGCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACCTTATTG-GGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Exonerate_protein2genome CCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaggcatgaagggcaagccctaccttcttgagcagctgatggactttgtgaaccaacaagagaagcagagagacCCAAGATTGTCCTCACAAGCCCGTCTACCTTATTGGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Exonerate_coding2genome catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaggcatgaagggcaagccctaccttcttgagcagctgatggactttgtgaaccaacaagagaagcagagagacccaagattgtcctcacaagcccgtctaccttattgggagtatgagacaaacaaacagtttctggagcgtggtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCAGCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACCTTATTGGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGATGAG-TTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tttgaaactggttaaccaagattctcacatacagggatttttctctttagtGAATCCATTCGCCCTGATGAACTTTCCCTTGG-AGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGatgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from CESAR tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tttgaaactggttaaccaagattctcacatacagggatttttctctttagtGAATCCATTCGCCCTGATGAACTTTCCCTTGGAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGatgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAACTTTCCCTTGGAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAACTTTCCCTTGGAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from Pairagon TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAACTTTCCCTTGGAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from Exonerate_protein2genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGATAGGTGCCAAGGGCAAGCCGTACCT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAACTTTCCCTTGGAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATGTGGGCAACTTGGAAATGGATTCCatggggtggactctgactctggtgat Alignment from Exonerate_coding2genome tttgaaactggttaaccaagattctcacatacagggatttttctctttagtgaatccattcgccctgatgaactttcccttggagtttttgagcggttcttgaataaactgtgtctgcgaccagatattgacaagatcgtgctggagatgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from GeneWise TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAACTTTCCCTTGGAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtgggcaacttggaaatggattccatggggtggactctgactctggtgat #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACA-AGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACACAGAA-AGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACACAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACACAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACACAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACACAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACACAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Exonerate_coding2genome tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcaggaggtggacacactggatatcagctcaatcagagacacacagaaaggtcgttatgctcgcctgcccaaagtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACACAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat #### Plce1_ID7626_12 --> 1 - 1 Original Alignment cATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGG-TCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAg catatttttattccgacataaaggctacaaaatttttttttaaactctagcATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGACTCTACCTCAG-GTCCACCCCTCTCTATACCAACTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGggtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from CESAR cATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTA---CCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAg catatttttattccgacataaaggctacaaaatttttttttaaactctagcATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTGAGACTCTACCTCAGGTCC------------ACCCCTCTCTATACCAACTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGggtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Spaln_aa2Genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCA catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGACTCTACCTCAGGTCCACCCCTCTCTATACCAACTGGACAATTGAGGAAAATACCAGTGATCTTCAgccagacctgggtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Spaln_nt2Genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTG-----TGAGA---CTCTACCTCAG-GTCCACCCCTCTCTATACCAACTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Pairagon CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGA-------------GTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGT----------------------GAGACTCTACCTCAGGTCCACCCCTCTCTATACCAACTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Exonerate_protein2genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGACTCTACCTCAGGTCCACCCCTCTCTATACCAACTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Exonerate_coding2genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGACTCTACCTCAGGTCCACCCCTCTCTATACCAACTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from GeneWise CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGACTCTACCTCAGGTCCACCCCTCTCTATACCAACTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTA-GTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa gtttatatgtactgataattgcccccattcttcctgtctgcccaatccaggtTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTACGTT---TTGT-TGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa gtttatatgtactgataattgcccccattcttcctgtctgcccaatccaggtTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTA---CGTTTTGTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTA---CGTTTTGTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTACGT--TTTG-TTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTA---CGTTTTGTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTA---CGTTTTGTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTA---CGTTTTGTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTC-- gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTA---CGTTTTGTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTC-AGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagcTCCTTGGGGACACCAGATAGATTCCAGCA-AGTCCTTAAGCACATACTGACACAGAGGaggtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagcTCCTTGGGGACACCAGATAGATTCCAGCAAGTCCTTAAGCACATACTGACACAGAGGaggtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Exonerate_coding2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from GeneWise CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca #### Polr2g_ID2377_6 --> 0 - 0 Original Alignment GACATTGTGATTCAGCAG---GACGATGAGATACGCTTGAAGATT-GTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGATGAG------ATACGGCTAAAGATTCGTAGGGA-ACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from CESAR GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTCGTAGGGAACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Spaln_aa2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTCGTAGGGAACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Spaln_nt2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATT-GTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTCGTAGGGA-ACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Pairagon GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATT-GTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTCGTAGGGA-ACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Exonerate_protein2genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTCGTAGGGAACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Exonerate_coding2genome ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagggcatattgattcagctggatgagatacggctaaagattcgtagggaacatgtagataaaaacgatgttgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from GeneWise GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATTTTTGCCATTGGCTCTCTGATGGACGACTACTTGGGGCTCGTGAGC ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGAT---GAGATACGGCTAAAGATTCGTAGGGAACATGTAGATAAAAACGATGTTGTACGTCTAGGTAGGCTTTTGTTC---TTTGTCTATATGACAGCAcagat #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTC-GGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCCGGTCCAA-CTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCCGGTCCAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCCGGTCCAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCCGGTCCAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Pairagon ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCCGGTCCAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Exonerate_protein2genome TATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttcctTTTAAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCCGGTCCAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Exonerate_coding2genome TATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttcctTTTAAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCCGGTCCAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tgtccctcgtgcacctggttaatgtcctctttctttttcct---TTTAAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCCGGTCCAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATC-TGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAt catccaatttacttaatatacttccttattgagactccttctgcttccaggtGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCCTGCCTAT-GCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCAtgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAt catccaatttacttaatatacttccttattgagactccttctgcttccaggtGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCCTGCCTATGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCAtgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCCTGCCTATGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCA---ACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCCTGCCTATGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCCTGCCTATGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCCTGCCTATGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCCTGCCTATGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCCTGCCTATGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACA-ATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACA-ATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCTGCCAG-CATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACA-ATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA-TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA tcatggattgtatgaagaggtgctatcccacttgggttccggtgttctagGGGAGTGATTTCTTGCCTGTGCTGTCCAGGGGATCTGATCGGGACACAGGACTTTA-CCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtgagggccactgagagtaaggcaatgtatagttgtagattttctgtcta Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA tcatggattgtatgaagaggtgctatcccacttgggttccggtgttctagGGGAGTGATTTCTTGCCTGTGCTGTCCAGGGGATCTGATCGGGACACAGGACTTTACCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtgagggccactgagagtaaggcaatgtatagttgtagattttctgtcta Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA tcatggattgtatgaagaggtgctatcccacttgggttccggtgttctagGGGAGTGATTTCTTGCCTGTGCTGTCCAGGGGATCTGATCGGGACACAGGACTTTACCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtgagggccactgagagtaaggcaatgtatagttgtagattttctgtcta Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA tcatggattgtatgaagaggtgctatcccacttgggttccggtgttctagGGGAGTGATTTCTTGCCTGTGCTGTCCAGGGGATCTGATCGGGACACAGGACTTTACCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtgagggccactgagagtaaggcaatgtatagttgtagattttctgtcta Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA tcatggattgtatgaagaggtgctatcccacttgggttccggtgttctagGGGAGTGATTTCTTGCCTGTGCTGTCCAGGGGATCTGATCGGGACACAGGACTTTACCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtgagggccactgagagtaaggcaatgtatagttgtagattttctgtcta Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA tcatggattgtatgaagaggtgctatcccacttgggttccggtgttctagGGGAGTGATTTCTTGCCTGTGCTGTCCAGGGGATCTGATCGGGACACAGGACTTTACCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtgagggccactgagagtaaggcaatgtatagttgtagattttctgtcta Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA tcatggattgtatgaagaggtgctatcccacttgggttccggtgttctagGGGAGTGATTTCTTGCCTGTGCTGTCCAGGGGATCTGATCGGGACACAGGACTTTACCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtgagggccactgagagtaaggcaatgtatagttgtagattttctgtcta Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA tcatggattgtatgaagaggtgctatcccacttgggttccggtgttctagGGGAGTGATTTCTTGCCTGTGCTGTCCAGGGGATCTGATCGGGACACAGGACTTTACCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtgagggccactgagagtaaggcaatgtatagttgtagattttctgtcta #### Ppp1r32_ID2845_6 --> 2 - 0 Original Alignment atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCG-CCCTCACAGGCCTTTCCTGGGGACCCT catggggtgaaggatggagaactgaagcgaccagtccttatttttttcagatCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCCTTCACAGA-CTTCCCTGGGAAGCCTgtaagagtgaatggttaagggtcctacttgaccattcacgatgttgagat Alignment from CESAR atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catggggtgaaggatggagaactgaagcgaccagtccttatttttttcagatCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCCTTCACAGACTTCCCTGGGAAGCCTgtaagagtgaatggttaagggtcctacttgaccattcacgatgttgagat Alignment from Spaln_aa2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catggggtgaaggatggagaactgaagcgaccagtccttatttttttcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCCTTCACAGACTTCCCTGGGAAGCCTgtaagagtgaatggttaagggtcctacttgaccattcacgatgttgagat Alignment from Spaln_nt2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCT-CACAGGCCTTTCCTGGGGACCCT catggggtgaaggatggagaactgaagcgaccagtccttatttttttcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCCTTCACA-GACTTCCCTGGGAAGCCTgtaagagtgaatggttaagggtcctacttgaccattcacgatgttgagat Alignment from Pairagon ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catggggtgaaggatggagaactgaagcgaccagtccttatttttttcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCCTTCACAGACTTCCCTGGGAAGCCTgtaagagtgaatggttaagggtcctacttgaccattcacgatgttgagat Alignment from Exonerate_protein2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catggggtgaaggatggagaactgaagcgaccagtccttatttttttcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCCTTCACAGACTTCCCTGGGAAGCCTgtaagagtgaatggttaagggtcctacttgaccattcacgatgttgagat Alignment from Exonerate_coding2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catggggtgaaggatggagaactgaagcgaccagtccttatttttttcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCCTTCACAGACTTCCCTGGGAAGCCTgtaagagtgaatggttaagggtcctacttgaccattcacgatgttgagat Alignment from GeneWise ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catggggtgaaggatggagaactgaagcgaccagtccttatttttttcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCCTTCACAGACTTCCCTGGGAAGCCTgtaagagtgaatggttaagggtcctacttgaccattcacgatgttgagat #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTT-GGGAATCGTCGGCTGAAAag ctacaaataatagggccatccttgtgcctccctattctttccctatgcagGTGACAGACCTCTTATTGGATGATTCACTGGTTTCTCTCTGTCGGGA-CCATTGGCTGAAAaggtcagggagacctctccacctcagcctctcccccatactgactggttgta Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag ctacaaataatagggccatccttgtgcctccctattctttccctatgcagGTGACAGACCTCTTATTGGATGATTCACTGGTTTCTCTCTGTCGGGACCATTGGCTGAAAaggtcagggagacctctccacctcagcctctcccccatactgactggttgta Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgtgcctccctattctttccctatgcagGTGACAGACCTCTTATTGGATGATTCACTGGTTTCTCTCTGTCGGGACCATTGGCTGAAAAGgtcagggagacctctccacctcagcctctcccccatactgactggttgta Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgtgcctccctattctttccctatgcagGTGACAGACCTCTTATTGGATGATTCACTGGTTTCTCTCTGTCGGGACCATTGGCTGAAAAGgtcagggagacctctccacctcagcctctcccccatactgactggttgta Alignment from Pairagon GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgtgcctccctattctttccctatgcagGTGACAGACCTCTTATTGGATGATTCACTGGTTTCTCTCTGTCGGGACCATTGGCTGAAAAGgtcagggagacctctccacctcagcctctcccccatactgactggttgta Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgtgcctccctattctttccctatgcagGTGACAGACCTCTTATTGGATGATTCACTGGTTTCTCTCTGTCGGGACCATTGGCTGAAAAGgtcagggagacctctccacctcagcctctcccccatactgactggttgta Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgtgcctccctattctttccctatgcagGTGACAGACCTCTTATTGGATGATTCACTGGTTTCTCTCTGTCGGGACCATTGGCTGAAAAGgtcagggagacctctccacctcagcctctcccccatactgactggttgta Alignment from GeneWise GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgtgcctccctattctttccctatgcagGTGACAGACCTCTTATTGGATGATTCACTGGTTTCTCTCTGTCGGGACCATTGGCTGAAAAGgtcagggagacctctccacctcagcctctcccccatactgactggttgta #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagtgGCACACCCAATTCGACCCCAAGCCTC-CTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaataatatcctctcttcccttgcagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagtgGCACACCCAATTCGACCCCAAGCCTCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCCAAGCCTCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaataatatcctctcttcccttgcagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCC-AAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCCAAGCCT-CCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaataatatcctctcttcccttgcagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCCAAGCCTCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaataatatcctctcttcccttgcagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCCAAGCCTCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaataatatcctctcttcccttgcagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCCAAGCCTCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaataatatcctctcttcccttgcagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCCAAGCCTCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGGTAAGGCCAATAATATCCTCTCTTCCCTTGCAGGATGCAGTCATGCTGCA #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATG-GATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGCGACTTGG-TGAGCTGGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGCGACTTGGTGAGCTGGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGCGACTTGGTGAGCTGGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGG---AATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGCGACTTGGTGAGCTGGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGT---GGGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGCGACTTGGTGAGCTGGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGCGACTTGGTGAGCTGGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGCGACTTGGTGAGCTGGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGCGACTTGGTGAGCTGGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCT-ACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCCACTGTGT-AACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCCACTGTGTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCCACTGTGTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCCACTGTGTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Pairagon CTTCAAGACAAGG-CTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCCACTGTG-TAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCCACTGTGTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Exonerate_coding2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCCACTGTGTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCCACTGTGTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCA-GACACCAACAAGATTCTCACTg aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCACGACACTA-CAAGATTCTCACTggtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from CESAR GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCACGACACTACAAGATTCTCACTggtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCACGACACTACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCACGACACTACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Pairagon GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCA-GACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCACGACACT-ACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCACGACACTACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCACGACACTACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCACGACACTACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGC-ATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCCATTGTGT-CTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCCATTGTGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCCATTGTGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCTG------CTGGGCCTATCACCAGCCATTGTGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTG---------------GCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCTGCTGGGCCTATCACCAGCCATTGTG---------------------TCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCCATTGTGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCCATTGTGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCCATTGTGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTAT-GGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttactgactttaggtttatgcagtgtcaatctcttgtgtctccagctTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATCGGGATCCGCT-TGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtcagtaatcctgaccctaatcttttggggtttagtcgcaataattagca Alignment from CESAR ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttactgactttaggtttatgcagtgtcaatctcttgtgtctccagctTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATCGGGATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtcagtaatcctgaccctaatcttttggggtttagtcgcaataattagca Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttactgactttaggtttatgcagtgtcaatctcttgtgtctccagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATCGGGATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtcagtaatcctgaccctaatcttttggggtttagtcgcaataattagca Alignment from Spaln_nt2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttactgactttaggtttatgcagtgtcaatctcttgtgtctccagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATCGGGATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtcagtaatcctgaccctaatcttttggggtttagtcgcaataattagca Alignment from Pairagon CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTAT-GGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttactgactttaggtttatgcagtgtcaatctcttgtgtctccagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATCGGGATCCGCT-TGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtcagtaatcctgaccctaatcttttggggtttagtcgcaataattagca Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGG ggtatttactgactttaggtttatgcagtgtcaatctcttgtgtctccagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATCGGGATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTCAGTAATCCTGACCCTAATcttttggggtttagtcgcaataattagca Alignment from Exonerate_coding2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGG ggtatttactgactttaggtttatgcagtgtcaatctcttgtgtctccagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATCGGGATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTCAGTAATCCTGACCCTAATcttttggggtttagtcgcaataattagca Alignment from GeneWise -------------------------------------------------GCTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG GGTATTTACTGACTTTAGGTTTATGCAGTGTCAATCTCTTGTGTCTCCAGCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATCGGGATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtcagtaatcctgaccctaatcttttggggtttagtcgcaataattagca #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTG-CTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atgtccatctgttgcagttagcactgagacatttctgttttgtatttcagtcAATGTTGGTGGCTACATTCTGGCTGTGCCTGGACC-GAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aagtccatctgttgcagttagcactgagacatttctgttttgtatttcagtcAATGTTGGTGGCTACATTCTGGCTGTGCCTGGACCGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atgtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTGTGCCTGGACCGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGC-TGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atgtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTGTGCCTGGACCG-AACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTG-CTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atgtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTGTGCCTGGACCG-AACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atgtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTGTGCCTGGACCGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atgtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTGTGCCTGGACCGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atgtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTGTGCCTGGACCGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACC-AACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCCAACCACACAG-GCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCCAACCACACAGGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCCAACCACACAGGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCCAACCACACAGGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACA-CCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCCAACCACACAG-GCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCCAACCACACAGGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCCAACCACACAGGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCCAACCACACAGGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGAC-GGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATCGGCAAAA-CATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from CESAR GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATCGGCAAAACATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATCGGCAAAACATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATCGGCAAAACATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Pairagon GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATCGGCAAAACATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATCGGCAAAACATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Exonerate_coding2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATCGGCAAAACATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from GeneWise GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATCGGCAAAACATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa #### Rasgrp2_ID1703_2 --> 2 - 2 Original Alignment atGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagatGATTCTGGAAAGGTGCAACGATT-ACAGCTAGTACGTATGTTTCTCATGATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACttgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from CESAR atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagatGATTCTGGAAAGGTGCAACGATTACAGCTAGTACGTATGTTTCTCATGATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACttgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Spaln_aa2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTACAGCTAGTACGTATGTTTCTCATGATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Spaln_nt2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTACAGCTAGTACGTATGTTTCTCATGATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Pairagon ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTACAGCTAGTACGTATGTTTCTCATGATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Exonerate_protein2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTACAGCTAGTACGTATGTTTCTCATGATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Exonerate_coding2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTACAGCTAGTACGTATGTTTCTCATGATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from GeneWise ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTACAGCTAGTACGTATGTTTCTCATGATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTC-ATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTCATCTCTCTGT-CAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTC---ATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTCATCTCTCTGTC---AACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTCATCTCTCTGTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTCATCTCTCTGTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGA-TTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTCATCTCTCTG-TCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTCATCTCTCTGTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTCATCTCTCTGTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTCATCTCTCTGTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACC-CCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGCTCACCTCCTC-ACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGCTCACCTCCTCACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGCTCACCTCCTCACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCACCC-CGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGCTCACCTCCTC-ACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Pairagon CCAACCAGCCCCACCAGCTG--------------CACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGCTCACCTCCTCA--------------CCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGCTCACCTCCTCACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGCTCACCTCCTCACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGCTCACCTCCTCACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTT-TTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGACCCCAAGGGGCTCTTTCTTGCAAGACA-TATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGaggtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGACCCCAAGGGGCTCTTTCTTGCAAGACATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGaggtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGACCCCAAGGGGCTCTTTCTTGCAAGACATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTT-TTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGTACACTATTGC---AAAGGACCCCAAGGGGCTCTTTCTTGCAAGAC-ATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTT-TTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGTACACTATTGC---AAAGGACCCCAAGGGGCTCTTTCTTGCAAGAC-ATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGACCCCAAGGGGCTCTTTCTTGCAAGACATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Exonerate_coding2genome CGTTTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaAAGTTTTCAGGGCTCTGGTACACTATTGCA---AAGGACCCCAAGGGGCTCTTTCTTGCAAGACATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGTACACTATTGCAAAG---GACCCCAAGGGGCTCTTTCTTGCAAGACATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCT-TATACAGCTTTCCTCTTCATCCGCACAg tgagggtgtggtgggtgtgatcttgtggccctgctctcctctctttccagcaTTTCAGTTCTCGTACACCGCTGTCTTCGGTGCTCTATACAG-CTTCCTCTTCATCCGCACAggtgagtcaccaccccatcatgaacaaaggcaaaagtttgatcaccatctt Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg tgagggtgtggtgggtgtgatcttgtggccctgctctcctctctttccagcaTTTCAGTTCTCGTACACCGCTGTCTTCGGTGCTCTATACAGCTTCCTCTTCATCCGCACAggtgagtcaccaccccatcatgaacaaaggcaaaagtttgatcaccatctt Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgtgatcttgtggccctgctctcctctctttccagCATTTCAGTTCTCGTACACCGCTGTCTTCGGTGCTCTATACAGCTTCCTCTTCATCCGCACAGgtgagtcaccaccccatcatgaacaaaggcaaaagtttgatcaccatctt Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgtgatcttgtggccctgctctcctctctttccagCATTTCAGTTCTCGTACACCGCTGTCTTCGGTGCTCTATACAGCTTCCTCTTCATCCGCACAGgtgagtcaccaccccatcatgaacaaaggcaaaagtttgatcaccatctt Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCT-TATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgtgatcttgtggccctgctctcctctctttccagCATTTCAGTTCTCGTACACCGCTGTCTTCGGTGCTCTATACAGC-TTCCTCTTCATCCGCACAGgtgagtcaccaccccatcatgaacaaaggcaaaagtttgatcaccatctt Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgtgatcttgtggccctgctctcctctctttccagCATTTCAGTTCTCGTACACCGCTGTCTTCGGTGCTCTATACAGCTTCCTCTTCATCCGCACAGgtgagtcaccaccccatcatgaacaaaggcaaaagtttgatcaccatctt Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgtgatcttgtggccctgctctcctctctttccagCATTTCAGTTCTCGTACACCGCTGTCTTCGGTGCTCTATACAGCTTCCTCTTCATCCGCACAGgtgagtcaccaccccatcatgaacaaaggcaaaagtttgatcaccatctt Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgtgatcttgtggccctgctctcctctctttccagCATTTCAGTTCTCGTACACCGCTGTCTTCGGTGCTCTATACAGCTTCCTCTTCATCCGCACAGgtgagtcaccaccccatcatgaacaaaggcaaaagtttgatcaccatctt #### Rce1_ID576_6 --> 2 - 1 Original Alignment CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGA-AGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtaagcctacccactcttgctattttccagccCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGCA-CTTTGTGTCTACAggtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from CESAR CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtgagcctacccactcttgctattttccagccCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGCACTTTGTGTCTACAggtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Spaln_aa2Genome CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGGTAAGCCTACCCACTCTTGCTATTTTCCAGCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGCACTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Spaln_nt2Genome CTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTCTTTTTTGG----GgttggtaagcctacccactcttgctattttccagCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGCACTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Pairagon CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtaagcctacccactcttgctattttccagCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGCACTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Exonerate_protein2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtaagcctacccactcttgctattttccagCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGCACTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Exonerate_coding2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtaagcctacccactcttgctattttccagCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGCACTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from GeneWise CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGGTAAGCCTACCCACTCTTGCTATTTTCCAGCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGCACTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCA-GCGCTGCTGCCCCTGCTGCTAACTATG tctattttgctcacaaaagcataaccaataactcttctttaaaatgaaagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCACGCACTGC-GCCACTGCTACTAACTATGgtaaaacatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from CESAR CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG tctattttgctcacaaaagcataaccaataactcttctttaaaatgaaagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCACGCACTGCGCCACTGCTACTAACTATGgtaaaacatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Spaln_aa2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG tctattttgctcacaaaagcataaccaataactcttctttaaaatgaaagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCACGCACTGCGCCACTGCTACTAACTATGgtaaaacatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG tctattttgctcacaaaagcataaccaataactcttctttaaaatgaaagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCACGCACTGCGCCACTGCTACTAACTATGgtaaaacatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Pairagon CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCA-GCGCTGCTGCCCCTGCTGCTAACTATG tctattttgctcacaaaagcataaccaataactcttctttaaaatgaaagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCACGCACTGC-GCCACTGCTACTAACTATGgtaaaacatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Exonerate_protein2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG tctattttgctcacaaaagcataaccaataactcttctttaaaatgaaagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCACGCACTGCGCCACTGCTACTAACTATGgtaaaacatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Exonerate_coding2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG tctattttgctcacaaaagcataaccaataactcttctttaaaatgaaagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCACGCACTGCGCCACTGCTACTAACTATGgtaaaacatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from GeneWise CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG tctattttgctcacaaaagcataaccaataactcttctttaaaatgaaagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCACGCACTGCGCCACTGCTACTAACTATGgtaaaacatgcttgatattttcactactctattgtaactagtgtaatgga #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCC-AGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG cttaatcacaagtacctcccagtatctaaaacaatctgactcattttcaggGACCACCCCTCTGTAATCAAGCGGCATTTTACTAGTGTTCTTATCGTATCTCAGCTTGTCCC-TCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggatgagggtgaggtactaggcagcaaagcaaggagtctattt Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG cttaatcacaagtacctcccagtatctaaaacaatctgactcattttcaggGACCACCCCTCTGTAATCAAGCGGCATTTTACTAGTGTTCTTATCGTATCTCAGCTTGTCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggatgagggtgaggtactaggcagcaaagcaaggagtctattt Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG cttaatcacaagtacctcccagtatctaaaacaatctgactcattttcagGGACCACCCCTCTGTAATCAAGCGGCATTTTACTAGTGTTCTTATCGTATCTCAGCTTGTCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggatgagggtgaggtactaggcagcaaagcaaggagtctattt Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTC-CAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG cttaatcacaagtacctcccagtatctaaaacaatctgactcattttcagGGACCACCCCTCTGTAATCAAGCGGCATTTTACTAGTGTTCTTATCGTATCTCAGCTTGT-CCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggatgagggtgaggtactaggcagcaaagcaaggagtctattt Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTC-CAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG cttaatcacaagtacctcccagtatctaaaacaatctgactcattttcagGGACCACCCCTCTGTAATCAAGCGGCATTTTACTAGTGTTCTTATCGTATCTCAGCTTGT-CCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggatgagggtgaggtactaggcagcaaagcaaggagtctattt Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG cttaatcacaagtacctcccagtatctaaaacaatctgactcattttcagGGACCACCCCTCTGTAATCAAGCGGCATTTTACTAGTGTTCTTATCGTATCTCAGCTTGTCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggatgagggtgaggtactaggcagcaaagcaaggagtctattt Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG cttaatcacaagtacctcccagtatctaaaacaatctgactcattttcagGGACCACCCCTCTGTAATCAAGCGGCATTTTACTAGTGTTCTTATCGTATCTCAGCTTGTCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggatgagggtgaggtactaggcagcaaagcaaggagtctattt Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG cttaatcacaagtacctcccagtatctaaaacaatctgactcattttcagGGACCACCCCTCTGTAATCAAGCGGCATTTTACTAGTGTTCTTATCGTATCTCAGCTTGTCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggatgagggtgaggtactaggcagcaaagcaaggagtctattt #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGAGCT-GTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagtGATGAAGTAGAAGAGGGACAGGGAGCTCGTGAGTG-GGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAG---GGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagtGATGAAGTAGAAGAGGGACAGGGAGCT---CGTGAGTGGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGAGCTCGTGAGTGGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGAGCTCGTGAGTGGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGAGCT-GTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGAGCTCGTGAGTG-GGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGAGCTCGTGAGTGGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGAGCTCGTGAGTGGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGAGCTCGTGAGTGGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCA-GAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCACGAAGTGA-CGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCACGAAGTGACGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCACGAAGTGACGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCACGAAGTGACGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCA-GAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCACGAAGTGA-CGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCACGAAGTGACGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCACGAAGTGACGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCACGAAGTGACGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagaaCCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAAC-ACCAAAGCAACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagaaCCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACACCAAAGCAACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACACCAAAGCAACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACA-CCAAAGCAACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Pairagon AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGAT-CATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACA-CCAAAGCAACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACACCAAAGCAACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Exonerate_coding2genome GAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtaGAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACACCAAAGCAACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG cacctgatggctcactgtaTCACCCCCCTTTCTGCTTTGCTTTGTA---GAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACACCAAAGCAACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc #### Rela_ID1129_6 --> 2 - 1 Original Alignment ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAAT-GCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagttCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATCGCTGTGCGCC-CTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACcgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from CESAR ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagttCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATCGCTGTGCGCCCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACcgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Spaln_aa2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATCGCTGTGCGCCCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Spaln_nt2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATCGCTGTGCGCCCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Pairagon TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAAT-GCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATCGCTGTGCGCC-CTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Exonerate_protein2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATCGCTGTGCGCCCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Exonerate_coding2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATCGCTGTGCGCCCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from GeneWise TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATCGCTGTGCGCCCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTC-TTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCCTACTGTGTG-CAGGGTCCAAAAGggtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTC---TTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCCTACTGTGTGC---AGGGTCCAAAAGggtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCCTACTGTGTGCAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCT-TGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCCTACTGTGTG-CAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTT-CTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCCTACTGTGTG-CAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCCTACTGTGTGCAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCCTACTGTGTGCAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCCTACTGTGTGCAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCT-AACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCC-CCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from CESAR ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAAT-CTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACAC-CCCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Pairagon ACCTTCCTGGTGCGGAAAT-CTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCC-CCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from GeneWise ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTG-CAGCTCATCTGTGGATACTGCCGTACCag tggggaccccaatgagctaaacagatagctgttccctgactacgttgcaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACCAAC-CATC------TATTGTCGTACCaggtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tggggaccccaatgagctaaacagatagctgttccctgactacgttgcaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACCAACCATC------TATTGTCGTACCaggtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACCAACCATC------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACCAACCATC------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Pairagon GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACCAACCATC------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACCAACCATC------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Exonerate_coding2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACCAACCATC------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from GeneWise GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACCAACCATC------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAGGCAGCCACCCACAAA-GAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggagacctttccctagactctctctctctcatacataaaggGCGATTCATCAGGCAGCCACCCACAAACGAGCTAG-GGCTATCTCCCATCTGGGCATGggtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from CESAR aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggagacctttccctagactctctctctctcatacataaaggGCGATTCATCAGGCAGCCACCCACAAACGAGCTAGGGCTATCTCCCATCTGGGCATGggtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Spaln_aa2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAACGAGCTAGGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Spaln_nt2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAACGAGCTAGGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Pairagon AGCCATTCATCAGGCAGCCACCCACAAA-GAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAACGAGCTAG-GGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Exonerate_protein2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAACGAGCTAGGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Exonerate_coding2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAACGAGCTAGGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from GeneWise AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAACGAGCTAGGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt #### Rin1_ID811_6 --> 2 - 1 Original Alignment agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGC-ATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg actaaaatcaactatgagcacccctccctcccactctttctctctcccagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGGAAGAGGAAGGCTCTTCAGGC---CCTACAACCTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCCATCCAAGAGG-CCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTggtgagtcacttcaagggtatggtttcacacaaactcccctgataggtccc Alignment from CESAR agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg actaaaatcaactatgagcacccctccctcccactctttctctctcccagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGGAAGAGGAAGGCTCTTCAGGC---CCTACAACCTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCCATCCAAGAGGCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTggtgagtcacttcaagggtatggtttcacacaaactcccctgactctttgt Alignment from Spaln_aa2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGGAAGAGGAAGGCTCTTCAGGC---CCTACAACCTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCCATCCAAGAGGCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgataggtccc Alignment from Spaln_nt2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGGAAGAGGAAGGCTCTTCAG---GCCCTACAACCTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCCATCCAAGAGGCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgataggtccc Alignment from Pairagon AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGG-CATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGGAAGAGGAAGGCTCTTCAG---GCCCTACAACCTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCCATCCAAGAGG-CCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgataggtccc Alignment from Exonerate_protein2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGGAAGAGGAAGGCTCTTCAGGC---CCTACAACCTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCCATCCAAGAGGCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgataggtccc Alignment from Exonerate_coding2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGGAAGAGGAAGGCTCTTCAGGC---CCTACAACCTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCCATCCAAGAGGCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgataggtccc Alignment from GeneWise AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGGAAGAGGAAGGCTCTTCAGGC---CCTACAACCTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCCATCCAAGAGGCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgataggtccc #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACC-GGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTCGGAAGCT-CAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTCGGAAGCTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTCGGAAGCTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Spaln_nt2Genome CGCTGGAGCGGGA CTTCGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ATTTTGCATGAGGgtgtctaatgtacaaaactgtggtcttgtcaccccag----GACCGCCTTATCGGGGCCACTCGGAAGCTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTCGGAAGCTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Exonerate_protein2genome attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccaggaccgccttatcggggccactcggaagctcagccatttcaccttgtggggtctagaaacagtcccaggtccagatgccaaagtgcatagggccctaggatggcccaccctagcagcagcagtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Exonerate_coding2genome attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccaggaccgccttatcggggccactcggaagctcagccatttcaccttgtggggtctagaaacagtcccaggtccagatgccaaagtgcatagggccctaggatggcccaccctagcagcagcagtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCC------CAGGTCCCTGAGGAC attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTCGGAAGCTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAGTGAGCAGACTGAGGAGCTTTACCTCTGATggctgacaattcctctatcc #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCT-CGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCCAGCAGC-AAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCCAGCAGCAAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCCAGCAGCAAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCG-GCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCT---TCCTCCAGCAG-CAAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGC--CCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCT---TCCTC--CAGCAGCAAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTTCCTCCA---GCAGCAAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTTCCTCCA---GCAGCAAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTTCCTCCAGCAGCA---AACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac #### Rpp30_ID7088_8 --> 0 - 0 Original Alignment AATGTAATTCTG-TCCAGTGCTGCAGAAAGG agtatgctattgatcattgattttccctattctaattattcttcccctagAATGTAATTCTGCTCAA-TACTGCAGAGAGAgtatacatagggcaactctactggctgtggttaggttgcttgacataggg Alignment from CESAR AATGTAATTCTGTCCAGTGCTGCAGAAAGG agtatgctattgatcattgattttccctattctaattattcttcccctagAATGTAATTCTGCTCAATACTGCAGAGAGAgtatacatagggcaactctactggctgtggttaggttgcttgacataggg Alignment from Spaln_aa2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG agtatgctattgatcattgattttccctattctaattattcttcccctagAATGTAATTCTGCTCAATACTGCAGAGAGAgtatacatagggcaactctactggctgtggttaggttgcttgacataggg Alignment from Spaln_nt2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG agtatgctattgatcattgattttccctattctaattattcttcccctagAATGTAATTCTGCTCAATACTGCAGAGAGAgtatacatagggcaactctactggctgtggttaggttgcttgacataggg Alignment from Pairagon AATGTAATTCTGTCCAGTGCTGCAGAAAGG agtatgctattgatcattgattttccctattctaattattcttcccctagAATGTAATTCTGCTCAATACTGCAGAGAGAgtatacatagggcaactctactggctgtggttaggttgcttgacataggg Alignment from Exonerate_protein2genome agtatgctattgatcattgattttccctattctaattattcttcccctagaatgtaattctgctcaatactgcagagagagtatacatagggcaactctactggctgtggttaggttgcttgacataggg Alignment from Exonerate_coding2genome agtatgctattgatcattgattttccctattctaattattcttcccctagaatgtaattctgctcaatactgcagagagagtatacatagggcaactctactggctgtggttaggttgcttgacataggg Alignment from GeneWise agtatgctattgatcattgattttccctattctaattattcttcccctagaatgtaattctgctcaatactgcagagagagtatacatagggcaactctactggctgtggttaggttgcttgacataggg #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGT-TCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCCTCTC-ACGATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCCTCTCACGATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCCTCTCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCCTCTCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCCTCTCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCCTCTCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCCTCTCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCCTCTCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGC-CAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCCAGT-TGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCCAGTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCCAGTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCCAGTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCCAGTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCCAGTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCCAGTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCCAGTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATC-ACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagcTTCTACCTGGCAGAGATCCACACTGGCAC-AGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGggtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagcTTCTACCTGGCAGAGATCCACACTGGCACAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGggtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCCACACTGGCACAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCCACACTGGCACAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Pairagon CTTCTACCTGGCAGAGAT-CACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCCACACTGGCAC-AGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCCACACTGGCACAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCCACACTGGCACAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCCACACTGGCACAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTT-GAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacaggACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATTGGGCCCCACTGCTTTCGAGTTACTTA-TGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacaggACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATTGGGCCCCACTGCTTTCGAGTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATTGGGCCCCACTGCTTTCGAGTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTT-GAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATTGGGCCCCACTGCTTTCGAGTTACTTA-TGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTT-GAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATTGGGCCCCACTGCTTTCGAGTTACTTA-TGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATTGGGCCCCACTGCTTTCGAGTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATTGGGCCCCACTGCTTTCGAGTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATTGGGCCCCACTGCTTTCGAGTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAG-CTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagaTTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAAGCTGCTAGTAGTAAACTTAT-CTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from CESAR aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagaTTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAAGCTGCTAGTAGTAAACTTATCTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Spaln_aa2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAAGCTGCTAGTAGTAAACTTATCTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Spaln_nt2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAAGCTGCTAGTAGTAAACTTATCTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Pairagon ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAAGCTGCTAGTAGTAAACTTATCTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Exonerate_protein2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAAGCTGCTAGTAGTAAACTTATCTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Exonerate_coding2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAAGCTGCTAGTAGTAAACTTATCTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAAGCTGCTAGTAGTAAACTTATCTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGAT-CCTGCCAGCTCTGATTTCACCag gtgcctgaggtcatggtcacttcatttactcatgagccacctgttcttagCTGGTGAATAGCTTCCTAGACAAGGCAACTGAAAAGGTTCTTGACCCCCGCCA-TTCAGATTTCACTaggtgagtctgctgagtttccgatgtgtcatcatgtgcgatgcagggtacct Alignment from CESAR TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgaggtcatggtcacttcatttactcatgagccacctgttcttagCTGGTGAATAGCTTCCTAGACAAGGCAACTGAAAAGGTTCTTGACCCCCGCCATTCAGATTTCACTaggtgagtctgctgagtttccgatgtgtcatcatgtgcgatgcagggtacct Alignment from Spaln_aa2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgaggtcatggtcacttcatttactcatgagccacctgttcttagCTGGTGAATAGCTTCCTAGACAAGGCAACTGAAAAGGTTCTTGACCCCCGCCATTCAGATTTCACTAGgtgagtctgctgagtttccgatgtgtcatcatgtgcgatgcagggtacct Alignment from Spaln_nt2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgaggtcatggtcacttcatttactcatgagccacctgttcttagCTGGTGAATAGCTTCCTAGACAAGGCAACTGAAAAGGTTCTTGACCCCCGCCATTCAGATTTCACTAGgtgagtctgctgagtttccgatgtgtcatcatgtgcgatgcagggtacct Alignment from Pairagon TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgaggtcatggtcacttcatttactcatgagccacctgttcttagCTGGTGAATAGCTTCCTAGACAAGGCAACTGAAAAGGTTCTTGACCCCCGCCATTCAGATTTCACTAGgtgagtctgctgagtttccgatgtgtcatcatgtgcgatgcagggtacct Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgaggtcatggtcacttcatttactcatgagccacctgttcttagCTGGTGAATAGCTTCCTAGACAAGGCAACTGAAAAGGTTCTTGACCCCCGCCATTCAGATTTCACTAGgtgagtctgctgagtttccgatgtgtcatcatgtgcgatgcagggtacct Alignment from Exonerate_coding2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgaggtcatggtcacttcatttactcatgagccacctgttcttagCTGGTGAATAGCTTCCTAGACAAGGCAACTGAAAAGGTTCTTGACCCCCGCCATTCAGATTTCACTAGgtgagtctgctgagtttccgatgtgtcatcatgtgcgatgcagggtacct Alignment from GeneWise TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgaggtcatggtcacttcatttactcatgagccacctgttcttagCTGGTGAATAGCTTCCTAGACAAGGCAACTGAAAAGGTTCTTGACCCCCGCCATTCAGATTTCACTAGgtgagtctgctgagtttccgatgtgtcatcatgtgcgatgcagggtacct #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAG-AAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGCAAGC-GGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGCAAGCGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGCAAGCGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGCAAGCGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGCAAGCGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGCAAGCGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGCAAGCGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGCAAGCGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCT-GATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTCGATG-TAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTCGATGTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTCGATGTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTCGATGTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Pairagon GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCT-GATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTCGATG-TAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTCGATGTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Exonerate_coding2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTCGATGTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTCGATGTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGG-AGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGCAGCA-AGTCAACCTGGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGCAGCAAGTCAACCTGGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGCAGCAAGTCAACCTGGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGCAGCAAGTCAACCTGGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGCAGCAAGTCAACCTGGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGCAGCAAGTCAACCTGGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_coding2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGCAGCAAGTCAACCTGGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGCAGCAAGTCAACCTGGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGAT-GAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggggtaattcaaaagacataatttacacactgacaactatgtccccacaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATCGAGGAGA-GGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggggtaattcaaaagacataatttacacactgacaactatgtccccacaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATCGAGGAGAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATCGAGGAGAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAGGA------GGAGACGCTTGAGGATCGAGGAGAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGAT-GAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATCGAGGAG-AGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATCGAGGAGAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATCGAGGAGAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAA--------------------------------------------------- ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAG------GAGGAGACGCTTGAGGATCGAGGAGAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGGTGAGCGGTTGAGTAATAGGGGCCAGGGTAAATCTGCAGGCAAGGGCACT #### Sart1_ID966_9 --> 0 - 0 Original Alignment ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTG-AGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaaacctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGCAGGGAAC-AGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from CESAR ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagactggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGCAGGGAACAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Spaln_aa2Genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaaacctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGCAGGGAACAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Spaln_nt2Genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaaacctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGCAGGGAACAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Pairagon ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaaacctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGCAGGGAACAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Exonerate_protein2genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaaacctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGCAGGGAACAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Exonerate_coding2genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaaacctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGCAGGGAACAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from GeneWise ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaaacctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGCAGGGAACAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATC-GATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATGCTATTCGATT-TTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAggtaagtggtatctgggatgcttaggctagaatacgattgggtccctatgc Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATGCTATTCGATTTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAggtaagtggtatctgggatgcttaggctagaatacgattgtcactctgact Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATGCTATTCGATTTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgggtccctatgc Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATGCTATTCGATTTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgggtccctatgc Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATGCTATTCGATTTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgggtccctatgc Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATGCTATTCGATTTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgggtccctatgc Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATGCTATTCGATTTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgggtccctatgc Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATGCTATTCGATTTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgggtccctatgc #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAG-GAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAACGAGTCGC-TGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAACGAGTCGCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAACGAGTCGCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAACGAGTCGCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGA----AGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAACGAGTCGCTG----CAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAACGAGTCGCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAACGAGTCGCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAACGAGTCGCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCT-CCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgttaaggctgctaatgcctagaaagcctgagctgtctgtccacaggaCCCCAAGACTCATGGAAAGTCTCTCCCTG-CTCCCAGGGAAACCTTCAAAGGAAAAAAgtaagagcaccattccctaaccattaacccatttcatatttcagcccccc Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgttaaggctgctaatgcctagaaagcctgagctgtctgtccacaggaCCCCAAGACTCATGGAAAGTCTCTCCCTGCTCCCAGGGAAACCTTCAAAGGAAAAAAgtaagagcaccattccctaaccattaacccatttcatatttcagcccccc Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgttaaggctgctaatgcctagaaagcctgagctgtctgtccacagGACCCCAAGACTCATGGAAAGTCTCTCCCTGCTCCCAGGGAAACCTTCAAAGGAAAAAAgtaagagcaccattccctaaccattaacccatttcatatttcagcccccc Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgttaaggctgctaatgcctagaaagcctgagctgtctgtccacagGACCCCAAGACTCATGGAAAGTCTCTCCCTGCTCCCAGGGAAACCTTCAAAGGAAAAAAgtaagagcaccattccctaaccattaacccatttcatatttcagcccccc Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgttaaggctgctaatgcctagaaagcctgagctgtctgtccacagGACCCCAAGACTCATGGAAAGTCTCTCCCTGCTCCCAGGGAAACCTTCAAAGGAAAAAAgtaagagcaccattccctaaccattaacccatttcatatttcagcccccc Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgttaaggctgctaatgcctagaaagcctgagctgtctgtccacagGACCCCAAGACTCATGGAAAGTCTCTCCCTGCTCCCAGGGAAACCTTCAAAGGAAAAAAgtaagagcaccattccctaaccattaacccatttcatatttcagcccccc Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgttaaggctgctaatgcctagaaagcctgagctgtctgtccacagGACCCCAAGACTCATGGAAAGTCTCTCCCTGCTCCCAGGGAAACCTTCAAAGGAAAAAAgtaagagcaccattccctaaccattaacccatttcatatttcagcccccc Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgttaaggctgctaatgcctagaaagcctgagctgtctgtccacagGACCCCAAGACTCATGGAAAGTCTCTCCCTGCTCCCAGGGAAACCTTCAAAGGAAAAAAgtaagagcaccattccctaaccattaacccatttcatatttcagcccccc #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGA-GAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGACGAGACACTGG-CTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGACGAGACACTGGCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGACGAGACACTGGCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGA-GAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACT---GAACTGGAGACGAGACACTGG-CTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGA-GAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACT---GAACTGGAGACGAGACACTGG-CTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGACGAGACACTGGCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGACGAGACACTGGCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGACGAGACACTGGCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa #### Sec31b_ID9038_14 --> 2 - 0 Original Alignment acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAA-CTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagatACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACCTGCAAT-TGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from CESAR acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagatACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACCTGCAATTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Spaln_aa2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACCTGCAATTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Spaln_nt2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACCTGCAATTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Pairagon ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTC------TGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAAC------CTGCAATTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Exonerate_protein2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACCTGCAATTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Exonerate_coding2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACCTGCAATTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from GeneWise ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACCTGCAATTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGC-TGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCCTGGTGCT-TGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCCTGGTGCTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCCTGGTGCTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCCTGGTGCTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAG-CTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCCTGGTGC-TTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCCTGGTGCTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCCTGGTGCTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCCTGGTGCTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag #### Sec31b_ID9047_5 --> 0 - 0 Original Alignment AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAAC-CTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCCTCCAAGTCC-GCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from CESAR AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCCTCCAAGTCCGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Spaln_aa2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCCTCCAAGTCCGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Spaln_nt2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCCTCCAAGTCCGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Pairagon AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAA-CCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCCTCCAAGTCC-GCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Exonerate_protein2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCCTCCAAGTCCGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Exonerate_coding2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCCTCCAAGTCCGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from GeneWise AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCCTCCAAGTCCGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGC-CGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCC-CCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCCCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCCCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCCCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCG-CCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCC-CCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCCCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCCCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCCCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGG-GTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACATTACGGGGACGTCTGCA-TCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACATTACGGGGACGTCTGCATCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACATTACGGGGACGTCTGCATCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACATTACGGGGACGTCTGCATCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGG-GTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACATTACGGGGACGTCTGCA-TCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACATTACGGGGACGTCTGCATCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACATTACGGGGACGTCTGCATCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACATTACGGGGACGTCTGCATCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCC-GTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagcaGATGGCTGGATCCACAAAGCTCGTAGTCC-GGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagcaGATGGCTGGATCCACAAAGCTCGTAGTCCGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTCGTAGTCCGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTCGTAGTCCGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Pairagon CTGATGGCTGGATCCACAAGGC-CGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTCGTAGTCC-GGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTCGTAGTCCGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTCGTAGTCCGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTCGTAGTCCGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCC-TGCATGGTGGCCACCACCGTAGCCAACag tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGCTGCATGGTGG-CACCACTGTAGCGAACaggtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCC-TGCATGGTGGCCACCACCGTAGCCAACag tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGCTGCATGGTGG-CACCACTGTAGCGAACaggtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGCTGCATGGTGGCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGC-CTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTAGTGGA---ATTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGCTGCATGGTGG-CACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGC-CTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTAGTGGAA---TTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGCTGCATGGTGG-CACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGCTGCATGGTGGCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGCTGCATGGTGGCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGCTGCATGGTGGCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATAT-CCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag taaaaagaacatggataatggatagatggttataattatttctttctcagaCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCCAGAAA-TAATTTTGTGGGCCTTCTAATTGGTCCCaggtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag taaaaagaacatggataatggatagatggttataattatttctttctcagaCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCCAGAAATAATTTTGTGGGCCTTCTAATTGGTCCCaggtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCCAGAAATAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCCAGAAATAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCCAGAAATAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCCAGAAATAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCCAGAAATAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCCAGAAATAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAAC-CAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCCAAGGCCCAC-CCCATCTGGGCACCATGGCCCTCCTCCAATGggtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCCAAGGCCCACCCCATCTGGGCACCATGGCCCTCCTCCAATGggtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCCAAGGCCCACCCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCCAAGGCCCACCCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCCAAGGCCCACCCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCCAAGGCCCACCCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCCAAGGCCCACCCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCCAAGGCCCACCCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGTACGCCTGTG-GGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagatCAGTATCTGGGAAGTACACCAGTGCGCCTCTGGGG-TTATCGCCTGCATCAAGGAAAAggtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from CESAR atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagatCAGTATCTGGGAAGTACACCAGTGCGCCTCTGGGGTTATCGCCTGCATCAAGGAAAAggtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGCGCCTCTGGGGTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGCGCCTCTGGGGTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCTGTG-GGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGCGCCTCTGGGGT-TATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGCGCCTCTGGGGTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGCGCCTCTGGGGTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGCGCCTCTGGGGTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAA-GAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGCGAGGAGG-AGAGGAGGACAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGCGAGGAGGAGAGGAGGACAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGCGAGGAGGAGAGGAGGACAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGCGAGGAGGAGAGGAGGACAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAA-GAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGCGAGGAGGA-GAGGAGGACAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGCGAGGAGGAGAGGAGGACAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGCGAGGAGGAGAGGAGGACAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGCGAGGAGGAGAGGAGGACAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTTGAG-ACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTGAGCACACGGC-GAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from CESAR GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTGAGCACACGGCGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Spaln_aa2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTGAGCACACGGCGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Spaln_nt2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTGAGCACACGGCGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Pairagon GGGAAGGAGTTTGAG-ACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTGAGCACACGGC-GAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTGAGCACACGGCGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTGAGCACACGGCGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTGAGCACACGGCGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCGAATGAATCGACTTTACTG-GGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCGAATGAATCGACTTTACTGGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCGAATGAATCGACTTTACTGGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCGAATGAATCGACTTTACTG-GGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCG-TTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCGAATGAATCGACTTTACTG-GGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCGAATGAATCGACTTTACTGGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCGAATGAATCGACTTTACTGGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCGAATGAATCGACTTTACTGGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTG-TCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagagAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGCTCCA-ATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagagAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGCTCCAATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aagtttttacagttagaaaaggtcagtcacagatgtgcctcttgca gAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGCTCCAATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGCTCCAATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Pairagon AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGCTCCAATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGCTCCAATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGCTCCAATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from GeneWise -----------CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagATGTGCCTCTTGCAGAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGCTCCAATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTGGGC-ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACAC-AGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGagtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from CESAR AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGagtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG---GCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Pairagon AGAGCTGCGGCTGTGG-GCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCC---CTGGCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACAC-AGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Exonerate_coding2genome AGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGAGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA CCTGGACAGCTGAAGCATGATCCCTGGTTGCCACCACCTCCGTGTTCCAGAGAGCAGCAACTGTGGCCCATCACACAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from GeneWise AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat #### Sfxn2_ID9971_9 --> 0 - 2 Original Alignment AAGGTCAAAGTGATGCACGCC-CCCCTGCAGGTCTTGCTGTGTGGCTGCtt ctggctctctgctcctggcttcatggcagactcggctgcatgtcttgcagAAAGTCAAAGTGATGCATGCCCCCCC-GCAAGTG---CTTTGTGGTTGTtcgtaaactgatctcccaatgcagtgagctcttcagtatcaaaccagtggtc Alignment from CESAR AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCtt ctggctctctgctcctggcttcatggcagactcggctgcatgtcttgcagAAAGTCAAAGTGATGCATGCCCCCCCGCAAGTG---CTTTGTGGTTGTtcgtaaactgatctcccaatgcagtgagctcttcagtatcaaaccagtggtc Alignment from Spaln_aa2Genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ctggctctctgctcctggcttcatggcagactcggctgcatgtcttgcagAAAGTCAAAGTGATGCATGCCCCCCCGCAAGTG---CTTTGTGGTTGTTCgtaaactgatctcccaatgcagtgagctcttcagtatcaaaccagtggtc Alignment from Spaln_nt2Genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ctggctctctgctcctggcttcatggcagactcggctgcatgtcttgcagAAAGTCAAAGTGATGCATGCCCCCCCGCAAG---TGCTTTGTGGTTGTTCgtaaactgatctcccaatgcagtgagctcttcagtatcaaaccagtggtc Alignment from Pairagon AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ctggctctctgctcctggcttcatggcagactcggctgcatgtcttgcagAAAGTCAAAGTGATGCATGCCCCCCCGCAAG---TGCTTTGTGGTTGTTCgtaaactgatctcccaatgcagtgagctcttcagtatcaaaccagtggtc Alignment from Exonerate_protein2genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ctggctctctgctcctggcttcatggcagactcggctgcatgtcttgcagAAAGTCAAAGTGATGCATGCCCCCCCGCAAGTG---CTTTGTGGTTGTTCgtaaactgatctcccaatgcagtgagctcttcagtatcaaaccagtggtc Alignment from Exonerate_coding2genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTTCCTCCTCTTTATGGTGCCAGT ctggctctctgctcctggcttcatggcagactcggctgcatgtcttgcagAAAGTCAAAGTGATGCATGCCCCCCCGCAAGTG---CTTTGTGGTTGTTCGTAAACTGATCTCCCAATGCAgtgagctcttcagtatcaaaccagtggtc Alignment from GeneWise AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ctggctctctgctcctggcttcatggcagactcggctgcatgtcttgcagAAAGTCAAAGTGATGCATGCCCCCCCGCAAGTGCTT---TGTGGTTGTTCgtaaactgatctcccaatgcagtgagctcttcagtatcaaaccagtggtc #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTG-GTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ggatcagtggactgggtttgggggtatagacccatctcctatccctccagaAAGACTCCCACTGTGCGTGTTTT-GCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCaggtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from CESAR gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ggatcagtggactgggtttgggggtatagacccatctcctatccctccagaAAGACTCCCACTGTGCGTGTTTTGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCaggtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGCGTGTTTTGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGCGTGTTTTGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Pairagon GAAGACTCCGACTGTG-GTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGCGTGTTTT-GCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGCGTGTTTTGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Exonerate_coding2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGCGTGTTTTGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGCGTGTTTTGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTGTCAGAA-AAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctaattttctgttgtgtgtggcatcctacctgactgggtctccctgcaggCCA---CCTGGGAGCCTATCAGAACAAGATCT-TCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtaggttgtctacctgggaagggtatacagggctgccatggaacatggga Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctaattttctgttgtgtgtggcatcctacctgactgggtctccctgcaggCCA---CCTGGGAGCCTATCAGAACAAGATCTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtaggttgtctacctgggaagggtatacagggctgccatggaacatggga Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctaattttctgttgtgtgtggcatcctacctgactgggtctccctgcagGCCA---CCTGGGAGCCTATCAGAACAAGATCTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtaggttgtctacctgggaagggtatacagggctgccatggaacatggga Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctaattttctgttgtgtgtggcatcctacctgactgggtctccctgcagGCC---ACCTGGGAGCCTATCAGAACAAGATCTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtaggttgtctacctgggaagggtatacagggctgccatggaacatggga Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctaattttctgttgtgtgtggcatcctacctgactgggtctccctgcagGCC---ACCTGGGAGCCTATCAGAACAAGATCTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtaggttgtctacctgggaagggtatacagggctgccatggaacatggga Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctaattttctgttgtgtgtggcatcctacctgactgggtctccctgcagGCCA---CCTGGGAGCCTATCAGAACAAGATCTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtaggttgtctacctgggaagggtatacagggctgccatggaacatggga Alignment from Exonerate_coding2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctaattttctgttgtgtgtggcatcctacctgactgggtctccctgcagGCCA---CCTGGGAGCCTATCAGAACAAGATCTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtaggttgtctacctgggaagggtatacagggctgccatggaacatggga Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctaattttctgttgtgtgtggcatcctacctgactgggtctccctgcagGCCA---CCTGGGAGCCTATCAGAACAAGATCTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtaggttgtctacctgggaagggtatacagggctgccatggaacatggga #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAG-TCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg agggttgacacagttaccatccaccttttgatttcccttttccctgacagttATGCCAGAAGCTGCTACTGAGACCTTGGAT---GAATGGCAGCTCCATCT-AGAAATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCTCGGGAAggtaaggctgccagttggatattagctccctcatacccttttttatttatt Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg agggttgacacagttaccatccaccttttgatttcccttttccctgacagttATGCCAGAAGCTGCTACTGAGACCTTG---GATGAATGGCAGCTCCATCTAGAAATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCTCGGGAAggtaaggctgccagttggatattagctccctcactctcttcttccttctgc Alignment from Spaln_aa2Genome -------GAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagttatgccagaagctgctactgagaccttggatgaatggcagCTCCATCTAGAAATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcatacccttttttatttatt Alignment from Spaln_nt2Genome ATCGCCTCCACTTG--CAACACAATTCTGGAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagttatgccagaagctgctactgagaccttggatgaatggcagctccatctagAAATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcatacccttttttatttatt Alignment from Pairagon AGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagttatgccagaagctgctactgagaccttggatgaatggcagctccatctagAAATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcatacccttttttatttatt Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagTTATGCCAGAAGCTGCTACTGAGACCTTG---GATGAATGGCAGCTCCATCTAGAAATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcatacccttttttatttatt Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagTTATGCCAGAAGCTGCTACTGAGACCTTG---GATGAATGGCAGCTCCATCTAGAAATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcatacccttttttatttatt Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAG--------------------------------------------------- agggttgacacagttaccatccaccttttgatttcccttttccctgacagTTATGCCAGAAGCTGCTACTGAGACCTTG---GATGAATGGCAGCTCCATCTAGAAATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCTCGGGAAGGTAAGGCTGCCAGTTGGATATTAGCTCCCTCATACCCTTTTTTATTTATT #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATC-CGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCCTGCT-TCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACaggcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCCTGCTTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACaggcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCCTGCTTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCCTGCTTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCCTGCTTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCCTGCTTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCCTGCTTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAGGGTGGCAGTGAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCCTGCTTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGGCAAGTACTTGGgtgaacttgtgtcatagggtggggtcaactatcatcat #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTCCAAGGTCTCCAC-CTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCCTCC-TATCCCAAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from CESAR ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCCTCCTATCCCAAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCCTCCTATCCCAAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCCTCCTATCCCAAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Pairagon ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCCTCCTATCCCAAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCCTCCTATCCCAAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Exonerate_coding2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCCTCCTATCCCAAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from GeneWise ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCCTCCTATCCCAAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTG-CTCCAGCCATCCCGAGTGCAGCCAGAA gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagctATTCAGCTCTTTGTACATTCAA---TCCTGCGTACTACCAGATgtaatgagctgggagttacaacatggttaagtttttcttgtaaattatgt Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagctATTCAGCTCTTTGTACAT--TCAATCCTGCGTACTACCAGATgtaatgagctgggagttacaacatggttaagtttttctgctaattgtctc Alignment from Spaln_aa2Genome GCCAG AA GCCAGgtatgggatgcttgtgttatatctcttccctccccacatccccagctattcagctctttgtacattcaatcctgcgtactaccagATgtaatgagctgggagttacaacatggttaagtttttcttgtaaattatgt Alignment from Spaln_nt2Genome GCCAG AA GCCAGgtatgggatgcttgtgttatatctcttccctccccacatccccagctattcagctctttgtacattcaatcctgcgtactaccagATgtaatgagctgggagttacaacatggttaagtttttcttgtaaattatgt Alignment from Pairagon CTATTCAGCTCTTT gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagCTATTCAGCTCTTTgtacattcaatcctgcgtactaccagatgtaatgagctgggagttacaacatggttaagtttttcttgtaaattatgt Alignment from Exonerate_protein2genome GCAGCCAGAA GCCAGGTATGggatgcttgtgttatatctcttccctccccacatccccagctattcagctctttgtacattcaatcctgcgtactaccagatgtaatgagctgggagttacaacatggttaagtttttcttgtaaattatgt Alignment from Exonerate_coding2genome gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagctattcagctctttgtacattcaatcctgcgtactaccagatgtaatgagctgggagttacaacatggttaagtttttcttgtaaattatgt Alignment from GeneWise -------ATTCAGCTCTTT gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagctattcagctctttgtacattcaatcctgcgtactaccagatgtaatgagctgggagttacaacatggttaagTTTTTCTTGTAAATTATGT #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGGACA-CCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCCTC-CACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAggtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from CESAR AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCCTCCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAggtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Spaln_aa2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCCTCCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Spaln_nt2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCCTCCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Pairagon AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCCTCCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Exonerate_protein2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCCTCCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Exonerate_coding2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCCTCCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagTTACAACATGGTTAAGTTTTTCTGCTAATTGTCTCTCCTTTCAGAGTCAGAAGGGGACACCCTCCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTG-TCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctccccctttgaattctcatcatcacaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGCTCTGTCACAG-TGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCtgtacagcccactcctagtgcgacgttgtaaaggctactgcaatagatttt Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctccccctttgaattctcatcatcacaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGCTCTGTCACAGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCtgtacagcccactcctagtgcgacgttgtaaaggctactgcaagtgttcct Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGCTCTGTCACAGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaatagatttt Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGCTCTGTCACAGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaatagatttt Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTG-TCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGCTCTGTCACAGT-GCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaatagatttt Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGCTCTGTCACAGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaatagatttt Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGCTCTGTCACAGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaatagatttt Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGCTCTGTCACAGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaatagatttt #### Slc22a20_ID1344_9 --> 1 - 2 Original Alignment gCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACT-ATTGCTGCAATGGAGAGAcg gagcatttttggaccaggcccatctcctctgactgacaatgcctttccaggCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---CTTGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTCATTG-TGCAATGGAGAGAcggtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from CESAR gCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcg gagcatttttggaccaggcccatctcctctgactgacaatgcctttccaggCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---CTTGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTCATTGTGCAATGGAGAGAcggtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Spaln_aa2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---CTTGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTCATTGTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Spaln_nt2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGC---TCTTGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTCATTGTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Pairagon GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGC---TCTTGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTCATTGTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Exonerate_protein2genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---CTTGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTCATTGTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Exonerate_coding2genome gagcatttttggaccaggcccatctcctctgactgacaatgcctttccaggcaaatgggtatggagtttgcttctgtcaatgctcttggaggtttggtggccccactgatcacatcactaggagagatcagcccagtcctgccaccagtatcctttggtgccacatctgttctggctggcatggctgtggcttgcttcctgactgagacccgtaatgtgccactggtagaaactcattgtgcaatggagagacggtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from GeneWise GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGA-- gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---CTTGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTCATTGTGCAATGGAGAGACGGTAgtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTG-GTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGA-CACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCaggtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCaggtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTG-GTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGA-CACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga #### Slc22a8_ID2273_6 --> 0 - 2 Original Alignment GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCT-GACTTGTTCCGAGTGTCCATCCTGCGCCGT---GTGACCTTCTGTCTCTCTCTGGCCtg ttttttccagtgtaagccattgatgatactttccctctggttttgtttagGAGCTGAAGTTTAACTTGCAGAGAGACATCACCTCAGCTGAGGTCAAATATGGCTTATCTCGACTTGT-TCAAGTG---TTCCTACGACGACGAGTGACTTACTGTCTTTCTCTTTCCtggtgagcttgcactgtttcaaatcatgttccacattaggattgactaagaa Alignment from CESAR GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCtg ttttttccagtgtaagccattgatgatactttccctctggttttgtttagGAGCTGAAGTTTAACTTGCAGAGAGACATCACCTCAGCTGAGGTCAAATATGGCTTATCTCGACTTGTTCAAGTGTTCCTACGACGACGAGTGACTTACTGTCTTTCTCTTTCCtggtgagcttgcactgtttcaaatcatgttccacattaggattgactaagaa Alignment from Spaln_aa2Genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG ttttttccagtgtaagccattgatgatactttccctctggttttgtttagGAGCTGAAGTTTAACTTGCAGAGAGACATCACCTCAGCTGAGGTCAAATATGGCTTATCTCGACTTGTTCAAGTGTTCCTACGACGACGAGTGACTTACTGTCTTTCTCTTTCCTGgtgagcttgcactgtttcaaatcatgttccacattaggattgactaagaa Alignment from Spaln_nt2Genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCT-GACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG ttttttccagtgtaagccattgatgatactttccctctggttttgtttagGAGCTGAAGTTTAACTTGCAGAGAGACATCACCTCAGCTGAGGTCAAATATGGCTTATCTCGACTTGTT-CAAGTGTTCCTACGACGACGAGTGACTTACTGTCTTTCTCTTTCCTGgtgagcttgcactgtttcaaatcatgttccacattaggattgactaagaa Alignment from Pairagon GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCT-GACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG ttttttccagtgtaagccattgatgatactttccctctggttttgtttagGAGCTGAAGTTTAACTTGCAGAGAGACATCACCTCAGCTGAGGTCAAATATGGCTTATCTCGACTTGTT-CAAGTGTTCCTACGACGACGAGTGACTTACTGTCTTTCTCTTTCCTGgtgagcttgcactgtttcaaatcatgttccacattaggattgactaagaa Alignment from Exonerate_protein2genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG ttttttccagtgtaagccattgatgatactttccctctggttttgtttagGAGCTGAAGTTTAACTTGCAGAGAGACATCACCTCAGCTGAGGTCAAATATGGCTTATCTCGACTTGTTCAAGTGTTCCTACGACGACGAGTGACTTACTGTCTTTCTCTTTCCTGgtgagcttgcactgtttcaaatcatgttccacattaggattgactaagaa Alignment from Exonerate_coding2genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG ttttttccagtgtaagccattgatgatactttccctctggttttgtttagGAGCTGAAGTTTAACTTGCAGAGAGACATCACCTCAGCTGAGGTCAAATATGGCTTATCTCGACTTGTTCAAGTGTTCCTACGACGACGAGTGACTTACTGTCTTTCTCTTTCCTGgtgagcttgcactgtttcaaatcatgttccacattaggattgactaagaa Alignment from GeneWise GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG ttttttccagtgtaagccattgatgatactttccctctggttttgtttagGAGCTGAAGTTTAACTTGCAGAGAGACATCACCTCAGCTGAGGTCAAATATGGCTTATCTCGACTTGTTCAAGTGTTCCTACGACGACGAGTGACTTACTGTCTTTCTCTTTCCTGgtgagcttgcactgtttcaaatcatgttccacattaggattgactaagaa #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGC-TGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagaaATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCGGCTCCTTCAGCCTGCC-CTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCaggtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagaaATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCGGCTCCTTCAGCCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCaggtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCGGCTCCTTCAGCCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCGGCTCCTTCAGCCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCGGCTCCTTCAGCCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCGGCTCCTTCAGCCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCGGCTCCTTCAGCCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCGGCTCCTTCAGCCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGG-GCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtctgcactggactgtctcatgtggctctctcactttaggCAAACAGGCATGGGCATCAGTAACATATGGCGCTCGGG-TGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACtggtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtctgcactggactgtctcatgtggctctctcactttaggCAAACAGGCATGGGCATCAGTAACATATGGCGCTCGGGTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACtggtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGCGCTCGGGTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATGCTA---CTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGCGCTCGGGTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGG-GCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGCGCTCGGGT-GGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGCGCTCGGGTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGCGCTCGGGTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGCGCTCGGGTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTGGGG-CACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctaggaGCTGTGGGCCTGGTCCTGGGGCCACCCAT-TGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctaggaGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Exonerate_coding2genome atggacgtgttacttggacatggcattttaactgatgccttctgttctaggagctgtgggcctggtcctggggccacccattgacactgtaaaggtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from GeneWise GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAG-ACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACATATCGGGGCATTGTTGACTGTGTTGCTAAGCACAT-TCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from CESAR GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACATATCGGGGCATTGTTGACTGTGTTGCTAAGCACATTCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACATATCGGGGCATTGTTGACTGTGTTGCTAAGCACATTCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACATATCGGGGCATTGTTGACTGTGTTGCTAAGCACATTCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Pairagon GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTG----------------CGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACATATCGGGGCATTGTTGACTGTGTTGCTAAGCACATTCGT----------------CATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACATATCGGGGCATTGTTGACTGTGTTGCTAAGCACATTCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Exonerate_coding2genome attgttattgttggagcaccactggcactggtggtggggggttgttgcaggtacggttacaaacccaaagtacatatcggggcattgttgactgtgttgctaagcacattcgtcatgagtcagtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCAGTC attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACATATCGGGGCATTGTTGACTGTGTTGCTAAGCACATTCGTCATGAGTCAGTAgtggccccccttgttagggtgatagagagactcatctgagcaggtgg #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTC-CCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCCAATTGCTA-TGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCCAATTGCTATGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCCAATTGCTATGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCCAATTGCTATGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCCAATTGCTATGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCCAATTGCTATGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCCAATTGCTATGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCCAATTGCTATGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGGATCAGCTTCTTCATT-CTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagcTACCACTTGGCTGGCATCAGCTTTTTCATCCCTGGGACTAG-CACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from CESAR cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagcTACCACTTGGCTGGCATCAGCTTTTTCATCCCTGGGACTAGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTTTCATCCCTGGGACTAGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Spaln_nt2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTTTCATCCCTGGGACTAGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Pairagon CTACCACCTGGTTGGGATCAGCTTCTTCATTC-TGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTTTCATCCCTGGGACTA-GCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTTTCATCCCTGGGACTAGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Exonerate_coding2genome AGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtAGCTACCACTTGGCTGGCATCAGCTTTTTCATCCCTGGGACTAGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from GeneWise AGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtAGCTACCACTTGGCTGGCATCAGCTTTTTCATCCCTGGGACTAGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct #### Slc29a2_ID789_3 --> 0 - 2 Original Alignment TACTTCCAGGGGCGG-TTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGCTTGGCAGGTA-TAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGtggtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from CESAR TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGCTTGGCAGGTATAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGtggtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Spaln_aa2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGCTTGGCAGGTATAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Spaln_nt2Genome TACTTCCAGGGGCGG-TTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGCTTGGCAGGTA-TAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Pairagon TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGCTTGGCAGGTATAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Exonerate_protein2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGCTTGGCAGGTATAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Exonerate_coding2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGCTTGGCAGGTATAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from GeneWise TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGCTTGGCAGGTATAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCC-AGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagatGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTCAGTCCAA-TCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagatGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTCAGTCCAATCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTCAGTCCAATCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTCAGTCCAATCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGC-CAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTCAGTCCAA-TCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTCAGTCCAATCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Exonerate_coding2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTCAGTCCAATCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTCAGTCCAATCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAG-CTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCCTGCTGCTCT-CACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCCTGCTGCTCTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCCTGCTGCTCTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCCTGCTGCTCTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAG-CTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCCTGCTGCTC-TCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCCTGCTGCTCTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCCTGCTGCTCTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from GeneWise GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCCTGCTGCTCTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca #### Slc3a2_ID2303_6 --> 0 - 2 Original Alignment AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTACGCAGAAT-GCAGAACATCTCCAAGAACCTT---GAAGACaggtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from CESAR AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTACGCAGAATGCAGAACATCTCCAAGAACCTT---GAAGACaggtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Spaln_aa2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTACGCAGAATGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Spaln_nt2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTACGCAGAATGCAGAACATCTCCAAGAACCT---TGAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Pairagon AATGCACCCTTGTACT---------TGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTACGCAGAAT---------GCAGAACATCTCCAAGAACCT---TGAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Exonerate_protein2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTACGCAGAATGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Exonerate_coding2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTACGCAGAATGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from GeneWise AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTACGCAGAATGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAA-AAGGATCAGTATTTCCTAGATAAGAAGATGGTCac ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAACAAGGATC-GTATTTTCTAGATCAGAAGATGGTCacgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAACAAGGATCGTATTTTCTAGATCAGAAGATGGTCacgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAACAAGGATCGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAACAAGGATCGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAA-AAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAACAAGGATC-GTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAACAAGGATCGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAACAAGGATCGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAACAAGGATCGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAA-AGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAACAGACAAG-ACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAACAGACAAGACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAACAGACAAGACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAACAGACAAGACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAA-AGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAACAGACAAGA-CGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAACAGACAAGACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAACAGACAAGACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAACAGACAAGACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAG-GAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGCGAAAAGT-GATAAAGTGGCAGGAGGAACTGGATAGC---TATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGCGAAAAGTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGCGAAAAGTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGCGAAAAGTGATAAAGTGGCAGGAGGAACTGGATAG---CTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGCGAAAAGTGATAAAGTGGCAGGAGGAACTGGATA---GCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGCGAAAAGTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGCGAAAAGTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGCGAAAAGTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGA-ACAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGAACAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGAACAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGA-ACAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGA-ACAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGAACAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGAACAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGAACAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact #### Snx15_ID1466_6 --> 2 - 1 Original Alignment tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTT-GCCCTTTTCGACCCTTACTCCAAAGAGg atgttttcacccctagggtgagtctcaactgctttttaacctttcattagtgGACCCTCTACCATCTGGTCCTGCCCAGGAGGCCCTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTCACACTTTTTG-CCCTTACTCCAAAGAGggttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from CESAR tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgttttcacccctagggtgagtctcaactgctttttaacctttcattagtgGACCCTCTACCATCTGGTCCTGCCCAGGAGGCCCTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTCACACTTTTTGCCCTTACTCCAAAGAGggttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Spaln_aa2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCAGGAGGCCCTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTCACACTTTTTGCCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Spaln_nt2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCAGGAGGCCCTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTCACACTTTTTGCCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Pairagon TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCAGGAGGCCCTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTCACACTTTTTGCCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Exonerate_protein2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCAGGAGGCCCTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTCACACTTTTTGCCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Exonerate_coding2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCAGGAGGCCCTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTCACACTTTTTGCCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from GeneWise TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCAGGAGGCCCTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTCACACTTTTTGCCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAG-CGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcaggaCGATTTGAAGCCTCTGTTATTGAGGAGCCGTCGGA-AGGTGCAGATGACCTGCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcaggaCGATTTGAAGCCTCTGTTATTGAGGAGCCGTCGGAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCCGTCGGAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCCGTCGGAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCCGTCGGAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCCGTCGGAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCCGTCGGAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCCGTCGGAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc #### Snx32_ID1066_12 --> 2 - 0 Original Alignment agCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagaaCTCATGGACTTCAAGCTCTC-CAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from CESAR agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagaaCTCATGGACTTCAAGCTCTCCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Spaln_aa2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGCTCTCCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Spaln_nt2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGCTCTCCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Pairagon AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGCTCTCCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Exonerate_protein2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGCTCTCCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Exonerate_coding2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGCTCTCCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from GeneWise AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGCTCTCCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTT-CGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg aagacttccatgataaaattgctttgcttcaccttcatttcattctccagGATCTATTGTACCGCCGGCTCCCGGGCACTGG-TGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCGGTTTGAGCGCCTCTCTGACTCTGCCAAACAAggtgagtcctgaaggattgcgacagtccacccaccagaaccccattatcaa Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg aagacttccatgataaaattgctttgcttcaccttcatttcattctccagGATCTATTGTACCGCCGGCTCCCGGGCACTGGTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCGGTTTGAGCGCCTCTCTGACTCTGCCAAACAAggtgagtcctgaaggattgcgacagtccacccaccagaaccccattatcaa Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG aagacttccatgataaaattgctttgcttcaccttcatttcattctccagGATCTATTGTACCGCCGGCTCCCGGGCACTGGTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCGGTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagtcctgaaggattgcgacagtccacccaccagaaccccattatcaa Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTC-GGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGC---GCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG aagacttccatgataaaattgctttgcttcaccttcatttcattctccagGATCTATTGTACCGCCGGCTCCCGGGCACTGG-TGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCGGTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagtcctgaaggattgcgacagtccacccaccagaaccccattatcaa Alignment from Pairagon GACCTGTTGTACCGGCGGCT-TCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG aagacttccatgataaaattgctttgcttcaccttcatttcattctccagGATCTATTGTACCGCCGGCTCCCGGGCACTGG-TGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCGGTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagtcctgaaggattgcgacagtccacccaccagaaccccattatcaa Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG aagacttccatgataaaattgctttgcttcaccttcatttcattctccagGATCTATTGTACCGCCGGCTCCCGGGCACTGGTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCGGTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagtcctgaaggattgcgacagtccacccaccagaaccccattatcaa Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG aagacttccatgataaaattgctttgcttcaccttcatttcattctccagGATCTATTGTACCGCCGGCTCCCGGGCACTGGTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCGGTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagtcctgaaggattgcgacagtccacccaccagaaccccattatcaa Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG aagacttccatgataaaattgctttgcttcaccttcatttcattctccagGATCTATTGTACCGCCGGCTCCCGGGCACTGGTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCGGTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagtcctgaaggattgcgacagtccacccaccagaaccccattatcaa #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCT-CACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttagggtaagaagggattgcttttttttgtttgcttttatagAGTGGGCTGCCTCCACTCTG-CCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACACTAGCCTCGTTgtgagtagtagtagggcagagttggagtgttaaaaaggtacataagggtg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAG------TACGCCGGCCTCATC agggtagcttagggtaagaagggattgcttttttttgtttgcttttatagAGTGGGCTGCCTCCACTCTGCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACACTAGCCTCGTTgtgagtagtagtagggcagagttggagtgttaaaaaggtacataagggtg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttagggtaagaagggattgcttttttttgtttgcttttatagAGTGGGCTGCCTCCACTCTGCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACACTAGCCTCGTTgtgagtagtagtagggcagagttggagtgttaaaaaggtacataagggtg Alignment from Spaln_nt2Genome AGTGGCCTCCCTC-ACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACG------CCGGCCTCATC agggtagcttagggtaagaagggattgcttttttttgtttgcttttatagAGTGGGCTGCCTCCACTCTG-CCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACACTAGCCTCGTTgtgagtagtagtagggcagagttggagtgttaaaaaggtacataagggtg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACG------CCGGCCTCATC agggtagcttagggtaagaagggattgcttttttttgtttgcttttatagAGTGGGCTGCCTCCACTCTGCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACACTAGCCTCGTTgtgagtagtagtagggcagagttggagtgttaaaaaggtacataagggtg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttagggtaagaagggattgcttttttttgtttgcttttatagAGTGGGCTGCCTCCACTCTGCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACACTAGCCTCGTTgtgagtagtagtagggcagagttggagtgttaaaaaggtacataagggtg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttagggtaagaagggattgcttttttttgtttgcttttatagAGTGGGCTGCCTCCACTCTGCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACACTAGCCTCGTTgtgagtagtagtagggcagagttggagtgttaaaaaggtacataagggtg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTAC------GCCGGCCTCATC agggtagcttagggtaagaagggattgcttttttttgtttgcttttatagAGTGGGCTGCCTCCACTCTGCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACACTAGCCTCGTTgtgagtagtagtagggcagagttggagtgttaaaaaggtacataagggtg #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCC-TGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG taatgggctgtggtggggctggacataatttacttttggatttcctttagaGATGTGTCCTCTGCAGACTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAAGCTAGAGCAGACAGGTTTTCCTCCCTGCATTG-CATGGGCCAGGAGCTGCTTGCCAGGAGCCATTATGCTGCTCAGGAAgtagacaagatctagagaatgtcactacaatcaaccaactggacccacct Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG taatgggctgtggtggggctggacataatttacttttggatttcctttagaGATGTGTCCTCTGCAGACTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAAGCTAGAGCAGACAGGTTTTCCTCCCTGCATTGCATGGGCCAGGAGCTGCTTGCCAGGAGCCATTATGCTGCTCAGGAAgtagacaagatctagagaatgtcactacaatcaaccaactggacccacct Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG taatgggctgtggtggggctggacataatttacttttggatttcctttagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAAGCTAGAGCAGACAGGTTTTCCTCCCTGCATTGCATGGGCCAGGAGCTGCTTGCCAGGAGCCATTATGCTGCTCAGGAAgtagacaagatctagagaatgtcactacaatcaaccaactggacccacct Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG taatgggctgtggtggggctggacataatttacttttggatttcctttagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAAGCTAGAGCAGACAGGTTTTCCTCCCTGCATTGCATGGGCCAGGAGCTGCTTGCCAGGAGCCATTATGCTGCTCAGGAAgtagacaagatctagagaatgtcactacaatcaaccaactggacccacct Alignment from Pairagon GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCT-CCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG taatgggctgtggtggggctggacataatttacttttggatttcctttagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAAGCTAGAGCAGACAGGTTTTCCTCCCTGCATTG-CATGGGCCAGGAGCTGCTTGCCAGGAGCCATTATGCTGCTCAGGAAgtagacaagatctagagaatgtcactacaatcaaccaactggacccacct Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG taatgggctgtggtggggctggacataatttacttttggatttcctttagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAAGCTAGAGCAGACAGGTTTTCCTCCCTGCATTGCATGGGCCAGGAGCTGCTTGCCAGGAGCCATTATGCTGCTCAGGAAgtagacaagatctagagaatgtcactacaatcaaccaactggacccacct Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG taatgggctgtggtggggctggacataatttacttttggatttcctttagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAAGCTAGAGCAGACAGGTTTTCCTCCCTGCATTGCATGGGCCAGGAGCTGCTTGCCAGGAGCCATTATGCTGCTCAGGAAgtagacaagatctagagaatgtcactacaatcaaccaactggacccacct Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG taatgggctgtggtggggctggacataatttacttttggatttcctttagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAAGCTAGAGCAGACAGGTTTTCCTCCCTGCATTGCATGGGCCAGGAGCTGCTTGCCAGGAGCCATTATGCTGCTCAGGAAgtagacaagatctagagaatgtcactacaatcaaccaactggacccacct #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAG-TGGCAGGAGAAGATGGACTGGCTACAGCTTg atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGCTGGC-GGAGAAAATGGACTGGTTACAACTTggtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGCTGGCGGAGAAAATGGACTGGTTACAACTTggtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGCTGGCGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGCTGGCGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Pairagon ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGCTGGCGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGCTGGCGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGCTGGCGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGCTGGCGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGT-CTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCCTAGTGG-TGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtaaacattgatatcaaatgctaacactggtaaatgaccctaccctcttc Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCCTAGTGGTGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtaaacattgatatcaaatgctaacactggtaaatgaccctttagcatct Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCCTAGTGGTGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctaccctcttc Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCCTAGTGGTGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctaccctcttc Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCCTAGTGGTGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctaccctcttc Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCCTAGTGGTGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctaccctcttc Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCCTAGTGGTGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctaccctcttc Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCCTAGTGGTGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctaccctcttc #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACTTCGAACAGG-CAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACTTCGAACAGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACTTCGAACAGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACTTCGAACAG-GCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACTTCGAACAG-GCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACTTCGAACAGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACTTCGAACAGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACTTCGAACAGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTG-CTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttactaatgttctttcttgcagaGCACAGGGCACACGTGTACCTAG-CCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTaggtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttactaatgttctttcttgcagaGCACAGGGCACACGTGTACCTAGCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTaggtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACCTAGCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACCTAGCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACCTAGCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACCTAGCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACCTAGCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACCTAGCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTG-GAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaagcggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCTACGAGG-ACTTCAAAAGAACaggtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from CESAR CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaagcggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCTACGAGGACTTCAAAAGAACaggtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Spaln_aa2Genome CCCACCTCTACTTGGGC------------------------------------TCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGGTAAGCGGTCCTTTGACCATGCAATTTTTCAAACAGGGCTCTGAATGGAATGCTGCCAACCTACGAGGACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Spaln_nt2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaagcggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCTACGAGGACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Pairagon CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaagcggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCTACGAGGACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Exonerate_protein2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaagcggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCTACGAGGACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Exonerate_coding2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaagcggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCTACGAGGACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from GeneWise CCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAGAG CACACCTCTACTTGGTAAGCGGTCCTTTGACCATGCAATTTTTCAAACAGGGCTCTGAATGGAATGCTGCCAACCTACGAGGACTTCAAAAGAACAGGTgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATC-TTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACC-ACACCTCTACTTGgtaagcggtccttttgagcctacctcttgtctccagGGCTCTGAATGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCACACCTCTACTTGgtaagcggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGGGC------------------------------------TCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCACACCTCTACTTGGTAAGCGGTCCTTTTGAGCCTACCTCTTGTCTCCAGGGCTCTGAATGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCT------ATACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCACACCTCTACTTGgtaagcggtccttttgagcctacctcttgtctccagGGCTCTGAATGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCT------ATACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCACACCTCTACTTGgtaagcggtccttttgagcctacctcttgtctccagGGCTCTGAATGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCACACCTCTACTTGgtaagcggtccttttgagcctacctcttgtctccagGGCTCTGAATGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCACACCTCTACTTGgtaagcggtccttttgagcctacctcttgtctccagGGCTCTGAATGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCACACCTCTACTTGGTAAGCGGTCCTTTTGAGCCTACCTCTTGTCTCCAGGGCTCTGAATGGAA #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACA-TCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagcGGCTTAAGTGTGACGCTCTGGTG-CCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGtggtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagcGGCTTAAGTGTGACGCTCTGGTGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGtggtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGCTCTGGTGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACA-TCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGCTCTGGT-GCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Pairagon GGGCTTCAGTGTGACA-TCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGCTCTGGT-GCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGCTCTGGTGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGCTCTGGTGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGCTCTGGTGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAA-GCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagacAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAACGCGA-GCAC------CAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagacAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAACGC------GAGCACCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAACGC------GAGCACCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAACGC------GAGCACCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAACGC------GAGCACCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAACGC------GAGCACCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAACGC------GAGCACCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAACGCGAG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat #### Stip1_ID1993_8 --> 1 - 0 Original Alignment aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCA-GAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCACGAGC-CCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from CESAR aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCACGAGCCCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Spaln_aa2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCACGAGCCCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Spaln_nt2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCACGAGCCCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Pairagon AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCACGAGCCCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Exonerate_protein2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCACGAGCCCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Exonerate_coding2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCACGAGCCCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from GeneWise AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCACGAGCCCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg #### Stip1_ID1994_7 --> 2 - 2 Original Alignment ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCC-ATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgatttgtctggtttttatatttaactgtctgccctcttctcttttagctGTGCACTTTGACAAGGGTGATTATAATGAATGCCGGGAACTCTGTGAGAAGGCTCATAGAGG-TGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTaagtaagtcatcaaattcaaatgcttggactagacacctttcttgtgtgcct Alignment from CESAR ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgatttgtctggtttttatatttaactgtctgccctcttctcttttagctGTGCACTTTGACAAGGGTGATTATAATGAATGCCGGGAACTCTGTGAGAAGGCTCATAGAGGTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTaagtaagtcatcaaattcaaatgcttggactagacacctttcttgtgtgcct Alignment from Spaln_aa2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggtttttatatttaactgtctgccctcttctcttttagCTGTGCACTTTGACAAGGGTGATTATAATGAATGCCGGGAACTCTGTGAGAAGGCTCATAGAGGTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtaagtcatcaaattcaaatgcttggactagacacctttcttgtgtgcct Alignment from Spaln_nt2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggtttttatatttaactgtctgccctcttctcttttagCTGTGCACTTTGACAAGGGTGATTATAATGAATGCCGGGAACTCTGTGAGAAGGCTCATAGAGGTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtaagtcatcaaattcaaatgcttggactagacacctttcttgtgtgcct Alignment from Pairagon CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGC-CATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggtttttatatttaactgtctgccctcttctcttttagCTGTGCACTTTGACAAGGGTGATTATAATGAATGCCGGGAACTCTGTGAGAAGGCTCATAGAGGTGGA-AGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtaagtcatcaaattcaaatgcttggactagacacctttcttgtgtgcct Alignment from Exonerate_protein2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggtttttatatttaactgtctgccctcttctcttttagCTGTGCACTTTGACAAGGGTGATTATAATGAATGCCGGGAACTCTGTGAGAAGGCTCATAGAGGTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtaagtcatcaaattcaaatgcttggactagacacctttcttgtgtgcct Alignment from Exonerate_coding2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggtttttatatttaactgtctgccctcttctcttttagCTGTGCACTTTGACAAGGGTGATTATAATGAATGCCGGGAACTCTGTGAGAAGGCTCATAGAGGTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtaagtcatcaaattcaaatgcttggactagacacctttcttgtgtgcct Alignment from GeneWise -------------------------------------------------GCTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA CTTGATTTGTCTGGTTTTTATATTTAACTGTCTGCCCTCTTCTCTTTTAGCTGTGCACTTTGACAAGGGTGATTATAATGAATGCCGGGAACTCTGTGAGAAGGCTCATAGAGGTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtaagtcatcaaattcaaatgcttggactagacacctttcttgtgtgcct #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCC-CGACAGTGCAGTGAATTTACCCTCATGGCCag gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCCGTCAGT-CAGTGAACTTACCCTTATGGCTaggtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCCGTCAGTCAGTGAACTTACCCTTATGGCTaggtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCC-GACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCCGTCAGT-CAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAG-CCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCCGTCAGT-CAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg #### Stx5a_ID2331_3 --> 1 - 1 Original Alignment gCGCATTGGGAAAGATCTCAGCAATACATTTGCC-AAGCTGGAGAAGCTAACAATCt ggcattaccccacggtttttcacacatccccgtccaccccccccccccaggCGCATAGGGAAAGATCTGAGTAATACGTTTGCCCAAACTGG-GAAGTTAACAATCtgtgagcatctgacaggcctttcgaggtgggacttaaagccctgcgcccta Alignment from CESAR gCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt ggcattaccccacggtttttcacacatccccgtccaccccccccccccaggCGCATAGGGAAAGATCTGAGTAATACGTTTGCCCAAACTGGGAAGTTAACAATCtgtgagcatctgacaggcctttcgaggtgggacttaaagccctgcgcccta Alignment from Spaln_aa2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ggcattaccccacggtttttcacacatccccgtccaccccccccccccagGCGCATAGGGAAAGATCTGAGTAATACGTTTGCCCAAACTGGGAAGTTAACAATCTgtgagcatctgacaggcctttcgaggtgggacttaaagccctgcgcccta Alignment from Spaln_nt2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ggcattaccccacggtttttcacacatccccgtccaccccccccccccagGCGCATAGGGAAAGATCTGAGTAATACGTTTGCCCAAACTGGGAAGTTAACAATCTgtgagcatctgacaggcctttcgaggtgggacttaaagccctgcgcccta Alignment from Pairagon GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ggcattaccccacggtttttcacacatccccgtccaccccccccccccagGCGCATAGGGAAAGATCTGAGTAATACGTTTGCCCAAACTGGGAAGTTAACAATCTgtgagcatctgacaggcctttcgaggtgggacttaaagccctgcgcccta Alignment from Exonerate_protein2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ggcattaccccacggtttttcacacatccccgtccaccccccccccccagGCGCATAGGGAAAGATCTGAGTAATACGTTTGCCCAAACTGGGAAGTTAACAATCTgtgagcatctgacaggcctttcgaggtgggacttaaagccctgcgcccta Alignment from Exonerate_coding2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ggcattaccccacggtttttcacacatccccgtccaccccccccccccagGCGCATAGGGAAAGATCTGAGTAATACGTTTGCCCAAACTGGGAAGTTAACAATCTgtgagcatctgacaggcctttcgaggtgggacttaaagccctgcgcccta Alignment from GeneWise GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATC--------------------------------------------------- ggcattaccccacggtttttcacacatccccgtccaccccccccccccagGCGCATAGGGAAAGATCTGAGTAATACGTTTGCCCAAACTGGGAAGTTAACAATCTGTGAGCATCTGACAGGCCTTTCGAGGTGGGACTTAAAGCCCTGCGCCCTA #### Stx5a_ID2334_6 --> 0 - 0 Original Alignment TCAAAGCTGGCTTCTATGTCCAATGACTTCAAG-TCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctccaccgcttccctttctgtttgcaagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGCTCAGTTC-AGAAGTGAGGACTGAGgtaggggggataagtagtagggttaaggagtttttttagggtataccaca Alignment from CESAR TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctccaccgcttccctttctgtttgcaagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGCTCAGTTCAGAAGTGAGGACTGAGgtaggggggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Spaln_aa2Genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctccaccgcttccctttctgtttgcaagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGCTCAGTTCAGAAGTGAGGACTGAGgtaggggggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Spaln_nt2Genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctccaccgcttccctttctgtttgcaagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGCTCAGTTCAGAAGTGAGGACTGAGgtaggggggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Pairagon TCAAAGCTGGCTTCTATGTCCAATGACTTCAAG-TCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctccaccgcttccctttctgtttgcaagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGCTCAGTTC-AGAAGTGAGGACTGAGgtaggggggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Exonerate_protein2genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctccaccgcttccctttctgtttgcaagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGCTCAGTTCAGAAGTGAGGACTGAGgtaggggggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Exonerate_coding2genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctccaccgcttccctttctgtttgcaagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGCTCAGTTCAGAAGTGAGGACTGAGgtaggggggataagtagtagggttaaggagtttttttagggtataccaca Alignment from GeneWise --------------------------------------------------TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG GGGGGGGAAAGCAAAATAAATTCTCCACCGCTTCCCTTTCTGTTTGCAAGTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGCTCAGTTCAGAAGTGAGGACTGAGgtaggggggataagtagtagggttaaggagtttttttagggtataccaca #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCC-CTGCCTCTTGCCCCCAACAACCTTg cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTGCCCTTGCCACTAG-ACCCAACAACCTTggtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTGCCCTTGCCACTAGACCCAACAACCTTggtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTGCCCTTGCCACTAGACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCT-GCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTGCCCTTGCCACTAG-ACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCC------CCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTGCC------CTTGCCACTAGACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTGCCCTTGCCACTAGACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTGCCCTTGCCACTAGACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTGCCCTTGCCACTAGACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAA-CGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctaaatgctgtttcatacacttatcttttttttccccagCACCTCCTGGAACCGGTGCT-GTATGCTGTTACAGAAACTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTCCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtgagattagatctcctgatgaacatgtgggtgtctcttgtgggacccaa Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctaaatgctgtttcatacacttatcttttttttccccagCACCTCCTGGAACCGGTGCTGTATGCTGTTACAGAAACTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTCCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtgagattagatctcctgatgaacatgtgggtgtctcttgtgggacctct Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctaaatgctgtttcatacacttatcttttttttccccagCACCTCCTGGAACCGGTGCTGTATGCTGTTACAGAAACTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTCCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtgagattagatctcctgatgaacatgtgggtgtctcttgtgggacccaa Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctaaatgctgtttcatacacttatcttttttttccccagCACCTCCTGGAACCGGTGCTGTATGCTGTTACAGAAACTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTCCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtgagattagatctcctgatgaacatgtgggtgtctcttgtgggacccaa Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctaaatgctgtttcatacacttatcttttttttccccagCACCTCCTGGAACCGGTGCTGTATGCTGTTACAGAAACTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTCCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtgagattagatctcctgatgaacatgtgggtgtctcttgtgggacccaa Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctaaatgctgtttcatacacttatcttttttttccccagCACCTCCTGGAACCGGTGCTGTATGCTGTTACAGAAACTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTCCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtgagattagatctcctgatgaacatgtgggtgtctcttgtgggacccaa Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctaaatgctgtttcatacacttatcttttttttccccagCACCTCCTGGAACCGGTGCTGTATGCTGTTACAGAAACTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTCCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtgagattagatctcctgatgaacatgtgggtgtctcttgtgggacccaa Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctaaatgctgtttcatacacttatcttttttttccccagCACCTCCTGGAACCGGTGCTGTATGCTGTTACAGAAACTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTCCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtgagattagatctcctgatgaacatgtgggtgtctcttgtgggacccaa #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATCTCCTGGCTC-TTCCACTGCCGCATCGTCt tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCCTTCC-CTGCAGGATTGTCtgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCCTTCCCTGCAGGATTGTCtgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCCTTCCCTGCAGGATTGTCTgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCCTTCCCTGCAGGATTGTCTgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Pairagon ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCCTTCCCTGCAGGATTGTCTgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCCTTCCCTGCAGGATTGTCTgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Exonerate_coding2genome tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagatggagcgtagccccaacatttcctggctccttccctgcaggattgtctgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from GeneWise --------------------------------------------------ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT TGAACATGTGGGTGTCTCTTGTGGGACCTCTCATCTGTGGTCTTATCCAGATGGAGCGTAGCCCCAACATTTCCTGGCTCCTTCCCTGCAGGATTGTCTgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCAC-AGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACCAGCATCC-GACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACCAGCATCCGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACCAGCATCCGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACCAGCATCCGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCA-CAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACCAGCATCC-GACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACCAGCATCCGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACCAGCATCCGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACCAGCATCCGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGG-CCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCCAATGG-TCCCTTTCCGCCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAggtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCCAATGGTCCCTTTCCGCCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAggtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCCAATGGTCCCTTTCCGCCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCCAATGGTCCCTTTCCGCCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCCAATGGTCCCTTTCCGCCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCCAATGGTCCCTTTCCGCCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCCAATGGTCCCTTTCCGCCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCCAATGGTCCCTTTCCGCCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATA-CACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagccTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACCACA-ACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagccTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACCACAACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACCACAACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACCACAACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACCACAACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACCACAACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACCACAACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACCACAACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGC-TTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatccatgcattttagctcccgtggtccctgcagGAGGCCTTCTGGTGCCTTAG-GCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgcttgggttgacgcttgaaaaaggggcactgagccatttgaggc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatccatgcattttagctcccgtggtccctgcagGAGGCCTTCTGGTGCCTTAGGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgcttgggttgacgcttgaaaaaggggcactgagccatttgaggc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatccatgcattttagctcccgtggtccctgcagGAGGCCTTCTGGTGCCTTAGGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgcttgggttgacgcttgaaaaaggggcactgagccatttgaggc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatccatgcattttagctcccgtggtccctgcagGAGGCCTTCTGGTGCCTTAGGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgcttgggttgacgcttgaaaaaggggcactgagccatttgaggc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatccatgcattttagctcccgtggtccctgcagGAGGCCTTCTGGTGCCTTAGGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgcttgggttgacgcttgaaaaaggggcactgagccatttgaggc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatccatgcattttagctcccgtggtccctgcagGAGGCCTTCTGGTGCCTTAGGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgcttgggttgacgcttgaaaaaggggcactgagccatttgaggc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatccatgcattttagctcccgtggtccctgcagGAGGCCTTCTGGTGCCTTAGGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgcttgggttgacgcttgaaaaaggggcactgagccatttgaggc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatccatgcattttagctcccgtggtccctgcagGAGGCCTTCTGGTGCCTTAGGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgcttgggttgacgcttgaaaaaggggcactgagccatttgaggc #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATG-TTTGTGTCACCCCAGGGACACgg TATCAGgtgggtaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGCTTTGTGT-GCCTCAAGGACATgggtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from CESAR TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtaaggaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGCTTTGTGTGCCTCAAGGACATgggtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Spaln_aa2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgggtaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGCTTTGTGTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Spaln_nt2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATG-TTTGTGTCACCCCAGGGACACGG TATCAGgtgggtaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGCTTTGTGT-GCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Pairagon TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATG-TTTGTGTCACCCCAGGGACACGG TATCAGgtgggtaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGCTTTGTGT-GCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Exonerate_protein2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgggtaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGCTTTGTGTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Exonerate_coding2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgggtaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGCTTTGTGTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from GeneWise TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgggtaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGCTTTGTGTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCA-GCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCACCCGTCTTGC-TGCCCGGTGCTGGCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccgaatgagggtatgttgccacagGAACTG Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCACCCGTCTTGCTGCCCGGTGCTGGCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgccctcttatatctttttactcttagGAACTG Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCACCCGTCTTGCTGCCCGGTGCTGGCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccgaatgagggtatgttgccacagGAACTG Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCACCCGTCTTGCTGCCCGGTGCTGGCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccgaatgagggtatgttgccacagGAACTG Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCACCCGTCTTGCTGCCCGGTGCTGGCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccgaatgagggtatgttgccacagGAACTG Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCACCCGTCTTGCTGCCCGGTGCTGGCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccgaatgagggtatgttgccacagGAACTG Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCACCCGTCTTGCTGCCCGGTGCTGGCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccgaatgagggtatgttgccacagGAACTG Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCACCCGTCTTGCTGCCCGGTGCTGGCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccgaatgagggtatgttgccacagGAACTG #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGC-TGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gtggatagatgctcgactggtcagcttcctcccttgctcggtgctcacagTTTGTCCCGTCTGAAATTTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGTCTGCATCT-AAACACAGCCTCTTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCAcgtaattgatgtttattgtgtgatgatattataatatcctactgggtacca Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gtggatagatgctcgactggtcagcttcctcccttgctcggtgctcacagTTTGTCCCGTCTGAAATTTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGTCTGCATCTAAACACAGCCTCTTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCAcgtaattgatgtttattgtgtgatgatattataatatcctactgggtacca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggatagatgctcgactggtcagcttcctcccttgctcggtgctcacagTTTGTCCCGTCTGAAATTTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGTCTGCATCTAAACACAGCCTCTTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtaattgatgtttattgtgtgatgatattataatatcctactgggtacca Alignment from Spaln_nt2Genome AGTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggatagatgctcgactggtcagcttcctcccttgctcggtgctcacAGTTTGTCCCGTCTGAAATTTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGTCTGCATCTAAACACAGCCTCTTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtaattgatgtttattgtgtgatgatattataatatcctactgggtacca Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTG-CCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggatagatgctcgactggtcagcttcctcccttgctcggtgctcacagTTTGTCCCGTCTGAAATTTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGTCTGCATCT-AAACACAGCCTCTTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtaattgatgtttattgtgtgatgatattataatatcctactgggtacca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggatagatgctcgactggtcagcttcctcccttgctcggtgctcacagTTTGTCCCGTCTGAAATTTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGTCTGCATCTAAACACAGCCTCTTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtaattgatgtttattgtgtgatgatattataatatcctactgggtacca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggatagatgctcgactggtcagcttcctcccttgctcggtgctcacagTTTGTCCCGTCTGAAATTTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGTCTGCATCTAAACACAGCCTCTTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtaattgatgtttattgtgtgatgatattataatatcctactgggtacca Alignment from GeneWise TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggatagatgctcgactggtcagcttcctcccttgctcggtgctcacagTTTGTCCCGTCTGAAATTTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGTCTGCATCTAAACACAGCCTCTTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtaattgatgtttattgtgtgatgatattataatatcctactgggtacca #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAAC-AGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACCAGCTGGAGCC-TGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACCAGCTGGAGCCTGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACCAGCTGGAGCCTGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACCAGCTGGAGCCTGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACTGatgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAA-CAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACCAGCTGGAG-CCTGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACCAGCTGGAGCCTGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACCAGCTGGAGCCTGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACCAGCTGGAGCCTGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAG-CTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcagtagacaatgtatttcctttacaggCACTTTGGCCAGGCCCATAGGCTGCTGCTCGGGACATTGTCGGAGCCTCATCT-CCTCCTGGGCCTC------TATCTTGTGTTCCTGATTGTCTACAAGTGGGTGAACATCTCCGCAACTAGTGCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgcttggtggctgacctgctcaccagggttgttctaatctcttgtatca Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcagtagacaatgtatttcctttacaggCACTTTGGCCAGGCCCATAGGCTGCTGCTCGGGACATTGTCGGAGCCTCATCTCCTCCTGGGCCTC------TATCTTGTGTTCCTGATTGTCTACAAGTGGGTGAACATCTCCGCAACTAGTGCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgcttggtggctgacctgctcaccagggttgttctaatctcttgtatca Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcagtagacaatgtatttcctttacagGCACTTTGGCCAGGCCCATAGGCTGCTGCTCGGGACATTGTCGGAGCCTCATCTCCTCCTGGGCCTC------TATCTTGTGTTCCTGATTGTCTACAAGTGGGTGAACATCTCCGCAACTAGTGCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgcttggtggctgacctgctcaccagggttgttctaatctcttgtatca Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGC-TCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcagtagacaatgtatttcctttacagGCACTTTGGCCAGGCCCATAGGCTGCTGCTCGGGACATTGTCGGAGCCTCATC-TCCTCCTGGGCCT------CTATCTTGTGTTCCTGATTGTCTACAAGTGGGTGAACATCTCCGCAACTAGTGCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTCTTCCATGGGCAGgtgcttggtggctgacctgctcaccagggttgttctaatctcttgtatca Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAG-CTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcagtagacaatgtatttcctttacagGCACTTTGGCCAGGCCCATAGGCTGCTGCTCGGGACATTGTCGGAGCCTCATC-TCCTCCTGGGCCT------CTATCTTGTGTTCCTGATTGTCTACAAGTGGGTGAACATCTCCGCAACTAGTGCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTCTTCCATGGGCAGgtgcttggtggctgacctgctcaccagggttgttctaatctcttgtatca Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcagtagacaatgtatttcctttacagGCACTTTGGCCAGGCCCATAGGCTGCTGCTCGGGACATTGTCGGAGCCTCATCTCCTCCTGGGCCTC------TATCTTGTGTTCCTGATTGTCTACAAGTGGGTGAACATCTCCGCAACTAGTGCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgcttggtggctgacctgctcaccagggttgttctaatctcttgtatca Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcagtagacaatgtatttcctttacagGCACTTTGGCCAGGCCCATAGGCTGCTGCTCGGGACATTGTCGGAGCCTCATCTCCTCCTGGGCCTC------TATCTTGTGTTCCTGATTGTCTACAAGTGGGTGAACATCTCCGCAACTAGTGCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgcttggtggctgacctgctcaccagggttgttctaatctcttgtatca Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcagtagacaatgtatttcctttacagGCACTTTGGCCAGGCCCATAGGCTGCTGCTCGGGACATTGTCGGAGCCTCATCTCCTCCTGGGCCTC------TATCTTGTGTTCCTGATTGTCTACAAGTGGGTGAACATCTCCGCAACTAGTGCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgcttggtggctgacctgctcaccagggttgttctaatctcttgtatca #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAAC-CACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACAAACCCACC-GAGCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGgtgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACAAACCCACCGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGgtgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACAAACCCACCGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACAAACCCACCGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACAAACCCACCGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACAAACCCACCGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACAAACCCACCGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACAAACCCACCGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAGCACTCCATG-CTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagcGATGAGTATCTATCCCAGCACTCGATGCCTAACCTTGA-CCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagcGATGAGTATCTATCCCAGCACTCGATGCCTAACCTTGACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCCTAACCTTGACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCCTAACCTTGACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG CAGGTTACCTGACGTGAAGTATAGCTTAGTTTTTCTTACATATCTTTCAGCGATGAGTATCTATCCCAGCACTCGATGCCTAACCTTGACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCCTAACCTTGACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCCTAACCTTGACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCCTAACCTTGACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCCTAC-AAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagcTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCAG-CTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagactcaatttccactcttttcccagGGTGAGCCT Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagcTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCAGCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagactcgccactttcatctctctcagGGTGAGCCT Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCAGCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagactcaatttccactcttttcccagGGTGAGCCT Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCAGCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagactcaatttccactcttttcccagGGTGAGCCT Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAGCCCTA-CAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCAG-CTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagactcaatttccactcttttcccagGGTGAGCCT Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCAGCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagactcaatttccactcttttcccagGGTGAGCCT Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCAGCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagactcaatttccactcttttcccagGGTGAGCCT Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCAGCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagactcaatttccactcttttcccagGGTGAGCCT #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGG-CCACATTCAGACCTGAAGGTCaa aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCCAC-TTCTGACCTGAAAGTTaagtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCCACTTCTGACCTGAAAGTTaagtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCCACTTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCCACTTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCCACTTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCCACTTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCCACTTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCCACTTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTCCAGAGACGC-TTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCCTTTG-GGTGGATGTGCAGCACTGTGAGGAACTGGACAAGACATTTagtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCCTTTGGGTGGATGTGCAGCACTGTGAGGAACTGGACAAGACATTTagtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCCTTTGGGTGGATGTGCAGCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCCTTTGGGTGGATGTGCAGCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCCTTTGGGTGGATGTGCAGCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCCTTTGGGTGGATGTGCAGCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCCTTTGGGTGGATGTGCAGCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCCTTTGGGTGGATGTGCAGCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGT-AGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tttgtgagtttttctcagttactggggctctctctctttgccatcaaaagggTTTCTAGAGACTAAAAGCATGACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTCAGCTGCACCT-TGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtgaggcacaccagctttctgactccttctgatttctccctgatactggg Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tttgtgagtttttctcagttactggggctctctctctttgccatcaaaagggTTTCTAGAGACTAAAAGCATGACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTCAGCTGCACCTTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtgaggcacaccagctttctgactccttctgatttctccctgatactggg Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tttgtgagtttttctcagttactggggctctctctctttgccatcaaaagGGTTTCTAGAGACTAAAAGCATGACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTCAGCTGCACCTTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtgaggcacaccagctttctgactccttctgatttctccctgatactggg Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tttgtgagtttttctcagttactggggctctctctctttgccatcaaaagGGTTTCTAGAGACTAAAAGCATGACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTCAGCTGCACCTTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtgaggcacaccagctttctgactccttctgatttctccctgatactggg Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGT-AGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tttgtgagtttttctcagttactggggctctctctctttgccatcaaaagGGTTTCTAGAGACTAAAAGCATGACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTCAGCTGCACCTT-GAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtgaggcacaccagctttctgactccttctgatttctccctgatactggg Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tttgtgagtttttctcagttactggggctctctctctttgccatcaaaagGGTTTCTAGAGACTAAAAGCATGACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTCAGCTGCACCTTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtgaggcacaccagctttctgactccttctgatttctccctgatactggg Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tttgtgagtttttctcagttactggggctctctctctttgccatcaaaagGGTTTCTAGAGACTAAAAGCATGACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTCAGCTGCACCTTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtgaggcacaccagctttctgactccttctgatttctccctgatactggg Alignment from GeneWise --TTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tttgtgagtttttctcagttactggggctctctctctttgccatcaaaagGGTTTCTAGAGACTAAAAGCATGACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTCAGCTGCACCTTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtgaggcacaccagctttctgactccttctgatttctccctgatactggg #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGC-TGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGG-GAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAggtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAggtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAG-CTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGG-GAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGA-GACTGCTGTTGCACAGAGTTACAGAAACAG ctgtctctactttgaccaagtccattgctctgcctatgggttcctgctagagATACCTCACAGTAGGCGACTGCT-CTGCACAGAATTACAGAAACAGgtaagtatttactgctgctcaaaccagtgcactgcttcccattgacatag Alignment from CESAR agATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ctgtctctactttgaccaagtccattgctctgcctatgggttcctgctagagATACCTCACAGTAGGCGACTGCTCTGCACAGAATTACAGAAACAGgtaagtatttactgctgctcaaaccagtgcactgcttcccattgacatag Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ctgtctctactttgaccaagtccattgctctgcctatgggttcctgctagAGATACCTCACAGTAGGCGACTGCTCTGCACAGAATTACAGAAACAGgtaagtatttactgctgctcaaaccagtgcactgcttcccattgacatag Alignment from Spaln_nt2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ctgtctctactttgaccaagtccattgctctgcctatgggttcctgctagAGATACCTCACAGTAGGCGACTGCTCTGCACAGAATTACAGAAACAGgtaagtatttactgctgctcaaaccagtgcactgcttcccattgacatag Alignment from Pairagon AGATACCACACAGCAGA-GACTGCTGTTGCACAGAGTTACAGAAACAG ctgtctctactttgaccaagtccattgctctgcctatgggttcctgctagAGATACCTCACAGTAGGCGACTGCT-CTGCACAGAATTACAGAAACAGgtaagtatttactgctgctcaaaccagtgcactgcttcccattgacatag Alignment from Exonerate_protein2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ctgtctctactttgaccaagtccattgctctgcctatgggttcctgctagAGATACCTCACAGTAGGCGACTGCTCTGCACAGAATTACAGAAACAGgtaagtatttactgctgctcaaaccagtgcactgcttcccattgacatag Alignment from Exonerate_coding2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ctgtctctactttgaccaagtccattgctctgcctatgggttcctgctagAGATACCTCACAGTAGGCGACTGCTCTGCACAGAATTACAGAAACAGgtaagtatttactgctgctcaaaccagtgcactgcttcccattgacatag Alignment from GeneWise AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ctgtctctactttgaccaagtccattgctctgcctatgggttcctgctagAGATACCTCACAGTAGGCGACTGCTCTGCACAGAATTACAGAAACAGgtaagtatttactgctgctcaaaccagtgcactgcttcccattgacatag #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAA-TACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAACTACCAGT-GCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCagtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAACTACCAGTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCagtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAACTACCAGTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAACTACCAGTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAA-TACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAACTACCAG-TGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAACTACCAGTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAACTACCAGTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAACTACCAGTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACC-AGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagcaTCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCCAGCCCTG-GGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagcaTCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCCAGCCCTGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCCAGCCCTGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCCAGCCCTGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCCAGCCCTGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCCAGCCCTGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCCAGCCCTGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCCAGCCCTGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACC-ATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCCATGTCTCACT-CCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCCATGTCTCACTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCCATGTCTCACTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCCATGTCTCACTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCA-CCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCCATGTCTCA-CTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCCATGTCTCACTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCCATGTCTCACTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCCATGTCTCACTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTC-CTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACAGCTATCTTCCCTAATCT-AGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTaggtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACAGCTATCTTCCCTAATCTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTaggtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACAGCTATCTTCCCTAATCTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACAGCTATCTTCCCTAATCTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACAGCTATCTTCCCTAATCTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACAGCTATCTTCCCTAATCTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACAGCTATCTTCCCTAATCTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACAGCTATCTTCCCTAATCTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGT-CCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCCAGCAGCCC-TTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCCAGCAGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCCAGCAGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCCAGCAGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCCAGCAGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCCAGCAGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCCAGCAGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCCAGCAGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTC-AACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAG-GTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTT-CAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAG-GTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Exonerate_coding2genome CTGCAGGCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgTTGAAGGCCACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct #### Trmt112_ID1862_3 --> 0 - 0 Original Alignment TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTAT-GAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATCGAGCATG-TGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from CESAR TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATCGAGCATGTGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Spaln_aa2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATCGAGCATGTGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Spaln_nt2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATCGAGCATGTGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Pairagon TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAG--------ACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTAT--------CGAGCATGTGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Exonerate_protein2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATCGAGCATGTGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Exonerate_coding2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATCGAGCATGTGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from GeneWise TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATCGAGCATGTGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct #### Trpt1_ID1980_3 --> 2 - 0 Original Alignment atGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTG-CCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctccccagcattttatccgcaggatcattgtcactcgtgtttagatGGATTCGTGCCCCTACAAGCCCTTCTGCAGCTGCCCGCAGTTCC-CAGCTTTTCCATTGAAGATGTGCAGCTTGTAGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGCACTGGGCTCCTCATCAGGGCAAACCAGGGACACTCCCTACAAgtgataggcaatcgatgggtgaggagtcacatcttgtttgaatgtatgaa Alignment from CESAR atGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctccccagcattttatccgcaggatcattgtcactcgtgtttagatGGATTCGTGCCCCTACAAGCCCTTCTGCAGCTGCCCGCAGTTCCCAGCTTTTCCATTGAAGATGTGCAGCTTGTAGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGCACTGGGCTCCTCATCAGGGCAAACCAGGGACACTCCCTACAAgtgataggcaatcgatgggtgaggagtcacatcttgtttgaatgtatgaa Alignment from Spaln_aa2Genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctccccagcattttatccgcaggatcattgtcactcgtgtttagATGGATTCGTGCCCCTACAAGCCCTTCTGCAGCTGCCCGCAGTTCCCAGCTTTTCCATTGAAGATGTGCAGCTTGTAGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGCACTGGGCTCCTCATCAGGGCAAACCAGGGACACTCCCTACAAgtgataggcaatcgatgggtgaggagtcacatcttgtttgaatgtatgaa Alignment from Spaln_nt2Genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctccccagcattttatccgcaggatcattgtcactcgtgtttagATGGATTCGTGCCCCTACAAGCCCTTCTGCAGCTGCCCGCAGTTCCCAGCTTTTCCATTGAAGATGTGCAGCTTGTAGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGCACTGGGCTCCTCATCAGGGCAAACCAGGGACACTCCCTACAAgtgataggcaatcgatgggtgaggagtcacatcttgtttgaatgtatgaa Alignment from Pairagon ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCC-CAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctccccagcattttatccgcaggatcattgtcactcgtgtttagATGGATTCGTGCCCCTACAAGCCCTTCTGCAGCTGCCCGCAGTTCC-CAGCTTTTCCATTGAAGATGTGCAGCTTGTAGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGCACTGGGCTCCTCATCAGGGCAAACCAGGGACACTCCCTACAAgtgataggcaatcgatgggtgaggagtcacatcttgtttgaatgtatgaa Alignment from Exonerate_protein2genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctccccagcattttatccgcaggatcattgtcactcgtgtttagATGGATTCGTGCCCCTACAAGCCCTTCTGCAGCTGCCCGCAGTTCCCAGCTTTTCCATTGAAGATGTGCAGCTTGTAGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGCACTGGGCTCCTCATCAGGGCAAACCAGGGACACTCCCTACAAgtgataggcaatcgatgggtgaggagtcacatcttgtttgaatgtatgaa Alignment from Exonerate_coding2genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctccccagcattttatccgcaggatcattgtcactcgtgtttagATGGATTCGTGCCCCTACAAGCCCTTCTGCAGCTGCCCGCAGTTCCCAGCTTTTCCATTGAAGATGTGCAGCTTGTAGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGCACTGGGCTCCTCATCAGGGCAAACCAGGGACACTCCCTACAAgtgataggcaatcgatgggtgaggagtcacatcttgtttgaatgtatgaa Alignment from GeneWise ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctccccagcattttatccgcaggatcattgtcactcgtgtttagATGGATTCGTGCCCCTACAAGCCCTTCTGCAGCTGCCCGCAGTTCCCAGCTTTTCCATTGAAGATGTGCAGCTTGTAGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGCACTGGGCTCCTCATCAGGGCAAACCAGGGACACTCCCTACAAgtgataggcaatcgatgggtgaggagtcacatcttgtttgaatgtatgaa #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACA-CTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgtatgaagggagcttctccgctgccacattctctctcctttctcagGTCCCTGAGTTGGAATTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACCTAGTCC-TGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGCCAAGGAAGGACATGCAATCACCTGGCTTCAGGATTGCCA---GACCCTGGTGCTATCAGTggtagattctcattaacccatccctcttccctggactgcaccagcgatcat Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgtatgaagggagcttctccgctgccacattctctctcctttctcagGTCCCTGAGTTGGAATTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACCTAGTCCTGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGCCAAGGAAGGACATGCAATCACCTGGCTTCAGGATTGCCA---GACCCTGGTGCTATCAGTggtagattctcattaacccatccctcttccctggactgcaccagcgatcat Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgtatgaagggagcttctccgctgccacattctctctcctttctcagGTCCCTGAGTTGGAATTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACCTAGTCCTGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGGTCACGCCAAGGAAGGACATGCAATCACCTGGCTTCAGGATTGCCA---GACCCTGGTGCTATCAGTGgtagattctcattaacccatccctcttccctggactgcaccagcgatcat Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACAC-TAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgtatgaagggagcttctccgctgccacattctctctcctttctcagGTCCCTGAGTTGGAATTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACCTAGTCC-TGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGG---GTCACGCCAAGGAAGGACATGCAATCACCTGGCTTCAGGATTGCC---AGACCCTGGTGCTATCAGTGgtagattctcattaacccatccctcttccctggactgcaccagcgatcat Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACA-CTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgtatgaagggagcttctccgctgccacattctctctcctttctcagGTCCCTGAGTTGGAATTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACCTAGTCC-TGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGG---GTCACGCCAAGGAAGGACATGCAATCACCTGGCTTCAGGATTGCC---AGACCCTGGTGCTATCAGTGgtagattctcattaacccatccctcttccctggactgcaccagcgatcat Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgtatgaagggagcttctccgctgccacattctctctcctttctcagGTCCCTGAGTTGGAATTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACCTAGTCCTGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGCCAAGGAAGGACATGCAATCACCTGGCTTCAGGATTGCCA---GACCCTGGTGCTATCAGTGgtagattctcattaacccatccctcttccctggactgcaccagcgatcat Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgtatgaagggagcttctccgctgccacattctctctcctttctcagGTCCCTGAGTTGGAATTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACCTAGTCCTGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGCCAAGGAAGGACATGCAATCACCTGGCTTCAGGATTGCCA---GACCCTGGTGCTATCAGTGgtagattctcattaacccatccctcttccctggactgcaccagcgatcat Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgtatgaagggagcttctccgctgccacattctctctcctttctcagGTCCCTGAGTTGGAATTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACCTAGTCCTGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGCCAAGGAAGGACATGCAATCACCTGGCTTCAGGATTGCCA---GACCCTGGTGCTATCAGTGgtagattctcattaacccatccctcttccctggactgcaccagcgatcat #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGTGAGGTGGCG-GTGTTCATCGATGGACCCCTAGCCCTCACAg tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcaggcATTCGACCAAATTGTGGTGTGACACGTGTTTA-TGATGGGCCACTAGCCCTCACAggtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from CESAR gcATTCGTCCAAATTGTGAGGTGGCG---GTGTTCATCGATGGACCCCTAGCCCTCACAg tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcaggcATTCGACCAAATTGTGGTGTGACACGTGTTTAT---GATGGGCCACTAGCCCTCACAggtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGACACGTGTTTATGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGGCG-GTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGACACGTGTTTAT-GATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTGGCG-GTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGACACGTGTTTAT-GATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGACACGTGTTTATGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Exonerate_coding2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGACACGTGTTTATGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from GeneWise GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGACACGTGTTTATGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga #### Trpt1_ID1983_6 --> 2 - 1 Original Alignment atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCC-AAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc agagaatgtgactatcatatgatcactcttaattgacttttccttttcagatGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGGAATGTTGAAGGTTTCCTGCTTCCCCAAGTACT-TAAGGAGGCTCTCCAGCTTCGGCCTATGcgtgaggatataacctgccctgatctgacgctcccaataagtctgtgcgaa Alignment from CESAR atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc agagaatgtgactatcatatgatcactcttaattgacttttccttttcagatGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGGAATGTTGAAGGTTTCCTGCTTCCCCAAGTACTTAAGGAGGCTCTCCAGCTTCGGCCTATGcgtgaggatataacctgccctgatctgacgctcccaataagtctgtgcgaa Alignment from Spaln_aa2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcttaattgacttttccttttcagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGGAATGTTGAAGGTTTCCTGCTTCCCCAAGTACTTAAGGAGGCTCTCCAGCTTCGGCCTATGCgtgaggatataacctgccctgatctgacgctcccaataagtctgtgcgaa Alignment from Spaln_nt2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCC-AAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcttaattgacttttccttttcagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGGAATGTTGAAGGTTTCCTGCTTCCCCAAGTACTT-AAGGAGGCTCTCCAGCTTCGGCCTATGCgtgaggatataacctgccctgatctgacgctcccaataagtctgtgcgaa Alignment from Pairagon ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTT-CCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcttaattgacttttccttttcagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGGAATGTTGAAGGTTTCCTGCTTCCCCAAGTACTT-AAGGAGGCTCTCCAGCTTCGGCCTATGCgtgaggatataacctgccctgatctgacgctcccaataagtctgtgcgaa Alignment from Exonerate_protein2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcttaattgacttttccttttcagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGGAATGTTGAAGGTTTCCTGCTTCCCCAAGTACTTAAGGAGGCTCTCCAGCTTCGGCCTATGCgtgaggatataacctgccctgatctgacgctcccaataagtctgtgcgaa Alignment from Exonerate_coding2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcttaattgacttttccttttcagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGGAATGTTGAAGGTTTCCTGCTTCCCCAAGTACTTAAGGAGGCTCTCCAGCTTCGGCCTATGCgtgaggatataacctgccctgatctgacgctcccaataagtctgtgcgaa Alignment from GeneWise ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcttaattgacttttccttttcagATGGAATTCCTTTC---TGCTTTGCCAATGGGGTGATTCTGACTCCAGGGAATGTTGAAGGTTTCCTGCTTCCCCAAGTACTTAAGGAGGCTCTCCAGCTTCGGCCTATGCgtgaggatataacctgccctgatctgacgctcccaataagtctgtgcgaa #### Tut1_ID2554_7 --> 2 - 1 Original Alignment gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACG-TTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg acacaaagacttggtcttgtaaatagctgttccctgttatttattttcaggaGGTGGCCCCCTTCTCAACAACTAT---GTAACCCTTGTTGGTTA-CTACTTGCTTCAGACTAGAGACCCTCCAGTGCTACCTACTGTGGCCCAGCTAACCCAAAGGGCAggtatacaatggcctctacaatctggatcacagctacactctggcaatgcc Alignment from CESAR gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg acacaaagacttggtcttgtaaatagctgttccctgttatttattttcaggaGGTGGCCCCCTTCTCAACAACTAT---GTAACCCTTGTTGGTTACTACTTGCTTCAGACTAGAGACCCTCCAGTGCTACCTACTGTGGCCCAGCTAACCCAAAGGGCAggtatacaatggcctctacaatctggatcacagctacactctggcaatgcc Alignment from Spaln_aa2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaaatagctgttccctgttatttattttcagGAGGTGGCCCCCTTCTCAACAACTAT---GTAACCCTTGTTGGTTACTACTTGCTTCAGACTAGAGACCCTCCAGTGCTACCTACTGTGGCCCAGCTAACCCAAAGGGCAGgtatacaatggcctctacaatctggatcacagctacactctggcaatgcc Alignment from Spaln_nt2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaaatagctgttccctgttatttattttcagGAGGTGGCCCCCTTCTCAACAACTATG--TAACCCTTGTTGGTTA-CTACTTGCTTCAGACTAGAGACCCTCCAGTGCTACCTACTGTGGCCCAGCTAACCCAAAGGGCAGgtatacaatggcctctacaatctggatcacagctacactctggcaatgcc Alignment from Pairagon GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGAT-----------------CTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaaatagctgttccctgttatttattttcagGAGGTGGCCCCCTTCTCAACAACT--------------------ATGTAACCCTTGTTGGTTACTACTTGCTTCAGACTAGAGACCCTCCAGTGCTACCTACTGTGGCCCAGCTAACCCAAAGGGCAGgtatacaatggcctctacaatctggatcacagctacactctggcaatgcc Alignment from Exonerate_protein2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaaatagctgttccctgttatttattttcagGAGGTGGCCCCCTTCTCAACAACTAT---GTAACCCTTGTTGGTTACTACTTGCTTCAGACTAGAGACCCTCCAGTGCTACCTACTGTGGCCCAGCTAACCCAAAGGGCAGgtatacaatggcctctacaatctggatcacagctacactctggcaatgcc Alignment from Exonerate_coding2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaaatagctgttccctgttatttattttcagGAGGTGGCCCCCTTCTCAACAACTAT---GTAACCCTTGTTGGTTACTACTTGCTTCAGACTAGAGACCCTCCAGTGCTACCTACTGTGGCCCAGCTAACCCAAAGGGCAGgtatacaatggcctctacaatctggatcacagctacactctggcaatgcc Alignment from GeneWise GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaaatagctgttccctgttatttattttcagGAGGTGGCCCCCTTCTCAACAACTAT---GTAACCCTTGTTGGTTACTACTTGCTTCAGACTAGAGACCCTCCAGTGCTACCTACTGTGGCCCAGCTAACCCAAAGGGCAGgtatacaatggcctctacaatctggatcacagctacactctggcaatgcc #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTCACA-GGGAACCAGGGCATCGAGGCTGCGATGGATtg agggtaattatggttttaggtacaacattgcacgtgtgctctccatgcaggGAGAAGGCTCTTGCCCTAACACGGAAACC-TGGCATCGAGGCTGCGATGGCTtggtgagtagacaatctgcacatttggtgggtaataaggtgggccccagaat Alignment from CESAR gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg agggtaattatggttttaggtacaacattgcacgtgtgctctccatgcaggGAGAAGGCTCTTGCCCTAACACGGAAACCTGGCATCGAGGCTGCGATGGCTtggtgagtagacaatctgcacatttggtgggtaataaggtgggccccagaat Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgcacgtgtgctctccatgcagGGAGAAGGCTCTTGCCCTAACACGGAAACCTGGCATCGAGGCTGCGATGGCTTGgtgagtagacaatctgcacatttggtgggtaataaggtgggccccagaat Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgcacgtgtgctctccatgcagGGAGAAGGCTCTTGCCCTAACACGGAAACCTGGCATCGAGGCTGCGATGGCTTGgtgagtagacaatctgcacatttggtgggtaataaggtgggccccagaat Alignment from Pairagon GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgcacgtgtgctctccatgcagGGAGAAGGCTCTTGCCCTAACACGGAAACCTGGCATCGAGGCTGCGATGGCTTGgtgagtagacaatctgcacatttggtgggtaataaggtgggccccagaat Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgcacgtgtgctctccatgcagGGAGAAGGCTCTTGCCCTAACACGGAAACCTGGCATCGAGGCTGCGATGGCTTGgtgagtagacaatctgcacatttggtgggtaataaggtgggccccagaat Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgcacgtgtgctctccatgcagGGAGAAGGCTCTTGCCCTAACACGGAAACCTGGCATCGAGGCTGCGATGGCTTGgtgagtagacaatctgcacatttggtgggtaataaggtgggccccagaat Alignment from GeneWise GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgcacgtgtgctctccatgcagGGAGAAGGCTCTTGCCCTAACACGGAAACCTGGCATCGAGGCTGCGATGGCTTGgtgagtagacaatctgcacatttggtgggtaataaggtgggccccagaat #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAA-CCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCCAAGC-CTCAGAGCAAGTTGGGCCTGAAggtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCCAAGCCTCAGAGCAAGTTGGGCCTGAAggtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca #### Ubxn1_ID2442_6 --> 1 - 0 Original Alignment aCAAAGGGTTCGAGAAAAAATT-GAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagaCAGAGAACTCGAGAAAAGATTCGAAAGAG-CAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from CESAR aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagaCAGAGAACTCGAGAAAAGATTCGAAAGAGCAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Spaln_aa2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagACAGAGAACTCGAGAAAAGATTCGAAAGAGCAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Spaln_nt2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagACAGAGAACTCGAGAAAAGATTCGAAAGAGCAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Pairagon ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagACAGAGAACTCGAGAAAAGATTCGAAAGAGCAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Exonerate_protein2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagACAGAGAACTCGAGAAAAGATTCGAAAGAGCAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Exonerate_coding2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagACAGAGAACTCGAGAAAAGATTCGAAAGAGCAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from GeneWise ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagACAGAGAACTCGAGAAAAGATTCGAAAGAGCAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact #### Ubxn1_ID2444_8 --> 0 - 1 Original Alignment GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACT-TTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGA-CCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGggtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from CESAR GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGACCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGggtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Spaln_aa2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGACCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Spaln_nt2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGACCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Pairagon GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGACCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Exonerate_protein2genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGACCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Exonerate_coding2genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGACCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from GeneWise GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGACCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTAT-CTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCCTCC-GGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct #### Unc93b1_ID217_8 --> 0 - 0 Original Alignment GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAG-ATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaactggcttttccctttcttacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGCATTG-CCTGCGAAGTGTGGGCTGGGGTAACATCTTTCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCATTCTTTATCTACAGTGGATTTGAAGTGCTTTTTGCCTGTACGGGTTTTGCACTTgtgagggcagtgctggtaataacacacaatacaggtagctcatatggccg Alignment from CESAR GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaactggcttttccctttcttacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGCATTGCCTGCGAAGTGTGGGCTGGGGTAACATCTTTCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCATTCTTTATCTACAGTGGATTTGAAGTGCTTTTTGCCTGTACGGGTTTTGCACTTgtgagggcagtgctggtaataacacacaatacaggtagctcatatggccg Alignment from Spaln_aa2Genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaactggcttttccctttcttacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGCATTGCCTGCGAAGTGTGGGCTGGGGTAACATCTTTCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCATTCTTTATCTACAGTGGATTTGAAGTGCTTTTTGCCTGTACGGGTTTTGCACTTgtgagggcagtgctggtaataacacacaatacaggtagctcatatggccg Alignment from Spaln_nt2Genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaactggcttttccctttcttacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGCATTGCCTGCGAAGTGTGGGCTGGGGTAACATCTTTCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCATTCTTTATCTACAGTGGATTTGAAGTGCTTTTTGCCTGTACGGGTTTTGCACTTgtgagggcagtgctggtaataacacacaatacaggtagctcatatggccg Alignment from Pairagon GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaactggcttttccctttcttacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGCATTGCCTGCGAAGTGTGGGCTGGGGTAACATCTTTCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCATTCTTTATCTACAGTGGATTTGAAGTGCTTTTTGCCTGTACGGGTTTTGCACTTgtgagggcagtgctggtaataacacacaatacaggtagctcatatggccg Alignment from Exonerate_protein2genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaactggcttttccctttcttacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGCATTGCCTGCGAAGTGTGGGCTGGGGTAACATCTTTCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCATTCTTTATCTACAGTGGATTTGAAGTGCTTTTTGCCTGTACGGGTTTTGCACTTgtgagggcagtgctggtaataacacacaatacaggtagctcatatggccg Alignment from Exonerate_coding2genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaactggcttttccctttcttacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGCATTGCCTGCGAAGTGTGGGCTGGGGTAACATCTTTCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCATTCTTTATCTACAGTGGATTTGAAGTGCTTTTTGCCTGTACGGGTTTTGCACTTgtgagggcagtgctggtaataacacacaatacaggtagctcatatggccg Alignment from GeneWise GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaactggcttttccctttcttacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGCATTGCCTGCGAAGTGTGGGCTGGGGTAACATCTTTCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCATTCTTTATCTACAGTGGATTTGAAGTGCTTTTTGCCTGTACGGGTTTTGCACTTgtgagggcagtgctggtaataacacacaatacaggtagctcatatggccg #### Vegfb_ID1955_5 --> 1 - 2 Original Alignment aCCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACag tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagaCCTAAAAAGAAGGAGCACTA-TGTTAGGCCCGACcggtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from CESAR aCCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACag tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagaCCTAAAAAGAAGGAGCACTATGTTAGGCCCGACcggtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Spaln_aa2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGCACTATGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Spaln_nt2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGCACTATGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Pairagon ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGCACTATGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Exonerate_protein2genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGCACTATGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Exonerate_coding2genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGCACTATGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from GeneWise ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGCACTATGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTA-GAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTACGAGAGAA-GGAGTATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTaggtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTACGAGAGAAGGAGTATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTaggtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Spaln_aa2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTACGAGAGAAGGAGTATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Spaln_nt2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTACGAGAGAAGGAGTATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTA-GAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTACGAGAG-AAGGAGTATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTACGAGAGAAGGAGTATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTACGAGAGAAGGAGTATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from GeneWise GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTACGAGAGAAGGAGTATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg #### Vps13a_ID4057_66 --> 0 - 1 Original Alignment GGTTTTGTAAGTGGCATTACAGGGATT-GTTACAAAGCCAATTAAAg gccgtcctgtcataattctataataataccagatcctttttaccccacagGGTTTTGTAAGTGGTATTACAGGAATTCGTTT-AAAGCCAATAAAAggtgagggtcaccttgcctggtatatatttcacatgtgtcgttctcatttg Alignment from CESAR GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAg gccgtcctgtcataattctataataataccagatcctttttaccccacagGGTTTTGTAAGTGGTATTACAGGAATTCGTTTAAAGCCAATAAAAggtgagggtcaccttgcctggtatatatttcacatgtgtcgttctcatttg Alignment from Spaln_aa2Genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG gccgtcctgtcataattctataataataccagatcctttttaccccacagGGTTTTGTAAGTGGTATTACAGGAATTCGTTTAAAGCCAATAAAAGgtgagggtcaccttgcctggtatatatttcacatgtgtcgttctcatttg Alignment from Spaln_nt2Genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG gccgtcctgtcataattctataataataccagatcctttttaccccacagGGTTTTGTAAGTGGTATTACAGGAATTCGTTTAAAGCCAATAAAAGgtgagggtcaccttgcctggtatatatttcacatgtgtcgttctcatttg Alignment from Pairagon GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG gccgtcctgtcataattctataataataccagatcctttttaccccacagGGTTTTGTAAGTGGTATTACAGGAATTCGTTTAAAGCCAATAAAAGgtgagggtcaccttgcctggtatatatttcacatgtgtcgttctcatttg Alignment from Exonerate_protein2genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG gccgtcctgtcataattctataataataccagatcctttttaccccacagGGTTTTGTAAGTGGTATTACAGGAATTCGTTTAAAGCCAATAAAAGgtgagggtcaccttgcctggtatatatttcacatgtgtcgttctcatttg Alignment from Exonerate_coding2genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG gccgtcctgtcataattctataataataccagatcctttttaccccacagGGTTTTGTAAGTGGTATTACAGGAATTCGTTTAAAGCCAATAAAAGgtgagggtcaccttgcctggtatatatttcacatgtgtcgttctcatttg Alignment from GeneWise GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG gccgtcctgtcataattctataataataccagatcctttttaccccacagGGTTTTGTAAGTGGTATTACAGGAATTCGTTTAAAGCCAATAAAAGgtgagggtcaccttgcctggtatatatttcacatgtgtcgttctcatttg #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATG-GCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGCGCATTAGGAT-AAAAGCACTAGTTGGTGGAGCCGTTggtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGCGCATTAGGATAAAAGCACTAGTTGGTGGAGCCGTTggtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGCGCATTAGGATAAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGCGCATTAGGATAAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATG-GCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGCGCATTAGGA-TAAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGCGCATTAGGATAAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGCGCATTAGGATAAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGCGCATTAGGATAAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc #### Vps13a_ID4114_9 --> 0 - 0 Original Alignment CTAATCCGATTAGATAATCTCTTTGCT-TACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaaccttgaaaacaagaacatgtctctcctttgttcagCTGACACGGTTAGACAACCTCTTTGCTCTACTGGA-TGTGAACTCTGAGATGTTCTATTTGAATGATTATGATGAATCATTGgttgggacttatttacatgtttttgcttttatattgtagaatacttaact Alignment from CESAR CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaaccttgaaaacaagaacatgtctctcctttgttcagCTGACACGGTTAGACAACCTCTTTGCTCTACTGGATGTGAACTCTGAGATGTTCTATTTGAATGATTATGATGAATCATTGgttgggacttatttacatgtttttgcttttatattgtagaatacttaact Alignment from Spaln_aa2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaaccttgaaaacaagaacatgtctctcctttgttcagCTGACACGGTTAGACAACCTCTTTGCTCTACTGGATGTGAACTCTGAGATGTTCTATTTGAATGATTATGATGAATCATTGgttgggacttatttacatgtttttgcttttatattgtagaatacttaact Alignment from Spaln_nt2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaaccttgaaaacaagaacatgtctctcctttgttcagCTGACACGGTTAGACAACCTCTTTGCTCTACTGGATGTGAACTCTGAGATGTTCTATTTGAATGATTATGATGAATCATTGgttgggacttatttacatgtttttgcttttatattgtagaatacttaact Alignment from Pairagon CTAATCCGATTAGATAATCTCTTTGCT-TACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaaccttgaaaacaagaacatgtctctcctttgttcagCTGACACGGTTAGACAACCTCTTTGCTCTACTGG-ATGTGAACTCTGAGATGTTCTATTTGAATGATTATGATGAATCATTGgttgggacttatttacatgtttttgcttttatattgtagaatacttaact Alignment from Exonerate_protein2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaaccttgaaaacaagaacatgtctctcctttgttcagCTGACACGGTTAGACAACCTCTTTGCTCTACTGGATGTGAACTCTGAGATGTTCTATTTGAATGATTATGATGAATCATTGgttgggacttatttacatgtttttgcttttatattgtagaatacttaact Alignment from Exonerate_coding2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaaccttgaaaacaagaacatgtctctcctttgttcagCTGACACGGTTAGACAACCTCTTTGCTCTACTGGATGTGAACTCTGAGATGTTCTATTTGAATGATTATGATGAATCATTGgttgggacttatttacatgtttttgcttttatattgtagaatacttaact Alignment from GeneWise CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaaccttgaaaacaagaacatgtctctcctttgttcagCTGACACGGTTAGACAACCTCTTTGCTCTACTGGATGTGAACTCTGAGATGTTCTATTTGAATGATTATGATGAATCATTGgttgggacttatttacatgtttttgcttttatattgtagaatacttaact #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCA-TGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagcccctactccctgcataaaaacctttctaaccccacccaccctcaggtAGCCTTAAACTTAAAATCCCACTGGAAAAACC-TTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTagtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagcccctactccctgcataaaaacctttctaaccccacccaccctcaggtAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTagtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from GeneWise TCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcaggtagCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGTGGGAGTGGC-ATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg tcctcatttatctgtgcaactaagatttcccattggccactctcttgcagccCTCTGTTCCTTTGGCTGTGGAAGTGGCCATCTGCATAA-TCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAggtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from CESAR ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg tcctcatttatctgtgcaactaagatttcccattggccactctcttgcagccCTCTGTTCCTTTGGCTGTGGAAGTGGCCATCTGCATAATCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAggtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Spaln_aa2Genome CTGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcatttatctgtgcaactaagatttcccattggccactctcttgca gCCCTCTGTTCCTTTGGCTGTGGAAGTGGCCATCTGCATAATCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Spaln_nt2Genome TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGC-ATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagatttcccattggccactctcttgcag---CCCTCTGTTCCTTTGGCTGTGGAAGTGGCCATCTGCAT-AATCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Pairagon TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGG-CATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagatttcccattggccactctcttgcag---CCCTCTGTTCCTTTGGCTGTGGAAGTGGCCATCTGCAT-AATCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Exonerate_protein2genome TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagatttcccattggccactctcttgCAGCCCTCTGTTCCTTTGGCTGTGGAAGTGGCCATCTGCATAATCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Exonerate_coding2genome TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagatttcccattggccactctcttgCAGCCCTCTGTTCCTTTGGCTGTGGAAGTGGCCATCTGCATAATCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from GeneWise TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagatttcccattggccactctcttgcagCC---CTCTGTTCCTTTGGCTGTGGAAGTGGCCATCTGCATAATCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat #### Wdr74_ID2314_4 --> 1 - 0 Original Alignment cACCCTTATCACA-TGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagaACTCTTATTACACTGTG-GGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from CESAR cACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagaACTCTTATTACACTGTGGGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Spaln_aa2Genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACACTGTGGGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Spaln_nt2Genome CACCCTTATCACATGTG-TGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACACTGTGGGATTC-TGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Pairagon CACCCTTATCACA-TGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACACTGTG-GGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Exonerate_protein2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACACTGTGGGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Exonerate_coding2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACACTGTGGGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from GeneWise CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACACTGTGGGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCT-CAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCCAGC-TAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCCAGCTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCCAGCTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCCAGCTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCCAGCTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCCAGCTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCCAGCTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCCAGCTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCA-ATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaataggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCACATGG-CTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatgacatcatattaattttttcagTTACACCGTTTTG Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaataggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCACATGGCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatacatgtgcctttgtggttttagTTACACCGTTTTG Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCACATGGCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatgacatcatattaattttttcagTTACACCGTTTTG Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCACATGGCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatgacatcatattaattttttcagTTACACCGTTTTG Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCACATGGCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatgacatcatattaattttttcagTTACACCGTTTTG Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCACATGGCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatgacatcatattaattttttcagTTACACCGTTTTG Alignment from Exonerate_coding2genome GGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaataGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCACATGGCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatgacatcatattaattttttcagTTACACCGTTTTG Alignment from GeneWise GGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaataGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCACATGGCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatgacatcatattaattttttcagTTACACCGTTTTG #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAG-AAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTATCCATCTGCAAGCAAAT-CATTTATCCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAaggtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTATCCATCTGCAAGCAAATCATTTATCCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAaggtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTATCCATCTGCAAGCAAATCATTTATCCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTATCCATCTGCAAGCAAATCATTTATCCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTATCCATCTGCAAGCAAATCATTTATCCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTATCCATCTGCAAGCAAATCATTTATCCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTATCCATCTGCAAGCAAATCATTTATCCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTATCCATCTGCAAGCAAATCATTTATCCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATC-CGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCCCGGATCCCGGCTGCAAA-AGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagaagaggggggtgtgcttcatggaaaaactggcattgtaagtcctt Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCCCGGATCCCGGCTGCAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagaagaggggggtgtgcttcatggaaaaactggcattgtaaagtgcc Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCCCGGATCCCGGCTGCAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaagtcctt Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCCCGGATCCCGGCTGCAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaagtcctt Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGAT-CCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCCCGGATCCCGGCTGCA-AAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaagtcctt Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCCCGGATCCCGGCTGCAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaagtcctt Alignment from Exonerate_coding2genome CAGAAGTGTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGAT-CCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctccCCTGCAGGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCCCGGATCCCGGCTGCA-AAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaagtcctt Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCCCGGATCCCGGCTGCAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaagtcctt #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAAC-AGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagggACAGCTAGTGGTTCTAACCAGTC-CACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagggACAGCTAGTGGTTCTAACCAGTCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACCAGTCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACCAGTCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACCAGTCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACCAGTCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACCAGTCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACCAGTCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTag ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagatGTTCCTGAAGAACAACCAAA-ACCTGGTGGCATTaggtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagatGTTCCTGAAGAACAACCAAAACCTGGTGGCATTaggtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagATGTTCCTGAAGAACAACCAAAACCTGGTGGCATTAGgtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagATGTTCCTGAAGAACAACCAAAACCTGGTGGCATTAGgtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagATGTTCCTGAAGAACAACCAAAACCTGGTGGCATTAGgtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Exonerate_protein2genome ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagatgttcctgaagaacaaccaaaacctggtggcattaggtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Exonerate_coding2genome ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagatgttcctgaagaacaaccaaaacctggtggcattaggtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from GeneWise ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagatgttcctgaagaacaaccaaaacctggtggcattaggtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAG-GATGCTGCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagagCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGCGATGCAG-CAAACTTAAGCCTTCAggtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagagCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGCGATGCAGCAAACTTAAGCCTTCAggtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCA- gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGCGATGCAGCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAG-GATGCTGCTAAACTTGAGCCCT gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGCGATGCAGC-AAACTTAAGCCTTcaggtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAG-GATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGCGATGCAGC-AAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGCGATGCAGCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGCGATGCAGCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGCGATGCAGCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACAC-CAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGTTACACCCAGTGCT-GGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGTTACACCCAGTGCTGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGTTACACCCAGTGCTGGCCACA---CCAACTACTAGCTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACC-AGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTG---CCAGCTTGGTTCTGGTGTTACACCCAGTGCT-GGCCACACCAACTACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACA-CCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTG---CCAGCTTGGTTCTGGTGTTACACCCAGTGCT-GGCCACACCAACTACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGTTACACCCAGTGCTGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGTTACACCCAGTGCTGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGTTACACCCAGTGCTGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta #### Zp1_ID3065_7 --> 1 - 1 Original Alignment gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTG-GAGCTGAGGATTGCCACGg tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCTCAGGCTGCCAAT-GAAGATTGCCATGggtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from CESAR gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCTCAGGCTGCCAATGAAGATTGCCATGggtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Spaln_aa2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCTCAGGCTGCCAATGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Spaln_nt2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCTCAGGCTGCCAATGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Pairagon GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCTCAGGCTGCCAATGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Exonerate_protein2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCTCAGGCTGCCAATGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Exonerate_coding2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCTCAGGCTGCCAATGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from GeneWise GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCTCAGGCTGCCAATGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta #### Zp1_ID3066_6 --> 0 - 2 Original Alignment GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAA-AAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAACAAGGGGCCAC-AGGTTCTATCACACATGACAGTGCCTTCcggtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from CESAR GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAACAAGGGGCCACAGGTTCTATCACACATGACAGTGCCTTCcggtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Spaln_aa2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAACAAGGGGCCACAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Spaln_nt2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAA-AAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAACAAGGGGCCACA-GGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Pairagon GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAA-AAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAACAAGGGGCCACA-GGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Exonerate_protein2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAACAAGGGGCCACAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Exonerate_coding2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAACAAGGGGCCACAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from GeneWise GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAACAAGGGGCCACAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCC-GTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTCGTCTTAC-AAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTCGTCTTACAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTCGTCTTACAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGC-CGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTCGTCTTA-CAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGA---------GGCTGGGTCTGGCCA------TATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGC-CGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTCGTCTTA-CAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGA---------GGCTGGGTCTGGCCATA------TCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTCGTCTTACAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTCGTCTTACAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTCGTCTTACAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata ####