#### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGC-ACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCCACGGCCTTCA-CTGGAAGGAATCCTTTGGCCTGGTACTTATCATTGCACCATGGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAggtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCCACGGCCTTCACTGGAAGGAATCCTTTGGCCTGGTACTTATCATTGCACCATGGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAggtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCCACGGCCTTCACTGGAAGGAATCCTTTGGCCTGGTACTTATCATTGCACCATGGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGC-ACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCCACGGCCTTCA-CTGGAAGGAATCCTTTGGCCTGGTACTTATCATTGCACCATGGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Pairagon CTCACCAAGCTGAG-CACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCCACGGCCTTCA-CTGGAAGGAATCCTTTGGCCTGGTACTTATCATTGCACCATGGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCCACGGCCTTCACTGGAAGGAATCCTTTGGCCTGGTACTTATCATTGCACCATGGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCCACGGCCTTCACTGGAAGGAATCCTTTGGCCTGGTACTTATCATTGCACCATGGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCCACGGCCTTCACTGGAAGGAATCCTTTGGCCTGGTACTTATCATTGCACCATGGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTG-CTACCCCAGTATCTGGACCAG ccttgaggagcacttaaacatcaatctcttgtgcttttcccctttcccaggaAACTGTGTGGTGCTAAAGAGATCTGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACCTC-GTATCTAGATCAAgtgggcctatattaggtgcttaatgtggcaaagcactttaaactaaaatc Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ccttgaggagcacttaaacatcaatctcttgtgcttttcccctttcccaggaAACTGTGTGGTGCTAAAGAGATCTGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACCTCGTATCTAGATCAAgtgggcctatattaggtgcttaatgtggcaaagcactttaaactaaaatc Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ccttgaggagcacttaaacatcaatctcttgtgcttttcccctttcccagGAAACTGTGTGGTGCTAAAGAGATCTGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACCTCGTATCTAGATCAAgtgggcctatattaggtgcttaatgtggcaaagcactttaaactaaaatc Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ccttgaggagcacttaaacatcaatctcttgtgcttttcccctttcccagGAAACTGTGTGGTGCTAAAGAGATCTGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACCTCGTATCTAGATCAAgtgggcctatattaggtgcttaatgtggcaaagcactttaaactaaaatc Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ccttgaggagcacttaaacatcaatctcttgtgcttttcccctttcccagGAAACTGTGTGGTGCTAAAGAGATCTGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACCTCGTATCTAGATCAAgtgggcctatattaggtgcttaatgtggcaaagcactttaaactaaaatc Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ccttgaggagcacttaaacatcaatctcttgtgcttttcccctttcccagGAAACTGTGTGGTGCTAAAGAGATCTGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACCTCGTATCTAGATCAAgtgggcctatattaggtgcttaatgtggcaaagcactttaaactaaaatc Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ccttgaggagcacttaaacatcaatctcttgtgcttttcccctttcccagGAAACTGTGTGGTGCTAAAGAGATCTGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACCTCGTATCTAGATCAAgtgggcctatattaggtgcttaatgtggcaaagcactttaaactaaaatc Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ccttgaggagcacttaaacatcaatctcttgtgcttttcccctttcccagGAAACTGTGTGGTGCTAAAGAGATCTGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACCTCGTATCTAGATCAAgtgggcctatattaggtgcttaatgtggcaaagcactttaaactaaaatc #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGC-AGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACCAGGGTAT-AAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGgcgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACCAGGGTATAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGgcgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACCAGGGTATAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC G agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACCAGGGTATAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactagA Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGC-AGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACCAGGGTAT-AAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACCAGGGTATAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACCAGGGTATAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACCAGGGTATAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTT-GCCCAGAAAGAAAAAGCAGCCATGGAAg actataattggctgagtgagcctttttcttttattttcttcccctttcagg---TGCTCCCGTGCAAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTCGCCCAGA-ACAAGAAGCAGCCATGAAAggtaaggcttgaaagtggcactggattttcccaactttcttttatgacttc Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg actataattggctgagtgagcctttttcttttattttcttcccctttcaggTGC---TCCCGTGCAAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTCGCCCAGAACAAGAAGCAGCCATGAAAggtaaggcttgaaagtggcactggattttcccaactttcttttatgactac Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCC---CGTGCAAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTCGCCCAGAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgacttc Alignment from Spaln_nt2Genome GTGCTC--GTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCCCGTGCAAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTCGCCCAGAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgacttc Alignment from Pairagon GTCCAGTGCT--CGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcag-----GTGCTCCCGTGCAAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTCGCCCAGAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgacttc Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCC---CGTGCAAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTCGCCCAGAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgacttc Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCC---CGTGCAAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTCGCCCAGAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgacttc Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCC---CGTGCAAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTCGCCCAGAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgacttc #### 2010012O05Rik_ID10003_2 --> 0 - 0 Original Alignment CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAA-GATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAACGATGCTATTT-GCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from CESAR CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAACGATGCTATTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Spaln_aa2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAACGATGCTATTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Spaln_nt2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAA-GATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAACGATGCTAT-TTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Pairagon CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAA-GATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAACGATGCTAT-TTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Exonerate_protein2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAACGATGCTATTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Exonerate_coding2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAACGATGCTATTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from GeneWise CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAACGATGCTATTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATCAGCCAG-AACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGCAACA-TATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from CESAR GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGCAACATATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Spaln_aa2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGCAACATATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Spaln_nt2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGCAACATATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Pairagon GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGCAACATATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGCAACATATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Exonerate_coding2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGCAACATATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from GeneWise GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGCAACATATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGT-GGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg gaaatctgtcaaggtgttttgtttagcacactcaattattattcatacagttACCCCAGTTATAGAGCAGGGGAATAAGAAGCCCCGTCGGCC-AAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGATCCAggtgacttgaatattgggggtaacagctgcgaaaatcactcaggccataaa Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg gaaatctgtcaaggtgttttgtttagcacactcaattattattcatacagttACCCCAGTTATAGAGCAGGGGAATAAGAAGCCCCGTCGGCCAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGATCCAggtgacttgaatattgggggtaacagctgcgaaaatcactcaggccataaa Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG gaaatctgtcaaggtgttttgtttagcacactcaattattattcatacagTTACCCCAGTTATAGAGCAGGGGAATAAGAAGCCCCGTCGGCCAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGATCCAGgtgacttgaatattgggggtaacagctgcgaaaatcactcaggccataaa Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG gaaatctgtcaaggtgttttgtttagcacactcaattattattcatacagTTACCCCAGTTATAGAGCAGGGGAATAAGAAGCCCCGTCGGCCAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGATCCAGgtgacttgaatattgggggtaacagctgcgaaaatcactcaggccataaa Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG gaaatctgtcaaggtgttttgtttagcacactcaattattattcatacagTTACCCCAGTTATAGAGCAGGGGAATAAGAAGCCCCGTCGGCCAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGATCCAGgtgacttgaatattgggggtaacagctgcgaaaatcactcaggccataaa Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG gaaatctgtcaaggtgttttgtttagcacactcaattattattcatacagTTACCCCAGTTATAGAGCAGGGGAATAAGAAGCCCCGTCGGCCAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGATCCAGgtgacttgaatattgggggtaacagctgcgaaaatcactcaggccataaa Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG gaaatctgtcaaggtgttttgtttagcacactcaattattattcatacagTTACCCCAGTTATAGAGCAGGGGAATAAGAAGCCCCGTCGGCCAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGATCCAGgtgacttgaatattgggggtaacagctgcgaaaatcactcaggccataaa Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG gaaatctgtcaaggtgttttgtttagcacactcaattattattcatacagTTACCCCAGTTATAGAGCAGGGGAATAAGAAGCCCCGTCGGCCAAGATGGAAAGAGTCCCCCGAGAATGAACCGGCTAGAAAGAAGAGAAGCAGGCATATGACTAAAATCTTGGACCCTGATCCAGgtgacttgaatattgggggtaacagctgcgaaaatcactcaggccataaa #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTC-AGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagaaTCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGCAGGATGC-AGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAagtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagaaTCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGCAGGATGCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAagtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGCAGGATGCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGT-CAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGCAGGATG-CAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACC---TGAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGT-CAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGCAGGATG-CAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACC---TGAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGCAGGATGCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGCAGGATGCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from GeneWise ----------------------------------TCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagACTCCCAGTCATGCCTGCTTCCTCTCTTCCAGAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGCAGGATGCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca #### Abcc2_ID8838_22 --> 0 - 1 Original Alignment GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATC-TTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCCTTCTATGTAC-GAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAggtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from CESAR GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCCTTCTATGTACGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAggtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Spaln_aa2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCCTTCTATGTACGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Spaln_nt2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCCTTCTATGTACGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Pairagon GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCAT-CTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCCTTCTATGTA-CGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Exonerate_protein2genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCCTTCTATGTACGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCCTTCTATGTACGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata #### Acsl5_ID11602_7 --> 0 - 0 Original Alignment AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAACGAGAACT-CAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from CESAR AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAACGAGAACTCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Spaln_aa2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAACGAGAACTCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Spaln_nt2Genome AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAACGAGAAC-TCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Pairagon AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAACGAGAAC-TCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Exonerate_protein2genome ttatccagctttaatgattctttttggtatgccctttccctcactcccagaatataggcaaacgagaactcaagaaaccagtggtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Exonerate_coding2genome ttatccagctttaatgattctttttggtatgccctttccctcactcccagaatataggcaaacgagaactcaagaaaccagtggtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from GeneWise ttatccagctttaatgattctttttggtatgccctttccctcactcccagaatataggcaaacgagaactcaagaaaccagtggtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATG-AACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctaggtCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGCAACTACTTTT-AGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctaggtCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGCAACTACTTTTAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGCAACTACTTTTAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGCAACTACTTTTAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATG-AACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGCAACTACTTTT-AGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGCAACTACTTTTAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGCAACTACTTTTAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGCAACTACTTTTAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAA-GCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTT-AGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga #### Actn3_ID691_19 --> 0 - 0 Original Alignment GACCGG AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGCATGG-GCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from CESAR GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaaaggacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGCATGGGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Spaln_aa2Genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGCATGGGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Spaln_nt2Genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGCATGGGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Pairagon GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGCATGGGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Exonerate_protein2genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGCATGGGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Exonerate_coding2genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGCATGGGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from GeneWise GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGCATGGGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAG-AACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGCAATA-CATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGCAATACATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGCAATACATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGCAATACATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGCAATACATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGCAATACATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGCAATACATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGCAATACATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAG-GAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAACGAGAAGCTAG-CCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from CESAR GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAACGAGAAGCTAGCCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Spaln_aa2Genome CAGAAAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcaggtcagAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAACGAGAAGCTAGCCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Spaln_nt2Genome GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAG-GAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAACGAGAAGCTAG-CCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Pairagon GTCAGAAA-------------GCTGGTACCCAGCCGTGACCAGACACTGCAG-GAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGC----------CCATGACCAGACATTCCAACGAGAAGCTAG-CCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Exonerate_protein2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAACGAGAAGCTAGCCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Exonerate_coding2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAACGAGAAGCTAGCCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from GeneWise CAGAAAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcaggtcagAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAACGAGAAGCTAGCCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGA-CTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCCTAC-TCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCCTACTCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCCTACTCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCCTACTCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCCTACTCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCCTACTCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCCTACTCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCCTACTCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCT-CGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCCGCA-GGCAGCTTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCCGCAGGCAGCTTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCCGCAGGCAGCTTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCCGCAGGCAGCTTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCCGCAGGCAGCTTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCCGCAGGCAGCTTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCCGCAGGCAGCTTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCCGCAGGCAGCTTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGT-GTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTCTTCC-GGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTCTTCCGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTCTTCCGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTCTTCCGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTCTTCCGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTCTTCCGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTCTTCCGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTCTTCCGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac #### Actn3_ID701_9 --> 0 - 0 Original Alignment GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAAC-CAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCCAGGAAAATG-GGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from CESAR GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCCAGGAAAATGGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Spaln_aa2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCCAGGAAAATGGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Spaln_nt2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACC-AGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCCAGGAAAATG-GGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Pairagon GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAA-CCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCCAGGAAAATG-GGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Exonerate_protein2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCCAGGAAAATGGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Exonerate_coding2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCCAGGAAAATGGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from GeneWise GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCCAGGAAAATGGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTG-CTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagagGCTGCATCCAAACAGGGCTTGCTTCCTCTGGT-CCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTaggtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagagGCTGCATCCAAACAGGGCTTGCTTCCTCTGGTCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTaggtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGCTTCCTCTGGTCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGCTTCCTCTGGTCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTT-CTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGCTTCCTCTGGT-CCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGCTTCCTCTGGTCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGCTTCCTCTGGTCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGCTTCCTCTGGTCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTC-CGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCCGTTTTGCCA-TCAGGACATCTCTGTAGAAggtaagctgatgcaaaatgcatagttgggccagatcattttcttcttttct Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCCGTTTTGCCATCAGGACATCTCTGTAGAAggtaagctgatgcaaaatgcatagttgggccagatcattcacctcccactt Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCCGTTTTGCCATCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattttcttcttttct Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCCGTTTTGCCATCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattttcttcttttct Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCT-CCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCCGTTTTGCCA-TCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattttcttcttttct Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCCGTTTTGCCATCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattttcttcttttct Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCCGTTTTGCCATCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattttcttcttttct Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCCGTTTTGCCATCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattttcttcttttct #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAG-ATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcaggtGCAAGACTGCCTAGGCCTGATAAAGGCAAGCATGT-CTTTCACAAAATTGCTAATGTAAATAACGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAggtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcaggtGCAAGACTGCCTAGGCCTGATAAAGGCAAGCATGTCTTTCACAAAATTGCTAATGTAAATAACGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAggtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGCATGTCTTTCACAAAATTGCTAATGTAAATAACGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGCATGTCTTTCACAAAATTGCTAATGTAAATAACGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGCATGTCTTTCACAAAATTGCTAATGTAAATAACGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGCATGTCTTTCACAAAATTGCTAATGTAAATAACGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGCATGTCTTTCACAAAATTGCTAATGTAAATAACGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGCATGTCTTTCACAAAATTGCTAATGTAAATAACGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac #### Actr1a_ID9872_8 --> 0 - 1 Original Alignment ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTG-CTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCCTAGTGT-TGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAggtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from CESAR ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCCTAGTGTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAggtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Spaln_aa2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCCTAGTGTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Spaln_nt2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCCTAGTGTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Pairagon ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTG-CTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCCTAGTG-TTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Exonerate_protein2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCCTAGTGTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Exonerate_coding2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCCTAGTGTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from GeneWise ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCCTAGTGTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTG-GGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttaggcATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGCGGAAGTG-GGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from CESAR gcATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttaggcATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGCGGAAGTGGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Spaln_aa2Genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGCGGAAGTGGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Spaln_nt2Genome GCATGGACTTACCC------GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGCGGAAGTGGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Pairagon GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTG-GGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGCGGAAGTG-GGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Exonerate_protein2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGCGGAAGTGGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Exonerate_coding2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGCGGAAGTGGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from GeneWise CCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttaggcatggactcagactcagcagCATTTGAGATGGATATCTACAGGAACTTGCGGAAGTGGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG-CGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagacTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACCAGA-ATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagacTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACCAGAATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACCAGAATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACCAGAATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACCAGAATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACCAGAATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACCAGAATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACCAGAATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGT-TCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcaggGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCATCTCTC-GGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from CESAR gGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcaggGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCATCTCTCGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Spaln_aa2Genome -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCATCTCTCGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCATCTCTCGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Pairagon GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCATCTCTCGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Exonerate_protein2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCATCTCTCGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Exonerate_coding2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCATCTCTCGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from GeneWise -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCATCTCTCGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTC-CGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagcCACAGTCACTTCCCGGCAGC-CAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from CESAR aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagcCACAGTCACTTCCCGGCAGCCAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Spaln_aa2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCCGGCAGCCAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Spaln_nt2Genome ACACAGCCCCTTCC-GGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCCGGCAGC-CAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Pairagon ACACAGCCCCTT-CCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCCGGCAGC-CAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCCGGCAGCCAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Exonerate_coding2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCCGGCAGCCAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from GeneWise ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCCGGCAGCCAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment GTgt gGGCACACACGGGTACATGGCCCCCGAA-GTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtaggtacccacacattcacttcatgttgtaccacatcactgacaggGGCACACATGGGTACATAGCTCCCAAGCGTACTCC-AAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCTCTTCAAATTGTTGCGAgggtaagatggaacatgaggggggagccctgcacatctggctgtcagaggca Alignment from CESAR GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtaagaacccacacattcacttcatgttgtaccacatcactgacaggGGCACACATGGGTACATAGCTCCCAAGCGTACTCCAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCTCTTCAAATTGTTGCGAgggtaagatggaacatgaggggggagccctgcacatctggctgtcagaggca Alignment from Spaln_aa2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaggtacccacacattcacttcatgttgtaccacatcactgacagGGGCACACATGGGTACATAGCTCCCAAGCGTACTCCAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCTCTTCAAATTGTTGCGAGGgtaagatggaacatgaggggggagccctgcacatctggctgtcagaggca Alignment from Spaln_nt2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAA-GTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaggtacccacacattcacttcatgttgtaccacatcactgacagGGGCACACATGGGTACATAGCTCCCAAGCGTACTCCA-AAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCTCTTCAAATTGTTGCGAGGgtaagatggaacatgaggggggagccctgcacatctggctgtcagaggca Alignment from Pairagon GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAG------------GGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaggtacccacacattcacttcatgttgtaccacatcactgacagGGGCACACATGGGTACATAGCTCCC------------AAGCGTACTCCAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCTCTTCAAATTGTTGCGAGGgtaagatggaacatgaggggggagccctgcacatctggctgtcagaggca Alignment from Exonerate_protein2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaggtacccacacattcacttcatgttgtaccacatcactgacagGGGCACACATGGGTACATAGCTCCCAAGCGTACTCCAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCTCTTCAAATTGTTGCGAGGgtaagatggaacatgaggggggagccctgcacatctggctgtcagaggca Alignment from Exonerate_coding2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaggtacccacacattcacttcatgttgtaccacatcactgacagGGGCACACATGGGTACATAGCTCCCAAGCGTACTCCAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCTCTTCAAATTGTTGCGAGGgtaagatggaacatgaggggggagccctgcacatctggctgtcagaggca Alignment from GeneWise GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaggtacccacacattcacttcatgttgtaccacatcactgacagGGGCACACATGGGTACATAGCTCCCAAGCGTACTCCAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCTCTTCAAATTGTTGCGAGGgtaagatggaacatgaggggggagccctgcacatctggctgtcagaggca #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAA-CATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCTCCTAGATGTACCATGGCC-TGTGAGAATCTCCGACTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGgtgtaagaacccacacattcacttcagttgtcacttctctgcctataggGGC Alignment from CESAR CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCTCCTAGATGTACCATGGCCTGTGAGAATCTCCGACTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGgtgtaagaacccacacattcacttcatgttgtaccacatcactgacaggGGC Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCTCCTAGATGTACCATGGCCTGTGAGAATCTCCGACTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcagttgtcacttctctgcctatagGGGC Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCTCCTAGATGTACCATGGCCTGTGAGAATCTCCGACTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcagttgtcacttctctgcctatagGGGC Alignment from Pairagon CCAGCCAACATTCTCCTGGATG-AACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCTCCTAGATGTACCATGGCC-TGTGAGAATCTCCGACTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcagttgtcacttctctgcctatagGGGC Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCTCCTAGATGTACCATGGCCTGTGAGAATCTCCGACTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcagttgtcacttctctgcctatagGGGC Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCTCCTAGATGTACCATGGCCTGTGAGAATCTCCGACTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcagttgtcacttctctgcctatagGGGC Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCTCCTAGATGTACCATGGCCTGTGAGAATCTCCGACTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcagttgtcacttctctgcctatagGGGC #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGAC-ATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaagttagtttagagaatggtatcttcttcacattttacaggtGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATCATGCGTC-CTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtcagttagtttagagaatggtatcttcttcacattttacaggtGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATCATGCGTCCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATCATGCGTCCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGA-CATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATCATGCG-TCCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGA-CATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATCATGCG-TCCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATCATGCGTCCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATCATGCGTCCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATCATGCGTCCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCATCGA-ATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat agcacaccagcatcactataagagtagtacctccccttgtgcctctccagCTGACCATGAATGATTTTAGTGTACATCAACATCATCGGAC-TGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAAGCGGATGTAGGCAAGatgttggcagtggaccagtagaggtggccagcgaaggagccaggctttgcat Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat agcacaccagcatcactataagagtagtacctccccttgtgcctctccagCTGACCATGAATGATTTTAGTGTACATCAACATCATCGGACTGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAAGCGGATGTAGGCAAGatgttggcagtggaccagtagaggtggccagcgaaggagccaggctttgcat Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcatcactataagagtagtacctccccttgtgcctctccagCTGACCATGAATGATTTTAGTGTACATCAACATCATCGGACTGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAAGCGGATGTAGGCAAGATgttggcagtggaccagtagaggtggccagcgaaggagccaggctttgcat Alignment from Spaln_nt2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcatcactataagagtagtacctccccttgtgcctctccagCTGACCATGAATGATTTTAGTGTACATCAACATCATCGGACTGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAAGCGGATGTAGGCAAGATgttggcagtggaccagtagaggtggccagcgaaggagccaggctttgcat Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCATCGA-ATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcatcactataagagtagtacctccccttgtgcctctccagCTGACCATGAATGATTTTAGTGTACATCAACATCATCGGAC-TGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAAGCGGATGTAGGCAAGATgttggcagtggaccagtagaggtggccagcgaaggagccaggctttgcat Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcatcactataagagtagtacctccccttgtgcctctccagCTGACCATGAATGATTTTAGTGTACATCAACATCATCGGACTGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAAGCGGATGTAGGCAAGATgttggcagtggaccagtagaggtggccagcgaaggagccaggctttgcat Alignment from Exonerate_coding2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcatcactataagagtagtacctccccttgtgcctctccagCTGACCATGAATGATTTTAGTGTACATCAACATCATCGGACTGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAAGCGGATGTAGGCAAGATgttggcagtggaccagtagaggtggccagcgaaggagccaggctttgcat Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcatcactataagagtagtacctccccttgtgcctctccagCTGACCATGAATGATTTTAGTGTACATCAACATCATCGGACTGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAAGCGGATGTAGGCAAGATgttggcagtggaccagtagaggtggccagcgaaggagccaggctttgcat #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGGTTCTGCCAGTGGAAGAAT-GTTGAGCTCAACATCCAC gaattacagtctggtacctctactagtgagttgctcctctgcccgcgcagtGATCAGTTCACACATTTCTGTCAATGGAAGAATCATTG-GCTCAACATTCATgtacggagcagtattccatgaatgcaactctaagtgcaatatcggtgggc Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC gaattacagtctggtacctctactagtgagttgctcctctgcccgcgcagtGATCAGTTCACACATTTCTGTCAATGGAAGAATCATTGGCTCAACATTCATgtacggagcagtattccatgaatgcaactctaagtgcaatatcggtgggc Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC gaattacagtctggtacctctactagtgagttgctcctctgcccgcgcagTGATCAGTTCACACATTTCTGTCAATGGAAGAATCATTGGCTCAACATTCATgtacggagcagtattccatgaatgcaactctaagtgcaatatcggtgggc Alignment from Spaln_nt2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC gaattacagtctggtacctctactagtgagttgctcctctgcccgcgcagTGATCAGTTCACACATTTCTGTCAATGGAAGAATCATTGGCTCAACATTCATgtacggagcagtattccatgaatgcaactctaagtgcaatatcggtgggc Alignment from Pairagon TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC gaattacagtctggtacctctactagtgagttgctcctctgcccgcgcagTGATCAGTTCACACATTTCTGTCAATGGAAGAATCATTGGCTCAACATTCATgtacggagcagtattccatgaatgcaactctaagtgcaatatcggtgggc Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC gaattacagtctggtacctctactagtgagttgctcctctgcccgcgcagTGATCAGTTCACACATTTCTGTCAATGGAAGAATCATTGGCTCAACATTCATgtacggagcagtattccatgaatgcaactctaagtgcaatatcggtgggc Alignment from Exonerate_coding2genome gaattacagtctggtacctctactagtgagttgctcctctgcccgcgcagtgatcagttcacacatttctgtcaatggaagaatcattggctcaacattcatgtacggagcagtattccatgaatgcaactctaagtgcaatatcggtgggc Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC gaattacagtctggtacctctactagtgagttgctcctctgcccgcgcagTGATCAGTTCACACATTTCTGTCAATGGAAGAATCATTGGCTCAACATTCATgtacggagcagtattccatgaatgcaactctaagtgcaatatcggtgggc #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATTTGTCAGAAC-CTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACATTTGTCAGAAGCCTCCGAA-GGATTTATTCCAAAAGTTTATAGAGaggtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from CESAR CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACATTTGTCAGAAGCCTCCGAAGGATTTATTCCAAAAGTTTATAGAGaggtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACATTTGTCAGAAGCCTCCGAAGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTCAGAA-CCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACATTTGTCAGAAGCCTCCGA-AGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Pairagon CCATACATTGAGGAGATTTGTCAGAA-CCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACATTTGTCAGAAGCCTCCGA-AGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACATTTGTCAGAAGCCTCCGAAGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Exonerate_coding2genome ATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAGCCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG AGACCGAGGCTTGCCAGATTGATTCACCAGCTATTATTTTCTTTTGGCAGCCTTACATTGAGGACATTTGTCAGAAGCCTCCGAAGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from GeneWise CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACATTTGTCAGAAGCCTCCGAAGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAG-CAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTC-AGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGC-AGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCT-CAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Pairagon CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Exonerate_coding2genome tattccattttgtttgtttatgttcataccatgtcccttccatttcttagcccttctcccaaaatgctgcagagcatgtgcaggcccaccttgtgaaaaagccaggtccctcagatctgtttcaggtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGC-AGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCCAGCCGAGAGA-CTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGC---CGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCCAGCCGAGAGAC---TTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCCAGCCGAGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGC-AGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCCAGCCGAGAGA-CTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCG-CAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCCAGCCGAGAGA-CTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCCAGCCGAGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCCAGCCGAGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCCAGCCGAGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCC-AGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCCAGCTCGC-TGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCCAGCTCGCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCCAGCTCGCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCCAGCTCGCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCCAGCTCGCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCCAGCTCGCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCCAGCTCGCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCCAGCTCGCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAAT-GCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATCGCTGGGCAGA-CTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTC------TACAATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTggtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATCGCTGGGCAGACTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTggtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTATGAT---GATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATCGCTGGGCAGACTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAAT-GCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATCGCTGGGCAGA-CTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGT------TTTGCAAAATTCTATCACTCGTTTCT------ACAATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAAT-GCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATCGCTGGGCAGA-CTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGT------TTTGCAAAATTCTATCACTCGTTTCT------ACAATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATCGCTGGGCAGACTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATCGCTGGGCAGACTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from GeneWise TCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttaggaagCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATCGCTGGGCAGACTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg #### Aldh3b2_ID243_9 --> 0 - 1 Original Alignment GTGGTGAATCAGATGTTGGAACGCACCAGCAGC-GGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTCGGGGGTT-TGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTggtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from CESAR GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTCGGGGGTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTggtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Spaln_aa2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTCGGGGGTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Spaln_nt2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTCGGGGGTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Pairagon GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTCGGGGGTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Exonerate_protein2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTCGGGGGTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Exonerate_coding2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTCGGGGGTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from GeneWise GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTCGGGGGTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAG-CAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtattttaatttgtgtattcaaaggaGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCCAAAGCCTGC-TGAGGCGGGCATACAGGCAGAGCAGgtgagttgtgaaatagttagtatgacccttagtgcctcaggcccaagggg Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtattttaatttgtgtattcaaaggaGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCCAAAGCCTGCTGAGGCGGGCATACAGGCAGAGCAGgtgagttgtgaaatagttagtatgacccttagtgcctcaggcccaagggg Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtattttaatttgtgtattcaaagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCCAAAGCCTGCTGAGGCGGGCATACAGGCAGAGCAGgtgagttgtgaaatagttagtatgacccttagtgcctcaggcccaagggg Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGC-AGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtattttaatttgtgtattcaaagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCCAAAGCCTGC-TGAGGCGGGCATACAGGCAGAGCAGgtgagttgtgaaatagttagtatgacccttagtgcctcaggcccaagggg Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAG-CAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtattttaatttgtgtattcaaagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCCAAAGCCTGC-TGAGGCGGGCATACAGGCAGAGCAGgtgagttgtgaaatagttagtatgacccttagtgcctcaggcccaagggg Alignment from Exonerate_protein2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtattttaatttgtgtattcaaagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCCAAAGCCTGCTGAGGCGGGCATACAGGCAGAGCAGgtgagttgtgaaatagttagtatgacccttagtgcctcaggcccaagggg Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtattttaatttgtgtattcaaagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCCAAAGCCTGCTGAGGCGGGCATACAGGCAGAGCAGgtgagttgtgaaatagttagtatgacccttagtgcctcaggcccaagggg Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtattttaatttgtgtattcaaagGAGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCCAAAGCCTGCTGAGGCGGGCATACAGGCAGAGCAGgtgagttgtgaaatagttagtatgacccttagtgcctcaggcccaagggg #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCC-AACTCCAGTTCTGCCATTTCTGCTTCAg atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCCAACTCCA-TCTGGCAATTTCTGCTTCAggtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCCAACTCCATCTGGCAATTTCTGCTTCAggtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCCAACTCCATCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCC-AACTCCAGTTCTGCCA-TTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCCAACTCCA--TCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGT-CCCCAACTCCAGTTCTGCC-ATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCCAACTCCA--TCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_protein2genome ATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCCAACTCCATCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_coding2genome ATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCCAACTCCATCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCCAACTCCATCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTC-CTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcaggaGGAAAGACTCCATTCCAATCCTTCCTTGG-TATGGCCCAGCAACATTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcaggaGGAAAGACTCCATTCCAATCCTTCCTTGGTATGGCCCAGCAACATTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCCTTGGTATGGCCCAGCAACATTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCCTTGGTATGGCCCAGCAACATTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCCTTGGTATGGCCCAGCAACATTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCCTTGGTATGGCCCAGCAACATTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCCTTGGTATGGCCCAGCAACATTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCCTTGGTATGGCCCAGCAACATTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCGGTG-AGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAG---GACAGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCCAGGA-TGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCCAGGATGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCCAGGATGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACA---GA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCCAGGATGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGG---ACAGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCCAGGATGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCCAGGATGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Exonerate_coding2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCCAGGATGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGAGAA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCCAGGATGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGACGTG-CCTTTGTCTGTGCAGTCACTCag ggtggccctcttcccgtggttccttgtcggctctctctttttttttttaggGAAAAGGCAGATTTACCCCTTGT-TGTTCAGTCACTTaggtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from CESAR gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag ggtggccctcttcccgtggttccttgtcggctctctctttttttttttaggGAAAAGGCAGATTTACCCCTTGTTGTTCAGTCACTTaggtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from Spaln_aa2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagGGAAAAGGCAGATTTACCCCTTGTTGTTCAGTCACTTAGgtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from Spaln_nt2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagGGAAAAGGCAGATTTACCCCTTGTTGTTCAGTCACTTAGgtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from Pairagon GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAGGTTTC--------------------------------------------- ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagGGAAAAGGCAGATTTACCCCTTGTTGTTCAGTCACTTAGGTTTCAATTTATTGCAAAGAGGGTGGGTGGGAGTCCCGTAGAGCTAACTA Alignment from Exonerate_protein2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagGGAAAAGGCAGATTTACCCCTTGTTGTTCAGTCACTTAGgtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from Exonerate_coding2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAGGGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ggtGGCCCTCTTCCCGTGGTTCCTTGTCGGCTCTCTCTTTTTTTTTTTAGGGAAAAGGCAGATTTACCCCTTGTTGTTCAGTCACTTAGgtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from GeneWise ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagggaaaaggcagatttaccccttgttgttcagtcacttaggtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGG-TCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGCTCTCGCC-GCATTCATTCATGGGATCTACCTTCAATCCCaggtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGCTCTCGCCGCATTCATTCATGGGATCTACCTTCAATCCCaggtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGCTCTCGCCGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGG-TCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCC------CACGGCTGCCTCAGCCAGGCTCTCGCC-GCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGG-TCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCC------CACGGCTGCCTCAGCCAGGCTCTCGCC-GCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGCTCTCGCCGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGCTCTCGCCGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGCTCTCGCCGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga #### Best1_ID2637_2 --> 1 - 1 Original Alignment aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTG-TACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ttacagctggaacaatagtctagagtctttttgtattctctccaccccagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGCTACTGTG-TAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTGggtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from CESAR aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ttacagctggaacaatagtctagagtctttttgtattctctccaccccagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGCTACTGTGTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTGggtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Spaln_aa2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGCTACTGTGTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Spaln_nt2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGCTACTGTGTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Pairagon AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTG-TACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGCTACTGTG-TAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Exonerate_protein2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGCTACTGTGTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Exonerate_coding2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGCTACTGTGTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from GeneWise AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGCTACTGTGTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAACTCACAC-CACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCCATGGA------GACCACATTTCACACCATCAGCCAggtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACAC-CACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCCATGGAGAC------CACATTTCACACCATCAGCCAggtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACAC-CACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACcCATGGAGAC------CACATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCCATGGAGACCAC-----ATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Pairagon GTTAATATCCGACAAAGGGATAACTCAC----------ACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCCATGGAGACCAC---------------ATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Exonerate_protein2genome GTTAATATCCGACAAAGGGATAACTCACAC-CACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCCATGGA------GACCACATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Exonerate_coding2genome GTTAATATCCGACAAAGGGATAACTCACAC-CACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCCATGGA------GACCACATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from GeneWise ATCAGCCAGGTCAG GG---------GGAgtctaggatcacaaccagcttcttctgtacctccaggtcaatacatgtcaaagggataactcacacccatggagaccacatttcacaccatcagccaggtactaaaattggctattaggagtttggagaaaatacatttggagagtcc #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGG-CCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagttccagcactctcccccctgtctcatctctgttccgaccctatccagagGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCGCTGAATG-GGAGGAGGAGCGGGAGCCGGACGCTGGTGATggtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagttccagcactctcccccctgtctcatctctgttccgaccctatccagagGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCGCTGAATGGGAGGAGGAGCGGGAGCCGGACGCTGGTGATggtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCGCTGAATGGGAGGAGGAGCGGGAGCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCC-CTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCCGCTGAATGG-GAGGAGGAGCGGGAGCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCC-CTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCCGCTGAATGG-GAGGAGGAGCGGGAGCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCGCTGAATGGGAGGAGGAGCGGGAGCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCGCTGAATGGGAGGAGGAGCGGGAGCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCGCTGAATGGGAGGAGGAGCGGGAGCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag #### Btaf1_ID7227_10 --> 0 - 0 Original Alignment ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCG-TTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGACA-ATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from CESAR ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGACAATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Spaln_aa2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGACAATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Spaln_nt2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGACAATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Pairagon ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCG-TTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGACA-ATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Exonerate_protein2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGACAATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Exonerate_coding2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGACAATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from GeneWise ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGACAATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc #### Cabp2_ID288_3 --> 0 - 1 Original Alignment GATCGAGAGCTG-AGACCAGAAGAGATCGAAg gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGAG---CAGAC-AGAAAAAATTGAAggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from CESAR GATCGAGAGCTGAGACCAGAAGAGATCGAAg gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGAG---CAGACAGAAAAAATTGAAggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Spaln_aa2Genome GATCGAGAGCTGAGACCAGAAGAGATCGAAG gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGAG---CAGACAGAAAAAATTGAAGgtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Spaln_nt2Genome GATCGAGAGCTGAGACCAGAAGAGATCGAAG gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGAGCAGA---CAGAAAAAATTGAAGgtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Pairagon GATCGAGAGCTGAGACCAGAAGAGATCGAAG gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGAGCAGA---CAGAAAAAATTGAAGgtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Exonerate_protein2genome gttgttatactaaagattggaggggctccagaaccttgctttctttccaggaccgggagcagacagaaaaaattgaaggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Exonerate_coding2genome gttgttatactaaagattggaggggctccagaaccttgctttctttccaggaccgggagcagacagaaaaaattgaaggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from GeneWise gttgttatactaaagattggaggggctccagaaccttgctttctttccaggaccgggagcagacagaaaaaattgaaggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTT-CGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttaggtGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTCAAAG-TGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttaggtGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTCAAAGTGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTCAAAGTGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTCAAAGTGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTCAAAGTGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTCAAAGTGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTCAAAGTGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTCAAAGTGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAG---GACAGGGATGGACGGATCACGGTG-GCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTACGTGGAGT-GCGCCAGGCTGTTCCAGCTCTGCAAGGG------GTAGACGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACggtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from CESAR TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACg gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTACGTGGAGTGCGCCAGGCTGTTCCAGCTCTGCAAGGG------GTAGACGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACggtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Spaln_aa2Genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTACGTGGAGTGCGCCAGGCTGTTCCAGCTCTGCAAGGG------GTAGACGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGgtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Spaln_nt2Genome TTTGACAAGGA---CAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACG gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTACGTGGAGTGCGCCAGGCTGTTCCAGCTCTGCAAGGGG------TAGACGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGgtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Pairagon TTTGACA---AGGACAGGGATGGACGGATCACGGTG-GCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCAT---AGACTTTGACG gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTACGTGGAG-TGCGCCAGGCTGTTCCAGCTCTGCAAGGGG------TAGACGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGgtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Exonerate_protein2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTACGTGGAGTGCGCCAGGCTGTTCCAGCTCTGCAAGGG------GTAGACGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGgtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Exonerate_coding2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTACGTGGAGTGCGCCAGGCTGTTCCAGCTCTGCAAGGG------GTAGACGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAgaatttgacggtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from GeneWise TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGAC---------GAGTTTGTAATGATGCTATCTACAGGC gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTACGTGGAGTGCGCCAGGCTGTTCCAGCTCTGCAAGGG------GTAGACGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGGTAAGAAACCCTACATCCCCATCATGCATACATGTataatgtgaaaatct #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACAGACCTGGAT-GGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagggTTTTCTAAACTACTAGACCGAGGCCTAGACCGGTGTTGTTA-CTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGAT-GGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagggTTTTCTAAACTACTAGACCGAGGCCTAGACCGGTGTTGTTA-CTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagGGTTTTCTAAACTACTAGACCGAGGCCTAGACCGGTGTTGTTACTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGAT-GGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagGGTTTTCTAAACTACTAGACCGAGGCCTAGACCGGTGTTGTTA-CTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGACCTGGA-TGGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagGGTTTTCTAAACTACTAGACCGAGGCCTAGACCGGTGTTGTTA-CTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Exonerate_protein2genome cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagggttttctaaactactagaccgaggcctagaccggtgttgttactttgatctctttagggtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Exonerate_coding2genome cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagggttttctaaactactagaccgaggcctagaccggtgttgttactttgatctctttagggtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from GeneWise cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagggttttctaaactactagaccgaggcctagaccggtgttgttactttgatctctttagggtagctgagtactccaccccacttgactagctatccgggggtgctgctac #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAGCTG-GGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTACGGGCTGG-GGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTACGGGCTGGGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTACGGGCTGGGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCTG-GGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTACGGGCTGG-GGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Pairagon CGAGATGGCAACGGGAA-------GCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTACGGGCTGG-------GGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTACGGGCTGGGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Exonerate_coding2genome tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagcgagatggaaatgggaagttacgggctggggaattcaacatcctatggaaccatatccgaaattatctggtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTACGGGCTGGGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt #### Capn1_ID1369_7 --> 0 - 2 Original Alignment GTAACTTACCAGGGCCAGCGGGTG-AACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACC-TATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAAGGTCCTTGGAGTGACaggtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from CESAR GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAAGGTCCTTGGAGTGACaggtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Spaln_aa2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Spaln_nt2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Pairagon GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Exonerate_protein2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Exonerate_coding2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from GeneWise GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAAC-CCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCAAACCCCCCAAT-CATTGTAGATGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAggtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from CESAR GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCAAACCCCCCAATCATTGTAGATGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAggtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCAAACCCCCCAATCATTGTAGATGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCAAACCCCCCAATCATTGTAGATGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Pairagon GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCAAACCCCCCAATCATTGTAGATGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCAAACCCCCCAATCATTGTAGATGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Exonerate_coding2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCAAACCCCCCAATCATTGTAGATGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCAAACCCCCCAATCATTGTAGATGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt #### Carns1_ID386_6 --> 2 - 0 Original Alignment CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGG-ATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAggtgagttgtaatccctccacccctccttgtgcaggaGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCC-GGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from CESAR CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAggtgggttgtaatccctccacccctccttgtgcaggaGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Spaln_aa2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Spaln_nt2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Pairagon CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Exonerate_protein2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Exonerate_coding2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from GeneWise CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGCATCCGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCT-AAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacaggaAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAAGCTG-GAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacaggaAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAAGCTGGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAAGCTGGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGT---CTGCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAAGCTGGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCT-AAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGT---CTGCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAAGCTG-GAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAAGCTGGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAAGCTGGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAAGCTGGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAG-GTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg caaatatagacatggaggacaggacaggcacagtgcttgttttaacacaggcTGCCCTGGGGCAGAGCGTCACCT-GTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg caaatatagacatggaggacaggacaggcacagtgcttgttttaacacaggcTGCCCTGGGGCAGAGCGTCACCTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGCGTCACCTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGCGTCACCTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Pairagon GCTGCCCTGGGGCAGAG-GTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGCGTCACC-TGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGCGTCACCTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGCGTCACCTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGCGTCACCTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca #### Catsper1_ID930_7 --> 2 - 2 Original Alignment CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTC-ATCCAGTACTTCATCTTCCTCaa CCCAAggtaggataacctaaggctccagcgctctctgtttgcccatttagctGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAAT-CTTTATCTTCCTCaagtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from CESAR CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa CCCAAggtaaggtaacctaaggctccagcgctctctgtttgcccatttagctGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCaagtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from Spaln_aa2Genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtaggataacctaaggctccagcgctctctgtttgcccatttagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from Spaln_nt2Genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGT-CATCCAGTACTTCATCTTCCTCAA CCCAAGgtaggataacctaaggctccagcgctctctgtttgcccatttagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAAT-CTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from Pairagon CCCAAGG--------------------------------------------CGCCTGGTACATCATACCGATCCTCATGATTTACATTG-TCATCCAGTACTTCATCTTCCTCAA CCCAAGGTAGGATAACCTAAGGCTCCAGCGCTCTCTGTTTGCCCATTTAGCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAAT-CTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from Exonerate_protein2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtaggataacctaaggctccagcgctctctgtttgcccatttagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from Exonerate_coding2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtaggataacctaaggctccagcgctctctgtttgcccatttagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from GeneWise CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtaggataacctaaggctccagcgctctctgtttgcccatttagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTG-CTCAAAGGCCTAGAGAAAGTGAAGCTGGAG attcctatactaaccatcccatttaggcttgtatcttgttttctttgaagcCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTGCTGCCTCAAAGGCC-GGAGAAAGTGAAGCTGGAAgtaattaccacattgggtggtagataacttcctgatggtgctgctcaaag Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG attcctatactaaccatcccatttaggcttgtatcttgttttctttgaagcCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTGCTGCCTCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaattaccacattgggtggtagataacttcctgatggtgctgctcaaag Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAG ATAACTTCCAGATGGCGTTGCTCAAAG attcctatactaaccatcccatttaggcttgtatcttgttttctttgaagCCTAGTGATTGCAGCTCTAGTAGataacttcctgatggtgctgcctcaaaggccggagaaagtgaagctggaagtaattaccacattgggtggtagATAACTTCCTGATGGTGCTGCTCAAAG Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTG GTAGATAACTTCCAGATGGCGTTGCTC attcctatactaaccatcccatttaggcttgtatcttgttttctttgaagCCTAGTGATTGCAGCTCTAgtagataacttcctgatggtgctgcctcaaaggccggagaaagtgaagctggaagtaattaccacattgggtggtag----ATAACTTCCTGATGGTGCTGCTC Alignment from Pairagon CCTGGTGATTGCTGTCC-------------------------------------------------------------------------TGGTAGATAACTTCCAGATGGCGTTGCTCAAAG attcctatactaaccatcccatttaggcttgtatcttgttttctttgaagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTGCTGCCTCAAAGGCCGGAGAAAGTGAAGCTGGAAGTAATTACCACATTGGGTGGTAGATAACTTCCTGATGGTGCTGCTCAAAG Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG attcctatactaaccatcccatttaggcttgtatcttgttttctttgaagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTGCTGCCTCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaattaccacattgggtggtagataacttcctgatggtgctgctcaaag Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG attcctatactaaccatcccatttaggcttgtatcttgttttctttgaagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTGCTGCCTCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaattaccacattgggtggtagataacttcctgatggtgctgctcaaag Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG attcctatactaaccatcccatttaggcttgtatcttgttttctttgaagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTGCTGCCTCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaattaccacattgggtggtagataacttcctgatggtgctgctcaaag #### Catsper1_ID932_9 --> 0 - 1 Original Alignment CAAGCTGCCCGGGTC-CATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCCACGAAA-GTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCAggtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from CESAR CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCCACGAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCAggtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Spaln_aa2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCCACGAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Spaln_nt2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCCACGAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Pairagon CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCCACGAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Exonerate_protein2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCCACGAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Exonerate_coding2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCCACGAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from GeneWise ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagcaagctccccgagtcccacgaaagttgttgggtgactctctgacagaactcaataaggcaggtaagtattggacttcaatttaatctgccctccaattagtccctagagta #### Cbwd1_ID5353_14 --> 0 - 1 Original Alignment GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGAT-GCGGAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtcgccctaagttgacaactgaccttcttttccctgtcctccagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATCGCAGAAA-AGCATGTCAGCTAGTTTTCATTggtacctaacactaatgtactactgggttgctgtgtctaactgtaatcact Alignment from CESAR GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtcgccctaagttgacaactgaccttcttttccctgtcctccagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATCGCAGAAAAGCATGTCAGCTAGTTTTCATTggtacctaacactaatgtactactgggttgctgtgtctaactgtaatcact Alignment from Spaln_aa2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtcgccctaagttgacaactgaccttcttttccctgtcctccagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATCGCAGAAAAGCATGTCAGCTAGTTTTCATTGgtacctaacactaatgtactactgggttgctgtgtctaactgtaatcact Alignment from Spaln_nt2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtcgccctaagttgacaactgaccttcttttccctgtcctccagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATCGCAGAAAAGCATGTCAGCTAGTTTTCATTGgtacctaacactaatgtactactgggttgctgtgtctaactgtaatcact Alignment from Pairagon GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtcgccctaagttgacaactgaccttcttttccctgtcctccagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATCGCAGAAAAGCATGTCAGCTAGTTTTCATTGgtacctaacactaatgtactactgggttgctgtgtctaactgtaatcact Alignment from Exonerate_protein2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtcgccctaagttgacaactgaccttcttttccctgtcctccagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATCGCAGAAAAGCATGTCAGCTAGTTTTCATTGgtacctaacactaatgtactactgggttgctgtgtctaactgtaatcact Alignment from Exonerate_coding2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtcgccctaagttgacaactgaccttcttttccctgtcctccagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATCGCAGAAAAGCATGTCAGCTAGTTTTCATTGgtacctaacactaatgtactactgggttgctgtgtctaactgtaatcact Alignment from GeneWise GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtcgccctaagttgacaactgaccttcttttccctgtcctccagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATCGCAGAAAAGCATGTCAGCTAGTTTTCATTGgtacctaacactaatgtactactgggttgctgtgtctaactgtaatcact #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAG-GTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg ctcagctgtctctttgtttggagcttttacactgaaattgttaatttcaggAAGGGCAGCTGGTTGGCAGACAAGCGTGAGAA-GCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTCGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGCTGCCTGAAGGCAGGGAGGTTGATGGGACAggtaaggttaaccgtctaacagtcagaatacccctggctgagatttaatgc Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg ctcagctgtctctttgtttggagcttttacactgaaattgttaatttcaggAAGGGCAGCTGGTTGGCAGACAAGCGTGAGAAGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTCGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGCTGCCTGAAGGCAGGGAGGTTGATGGGACAggtaaggttaaccgtctaacagtcagaatacccctggctgagatttaatgc Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ctcagctgtctctttgtttggagcttttacactgaaattgttaatttcagGAAGGGCAGCTGGTTGGCAGACAAGCGTGAGAAGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTCGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGCTGCCTGAAGGCAGGGAGGTTGATGGGACAGgtaaggttaaccgtctaacagtcagaatacccctggctgagatttaatgc Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ctcagctgtctctttgtttggagcttttacactgaaattgttaatttcagGAAGGGCAGCTGGTTGGCAGACAAGCGTGAGAAGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTCGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGCTGCCTGAAGGCAGGGAGGTTGATGGGACAGgtaaggttaaccgtctaacagtcagaatacccctggctgagatttaatgc Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ctcagctgtctctttgtttggagcttttacactgaaattgttaatttcagGAAGGGCAGCTGGTTGGCAGACAAGCGTGAGAAGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTCGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGCTGCCTGAAGGCAGGGAGGTTGATGGGACAGgtaaggttaaccgtctaacagtcagaatacccctggctgagatttaatgc Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ctcagctgtctctttgtttggagcttttacactgaaattgttaatttcagGAAGGGCAGCTGGTTGGCAGACAAGCGTGAGAAGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTCGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGCTGCCTGAAGGCAGGGAGGTTGATGGGACAGgtaaggttaaccgtctaacagtcagaatacccctggctgagatttaatgc Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ctcagctgtctctttgtttggagcttttacactgaaattgttaatttcagGAAGGGCAGCTGGTTGGCAGACAAGCGTGAGAAGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTCGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGCTGCCTGAAGGCAGGGAGGTTGATGGGACAGgtaaggttaaccgtctaacagtcagaatacccctggctgagatttaatgc Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ctcagctgtctctttgtttggagcttttacactgaaattgttaatttcagGAAGGGCAGCTGGTTGGCAGACAAGCGTGAGAAGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTCGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGCTGCCTGAAGGCAGGGAGGTTGATGGGACAGgtaaggttaaccgtctaacagtcagaatacccctggctgagatttaatgc #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGAC-CATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCCTCTGC-CCGTGAGCAGCCAGAGTACctgtgagaacacttagggtcaggttaaggtaatatgactctctcgtttaggG Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCCTCTGCCCGTGAGCAGCCAGAGTACctgtgagaacacttagggtcaggttaagcctggccttctccttgccccaggG Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCCTCTGCCCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaaggtaatatgactctctcgtttagGG Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGTGAC--CCCTCTGC-CCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaaggtaatatgactctctcgtttagGG Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGA-----------GCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGTGACCCCTCTGCC--------------CGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaaggtaatatgactctctcgtttagGG Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCCTCTGCCCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaaggtaatatgactctctcgtttagGG Alignment from Exonerate_coding2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCCTCTGCCCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaaggtaatatgactctctcgtttagGG Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCCTCTGCCCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaaggtaatatgactctctcgtttagGG #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTC-CAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCCAGGGAGAAC-TGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACAACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCCAGGGAGAACTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACAACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCCAGGGAGAACTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACAACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCCAGGGAGAACTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACAACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCCAGGGAGAACTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACAACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCCAGGGAGAACTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACAACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCCAGGGAGAACTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACAACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCCAGGGAGAACTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACAACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgctatgtcctccaggcttccctgtgcccacaggTACCAGCATCTGCGAGC-ACGTCTAGAAGCTGAGTTGCAAGCAACATCTGCCAGTAAGGAGCAGGCGCTGATGGAGCTCAAGGTACGAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtctgtctgcccaacacaaaagactactgccctgtgcactggtagttcat Alignment from CESAR gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgctatgtcctccaggcttccctgtgcccacaggTACCAGCATCTGCGAGCACGTCTAGAAGCTGAGTTGCAAGCAACATCTGCCAGTAAGGAGCAGGCGCTGATGGAGCTCAAGGTACGAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtctgtctgcccaacacaaaagactactgccctgtgcactggtagttcat Alignment from Spaln_aa2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgctatgtcctccaggcttccctgtgcccacagGTACCAGCATCTGCGAGCACGTCTAGAAGCTGAGTTGCAAGCAACATCTGCCAGTAAGGAGCAGGCGCTGATGGAGCTCAAGGTACGAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtctgtctgcccaacacaaaagactactgccctgtgcactggtagttcat Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgctatgtcctccaggcttccctgtgcccacagGTACCAGCATCTGCGAGCACGTCTAGAAGCTGAGTTGCAAGCAACATCTGCCAGTAAGGAGCAGGCGCTGATGGAGCTCAAGGTACGAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtctgtctgcccaacacaaaagactactgccctgtgcactggtagttcat Alignment from Pairagon GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgctatgtcctccaggcttccctgtgcccacagGTACCAGCATCTGCGAGCA-CGTCTAGAAGCTGAGTTGCAAGCAACATCTGCCAGTAAGGAGCAGGCGCTGATGGAGCTCAAGGTACGAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtctgtctgcccaacacaaaagactactgccctgtgcactggtagttcat Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgctatgtcctccaggcttccctgtgcccacagGTACCAGCATCTGCGAGCACGTCTAGAAGCTGAGTTGCAAGCAACATCTGCCAGTAAGGAGCAGGCGCTGATGGAGCTCAAGGTACGAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtctgtctgcccaacacaaaagactactgccctgtgcactggtagttcat Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgctatgtcctccaggcttccctgtgcccacagGTACCAGCATCTGCGAGCACGTCTAGAAGCTGAGTTGCAAGCAACATCTGCCAGTAAGGAGCAGGCGCTGATGGAGCTCAAGGTACGAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtctgtctgcccaacacaaaagactactgccctgtgcactggtagttcat Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtaataaggtctggttgctatgtcctccaggcttccctgtgcccacagGTACCAGCATCTGCGAGCACGTCTAGAAGCTGAGTTGCAAGCAACATCTGCCAGTAAGGAGCAGGCGCTGATGGAGCTCAAGGTACGAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtctgtctgcccaacacaaaagactactgccctgtgcactggtagttcat #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTA-CAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagcgTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CCATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagcgTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA--CCATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAAC--CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAAC--CATAT------GGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAACCATA--------TGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAA----CTACAGATGCTTCAGGCACAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAACCATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAA----CTACAGATGCTTCAGGCACAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAACCATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAAC--CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca #### Ccdc88b_ID1838_11 --> 0 - 0 Original Alignment GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGG-GAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactaaagagtctcaattcctctatatgagggtctccatattacagGAGAAGCAGGTCCTCTCCGAAGCTGTAGAGGCTTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCGCAGCAAGACTGCATGAAACCCAGAGGCGAAAATC-TCTGCTGCGCACACGATTGGGGGAGGCCCATGTGgtaaagtgtattgcatgttgcaagtggggaccatgatttgactttacttt Alignment from CESAR GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactaaagagtctcaattcctctatatgagggtctccatattacagGAGAAGCAGGTCCTCTCCGAAGCTGTAGAGGCTTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCGCAGCAAGACTGCATGAAACCCAGAGGCGAAAATCTCTGCTGCGCACACGATTGGGGGAGGCCCATGTGgtaaagtgtattgcatgttgcaagtggggaccatgatttgactttacttt Alignment from Spaln_aa2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactaaagagtctcaattcctctatatgagggtctccatattacagGAGAAGCAGGTCCTCTCCGAAGCTGTAGAGGCTTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCGCAGCAAGACTGCATGAAACCCAGAGGCGAAAATCTCTGCTGCGCACACGATTGGGGGAGGCCCATGTGgtaaagtgtattgcatgttgcaagtggggaccatgatttgactttacttt Alignment from Spaln_nt2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGG-GAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactaaagagtctcaattcctctatatgagggtctccatattacagGAGAAGCAGGTCCTCTCCGAAGCTGTAGAGGCTTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCGCAGCAAGACTGCATGAAACCCAGAGGCGAAAATCT-CTGCTGCGCACACGATTGGGGGAGGCCCATGTGgtaaagtgtattgcatgttgcaagtggggaccatgatttgactttacttt Alignment from Pairagon GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactaaagagtctcaattcctctatatgagggtctccatattacagGAGAAGCAGGTCCTCTCCGAAGCTGTAGAGGCTTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCGCAGCAAGACTGCATGAAACCCAGAGGCGAAAATCTCTGCTGCGCACACGATTGGGGGAGGCCCATGTGgtaaagtgtattgcatgttgcaagtggggaccatgatttgactttacttt Alignment from Exonerate_protein2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactaaagagtctcaattcctctatatgagggtctccatattacagGAGAAGCAGGTCCTCTCCGAAGCTGTAGAGGCTTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCGCAGCAAGACTGCATGAAACCCAGAGGCGAAAATCTCTGCTGCGCACACGATTGGGGGAGGCCCATGTGgtaaagtgtattgcatgttgcaagtggggaccatgatttgactttacttt Alignment from Exonerate_coding2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactaaagagtctcaattcctctatatgagggtctccatattacagGAGAAGCAGGTCCTCTCCGAAGCTGTAGAGGCTTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCGCAGCAAGACTGCATGAAACCCAGAGGCGAAAATCTCTGCTGCGCACACGATTGGGGGAGGCCCATGTGgtaaagtgtattgcatgttgcaagtggggaccatgatttgactttacttt Alignment from GeneWise GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactaaagagtctcaattcctctatatgagggtctccatattacagGAGAAGCAGGTCCTCTCCGAAGCTGTAGAGGCTTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCGCAGCAAGACTGCATGAAACCCAGAGGCGAAAATCTCTGCTGCGCACACGATTGGGGGAGGCCCATGTGgtaaagtgtattgcatgttgcaagtggggaccatgatttgactttacttt #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCAC-TTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCCTGC-GCTCCCTGAGGCTCCTGCCAATGCA------GAGGGTGTCTCCCACCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGgtgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCCTGCGCTCCCTGAGGCTCCTGCCAAT------GCAGAGGGTGTCTCCCACCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGgtgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCCTGCGCTCCCTGAGGCTCCTGCCAAT------GCAGAGGGTGTCTCCCACCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCCTGCGCTCCCTGAGGCTCCTGCCAA------TGCAGAGGGTGTCTCCCACCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCCTGCGCTCCCTGAGGCTCCTGCCAA------TGCAGAGGGTGTCTCCCACCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCCTGCGCTCCCTGAGGCTCCTGCCAAT------GCAGAGGGTGTCTCCCACCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Exonerate_coding2genome ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagcggttggctgaactgttgcttgagagggagccagaccaccctgcgctccctgaggctcctgccaatgcagagggtgtctcccaccatttagctctgcaattgaccaatgctaaggcccaactgagacgcctcaggagggaggtgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCCTGCGCTCCCTGAGGCTCCTGCCAATGCA------GAGGGTGTCTCCCACCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct #### Ccs_ID661_7 --> 0 - 2 Original Alignment GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGC-CGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCCGGGGAG-CCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGaggtaggacatataacccccaacggagccagcttctctttcttttggccaca Alignment from CESAR GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCCGGGGAGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGaggtaggacatataacccccaacggagccagactttggctcacccacatcca Alignment from Spaln_aa2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCCGGGGAGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagcttctctttcttttggccaca Alignment from Spaln_nt2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCCGGGGAGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagcttctctttcttttggccaca Alignment from Pairagon ----------------------------------------------GAAGGTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGGTTGG--------------------------------------------- GCAGATACACAAGGCTGATGGTACTGACAACTTCTTTCAATATGCATAAGGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCCGGGGAGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGGTAGGACATATAACCCCCAACGGAGCCAGCTTCTCTTTCTTTTGGCCACA Alignment from Exonerate_protein2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCCGGGGAGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagcttctctttcttttggccaca Alignment from Exonerate_coding2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCCGGGGAGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagcttctctttcttttggccaca Alignment from GeneWise GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCCGGGGAGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagcttctctttcttttggccaca #### Cd5_ID2994_4 --> 2 - 1 Original Alignment GAGCCTGATCTGCCTAg agCCCCAGAGAACGACA-CCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtgagtgacagttatatctttcatttttaacagaaCCCCAGAGAACAGCTCCCTCCACCCA-TACCACTCCACCCACCACTGTACCTGAACCCACAggtgagatggtgtacaccaagaagacaaagtagagtatgacgttgatataa Alignment from CESAR GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtaagagacagttatatctttcatttttaacagaaCCCCAGAGAACAGCTCCCTCCACCCATACCACTCCACCCACCACTGTACCTGAACCCACAggtgagatggtgtacaccaagaagacaaagtagagtatgacgttgatataa Alignment from Spaln_aa2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagtgacagttatatctttcatttttaacagAACCCCAGAGAACAGCTCCCTCCACCCATACCACTCCACCCACCACTGTACCTGAACCCACAGgtgagatggtgtacaccaagaagacaaagtagagtatgacgttgatataa Alignment from Spaln_nt2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACC-TCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagtgacagttatatctttcatttttaacagAACCCCAGAGAACAGCTCCCTCCACCCA-TACCACTCCACCCACCACTGTACCTGAACCCACAGgtgagatggtgtacaccaagaagacaaagtagagtatgacgttgatataa Alignment from Pairagon GAGCCTGATCTGCCTAG AGCCCCAGAGAAC-GACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagtgacagttatatctttcatttttaacagAACCCCAGAGAACAGCTCCCTCCACCCAT-ACCACTCCACCCACCACTGTACCTGAACCCACAGgtgagatggtgtacaccaagaagacaaagtagagtatgacgttgatataa Alignment from Exonerate_protein2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagtgacagttatatctttcatttttaacagAACCCCAGAGAACAGCTCCCTCCACCCATACCACTCCACCCACCACTGTACCTGAACCCACAGgtgagatggtgtacaccaagaagacaaagtagagtatgacgttgatataa Alignment from Exonerate_coding2genome GAGCCTGATCTGCCTAGAGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCA GAGCCTGAGCTGCCTAGGTGAGTGACAGTTATATCTTTCATTTTTAACAGAACCCCAGAGAACAGCTCCCTCCACCCataccactccacccaccactgtacctgaacccacaggtgagatggtgtacaccaagaagacaaagtagagtatgacgttgatataa Alignment from GeneWise GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagtgacagttatatctttcatttttaacagAACCCCAGAGAACAGCTCCCTCCACCCATACCACTCCACCCACCACTGTACCTGAACCCACAGgtgagatggtgtacaccaagaagacaaagtagagtatgacgttgatataa #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGCGGAAGTG-CCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctggccccctgggcctctct Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGCGGAAGTGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctcagcccctcttaccttcc Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGCGGAAGTGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctggccccctgggcctctct Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGCGGAAGTGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctggccccctgggcctctct Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGCGGAAGTGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctggccccctgggcctctct Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGCGGAAGTGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctggccccctgggcctctct Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGCGGAAGTGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctggccccctgggcctctct Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG-------------------------------------------------- ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGCGGAAGTGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGGTGAGGTGGCACAAAAATGCAAAATCTAGCCTGGCCCCCTGGGCCTCTCT #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCAC-TACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATTCC-GGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ggtggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATTCCGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATTCCGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCA-CTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATTCC-GGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCA-CTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATTCC-GGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATTCCGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATTCCGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from GeneWise --------------------------------------------------ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG GTTGGCACAAAAATGCAAAATCTAGCCTCAGCCCCTCTTACCTTCCGCAGACAACCTGTCTCCGGGAAGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATTCCGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCC-TGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagaGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCTCCCTGCCTAC-CCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagaGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCTCCCTGCCTACCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCTCCCTGCCTACCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCTCCCTGCCTACCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGT---CTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCTC---CCTGCCTACCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCTCCCTGCCTACCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCTCCCTGCCTACCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCTCCCTGCCTACCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAA-GTACAGGTTCTTCAGGAGAAACTGGCAg tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagagCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGCGTTCAGG-TCTTCAGGAGAAACTGACAggtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagagCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGCGTTCAGGTCTTCAGGAGAAACTGACAggtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGCGTTCAGGTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGCGTTCAGGTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAA-GTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGCGTTCAGG-TCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGCGTTCAGGTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGCGTTCAGGTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGCGTTCAGGTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAA-GAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAGACCC-ACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTACATGCCTGCAGCCAAgggtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAGACCCACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTACATGCCTGCAGCCAAgggtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAGACCCACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAGACCCACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAGACCCACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAGACCCACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAGACCCACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAGACCCACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg #### Cdc42bpg_ID1590_20 --> 1 - 1 Original Alignment cCGCCTGCAGGAGGCTGAGAAGCAAAGT-CAGGCCCTGCAG---CAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagcCGCCTGCAGGAAGCTGAGACACAAAGTCGAGGCAC-CCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGggtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from CESAR cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAG---GCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagcCGCCTGCAGGAAGCTGAGACACAAAGTCGAGGCACCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGggtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Spaln_aa2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAG---GCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTCGAGGCACCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Spaln_nt2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTC-AGGC--CCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTCGAGGCACCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Pairagon CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGG---CCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTCGAGGCACCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Exonerate_protein2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTCGAGGCACCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Exonerate_coding2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTCGAGGCACCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from GeneWise CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAG---GAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTCGAGGCACCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAAT-TCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataaacataaatcctgtcctgactccactagctggttttctttgcagAAAGACTTTGCTAAAGACCCAGGCAATCTCAGCTG-GGGTCCAAGGTCTGGAGCGGAAGCGGAGCTTAGACCAGAGGGCCGCCGCAGTCTGCGCATGGGCgtgggttctataaccaaccggaatagaactaggtgggatttctacattga Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataaacataaatcctgtcctgactccactagctggttttctttgcagAAAGACTTTGCTAAAGACCCAGGCAATCTCAGCTGGGGTCCAAGGTCTGGAGCGGAAGCGGAGCTTAGACCAGAGGGCCGCCGCAGTCTGCGCATGGGCgtgggttctataaccaaccggaatagaactaggtgggatttctacattga Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataaacataaatcctgtcctgactccactagctggttttctttgcagAAAGACTTTGCTAAAGACCCAGGCAATCTCAGCTGGGGTCCAAGGTCTGGAGCGGAAGCGGAGCTTAGACCAGAGGGCCGCCGCAGTCTGCGCATGGGCgtgggttctataaccaaccggaatagaactaggtgggatttctacattga Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataaacataaatcctgtcctgactccactagctggttttctttgcagAAAGACTTTGCTAAAGACCCAGGCAATCTCAGCTGGGGTCCAAGGTCTGGAGCGGAAGCGGAGCTTAGACCAGAGGGCCGCCGCAGTCTGCGCATGGGCgtgggttctataaccaaccggaatagaactaggtgggatttctacattga Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataaacataaatcctgtcctgactccactagctggttttctttgcagAAAGACTTTGCTAAAGACCCAGGCAATCTCAGCTGGGGTCCAAGGTCTGGAGCGGAAGCGGAGCTTAGACCAGAGGGCCGCCGCAGTCTGCGCATGGGCgtgggttctataaccaaccggaatagaactaggtgggatttctacattga Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataaacataaatcctgtcctgactccactagctggttttctttgcagAAAGACTTTGCTAAAGACCCAGGCAATCTCAGCTGGGGTCCAAGGTCTGGAGCGGAAGCGGAGCTTAGACCAGAGGGCCGCCGCAGTCTGCGCATGGGCgtgggttctataaccaaccggaatagaactaggtgggatttctacattga Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataaacataaatcctgtcctgactccactagctggttttctttgcagAAAGACTTTGCTAAAGACCCAGGCAATCTCAGCTGGGGTCCAAGGTCTGGAGCGGAAGCGGAGCTTAGACCAGAGGGCCGCCGCAGTCTGCGCATGGGCgtgggttctataaccaaccggaatagaactaggtgggatttctacattga Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataaacataaatcctgtcctgactccactagctggttttctttgcagAAAGACTTTGCTAAAGACCCAGGCAATCTCAGCTGGGGTCCAAGGTCTGGAGCGGAAGCGGAGCTTAGACCAGAGGGCCGCCGCAGTCTGCGCATGGGCgtgggttctataaccaaccggaatagaactaggtgggatttctacattga #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTC-TCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctgtctggaggtgccatcttctaacaggGACCCCCAGTTTCTCAGCGA-TCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtgagtagaccgggtgatatagcctctccacacatgcatgagcttgtgtc Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctgtctggaggtgccatcttctaacaggGACCCCCAGTTTCTCAGCGATCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtgagtagaccgggtgatatagcctctccacacatgcatgagcttgtgtc Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctgtctggaggtgccatcttctaacagGGACCCCCAGTTTCTCAGCGATCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtgagtagaccgggtgatatagcctctccacacatgcatgagcttgtgtc Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctgtctggaggtgccatcttctaacagGGACCCCCAGTTTCTCAGCGATCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtgagtagaccgggtgatatagcctctccacacatgcatgagcttgtgtc Alignment from Pairagon GGACCCCCAG-TTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctgtctggaggtgccatcttctaacagGGACCCCCAGTTTCTCAGCGA-TCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtgagtagaccgggtgatatagcctctccacacatgcatgagcttgtgtc Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctgtctggaggtgccatcttctaacagGGACCCCCAGTTTCTCAGCGATCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtgagtagaccgggtgatatagcctctccacacatgcatgagcttgtgtc Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctgtctggaggtgccatcttctaacagGGACCCCCAGTTTCTCAGCGATCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtgagtagaccgggtgatatagcctctccacacatgcatgagcttgtgtc Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctgtctggaggtgccatcttctaacagGGACCCCCAGTTTCTCAGCGATCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtgagtagaccgggtgatatagcctctccacacatgcatgagcttgtgtc #### Cdc42bpg_ID1601_31 --> 2 - 0 Original Alignment gtTACACAGCACCCTACCTAACAGTGTTCAGTGAAAAC-GCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgtgcagtactatacactcccaacaagcctttcctcataggtTACACAGCGCCCTACCTAACTGTGTTCAGTGAAAACCACCCTTG-TGTGTTTGACGTGAGGAGAGCAGAATGGGTCCAGACTGTACCACTCAAGAAGgtaagggttagtgccggttgtcaaattggtacattgagtggggacatgtc Alignment from CESAR gtTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgtgcagtactatacactcccaacaagcctttcctcataggtTACACAGCGCCCTACCTAACTGTGTTCAGTGAAAACCACCCTTGTGTGTTTGACGTGAGGAGAGCAGAATGGGTCCAGACTGTACCACTCAAGAAGgtaagggttagtgccggttgtcaaattggtacattgagtgggtctcttgc Alignment from Spaln_aa2Genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgtgcagtactatacactcccaacaagcctttcctcatagGTTACACAGCGCCCTACCTAACTGTGTTCAGTGAAAACCACCCTTGTGTGTTTGACGTGAGGAGAGCAGAATGGGTCCAGACTGTACCACTCAAGAAGgtaagggttagtgccggttgtcaaattggtacattgagtggggacatgtc Alignment from Spaln_nt2Genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgtgcagtactatacactcccaacaagcctttcctcatagGTTACACAGCGCCCTACCTAACTGTGTTCAGTGAAAACCACCCTTGTGTGTTTGACGTGAGGAGAGCAGAATGGGTCCAGACTGTACCACTCAAGAAGgtaagggttagtgccggttgtcaaattggtacattgagtggggacatgtc Alignment from Pairagon GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgtgcagtactatacactcccaacaagcctttcctcatagGTTACACAGCGCCCTACCTAACTGTGTTCAGTGAAAACCACCCTTGTGTGTTTGACGTGAGGAGAGCAGAATGGGTCCAGACTGTACCACTCAAGAAGgtaagggttagtgccggttgtcaaattggtacattgagtggggacatgtc Alignment from Exonerate_protein2genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgtgcagtactatacactcccaacaagcctttcctcatagGTTACACAGCGCCCTACCTAACTGTGTTCAGTGAAAACCACCCTTGTGTGTTTGACGTGAGGAGAGCAGAATGGGTCCAGACTGTACCACTCAAGAAGgtaagggttagtgccggttgtcaaattggtacattgagtggggacatgtc Alignment from Exonerate_coding2genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgtgcagtactatacactcccaacaagcctttcctcatagGTTACACAGCGCCCTACCTAACTGTGTTCAGTGAAAACCACCCTTGTGTGTTTGACGTGAGGAGAGCAGAATGGGTCCAGACTGTACCACTCAAGAAGgtaagggttagtgccggttgtcaaattggtacattgagtggggacatgtc Alignment from GeneWise GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgtgcagtactatacactcccaacaagcctttcctcatagGTTACACAGCGCCCTACCTAACTGTGTTCAGTGAAAACCACCCTTGTGTGTTTGACGTGAGGAGAGCAGAATGGGTCCAGACTGTACCACTCAAGAAGgtaagggttagtgccggttgtcaaattggtacattgagtggggacatgtc #### Cdc42bpg_ID1602_32 --> 0 - 1 Original Alignment GTGAGACCCCTG-AATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg cggttgtcaaattggtacattgagtgggtctcttgctttctccgtagaagGTGAGACCCCTCCAATCCAG-AGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAggtaagagtacacaaccccaatctgcccttacagctataagtgaacagcta Alignment from CESAR GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg cggttgtcaaattggtacattgagtgggtctcttgctttctccgtagaagGTGAGACCCCTCCAATCCAGAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAggtaagagtacacaaccccaatctgcccttacagctataagtgaacagcta Alignment from Spaln_aa2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG cggttgtcaaattggtacattgagtgggtctcttgctttctccgtagaagGTGAGACCCCTCCAATCCAGAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtaagagtacacaaccccaatctgcccttacagctataagtgaacagcta Alignment from Spaln_nt2Genome GTGAGACCCCTG-AATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG cggttgtcaaattggtacattgagtgggtctcttgctttctccgtagaagGTGAGACCCCTCCAATCCAG-AGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtaagagtacacaaccccaatctgcccttacagctataagtgaacagcta Alignment from Pairagon GTGAGACCCCT-GAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG cggttgtcaaattggtacattgagtgggtctcttgctttctccgtagaagGTGAGACCCCTCCAATCCAG-AGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtaagagtacacaaccccaatctgcccttacagctataagtgaacagcta Alignment from Exonerate_protein2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG cggttgtcaaattggtacattgagtgggtctcttgctttctccgtagaagGTGAGACCCCTCCAATCCAGAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtaagagtacacaaccccaatctgcccttacagctataagtgaacagcta Alignment from Exonerate_coding2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG cggttgtcaaattggtacattgagtgggtctcttgctttctccgtagaagGTGAGACCCCTCCAATCCAGAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtaagagtacacaaccccaatctgcccttacagctataagtgaacagcta Alignment from GeneWise ---GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG cggttgtcaaattggtacattgagtgggtctcttgctttctccgtagAAGGTGAGACCCCTCCAATCCAGAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACCTACCTCAGAAACCCACTGGCAGgtaagagtacacaaccccaatctgcccttacagctataagtgaacagcta #### Cdk2ap2_ID298_2 --> 2 - 0 Original Alignment ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGAC-TTTGGTCCGCCCTCCATGGGGTATGTACAG agatctaaaagtctgtgatgagcccctcgtgaatgtctttcatatttcagctGGTAGTGTCCCATTGCCATCGGGCTCGGTACCAGGGGCTGCTGCACCTTTCAGACCA---TTTAATGACCTTTGGTC-ACCCACCATGGGTTATGTACAGgtgagtttgaccaagggcttactcaaggatggagggacaaggcccctatt Alignment from CESAR ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG agatctaaaagtctgtgatgagcccctcgtgaatgtctttcatatttcagctGGTAGTGTCCCATTGCCATCGGGCTCGGTACCAGGGGCTGCTGCACCTTTCAGACCA---TTTAATGACCTTTGGTCACCCACCATGGGTTATGTACAGgtgagtttgaccaagggcttactcaaggatggagggacaaggcccctatt Alignment from Spaln_aa2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG agatctaaaagtctgtgatgagcccctcgtgaatgtctttcatatttcagCTGGTAGTGTCCCATTGCCATCGGGCTCGGTACCAGGGGCTGCTGCACCTTTCAGACCA---TTTAATGACCTTTGGTCACCCACCATGGGTTATGTACAGgtgagtttgaccaagggcttactcaaggatggagggacaaggcccctatt Alignment from Spaln_nt2Genome CGGG-AGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG agatctaaaagtctgtgatgagcccctcgtgaatgtctttcatatttcagCTGGTAGTGTCCCATTGCCATCGGGCTCGGTACCAGGGGCTGCTGCACCTTTCAGACC---ATTTAATGACCTTTGGTCACCCACCATGGGTTATGTACAGgtgagtttgaccaagggcttactcaaggatggagggacaaggcccctatt Alignment from Pairagon CCCTACAGCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG agatctaaaagtctgtgatgagcccctcgtgaatgtctttcatatttcag--------CTGGTAGTGTCCCATTGCCATCGGGCTCGGTACCAGGGGCTGCTGCACCTTTCAGACC---ATTTAATGACCTTTGGTCACCCACCATGGGTTATGTACAGgtgagtttgaccaagggcttactcaaggatggagggacaaggcccctatt Alignment from Exonerate_protein2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG agatctaaaagtctgtgatgagcccctcgtgaatgtctttcatatttcagCTGGTAGTGTCCCATTGCCATCGGGCTCGGTACCAGGGGCTGCTGCACCTTTCAGACCA---TTTAATGACCTTTGGTCACCCACCATGGGTTATGTACAGgtgagtttgaccaagggcttactcaaggatggagggacaaggcccctatt Alignment from Exonerate_coding2genome ACAGCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG agatctaaaagtctgtgatgagcccctcgtgaatgtctttcatattTCAGCTGGTAGTGTCCCATTGCCATCGGGCTCGGTACCAGGGGCTGCTGCACCTTTCAGACCA---TTTAATGACCTTTGGTCACCCACCATGGGTTATGTACAGgtgagtttgaccaagggcttactcaaggatggagggacaaggcccctatt Alignment from GeneWise CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG agatctaaaagtctgtgatgagcccctcgtgaatgtctttcatatttcagCTGGTAGTGTCCCATTGCCATCGGGCTCGGTACCAGGGGCTGCTGCACCTTTCAGACCA---TTTAATGACCTTTGGTCACCCACCATGGGTTATGTACAGgtgagtttgaccaagggcttactcaaggatggagggacaaggcccctatt #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCC-ACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATG-TGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGG-CCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATG-TGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAG-CACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTGGCATGAGAAG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGGTGAGACAGTgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCC-ACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aggttctgccctgcttcatgttctttcttttttttcttttctcattccagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTCACGTATGCAG-GGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAagtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aggttctgccctgcttcatgttctttcttttttttcttttctcattccagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTCACGTATGCAGGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAagtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTCACGTATGCAGGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTC-CACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTCACGTATGCAG-GGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTC-CACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTCACGTATGCAGG-GAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTCACGTATGCAGGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTCACGTATGCAGGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTCACGTATGCAGGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGT-CCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctaggaAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCCTCCAA-TCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctaggaAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCCTCCAATCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCCTCCAATCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCTGGA---------GAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCCTCCAATCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCCTCCAATCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCCTCCAATCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCCTCCAATCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCCTCCAATCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt #### Col17a1_ID10282_40 --> 2 - 1 Original Alignment aaACCTTCTTCACTGGC-CCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg gagggggaaacatcccatcatttgcagcatttctttctctctctctgcagtaACATTCTTTAGGGGACCCTCCAG-TCCACCTGGCCCCCCAGGTCCAAAAGGGGACCAAggtaagagcagtaacctgaaagctcttaaccaagtgtgaagcttcactgat Alignment from CESAR aaACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg gagggggaaacatcccatcatttgcagcatttctttctctctctctgcagtaACATTCTTTAGGGGACCCTCCAGTCCACCTGGCCCCCCAGGTCCAAAAGGGGACCAAggtaagagcagtaacctgaaagctcttaaccaagtgtgaagcttcactgat Alignment from Spaln_aa2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gagggggaaacatcccatcatttgcagcatttctttctctctctctgcagTAACATTCTTTAGGGGACCCTCCAGTCCACCTGGCCCCCCAGGTCCAAAAGGGGACCAAGgtaagagcagtaacctgaaagctcttaaccaagtgtgaagcttcactgat Alignment from Spaln_nt2Genome AAACCTTCTTCACTGG-CCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gagggggaaacatcccatcatttgcagcatttctttctctctctctgcagTAACATTCTTTAGGGGACCCTCCA-GTCCACCTGGCCCCCCAGGTCCAAAAGGGGACCAAGgtaagagcagtaacctgaaagctcttaaccaagtgtgaagcttcactgat Alignment from Pairagon AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gagggggaaacatcccatcatttgcagcatttctttctctctctctgcagTAACATTCTTTAGGGGACCCTCCAGTCCACCTGGCCCCCCAGGTCCAAAAGGGGACCAAGgtaagagcagtaacctgaaagctcttaaccaagtgtgaagcttcactgat Alignment from Exonerate_protein2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gagggggaaacatcccatcatttgcagcatttctttctctctctctgcagTAACATTCTTTAGGGGACCCTCCAGTCCACCTGGCCCCCCAGGTCCAAAAGGGGACCAAGgtaagagcagtaacctgaaagctcttaaccaagtgtgaagcttcactgat Alignment from Exonerate_coding2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gagggggaaacatcccatcatttgcagcatttctttctctctctctgcagTAACATTCTTTAGGGGACCCTCCAGTCCACCTGGCCCCCCAGGTCCAAAAGGGGACCAAGgtaagagcagtaacctgaaagctcttaaccaagtgtgaagcttcactgat Alignment from GeneWise AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gagggggaaacatcccatcatttgcagcatttctttctctctctctgcagTAACATTCTTTAGGGGACCCTCCAGTCCACCTGGCCCCCCAGGTCCAAAAGGGGACCAAGgtaagagcagtaacctgaaagctcttaaccaagtgtgaagcttcactgat #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCC-ATGGGTCCCCCAGGACCTCCAGGGACGCCAg taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagaaGGATCCTCAACAATCACTGTACCTGGACCTCCCGGACCTTCTGGTGCCCATGGGTC-TCCTGGGCCTCCAGGGACACTGggtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from CESAR agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagaaGGATCCTCAACAATCACTGTACCTGGACCTCCCGGACCTTCTGGTGCCCATGGGTCTCCTGGGCCTCCAGGGACACTGggtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTGTACCTGGACCTCCCGGACCTTCTGGTGCCCATGGGTCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCC-ATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTGTACCTGGACCTCCCGGACCTTCTGGTGCCCATGGGT-CTCCTGGGCCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Pairagon AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTG-CCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTGTACCTGGACCTCCCGGACCTTCTGGTGCCCATGGGTCTCCT-GGGCCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTGTACCTGGACCTCCCGGACCTTCTGGTGCCCATGGGTCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Exonerate_coding2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTGTACCTGGACCTCCCGGACCTTCTGGTGCCCATGGGTCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from GeneWise AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTGTACCTGGACCTCCCGGACCTTCTGGTGCCCATGGGTCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat #### Col17a1_ID10293_29 --> 2 - 1 Original Alignment gtCCGGCTGGCGCTGAT-GGACAGCAAGGTTCCAGAg agcaatcagagagctcatttcttagctatactcctacttttctttaacaggtCCAGCTGGTGCTGATCGGAC-GCAAGGTTCACGAggtgaggcaatccttattgactagattgtagtcttattgatgactggttgc Alignment from CESAR gtCCGGCTGGCGCTGATGGACAGCAAGGTTCCAGAg agcaatcagagagctcatttcttagctatactcctacttttctttaacaggtCCAGCTGGTGCTGATCGGACGCAAGGTTCACGAggtgaggcaatccttattgactagattgtagtcttattgatgactggttgc Alignment from Spaln_aa2Genome GTCCGGCTGGCGCTGATGGACAGCAAGGTTCCAGAG agcaatcagagagctcatttcttagctatactcctacttttctttaacagGTCCAGCTGGTGCTGATCGGACGCAAGGTTCACGAGgtgaggcaatccttattgactagattgtagtcttattgatgactggttgc Alignment from Spaln_nt2Genome GTCCGGCTGGCGCTGATGGACAGCAAGGTTCCAGAG agcaatcagagagctcatttcttagctatactcctacttttctttaacagGTCCAGCTGGTGCTGATCGGACGCAAGGTTCACGAGgtgaggcaatccttattgactagattgtagtcttattgatgactggttgc Alignment from Pairagon GTCCGGCTGGCGCTGATGGACAGCAAGGTTCCAGAG agcaatcagagagctcatttcttagctatactcctacttttctttaacagGTCCAGCTGGTGCTGATCGGACGCAAGGTTCACGAGgtgaggcaatccttattgactagattgtagtcttattgatgactggttgc Alignment from Exonerate_protein2genome GTCCGGCTGGCGCTGATGGACAGCAAGGTTCCAGAG agcaatcagagagctcatttcttagctatactcctacttttctttaacagGTCCAGCTGGTGCTGATCGGACGCAAGGTTCACGAGgtgaggcaatccttattgactagattgtagtcttattgatgactggttgc Alignment from Exonerate_coding2genome agcaatcagagagctcatttcttagctatactcctacttttctttaacaggtccagctggtgctgatcggacgcaaggttcacgaggtgaggcaatccttattgactagattgtagtcttattgatgactggttgc Alignment from GeneWise agcaatcagagagctcatttcttagctatactcctacttttctttaacaggtccagctggtgctgatcggacgcaaggttcacgaggtgaggcaatccttattgactagattgtagtcttattgatgactggttgc #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTG-GGACTTCCTGGTGTCAAAg tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacaggtGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGCGGAC-GCCTGGTGTGAAAggtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacaggtGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGCGGACGCCTGGTGTGAAAggtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGCGGACGCCTGGTGTGAAAGgtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGCGGACGCCTGGTGTGAAAGgtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCACCAGGACCCAAAG tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGCGGACGCCTGGTGTGAAAGGT--------------------------------AGgttagggagggagg Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGCGGACGCCTGGTGTGAAAGgtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from Exonerate_coding2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCACCAGGACCCAAAGGTGACCAGGGTGAG tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGCGGACGCCTGGTGTGAAAGGTAGGTTAGGGAGGGAGGGGCAATTAAATGTTGAGGGGACGCTCATTCAA Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCACCAGGACCCAAAGGT tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGCGGACGCCTGGTGTGAAA---------GGTAGGTTAGGGAGGGAGGGGCAATTAAATgttgaggggacgctcattcaa #### Col17a1_ID10301_21 --> 2 - 1 Original Alignment gtATCCCTGGGCCCCTG-GGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg atgcaacatcaagaggaaatcagagtggctgtccttctccccctccacaggtATCCCTGGGCCATTACGGCCACCCTG-CCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTggtgagtgcttttttccatatatacatgttcctttgtgtttcccttccaaa Alignment from CESAR gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg atgcaacatcaagaggaaatcagagtggctgtccttctccccctccacaggtATCCCTGGGCCATTACGGCCACCCTGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTggtgagtgcttttttccatatatacatgttcctttgtgtttcccttccaaa Alignment from Spaln_aa2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atgcaacatcaagaggaaatcagagtggctgtccttctccccctccacagGTATCCCTGGGCCATTACGGCCACCCTGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtgagtgcttttttccatatatacatgttcctttgtgtttcccttccaaa Alignment from Spaln_nt2Genome GTATCCCTGGGCCCCTG-GGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atgcaacatcaagaggaaatcagagtggctgtccttctccccctccacagGTATCCCTGGGCCATTACGGCCACCCT-GCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtgagtgcttttttccatatatacatgttcctttgtgtttcccttccaaa Alignment from Pairagon GTATCCCTGGGCCCCTG-GGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atgcaacatcaagaggaaatcagagtggctgtccttctccccctccacagGTATCCCTGGGCCATTACGGCCACCCT-GCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtgagtgcttttttccatatatacatgttcctttgtgtttcccttccaaa Alignment from Exonerate_protein2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atgcaacatcaagaggaaatcagagtggctgtccttctccccctccacagGTATCCCTGGGCCATTACGGCCACCCTGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtgagtgcttttttccatatatacatgttcctttgtgtttcccttccaaa Alignment from Exonerate_coding2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atgcaacatcaagaggaaatcagagtggctgtccttctccccctccacagGTATCCCTGGGCCATTACGGCCACCCTGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtgagtgcttttttccatatatacatgttcctttgtgtttcccttccaaa Alignment from GeneWise AGGAGACCGAGGCCTTCCTGGGACCCCA------GGTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atgcaacatcaagagGAAATCAGAGTGGCTGTCCTTCTCCCCCTCCACAGGTATCCCTGGGCCATTACGGCCACCCTGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtgagtgcttttttccatatatacatgttcctttgtgtttcccttccaaa #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCA-TATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagctTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCGGCGCTATG-TGCTGACACCTGTCTGAAGGCAGATGTGAATggtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagctTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCGGCGCTATGTGCTGACACCTGTCTGAAGGCAGATGTGAATggtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCGGCGCTATGTGCTGACACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCGGCGCTATGTGCTGACACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGC---ATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCGGCGCTATGT---GCTGACACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCGGCGCTATGTGCTGACACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCGGCGCTATGTGCTGACACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCGGCGCTATGTGCTGACACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGAC-AAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACCAAGGCATTCC-AACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACCAAGGCATTCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACCAAGGCATTCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACCAAGGCATTCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACCAAGGCATTCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACCAAGGCATTCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACCAAGGCATTCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACCAAGGCATTCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATC-TGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccggtatgtgctgggctaattgaattcaacattgtttttctttcaggtTGTGACAATGTGGTACTTATCCTGGAATG-GGGTGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAATGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGGCACCCTGGTTGCGgtgggaacaaatgggaaatatttcgtccttcaacttcaaggccttgatcc Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccggtatgtgctgggctaattgaattcaacattgtttttctttcaggtTGTGACAATGTGGTACTTATCCTGGAATGGGGTGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAATGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGGCACCCTGGTTGCGgtgggaacaaatgggaaatatttcgtccttcaacttcaaggccttgatcc Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccggtatgtgctgggctaattgaattcaacattgtttttctttcagGTTGTGACAATGTGGTACTTATCCTGGAATGGGGTGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAATGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGGCACCCTGGTTGCGgtgggaacaaatgggaaatatttcgtccttcaacttcaaggccttgatcc Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccggtatgtgctgggctaattgaattcaacattgtttttctttcagGTTGTGACAATGTGGTACTTATCCTGGAATGGGGTGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAATGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGGCACCCTGGTTGCGgtgggaacaaatgggaaatatttcgtccttcaacttcaaggccttgatcc Alignment from Pairagon GTTGTGACAATGTGGTACTTAT-CTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccggtatgtgctgggctaattgaattcaacattgtttttctttcagGTTGTGACAATGTGGTACTTATCCTGGAATG-GGGTGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAATGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGGCACCCTGGTTGCGgtgggaacaaatgggaaatatttcgtccttcaacttcaaggccttgatcc Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccggtatgtgctgggctaattgaattcaacattgtttttctttcagGTTGTGACAATGTGGTACTTATCCTGGAATGGGGTGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAATGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGGCACCCTGGTTGCGgtgggaacaaatgggaaatatttcgtccttcaacttcaaggccttgatcc Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccggtatgtgctgggctaattgaattcaacattgtttttctttcagGTTGTGACAATGTGGTACTTATCCTGGAATGGGGTGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAATGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGGCACCCTGGTTGCGgtgggaacaaatgggaaatatttcgtccttcaacttcaaggccttgatcc Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccggtatgtgctgggctaattgaattcaacattgtttttctttcagGTTGTGACAATGTGGTACTTATCCTGGAATGGGGTGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAATGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGGCACCCTGGTTGCGgtgggaacaaatgggaaatatttcgtccttcaacttcaaggccttgatcc #### Crtac1_ID8462_10 --> 2 - 0 Original Alignment ggGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCC-ATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagggGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCCATGGCTCAGC-CTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from CESAR ggGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagggGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCCATGGCTCAGCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Spaln_aa2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCCATGGCTCAGCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Spaln_nt2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCC-ATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCCATGGCTCAGCC-TTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Pairagon GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGT-CCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCCATGGCTCAGCC-TTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Exonerate_protein2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCCATGGCTCAGCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Exonerate_coding2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCCATGGCTCAGCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from GeneWise GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCCATGGCTCAGCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCG-CCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG tacccaagtgcatgctacgctgcctgcaaataataagctctcattttcaggTTGGAGGTGACACGCCGACTCTTCCCACCCCATCCCAG-GATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaatgggtcataggcacttgcagtgagagttgagtgtgacactgggcct Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG tacccaagtgcatgctacgctgcctgcaaataataagctctcattttcaggTTGGAGGTGACACGCCGACTCTTCCCACCCCATCCCAGGATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaatgggtcataggcacttgcagtgagagttgagtgtgacactgggcct Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG tacccaagtgcatgctacgctgcctgcaaataataagctctcattttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCCATCCCAGGATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaatgggtcataggcacttgcagtgagagttgagtgtgacactgggcct Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG tacccaagtgcatgctacgctgcctgcaaataataagctctcattttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCCATCCCAGGATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaatgggtcataggcacttgcagtgagagttgagtgtgacactgggcct Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG tacccaagtgcatgctacgctgcctgcaaataataagctctcattttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCCATCCCAGGATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaatgggtcataggcacttgcagtgagagttgagtgtgacactgggcct Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG tacccaagtgcatgctacgctgcctgcaaataataagctctcattttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCCATCCCAGGATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaatgggtcataggcacttgcagtgagagttgagtgtgacactgggcct Alignment from Exonerate_coding2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAGACCCTCAGGAAGGACCTCCTGCAG tacccaagtgcatgctacgctgcctgcaaataataagctctcattttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCCATCCCAGGATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGGTAATGGGTCATAGGCACTTGCAGtgagagttgagtgtgacactgggcct Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAGACCCTCAGGAAGGACCTCCTGCAGCCC tacccaagtgcatgctacgctgcctgcaaataataagctctcattttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCCATCCCAGGATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGGTAATGGGTCATAGGCACTTGCAG---tgagagttgagtgtgacactggg #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCC-TGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagagCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCCTGCAACTCTT-CCATTGCACTGTGTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagagCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCCTGCAACTCTTCCATTGCACTGTGTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCCTGCAACTCTTCCATTGCACTGTGTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGC-GTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCCTGCAACTCTT-CCATTGCACTGTGTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGC-GTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCCTGCAACTCTT-CCATTGCACTGTGTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCCTGCAACTCTTCCATTGCACTGTGTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCCTGCAACTCTTCCATTGCACTGTGTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCCTGCAACTCTTCCATTGCACTGTGTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGA-TGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagaGGTCATGATGTAGCACACCTGCATGGCTG-TCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGggtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagaGGTCATGATGTAGCACACCTGCATGGCTGTCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGggtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACCTGCATGGCTGTCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGA-TGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACCTGCATGGCTG-TCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Pairagon GGGTCACGACGTGGCGCG-ATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACCTGCATGGCTG-TCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACCTGCATGGCTGTCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Exonerate_coding2genome GGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagaGGTCATGATGTAGCACACCTGCATGGCTGTCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACCTGCATGGCTGTCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCA-CCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCTGGAATCCACACTAGATGAGCCACCCTTGCA-TGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCTGGAATCCACACTAGATGAGCCACCCTTGCATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCTGGAATCCACACTAGATGAGCCACCCTTGCATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCTGGAATCCACACTAGATGAGCCACCCTTGCATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCTGGAATCCACACTAGATGAGCCACCCTTGCATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCTGGAATCCACACTAGATGAGCCACCCTTGCATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Exonerate_coding2genome agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaaggctggtcagggctccctgttttctctggaatccacactagatgagccacccttgcatgatcctttggtgtgctcgctacctgaaacaaagaagaccgtggtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCTGGAATCCACACTAGATGAGCCACCCTTGCATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCA-TTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagagTTTCGAAATGTCACCCTTGGCTCACTCCTACCACCTGC-TGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagagTTTCGAAATGTCACCCTTGGCTCACTCCTACCACCTGCTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACCTGCTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACCTGCTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACCTGCTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACCTGCTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACCTGCTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACCTGCTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAGGTGGACAAG-GCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg tcagacaaacccctccatagggttccttcccctggttctcggttctgcagagCTCTCAGATTGTGGCAAAGAGGACAAGCGCCT-CTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtaagatatggtgaatccacctgtggatgacaacggctaccatgttgttg Alignment from CESAR agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg tcagacaaacccctccatagggttccttcccctggttctcggttctgcagagCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtaagatatggtgaatccacctgtggatgacaacggctaccatgttgttg Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaacccctccatagggttccttcccctggttctcggttctgcagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatatggtgaatccacctgtggatgacaacggctaccatgttgttg Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaacccctccatagggttccttcccctggttctcggttctgcagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatatggtgaatccacctgtggatgacaacggctaccatgttgttg Alignment from Pairagon AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaacccctccatagggttccttcccctggttctcggttctgcagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatatggtgaatccacctgtggatgacaacggctaccatgttgttg Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaacccctccatagggttccttcccctggttctcggttctgcagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatatggtgaatccacctgtggatgacaacggctaccatgttgttg Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaacccctccatagggttccttcccctggttctcggttctgcagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatatggtgaatccacctgtggatgacaacggctaccatgttgttg Alignment from GeneWise -------------------------------------------------GAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG TCAGACAAACCCCTCCATAGGGTTCCTTCCCCTGGTTCTCGGTTCTGCAGAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatatggtgaatccacctgtggatgacaacggctaccatgttgttg #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGAT-GACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaaggaGGTCTGGAGACAGAGGACCGACTACG-CTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATagtaaaagagggctgccctaggcgactcagggttaacacaactgggccctg Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaaggaGGTCTGGAGACAGAGGACCGACTACGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATagtaaaagagggctgccctaggcgactcagggttaacacaactgggcctac Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACCGACTACGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggccctg Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACCGACTACGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggccctg Alignment from Pairagon GAGGGCTGGAGACAGAGGA-TGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACCGACTAC-GCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggccctg Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACCGACTACGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggccctg Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACCGACTACGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggccctg Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACCGACTACGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggccctg #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAGAAA-GGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggcgactcagggttaacacaactgggcctaccttaactcccacatttcagagAGAGCAGCCTGGCTGGCCCAGAAACGGTCCTA-TTCAGTCGCCATCAATGCCTTTGGAATGCAGgtaagttggttctaacctccctgtgcctcctcaaccaatcagcaataatc Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggcgactcagggttaacacaactgggcctaccttaactcccacatttcagagAGAGCAGCCTGGCTGGCCCAGAAACGGTCCTATTCAGTCGCCATCAATGCCTTTGGAATGCAGgtaagttggttctaacctccctgtgcctcctcaaccaatcagcaataatc Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggcgactcagggttaacacaactgggcctaccttaactcccacatttcagAGAGAGCAGCCTGGCTGGCCCAGAAACGGTCCTATTCAGTCGCCATCAATGCCTTTGGAATGCAGgtaagttggttctaacctccctgtgcctcctcaaccaatcagcaataatc Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAA-GGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggcgactcagggttaacacaactgggcctaccttaactcccacatttcagAGAGAGCAGCCTGGCTGGCCCAGAAACGGTCCTAT-TCAGTCGCCATCAATGCCTTTGGAATGCAGgtaagttggttctaacctccctgtgcctcctcaaccaatcagcaataatc Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAGAAA-GGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggcgactcagggttaacacaactgggcctaccttaactcccacatttcagAGAGAGCAGCCTGGCTGGCCCAGAAACGGTCCTAT-TCAGTCGCCATCAATGCCTTTGGAATGCAGgtaagttggttctaacctccctgtgcctcctcaaccaatcagcaataatc Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggcgactcagggttaacacaactgggcctaccttaactcccacatttcagAGAGAGCAGCCTGGCTGGCCCAGAAACGGTCCTATTCAGTCGCCATCAATGCCTTTGGAATGCAGgtaagttggttctaacctccctgtgcctcctcaaccaatcagcaataatc Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggcgactcagggttaacacaactgggcctaccttaactcccacatttcagAGAGAGCAGCCTGGCTGGCCCAGAAACGGTCCTATTCAGTCGCCATCAATGCCTTTGGAATGCAGgtaagttggttctaacctccctgtgcctcctcaaccaatcagcaataatc Alignment from GeneWise AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggcgactcagggttaacacaactgggcctaccttaactcccacatttcagAGAGAGCAGCCTGGCTGGCCCAGAAACGGTCCTATTCAGTCGCCATCAATGCCTTTGGAATGCAGgtaagttggttctaacctccctgtgcctcctcaaccaatcagcaataatc #### Ctsf_ID685_13 --> 2 - 0 Original Alignment gcTCTAACATTCCTTACTGGGCCATCAAGAAC-AGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTACCG acaacaagaggctgaggatttttggctcaccccctctctctcttgagcaggtTCTAACATTCCTTACTGGGCAATCAAGAATCAGCTGGG-CAGTGACTGGGGTGAGGAGgtgagttttctctctctcctctccctgcagGGTTACTACTACTTATACCG Alignment from CESAR gcTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTACCG acaacaagaggctgaggatttttggctcaccccctctctctcttgagcaggtTCTAACATTCCTTACTGGGCAATCAAGAATCAGCTGGGCAGTGACTGGGGTGAGGAGgtgagcttaccaaacacactgttgatgcagGGTTACTACTACTTATACCG Alignment from Spaln_aa2Genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG------------------------------GGTTACTACTACTTGTACCG acaacaagaggctgaggatttttggctcaccccctctctctcttgagcagGTTCTAACATTCCTTACTGGGCAATCAAGAATCAGCTGGGCAGTGACTGGGGTGAGGAGGTGAGTTTTCTCTCTCTCCTCTCCCTGCAGGGTTACTACTACTTATACCG Alignment from Spaln_nt2Genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGG------------------------------AGGGTTACTACTACTTGTACCG acaacaagaggctgaggatttttggctcaccccctctctctcttgagcagGTTCTAACATTCCTTACTGGGCAATCAAGAATCAGCTGGGCAGTGACTGGGGTGAGGAGGTGAGTTTTCTCTCTCTCCTCTCCCTGCAGGGTTACTACTACTTATACCG Alignment from Pairagon GCTCTAACATTCCTTACTGGGCCATCAAGAA-CAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTACCG acaacaagaggctgaggatttttggctcaccccctctctctcttgagcagGTTCTAACATTCCTTACTGGGCAATCAAGAATCAGCT-GGGCAGTGACTGGGGTGAGGAGgtgagttttctctctctcctctccctgcagGGTTACTACTACTTATACCG Alignment from Exonerate_protein2genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTACCG acaacaagaggctgaggatttttggctcaccccctctctctcttgagcagGTTCTAACATTCCTTACTGGGCAATCAAGAATCAGCTGGGCAGTGACTGGGGTGAGGAGgtgagttttctctctctcctctccctgcagGGTTACTACTACTTATACCG Alignment from Exonerate_coding2genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTACCG acaacaagaggctgaggatttttggctcaccccctctctctcttgagcagGTTCTAACATTCCTTACTGGGCAATCAAGAATCAGCTGGGCAGTGACTGGGGTGAGGAGgtgagttttctctctctcctctccctgcagGGTTACTACTACTTATACCG Alignment from GeneWise GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG------------------------------GGTTACTACTACTTGTACCG acaacaagaggctgaggatttttggctcaccccctctctctcttgagcagGTTCTAACATTCCTTACTGGGCAATCAAGAATCAGCTGGGCAGTGACTGGGGTGAGGAGGTGAGTTTTCTCTCTCTCCTCTCCCTGCAGGGTTACTACTACTTATACCG #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGC-TCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTCTCCT-TGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTCTCCTTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTCTCCTTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTCTCCTTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTG------TCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTCTCCTTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTCTCCTTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTCTCCTTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTG------GTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTCTCCTTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAG-GTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcaggtGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGCAT-GATCCAG------GCCACATTGTCTAATAATGAGCAGggtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcaggtGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGCATGATCCAG------GCCACATTGTCTAATAATGAGCAGggtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGCATGATCCAG------GCCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAG-AAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGCAT-GATCCAGG------CCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAA-GAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGCAT-GATCCAGG------CCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGCATGATCCAG------GCCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGCATGATCCAG------GCCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAACGTGGCATGATCCAG------GCCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGAC-TTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactagccactacctgactcgaaagatcttcactttctttcacaacagagTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACCTTGGGTACTG-TGAGCTTGGAGAGACACCATTCAGTGACCTCAACagtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactagccactacctgactcgaaagatcttcactttctttcacaacagagTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACCTTGGGTACTGTGAGCTTGGAGAGACACCATTCAGTGACCTCAACagtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACCTTGGGTACTGTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACCTTGGGTACTGTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGA-CTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACCTTGGGTACTG-TGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACCTTGGGTACTGTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACCTTGGGTACTGTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACCTTGGGTACTGTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTT-CCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCCA-TGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgccttctcttcttttcttccagGGTGTT---ACACGCAACA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCCATGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCCATGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgccttctcttcttttcttccagGGTGTT---ACACGCAACA Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCCATGATGTCCCATTCAGCGGTTTGTACCGTGTAAGTCATGCCTTCTCTTCTTTTCTTCCAGGGTGTTA---CACGCAACA Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCCATGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgccttctcttcttttcttccagGGTGTTA---CACGCAACA Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCCATGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgccttctcttcttttcttccagGGTGTT---ACACGCAACA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCCATGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgccttctcttcttttcttccagGGTGTT---ACACGCAACA Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCCATGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgccttctcttcttttcttccagGGTGTT---ACACGCAACA #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTG-CGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gaatcttattttcttgtccctaggaggttagttactgatttttcttacaggcCTTACATTCAGTAAAGGGAATGTATGGAGAAACACGAGGCACTTCTCAGTCATGCCATTGCCGGA-TTTAGGTATGGGGAAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACTAACtgtaaggctaggtttatgggtgatcatgttcttatcgaattcggctgtcac Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gaatcttattttcttgtccctaggaggttagttactgatttttcttacaggcCTTACATTCAGTAAAGGGAATGTATGGAGAAACACGAGGCACTTCTCAGTCATGCCATTGCCGGATTTAGGTATGGGGAAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACTAACtgtaaggctaggtttatgggtgatcatgttcttatcgaattcggctgtcac Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gaatcttattttcttgtccctaggaggttagttactgatttttcttacagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACGAGGCACTTCTCAGTCATGCCATTGCCGGATTTAGGTATGGGGAAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACTAACTgtaaggctaggtttatgggtgatcatgttcttatcgaattcggctgtcac Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gaatcttattttcttgtccctaggaggttagttactgatttttcttacagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACGAGGCACTTCTCAGTCATGCCATTGCCGGATTTAGGTATGGGGAAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACTAACTgtaaggctaggtttatgggtgatcatgttcttatcgaattcggctgtcac Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gaatcttattttcttgtccctaggaggttagttactgatttttcttacagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACGAGGCACTTCTCAGTCATGCCATTGCCGGATTTAGGTATGGGGAAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACTAACTgtaaggctaggtttatgggtgatcatgttcttatcgaattcggctgtcac Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gaatcttattttcttgtccctaggaggttagttactgatttttcttacagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACGAGGCACTTCTCAGTCATGCCATTGCCGGATTTAGGTATGGGGAAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACTAACTgtaaggctaggtttatgggtgatcatgttcttatcgaattcggctgtcac Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gaatcttattttcttgtccctaggaggttagttactgatttttcttacagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACGAGGCACTTCTCAGTCATGCCATTGCCGGATTTAGGTATGGGGAAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACTAACTgtaaggctaggtttatgggtgatcatgttcttatcgaattcggctgtcac Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gaatcttattttcttgtccctaggaggttagttactgatttttcttacagGCCTTACATTCAGTAAAGGGAATGTATGGAGAAACACGAGGCACTTCTCAGTCATGCCATTGCCGGATTTAGGTATGGGGAAGAGGAGCATTAAGGGTCACATTCAAGACGAAGCACATTGTCTTGTCGAGGAACTTAGGAAGACTAACTgtaaggctaggtttatgggtgatcatgttcttatcgaattcggctgtcac #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCC-ACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTCACTGTAGTAT-ACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from CESAR TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTCACTGTAGTATACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Spaln_aa2Genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTCACTGTAGTATACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATG---GCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTCACTGTAGTATACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Pairagon TTATCAAAAGTTT---ATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCC-CACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTCACTGTAGTA-TACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Exonerate_protein2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTCACTGTAGTATACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Exonerate_coding2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTCACTGTAGTATACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from GeneWise TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATG--------------------------------------------------- ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTCACTGTAGTATACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGGTAACAATAGGTTTGGAATACCAGTGAGAGAATGTGTGAGTCCATCCCAG #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAA-TTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg atgcccaacttatgcctacgtgtacacacccacttcctcccttccatcagAAATTTCAAGAACTTAC-TAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCCAAAAAGggtaggaaaacttaagtcctgaaatctagcttggggatgttggcttacttc Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg atgcccaacttatgcctacgtgtacacacccacttcctcccttccatcagAAATTTCAAGAACTTACTAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCCAAAAAGggtaggaaaacttaagtcctgaaatctagcttggggatgttggcttacttc Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccaacttatgcctacgtgtacacacccacttcctcccttccatcagAAATTTCAAGAACTTACTAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCCAAAAAGGgtaggaaaacttaagtcctgaaatctagcttggggatgttggcttacttc Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccaacttatgcctacgtgtacacacccacttcctcccttccatcagAAATTTCAAGAACTTACTAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCCAAAAAGGgtaggaaaacttaagtcctgaaatctagcttggggatgttggcttacttc Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccaacttatgcctacgtgtacacacccacttcctcccttccatcagAAATTTCAAGAACTTACTAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCCAAAAAGGgtaggaaaacttaagtcctgaaatctagcttggggatgttggcttacttc Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccaacttatgcctacgtgtacacacccacttcctcccttccatcagAAATTTCAAGAACTTACTAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCCAAAAAGGgtaggaaaacttaagtcctgaaatctagcttggggatgttggcttacttc Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGCAAATTGAAGAATGAAAAGGAATCTCACAG atgcccaacttatgcctacgtgtacacacccacttcctcccttccatcagAAATTTCAAGAACTTACTAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCCAAAAAGGGTAGGAAAACTTAAGTCCTGAAATCTAGCTTggggatgttggcttacttc Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccaacttatgcctacgtgtacacacccacttcctcccttccatcagAAATTTCAAGAACTTACTAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCCAAAAAGGgtaggaaaacttaagtcctgaaatctagcttggggatgttggcttacttc #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAG-CTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacaggGTTGGCCTTTCCCAACCTGGAAG-ATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from CESAR gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacaggGTTGGCCTTTCCCAACCTGGAAGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACCTGGAAGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACCTGGAAGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Pairagon GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACCTGGAAGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACCTGGAAGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACCTGGAAGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATG-GTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGCGTCTTGTCCC-GGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from CESAR GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGCGTCTTGTCCCGGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Spaln_aa2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGCGTCTTGTCCCGGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGCGTCTTGTCCCGGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATG-GTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGCGTCTTGTCCC-GGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGCGTCTTGTCCCGGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGCGTCTTGTCCCGGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACAC-AGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACCAGAGGTGCCT-GTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from CESAR GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACCAGAGGTGCCTGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACCAGAGGTGCCTGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Spaln_nt2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACAC-AGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACCAGAGGTGCCT-GTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Pairagon GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACA-CAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACCAGAGGTGCCT-GTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Exonerate_protein2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACCAGAGGTGCCTGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACCAGAGGTGCCTGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCT-GCACCAGGAGACAGGACAATG cttggcacctgtgtaagcatctttagagcttctgaatctttgcttgacaggTATGGAAAGGCTCGCACCAG-AGACAGGACAATGgtaagtttactttccccctttgggccctcctaaggtgctggggtctggct Alignment from CESAR gTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaagcatctttagagcttctgaatctttgcttgacaggTATGGAAAGGCTCGCACCAGAGACAGGACAATGgtaagtttactttccccctttgggccctcctaaggtgctggggtctggcc Alignment from Spaln_aa2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaagcatctttagagcttctgaatctttgcttgacagGTATGGAAAGGCTCGCACCAGAGACAGGACAATGgtaagtttactttccccctttgggccctcctaaggtgctggggtctggct Alignment from Spaln_nt2Genome GTATGGAAAGGCT-GCACCAGGAGACAGGACAATG cttggcacctgtgtaagcatctttagagcttctgaatctttgcttgacagGTATGGAAAGGCTCGCACCA-GAGACAGGACAATGgtaagtttactttccccctttgggccctcctaaggtgctggggtctggct Alignment from Pairagon GTATGGAAAGGCT-GCACCAGGAGACAGGACAATG cttggcacctgtgtaagcatctttagagcttctgaatctttgcttgacagGTATGGAAAGGCTCGCACCA-GAGACAGGACAATGgtaagtttactttccccctttgggccctcctaaggtgctggggtctggct Alignment from Exonerate_protein2genome cttggcacctgtgtaagcatctttagagcttctgaatctttgcttgacaggtatggaaaggctcgcaccagagacaggacaatggtaagtttactttccccctttgggccctcctaaggtgctggggtctggct Alignment from Exonerate_coding2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaagcatctttagagcttctgaatctttgcttgacagGTATGGAAAGGCTCGCACCAGAGACAGGACAATGgtaagtttactttccccctttgggccctcctaaggtgctggggtctggct Alignment from GeneWise ---GCTGCACCAGGAG cttggcacctgtgtaagcatctttagagcttctgaatctttgcttgacaggtatggaaaggctcgcaccagagacaggacaatggtaagtttactttccccctttgggccctcctaagGTGCTGGGGTCTGGCT #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTG-GGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacaggtTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCT-TTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTggtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacaggtTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTggtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTG-GGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCT-TTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATC-TGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCT-TTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcaggtACCCTAGGTGTGACCTTGCTCATCCT-TAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGggtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcaggtACCCTAGGTGTGACCTTGCTCATCCTTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGggtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCTTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCT-TAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Pairagon GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCT-TAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCTTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCTTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCTTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAAT-GTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag gtaagagctttgccctgttttgcttccccttggcctccctgcctccacaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATCGTCAACC-CAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag gtaagagctttgccctgttttgcttccccttggcctccctgcctccacaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATCGTCAACCCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATCGTCAACCCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATCGTCAACCCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAAT-GTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATCGTCAACC-CAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATCGTCAACCCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATCGTCAACCCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATCGTCAACCCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt #### Ddb1_ID2936_21 --> 2 - 0 Original Alignment gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTAC-TCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctaaggaaaagcctattaagaaacctcctctcactcccgcccaggaAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGAGCTGTGTACCTCCATGG-GGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtcaggggcaggggtttacatgcttgtggattgattcttctcttctgagc Alignment from CESAR gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctaaggaaaagcctattaagaaacctcctctcactcccgcccaggaAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGAGCTGTGTACCTCCATGGGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtcaggggcaggggtttacatgcttgtggattgattcttctcttctgagc Alignment from Spaln_aa2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctaaggaaaagcctattaagaaacctcctctcactcccgcccagGAAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGAGCTGTGTACCTCCATGGGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtcaggggcaggggtttacatgcttgtggattgattcttctcttctgagc Alignment from Spaln_nt2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctaaggaaaagcctattaagaaacctcctctcactcccgcccagGAAAGCT---GACTGTCACTGATAAGGAAGTAAAAGGAGCTGTGTACCTCCATGGGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtcaggggcaggggtttacatgcttgtggattgattcttctcttctgagc Alignment from Pairagon GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTA-CTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctaaggaaaagcctattaagaaacctcctctcactcccgcccagGAAAGCT---GACTGTCACTGATAAGGAAGTAAAAGGAGCTGTGTACCTCCATGG-GGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtcaggggcaggggtttacatgcttgtggattgattcttctcttctgagc Alignment from Exonerate_protein2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctaaggaaaagcctattaagaaacctcctctcactcccgcccagGAAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGAGCTGTGTACCTCCATGGGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtcaggggcaggggtttacatgcttgtggattgattcttctcttctgagc Alignment from Exonerate_coding2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctaaggaaaagcctattaagaaacctcctctcactcccgcccagGAAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGAGCTGTGTACCTCCATGGGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtcaggggcaggggtttacatgcttgtggattgattcttctcttctgagc Alignment from GeneWise ---ACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctaaggaaaagcctattaagaaacctcctctcactcccgcccaggaaagCTGACTGTCACTGATAAGGAAGTAAAAGGAGCTGTGTACCTCCATGGGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtcaggggcaggggtttacatgcttgtggattgattcttctcttctgagc #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCT-TCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagtGCCGCAACCACTGTTGAGGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTCTCCA-TCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAggtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagtGCCGCAACCACTGTTGAGGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTCTCCATCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAggtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTCTCCATCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCT-TCTACCC--CTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTCTCCATCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTCTCCATCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTCTCCATCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTCTCCATCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCACCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTCTCCATCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac #### Dock8_ID5396_17 --> 1 - 0 Original Alignment gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTC-CTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGACAGTGAATCATCATCTTCCTCT-CACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from CESAR gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGACAGTGAATCATCATCTTCCTCTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Spaln_aa2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGACAGTGAATCATCATCTTCCTCTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Spaln_nt2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGACAGTGAATCATCATCTTCCTCTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Pairagon GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGACAGTGAATCATCATCTTCCTCTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Exonerate_protein2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGACAGTGAATCATCATCTTCCTCTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Exonerate_coding2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGACAGTGAATCATCATCTTCCTCTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from GeneWise GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGACAGTGAATCATCATCTTCCTCTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTG-CAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg tgtttgctgagtcctagtaaactcaatggtattcattgtcttttcattagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCCAGA-GTCAAGAGACGTCAAGGCCAAACTGGAAGAGGCCCTGCTCCGTGGCGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtaagagttcattccaacactgtaacctcaagttattcaaggctgctgca Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg tgtttgctgagtcctagtaaactcaatggtattcattgtcttttcattagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCCAGAGTCAAGAGACGTCAAGGCCAAACTGGAAGAGGCCCTGCTCCGTGGCGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtaagagttcattccaacactgtaacctcaagttattcaaggctgctgca Alignment from Spaln_aa2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG tgtttgctgagtcctagtaaactcaatggtattcattgtcttttcattagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCCAGAGTCAAGAGACGTCAAGGCCAAACTGGAAGAGGCCCTGCTCCGTGGCGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtaagagttcattccaacactgtaacctcaagttattcaaggctgctgca Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG tgtttgctgagtcctagtaaactcaatggtattcattgtcttttcattagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCCAGAGTCAAGAGACGTCAAGGCCAAACTGGAAGAGGCCCTGCTCCGTGGCGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtaagagttcattccaacactgtaacctcaagttattcaaggctgctgca Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG tgtttgctgagtcctagtaaactcaatggtattcattgtcttttcattagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCCAGAGTCAAGAGACGTCAAGGCCAAACTGGAAGAGGCCCTGCTCCGTGGCGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtaagagttcattccaacactgtaacctcaagttattcaaggctgctgca Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG tgtttgctgagtcctagtaaactcaatggtattcattgtcttttcattagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCCAGAGTCAAGAGACGTCAAGGCCAAACTGGAAGAGGCCCTGCTCCGTGGCGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtaagagttcattccaacactgtaacctcaagttattcaaggctgctgca Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG tgtttgctgagtcctagtaaactcaatggtattcattgtcttttcattagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCCAGAGTCAAGAGACGTCAAGGCCAAACTGGAAGAGGCCCTGCTCCGTGGCGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtaagagttcattccaacactgtaacctcaagttattcaaggctgctgca Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG tgtttgctgagtcctagtaaactcaatggtattcattgtcttttcattagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCCAGAGTCAAGAGACGTCAAGGCCAAACTGGAAGAGGCCCTGCTCCGTGGCGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtaagagttcattccaacactgtaacctcaagttattcaaggctgctgca #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACT-GTGATCAACCCAGAGACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACC-AGAGACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCAGAGACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCAGAGACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACT-GTGATCAACCCAGAGACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAA-CCAGAGACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGAC-TGTGATCAACCCAGAGACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAA-CCAGAGACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCAGAGACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCAGAGACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCAGAGACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCC-GCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCCGCAAAGCGAG-GAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCCGCAAAGCGAGGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCCGCAAAGCGAGGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCCGCAAAGCGAGGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATG-CCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCCGCAAAGCGAG-GAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCCGCAAAGCGAGGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCCGCAAAGCGAGGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCCGCAAAGCGAGGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCAT-AAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATCAAGAGGGGTT-CCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAaggtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATCAAGAGGGGTTCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAaggtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATCAAGAGGGGTTCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATCAAGAGGGGTTCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATCAAGAGGGGTTCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATCAAGAGGGGTTCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATCAAGAGGGGTTCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATCAAGAGGGGTTCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGAT-ACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATCATGGATACTG-TGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGaggtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATCATGGATACTGTGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGaggtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATCATGGATACTGTGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Spaln_nt2Genome GATGAGTCTGAGGAT-ACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATCATGGATACTG-TGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Pairagon GATGAGTCTGAGGAT-ACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATCATGGATACTG-TGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATCATGGATACTGTGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Exonerate_coding2genome AGGATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacAGGATAAGTCTGAGGATCATGGATACTGTGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATCATGGATACTGTGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGA-GGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtaggtagcaaggggtctgcgagtactctgtactttggacaggGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCCGGCACAGGAA-CAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtacaaagcaaggggtctgcgagtactctgtactttggacaggGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCCGGCACAGGAACAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaggtagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCCGGCACAGGAACAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGA-GGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaggtagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCCGGCACAGGAA-CAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Pairagon CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGG-AGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaggtagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCCGGCACAGGAA-CAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaggtagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCCGGCACAGGAACAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Exonerate_coding2genome CCTCGAAGGGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAA---GGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGGATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAG CCTCGAAGGTAGGTAGCAAGGGGTCTGCGAGTACTCTGTACTTTGGACAGGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCCGGCACAGGAACAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from GeneWise CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaggtagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCCGGCACAGGAACAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAGTGG-GATGCAGACAGCCAGCACTGCCGGg actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAATGGCGATGCAG-TAGCCAACATTGCCAAggtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from CESAR GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGg actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAATGGCGATGCAGTAGCCAACATTGCCAAggtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAATGGCGATGCAGTAGCCAACATTGCCAAGgtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAGTGG-GATGCAGACAGCCAGCACTGCCGGG actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAATGGCGATGCAG-TAGCCAACATTGCCAAGgtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Pairagon GAATGCACAGATGGCTATGAGTGG-GATGCAGACAGCCAGCACTGCCGGG actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAATGGCGATGCAG-TAGCCAACATTGCCAAGgtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Exonerate_protein2genome actaaccaagatggcaataataatgatgcctaggtagtttttcattacaggagtgtgcagatggctgcgaatggcgatgcagtagccaacattgccaaggtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Exonerate_coding2genome actaaccaagatggcaataataatgatgcctaggtagtttttcattacaggagtgtgcagatggctgcgaatggcgatgcagtagccaacattgccaaggtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from GeneWise GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAATGGCGATGCAGTAGCCAACATTGCCAAGgtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAA-CTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagaaTGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCCTGGTCCGGG-TCTAGATCAGAAGGAGCGGgtgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagaaTGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCCTGGTCCGGGTCTAGATCAGAAGGAGCGGgtgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCCTGGTCCGGGTCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAAC-TGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCCTGGTCCGGG-TCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAA-CTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCCTGGTCCGGG-TCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCCTGGTCCGGGTCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCCTGGTCCGGGTCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCCTGGTCCGGGTCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc #### Ehbp1l1_ID1221_14 --> 2 - 0 Original Alignment gtGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG atggaatttctgttattcactgaaagggaacaatacttcttgttttacaggtGGGCCACCACCTACTGAAAAGCTCATCAC-TAGCCTGGAGGAAGAGACAGGGCTGgtaattattggtaggttgattagtggctgtgttactttcctgactggctc Alignment from CESAR gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG atggaatttctgttattcactgaaagggaacaatacttcttgttttacaggtGGGCCACCACCTACTGAAAAGCTCATCACTAGCCTGGAGGAAGAGACAGGGCTGgtaattattggtaggttgattagtggctgtgttactttcctgactggctc Alignment from Spaln_aa2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG atggaatttctgttattcactgaaagggaacaatacttcttgttttacagGTGGGCCACCACCTACTGAAAAGCTCATCACTAGCCTGGAGGAAGAGACAGGGCTGgtaattattggtaggttgattagtggctgtgttactttcctgactggctc Alignment from Spaln_nt2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG atggaatttctgttattcactgaaagggaacaatacttcttgttttacagGTGGGCCACCACCTACTGAAAAGCTCATCACTAGCCTGGAGGAAGAGACAGGGCTGgtaattattggtaggttgattagtggctgtgttactttcctgactggctc Alignment from Pairagon GTGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG atggaatttctgttattcactgaaagggaacaatacttcttgttttacagGTGGGCCACCACCTACTGAAAAGCTCATCA-CTAGCCTGGAGGAAGAGACAGGGCTGgtaattattggtaggttgattagtggctgtgttactttcctgactggctc Alignment from Exonerate_protein2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG atggaatttctgttattcactgaaagggaacaatacttcttgttttacagGTGGGCCACCACCTACTGAAAAGCTCATCACTAGCCTGGAGGAAGAGACAGGGCTGgtaattattggtaggttgattagtggctgtgttactttcctgactggctc Alignment from Exonerate_coding2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG atggaatttctgttattcactgaaagggaacaatacttcttgttttacagGTGGGCCACCACCTACTGAAAAGCTCATCACTAGCCTGGAGGAAGAGACAGGGCTGgtaattattggtaggttgattagtggctgtgttactttcctgactggctc Alignment from GeneWise GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG atggaatttctgttattcactgaaagggaacaatacttcttgttttacagGTGGGCCACCACCTACTGAAAAGCTCATCACTAGCCTGGAGGAAGAGACAGGGCTGgtaattattggtaggttgattagtggctgtgttactttcctgactggctc #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAG-CCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTCTG-CAAAGTTGTGCATGCCGAGCTTAGCCTCACACTTGCAGTC---CTTCTACAAGAAGGCCGTGCCacgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTCTGCAAAGTTGTGCATGCCGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCacgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTCTGCAAAGTTGTGCATGCCGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCACgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTCTGCAAAGTTGTGCATGCCGAGCTTAGCCTCACACT---TGCAGTCCTTCTACAAGAAGGCCGTGCCACgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAG-CCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTCTGC-AAAGTTGTGCATGCCGAGCTTAGCCTCACACT---TGCAGTCCTTCTACAAGAAGGCCGTGCCACgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Exonerate_protein2genome ctcccccacccctgccagatcagagaagtcaacctttattgttcccacaggagtcaaagggacagcggaaagtattagcaacagttggtgtcaatttagaccatcatgcagggcccatacctgcccagatctcacttcaactgcggcagaagccccaagtctgcaaagttgtgcatgccgagcttagcctcacacttgcagtccttctacaagaaggccgtgccacgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Exonerate_coding2genome ctcccccacccctgccagatcagagaagtcaacctttattgttcccacaggagtcaaagggacagcggaaagtattagcaacagttggtgtcaatttagaccatcatgcagggcccatacctgcccagatctcacttcaactgcggcagaagccccaagtctgcaaagttgtgcatgccgagcttagcctcacacttgcagtccttctacaagaaggccgtgccacgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCCAAGTCTGCAAAGTTGTGCATGCCGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCACgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAG-GTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCAGGGAACAATTTGCACGAGCGTGGAAA-TGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCAGGGAACAATTTGCACGAGCGTGGAAATGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCAGGGAACAATTTGCACGAGCGTGGAAATGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCAGGGAACAATTTGCACGAGCGTGGAAATGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAG-GTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCAGGGAACAATTTGCACGAGCGTGGAAAT-GCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCAGGGAACAATTTGCACGAGCGTGGAAATGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCAGGGAACAATTTGCACGAGCGTGGAAATGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCAGGGAACAATTTGCACGAGCGTGGAAATGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTG-AAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatattgactcatgctcctcatcacaactctgacttgttactatctgtagggGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTCAAGGCAGAGA-CTCATTTGTACTCTGCAAGAACCATGTCCACACCCTACAGAAGGAAGGCCAAtggtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatattgactcatgctcctcatcacaactctgacttgttactatctgtagggGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTCAAGGCAGAGACTCATTTGTACTCTGCAAGAACCATGTCCACACCCTACAGAAGGAAGGCCAAtggtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTCAAGGCAGAGACTCATTTGTACTCTGCAAGAACCATGTCCACACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTG-AAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTCAAGGCAGAGA-CTCATTTGTACTCTGCAAGAACCATGTCCACACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAG-TGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTCAAGGCAGAGA-CTCATTTGTACTCTGCAAGAACCATGTCCACACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTCAAGGCAGAGACTCATTTGTACTCTGCAAGAACCATGTCCACACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTCAAGGCAGAGACTCATTTGTACTCTGCAAGAACCATGTCCACACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTCAAGGCAGAGACTCATTTGTACTCTGCAAGAACCATGTCCACACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTT-GAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTATGGCCAAACAGGTACGAGC-GCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTATGGCCAAACAGGTACGAGCGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTATGGCCAAACAGGTACGAGCGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTATGGCCAAACAGGTACGAGCGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTATGGCCAAACAGGTACGAGCGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTATGGCCAAACAGGTACGAGCGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTATGGCCAAACAGGTACGAGCGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTATGGCCAAACAGGTACGAGCGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCA-GAGACCCTGAGCCTCGACTGGgt gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagaaGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGCGAGA-CCTGACCCTTGATTGGgtgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagaaGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGCGAGACCTGACCCTTGATTGGgtgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGCGAGACCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCA-GAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGCGAGA-CCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCC---AGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGCGAGA---CCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGCGAGACCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGCGAGACCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGCGAGACCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTG-CTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCCTACGCTCTG-GGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGAtggtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCCTACGCTCTGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGAtggtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCCTACGCTCTGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGC-TGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCCTACGCTCT-GGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTG-CTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCCTACGCTCT-GGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCCTACGCTCTGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCCTACGCTCTGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCCTACGCTCTGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTG-GGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTACGGGGCCTTGG-ATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTACGGGGCCTTGGATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTACGGGGCCTTGGATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTG-GGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTACGGGGCCTTGG-ATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTACGGGGCCTTGGATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTACGGGGCCTTGGATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTACGGGGCCTTGGATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from GeneWise --------------------------------------------------CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG GATTATGGGTCAAATTTACTTCCCAGCTCTATCTGCCCCGCCACCCCCAGCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTACGGGGCCTTGGATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa #### Eml3_ID2512_11 --> 0 - 0 Original Alignment AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCC-CGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACCGGA-GCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from CESAR AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACCGGAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Spaln_aa2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACCGGAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Spaln_nt2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACCGGAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Pairagon AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACCGGAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Exonerate_protein2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACCGGAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Exonerate_coding2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACCGGAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from GeneWise AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACCGGAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCA-GATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCACGATT-GAGGACGACAGGCAGGGGAGGAGCAAAAggtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCACGATTGAGGACGACAGGCAGGGGAGGAGCAAAAggtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCACGATTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCACGATTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCACGATTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCACGATTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCACGATTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCACGATTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGG-GCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTCGCCATTG-TGAAGGACTTGGCTCTGAACTACTGGTGGGGACCACAAAGAATGCATTACTGAGAGCAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttaggtgcctcttcctcaccttcagGGACATACAGATGAGC Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTCGCCATTGTGAAGGACTTGGCTCTGAACTACTGGTGGGGACCACAAAGAATGCATTACTGAGAGCAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttaatagtctcttatcttctttaagGGACATACAGATGAGC Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTCGCCATTGTGAAGGACTTGGCTCTGAACTACTGGTGGGGACCACAAAGAATGCATTACTGAGAGCAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttaggtgcctcttcctcaccttcagGGACATACAGATGAGC Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGG-GCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATC----------------------------------CAGGGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTCGCCATTG-TGAAGGACTTGGCTCTGAACTACTGGTGGGGACCACAAAGAATGCATTACTGAGAGCAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGGTAAATACTTTAGGTGCCTCTTCCTCACCTTCAGGGACATACAGATGAGC Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAG-GGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTCGCCATTG-TGAAGGACTTGGCTCTGAACTACTGGTGGGGACCACAAAGAATGCATTACTGAGAGCAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttaggtgcctcttcctcaccttcagGGACATACAGATGAGC Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTCGCCATTGTGAAGGACTTGGCTCTGAACTACTGGTGGGGACCACAAAGAATGCATTACTGAGAGCAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttaggtgcctcttcctcaccttcagGGACATACAGATGAGC Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTCGCCATTGTGAAGGACTTGGCTCTGAACTACTGGTGGGGACCACAAAGAATGCATTACTGAGAGCAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttaggtgcctcttcctcaccttcagGGACATACAGATGAGC Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTCGCCATTGTGAAGGACTTGGCTCTGAACTACTGGTGGGGACCACAAAGAATGCATTACTGAGAGCAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttaggtgcctcttcctcaccttcagGGACATACAGATGAGC #### Eml3_ID2516_15 --> 0 - 0 Original Alignment CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACC-TGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaagtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCCTTTGGCC-TGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from CESAR CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaaatactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCCTTTGGCCTGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Spaln_aa2Genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaagtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCCTTTGGCCTGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Spaln_nt2Genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaagtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCCTTTGGCCTGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Pairagon CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaagtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCCTTTGGCCTGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Exonerate_protein2genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaagtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCCTTTGGCCTGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Exonerate_coding2genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaagtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCCTTTGGCCTGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from GeneWise CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaagtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCCTTTGGCCTGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAG-CTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctctatgctccaccctttcccggttgcaggTGGTTGGTCTTGGACACAGAGACCAGGGAAATTGTATCTGATGTCACGGATGGCAATGAGCAACCTCTCAG-TGTCCGGTACAGCCCAggtatgtatgcttcccctggcctgaatcctgccctgagtcctgccttgttc Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctctatgctccaccctttcccggttgcaggTGGTTGGTCTTGGACACAGAGACCAGGGAAATTGTATCTGATGTCACGGATGGCAATGAGCAACCTCTCAGTGTCCGGTACAGCCCAggtatgtatgcttcccctggcctgaatcctgccctgagtcctgccttgttc Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatgctccaccctttcccggttgcagGTGGTTGGTCTTGGACACAGAGACCAGGGAAATTGTATCTGATGTCACGGATGGCAATGAGCAACCTCTCAGTGTCCGGTACAGCCCAGgtatgtatgcttcccctggcctgaatcctgccctgagtcctgccttgttc Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGC-TCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatgctccaccctttcccggttgcagGTGGTTGGTCTTGGACACAGAGACCAGGGAAATTGTATCTGATGTCACGGATGGCAATGAGCAACCTCTCAG-TGTCCGGTACAGCCCAGgtatgtatgcttcccctggcctgaatcctgccctgagtcctgccttgttc Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAG-CTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatgctccaccctttcccggttgcagGTGGTTGGTCTTGGACACAGAGACCAGGGAAATTGTATCTGATGTCACGGATGGCAATGAGCAACCTCTCAG-TGTCCGGTACAGCCCAGgtatgtatgcttcccctggcctgaatcctgccctgagtcctgccttgttc Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatgctccaccctttcccggttgcagGTGGTTGGTCTTGGACACAGAGACCAGGGAAATTGTATCTGATGTCACGGATGGCAATGAGCAACCTCTCAGTGTCCGGTACAGCCCAGgtatgtatgcttcccctggcctgaatcctgccctgagtcctgccttgttc Alignment from Exonerate_coding2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatgctccaccctttcccggttgcagGTGGTTGGTCTTGGACACAGAGACCAGGGAAATTGTATCTGATGTCACGGATGGCAATGAGCAACCTCTCAGTGTCCGGTACAGCCCAGgtatgtatgcttcccctggcctgaatcctgccctgagtcctgccttgttc Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatgctccaccctttcccggttgcagGTGGTTGGTCTTGGACACAGAGACCAGGGAAATTGTATCTGATGTCACGGATGGCAATGAGCAACCTCTCAGTGTCCGGTACAGCCCAGgtatgtatgcttcccctggcctgaatcctgccctgagtcctgccttgttc #### Eml3_ID2522_21 --> 2 - 0 Original Alignment gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGAC-GACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggtgccagaggattaatgaaaagtgtccctccctccctcctcttcaggtGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCCCACAATGAACGGGTGGTAGCTGTTGCAGATCGATTGCT-TAAAGTGCATGTCTTTCAGTATCCATGCGCTCGGGCCAAAgtaggtctccatgagcccattgggcccaggaacaaacagttgcagttact Alignment from CESAR gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggtgccagaggattaatgaaaagtgtccctccctccctcctcttcaggtGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCCCACAATGAACGGGTGGTAGCTGTTGCAGATCGATTGCTTAAAGTGCATGTCTTTCAGTATCCATGCGCTCGGGCCAAAgtaggtctccatgagcccattgggcccaggaacaaacagttgcagttact Alignment from Spaln_aa2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggtgccagaggattaatgaaaagtgtccctccctccctcctcttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCCCACAATGAACGGGTGGTAGCTGTTGCAGATCGATTGCTTAAAGTGCATGTCTTTCAGTATCCATGCGCTCGGGCCAAAgtaggtctccatgagcccattgggcccaggaacaaacagttgcagttact Alignment from Spaln_nt2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggtgccagaggattaatgaaaagtgtccctccctccctcctcttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCCCACAATGAACGGGTGGTAGCTGTTGCAGATCGATTGCTTAAAGTGCATGTCTTTCAGTATCCATGCGCTCGGGCCAAAgtaggtctccatgagcccattgggcccaggaacaaacagttgcagttact Alignment from Pairagon GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggtgccagaggattaatgaaaagtgtccctccctccctcctcttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCCCACAATGAACGGGTGGTAGCTGTTGCAGATCGATTGCTTAAAGTGCATGTCTTTCAGTATCCATGCGCTCGGGCCAAAgtaggtctccatgagcccattgggcccaggaacaaacagttgcagttact Alignment from Exonerate_protein2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggtgccagaggattaatgaaaagtgtccctccctccctcctcttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCCCACAATGAACGGGTGGTAGCTGTTGCAGATCGATTGCTTAAAGTGCATGTCTTTCAGTATCCATGCGCTCGGGCCAAAgtaggtctccatgagcccattgggcccaggaacaaacagttgcagttact Alignment from Exonerate_coding2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggtgccagaggattaatgaaaagtgtccctccctccctcctcttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCCCACAATGAACGGGTGGTAGCTGTTGCAGATCGATTGCTTAAAGTGCATGTCTTTCAGTATCCATGCGCTCGGGCCAAAgtaggtctccatgagcccattgggcccaggaacaaacagttgcagttact Alignment from GeneWise GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggtgccagaggattaatgaaaagtgtccctccctccctcctcttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCCCACAATGAACGGGTGGTAGCTGTTGCAGATCGATTGCTTAAAGTGCATGTCTTTCAGTATCCATGCGCTCGGGCCAAAgtaggtctccatgagcccattgggcccaggaacaaacagttgcagttact #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACC-CGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcaggtGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGAACCTACACCCTGGC-TGGCTACATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcaggtGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGAACCTACACCCTGGCTGGCTACATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcagGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGAACCTACACCCTGGCTGGCTACATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcagGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGAACCTACACCCTGGCTGGCTACATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcagGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGAACCTACACCCTGGCTGGCTACATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcagGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGAACCTACACCCTGGCTGGCTACATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Exonerate_coding2genome GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcaGGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGAACCTACACCCTGGCTGGCTACATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from GeneWise GCACCACCGGTGAGGTACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG catgggttgcaggcaactcttg------CCCTCACCCCTCTCTACTTCAGGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGAACCTACACCCTGGCTGGCTACATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCT-GCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTCGCCTGGCTAA-ACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTCGCCTGGCTAAACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTCGCCTGGCTAAACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTCGCCTGGCTAAACTATGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCT-GCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTCGCCTGGCT-AAACTATGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTCGCCTGGCTAAACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTCGCCTGGCTAAACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTCGCCTGGCTAAACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACC---TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATCGACTTTG-GCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATT-GATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTCGATCCAG-TCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTCGATCCAGTCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTCGATCCAGTCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTCGATCCAGTCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGA-----CCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATT-----CGATCCAGTCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTCGATCCAGTCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTCGATCCAGTCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTCGATCCAGTCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAAC-TGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACCTGGT-CAGTGGACACCTAAATTTCCAGATTGAACACcagtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACCTGGTCAGTGGACACCTAAATTTCCAGATTGAACACcagtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACCTGGTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACCTGGTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACCTGGTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACCTGGTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACCTGGTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACCTGGTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCG-CGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta tatgtagcagtatgtaagcccctatacattctgctccttctttctttcagtGTCTTCCCCACAATACCTCCACCACAATT-CCATAAGGTGACACCGGTAGTACAATCCCTATGTGCCAAATATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaagtatgaacacttagctgacagtagtgaagtgagcatatgacaagtg Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta tatgtagcagtatgtaagcccctatacattctgctccttctttctttcagtGTCTTCCCCACAATACCTCCACCACAATTCCATAAGGTGACACCGGTAGTACAATCCCTATGTGCCAAATATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaagtatgaacacttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA tatgtagcagtatgtaagcccctatacattctgctccttctttctttcagTGTCTTCCCCACAATACCTCCACCACAATTCCATAAGGTGACACCGGTAGTACAATCCCTATGTGCCAAATATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaagtatgaacacttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA tatgtagcagtatgtaagcccctatacattctgctccttctttctttcagTGTCTTCCCCACAATACCTCCACCACAATTCCATAAGGTGACACCGGTAGTACAATCCCTATGTGCCAAATATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaagtatgaacacttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA tatgtagcagtatgtaagcccctatacattctgctccttctttctttcagTGTCTTCCCCACAATACCTCCACCACAATTCCATAAGGTGACACCGGTAGTACAATCCCTATGTGCCAAATATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaagtatgaacacttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA tatgtagcagtatgtaagcccctatacattctgctccttctttctttcagTGTCTTCCCCACAATACCTCCACCACAATTCCATAAGGTGACACCGGTAGTACAATCCCTATGTGCCAAATATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaagtatgaacacttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT tatgtagcagtatgtaagcccctatacattctgctccttctttctttcagTGTCTTCCCCACAATACCTCCACCACAATTCCATAAGGTGACACCGGTAGTACAATCCCTATGTGCCAAATATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaagtatgaacacttagctgacagtagtgaagtgagcatatgacaagtg Alignment from GeneWise CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA tatgtagcagtatgtaagcccctatacattctgctccttctttctttcagTGTCTTCCCCACAATACCTCCACCACAATTCCATAAGGTGACACCGGTAGTACAATCCCTATGTGCCAAATATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaagtatgaacacttagctgacagtagtgaagtgagcatatgacaagtg #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTT-TTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTCTTTCTGT-CTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTCGTTGTGaggtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTCTTTCTGTCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTCGTTGTGaggtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTCTTTCTGTCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTCTTTCTGTCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTCTTTCTGTCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTCTTTCTGTCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTCTTTCTGTCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTCTTTCTGTCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTG-TTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacccctttgactacattcactaacaacttgaattcctcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACCTTTATA-CAAACTTCTTGAGCGAATCCAGCGACCGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtacgtaagtataaacatgaatatagtatagcatcacttacgtcttcttt Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTG---TTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacccctttgactacattcactaacaacttgaattcctcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACCTTTATAC---AAACTTCTTGAGCGAATCCAGCGACCGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtacgtaagtataaacatgaatatagtatagcatcacttacgtcttcttt Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacccctttgactacattcactaacaacttgaattcctcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACCTTTATACAAACTTCTTGAGCGAATCCAGCGACCGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtacgtaagtataaacatgaatatagtatagcatcacttacgtcttcttt Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGT-TCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCC------TGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacccctttgactacattcactaacaacttgaattcctcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACCTTTATA-CAAACTTCTTGAGCGAATCCAGCGACCGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtacgtaagtataaacatgaatatagtatagcatcacttacgtcttcttt Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATAC-------CAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacccctttgactacattcactaacaacttgaattcctcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAG-------TACCTTTATACAAACTTCTTGAGCGAATCCAGCGACCGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtacgtaagtataaacatgaatatagtatagcatcacttacgtcttcttt Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacccctttgactacattcactaacaacttgaattcctcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACCTTTATACAAACTTCTTGAGCGAATCCAGCGACCGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtacgtaagtataaacatgaatatagtatagcatcacttacgtcttcttt Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacccctttgactacattcactaacaacttgaattcctcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACCTTTATACAAACTTCTTGAGCGAATCCAGCGACCGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtacgtaagtataaacatgaatatagtatagcatcacttacgtcttcttt Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacccctttgactacattcactaacaacttgaattcctcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACCTTTATACAAACTTCTTGAGCGAATCCAGCGACCGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtacgtaagtataaacatgaatatagtatagcatcacttacgtcttcttt #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCC-CAAAAGGTTCTTCGTTGGTGTTACGGAACCCCAGCTGATGCAAacgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTCGTTGGTGTTACGGAACCCCAGCTGATGCAAacgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTCGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCC-CAAAAGGTTCTTCGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCG-CCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCC-CAAAAGGTTCTTCGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTCGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTCGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCCAAAAGGTTCTTCGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAG-ACGGAAGTGCATAAAGTGGTCAACag tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagaGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGCACAGAAG-GCATAAAGTCCTCAACaggtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagaGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGCACAGAAGGCATAAAGTCCTCAACaggtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGCACAGAAGGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAG-ACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGCACAGAAG-GCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAG-ACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGCACAGAAG-GCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGCACAGAAGGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGCACAGAAGGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGCACAGAAGGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGGTTGTTG-ACCATCCTTGTTTTGTTAATTCCACTTg tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacaggtCCCAGAAATTGCCTATGGTTGTTGCACCATCCTTG-TTTGTTGATTCCACTTggtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTG-ACCATCCTTGTTTTGTTAATTCCACTTg tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacaggtCCCAGAAATTGCCTATGGTTGTTGCACCATCCTTG-TTTGTTGATTCCACTTggtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTTGTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTTGTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTG-ACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTTG-TTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Exonerate_protein2genome tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacaggtcccagaaattgcctatggttgttgcaccatccttgtttgttgattccacttggtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTTGTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTTGTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc #### Fau_ID1403_3 --> 2 - 0 Original Alignment gtAAAGTTCACGGTTCCCTGGCT-CGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttaggtATAGTTCATGGCTCCCTGGCCCCGAG-TGGAAAAGTAAGAGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from CESAR gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttaggtATAGTTCATGGCTCCCTGGCCCCGAGTGGAAAAGTAAGAGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Spaln_aa2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCCGAGTGGAAAAGTAAGAGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Spaln_nt2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCCGAGTGGAAAAGTAAGAGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Pairagon GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCCGAGTGGAAAAGTAAGAGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Exonerate_protein2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCCGAGTGGAAAAGTAAGAGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Exonerate_coding2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCCGAGTGGAAAAGTAAGAGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from GeneWise GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCCGAGTGGAAAAGTAAGAGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCAC-TTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagaCTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACCTTGGCCA-GTTACGCCGCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagaCTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACCTTGGCCAGTTACGCCGCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACCTTGGCCAGTTACGCCGCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCAC-TTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACCTTGGCCA-GTTACGCCGCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACCTTGGCCAGTTACGCCGCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACCTTGGCCAGTTACGCCGCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACCTTGGCCAGTTACGCCGCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACCTTGGCCAGTTACGCCGCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt #### Fgf8_ID9567_2 --> 1 - 0 Original Alignment gCTGTTGCACTTG-CTGGTTCTCTGCCTCCAAGCCCAG ccccttctgctccttgagccacatcccgaaactttgtgttttaaattcagaCTTCTGCAATTGCTTAGTTT-CTGCCTCCAGGCCCAAgtgagtagtgcactcaagtgatgagtggaaatcaagaagtgtcaggacgg Alignment from CESAR gCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG ccccttctgctccttgagccacatcccgaaactttgtgttttaaattcagaCTTCTGCAATTGCTTAGTTTCTGCCTCCAGGCCCAAgtgagtagtgcactcaagtgatgagtggaaatcaagaagtgtcaggacgg Alignment from Spaln_aa2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG ccccttctgctccttgagccacatcccgaaactttgtgttttaaattcagACTTCTGCAATTGCTTAGTTTCTGCCTCCAGGCCCAAgtgagtagtgcactcaagtgatgagtggaaatcaagaagtgtcaggacgg Alignment from Spaln_nt2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG ccccttctgctccttgagccacatcccgaaactttgtgttttaaattcagACTTCTGCAATTGCTTAGTTTCTGCCTCCAGGCCCAAgtgagtagtgcactcaagtgatgagtggaaatcaagaagtgtcaggacgg Alignment from Pairagon GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG ccccttctgctccttgagccacatcccgaaactttgtgttttaaattcagACTTCTGCAATTGCTTAGTTTCTGCCTCCAGGCCCAAgtgagtagtgcactcaagtgatgagtggaaatcaagaagtgtcaggacgg Alignment from Exonerate_protein2genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG ccccttctgctccttgagccacatcccgaaactttgtgttttaaattcagACTTCTGCAATTGCTTAGTTTCTGCCTCCAGGCCCAAgtgagtagtgcactcaagtgatgagtggaaatcaagaagtgtcaggacgg Alignment from Exonerate_coding2genome ccccttctgctccttgagccacatcccgaaactttgtgttttaaattcagacttctgcaattgcttagtttctgcctccaggcccaagtgagtagtgcactcaagtgatgagtggaaatcaagaagtgtcaggacgg Alignment from GeneWise ccccttctgctccttgagccacatcccgaaactttgtgttttaaattcagacttctgcaattgcttagtttctgcctccaggcccaagtgagtagtgcactcaagtgatgagtggaaatcaagaagtgtcaggacgg #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAA-AAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagatagataaagagcatacctgatggcttcctgtctccaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAACAGGCTGC-GCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagatagataaagagcatacctgatggcttcctgtctccaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAACAGGCTGCGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAACAGGCTGCGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAG-CTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAACAGGCTGC-GCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAAC-AGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAACAGGCTGC-GCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAACAGGCTGCGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAACAGGCTGCGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAACAGGCTGCGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGAC-TTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag gaatatccaagatgttttatgcatattctaatcatatattctctccccagacCCTCAGGTGGATGACATGGATGTTGACCTTAG-TAAAGAATTTCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGaggtgagcgtgggatacttgggagccgaggttactacactcagtctacagaa Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag gaatatccaagatgttttatgcatattctaatcatatattctctccccagacCCTCAGGTGGATGACATGGATGTTGACCTTAGTAAAGAATTTCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGaggtgagcgtgggatacttgggagccgaggttactacactcagtctacagaa Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gaatatccaagatgttttatgcatattctaatcatatattctctccccagACCCTCAGGTGGATGACATGGATGTTGACCTTAGTAAAGAATTTCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagccgaggttactacactcagtctacagaa Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gaatatccaagatgttttatgcatattctaatcatatattctctccccagACCCTCAGGTGGATGACATGGATGTTGACCTTAGTAAAGAATTTCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagccgaggttactacactcagtctacagaa Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gaatatccaagatgttttatgcatattctaatcatatattctctccccagACCCTCAGGTGGATGACATGGATGTTGACCTTAGTAAAGAATTTCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagccgaggttactacactcagtctacagaa Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gaatatccaagatgttttatgcatattctaatcatatattctctccccagACCCTCAGGTGGATGACATGGATGTTGACCTTAGTAAAGAATTTCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagccgaggttactacactcagtctacagaa Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gaatatccaagatgttttatgcatattctaatcatatattctctccccagACCCTCAGGTGGATGACATGGATGTTGACCTTAGTAAAGAATTTCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagccgaggttactacactcagtctacagaa Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gaatatccaagatgttttatgcatattctaatcatatattctctccccagACCCTCAGGTGGATGACATGGATGTTGACCTTAGTAAAGAATTTCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagccgaggttactacactcagtctacagaa #### Fkbp2_ID1945_4 --> 2 - 1 Original Alignment ggTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAg gtGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttaggtTATGGGGAATGGGGACGCCC-CCCAAAGATCCCAggtaaaacccctaccactatgcctcttcttggcttggcaggtGGAGCAACC Alignment from CESAR ggTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAg gtGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttaggtTATGGGGAATGGGGACGCCCCCCAAAGATCCCAggtaaaacccctaccactactattttacttatatttataggtGGAGCAACC Alignment from Spaln_aa2Genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaaaacccctaccactatgcctcttcttggcttggcagGTGGAGCAACC Alignment from Spaln_nt2Genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaaaacccctaccactatgcctcttcttggcttggcagGTGGAGCAACC Alignment from Pairagon GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaaaacccctaccactatgcctcttcttggcttggcagGTGGAGCAACC Alignment from Exonerate_protein2genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaaaacccctaccactatgcctcttcttggcttggcagGTGGAGCAACC Alignment from Exonerate_coding2genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaaaacccctaccactatgcctcttcttggcttggcagGTGGAGCAACC Alignment from GeneWise GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAGGT---------------------------------------GGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGGTAAAACCCCTACCACTATGCCTCTTCTTGGCTTGGCAGGTGGAGCAACC #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTC-TCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTG-CACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGgggtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGgggtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTA-CTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGC-GCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat #### Gal_ID62_4 --> 2 - 1 Original Alignment gaAGTGTTGATGTGCCCCTGCCTGAGAGCAAC-ATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagggAGCGTTGATGTGCCCCTGCCTGAAAGTATCCATTGTTC-TACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAggttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from CESAR gaAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagggAGCGTTGATGTGCCCCTGCCTGAAAGTATCCATTGTTCTACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAggttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Spaln_aa2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTGAAAGTATCCATTGTTCTACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Spaln_nt2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTGAAAGTATCCATTGTTCTACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Pairagon GAAGTGTTGATGTGCCCCTGCCTGAGAGCA-ACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTGAAAGTATCCATTGTTC-TACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Exonerate_protein2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTGAAAGTATCCATTGTTCTACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Exonerate_coding2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTGAAAGTATCCATTGTTCTACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from GeneWise GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTGAAAGTATCCATTGTTCTACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca #### Ganab_ID2468_7 --> 1 - 0 Original Alignment gCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCT-GAAGCAACACCTGGGGATGGTGACAAG caactgccatcctcacttcactttaggggtggtgtctcactgttttgtaggCAAGAATCAAAAGACCCCGCTGAAGGCAATGGGGCCCAGCCCCGAGGCGA-ACCTGGGGATGGTGACAAGgtaagccaaaatgtcagatggttgagggtggccttgagtctgcttgagag Alignment from CESAR gCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG caactgccatcctcacttcactttaggggtggtgtctcactgttttgtaggCAAGAATCAAAAGACCCCGCTGAAGGCAATGGGGCCCAGCCCCGAGGCGAACCTGGGGATGGTGACAAGgtaagccaaaatgtcagatggttgagggtggccttgagtctgcttgagag Alignment from Spaln_aa2Genome GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG caactgccatcctcacttcactttaggggtggtgtctcactgttttgtagGCAAGAATCAAAAGACCCCGCTGAAGGCAATGGGGCCCAGCCCCGAGGCGAACCTGGGGATGGTGACAAGgtaagccaaaatgtcagatggttgagggtggccttgagtctgcttgagag Alignment from Spaln_nt2Genome GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG caactgccatcctcacttcactttaggggtggtgtctcactgttttgtagGCAAGAATCAAAAGACCCCGCTGAAGGCAATGGGGCCCAGCCCCGAGGCGAACCTGGGGATGGTGACAAGgtaagccaaaatgtcagatggttgagggtggccttgagtctgcttgagag Alignment from Pairagon GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG caactgccatcctcacttcactttaggggtggtgtctcactgttttgtagGCAAGAATCAAAAGACCCCGCTGAAGGCAATGGGGCCCAGCCCCGAGGCGAACCTGGGGATGGTGACAAGgtaagccaaaatgtcagatggttgagggtggccttgagtctgcttgagag Alignment from Exonerate_protein2genome GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG caactgccatcctcacttcactttaggggtggtgtctcactgttttgtagGCAAGAATCAAAAGACCCCGCTGAAGGCAATGGGGCCCAGCCCCGAGGCGAACCTGGGGATGGTGACAAGgtaagccaaaatgtcagatggttgagggtggccttgagtctgcttgagag Alignment from Exonerate_coding2genome GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG caactgccatcctcacttcactttaggggtggtgtctcactgttttgtagGCAAGAATCAAAAGACCCCGCTGAAGGCAATGGGGCCCAGCCCCGAGGCGAACCTGGGGATGGTGACAAGgtaagccaaaatgtcagatggttgagggtggccttgagtctgcttgagag Alignment from GeneWise GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG caactgccatcctcacttcactttaggggtggtgtctcactgttttgtagGCAAGAATCAAAAGACCCCGCTGAAGGCAATGGGGCCCAGCCCCGAGGCGAACCTGGGGATGGTGACAAGgtaagccaaaatgtcagatggttgagggtggccttgagtctgcttgagag #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACC-CAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCCAAG-AAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtaagaaattggcaggcctcaatagtaacctcatcctgggctccctgtag Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCCAAGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtaagaaattggcaggcctcaatagtaacatttcctttctctggtcacag Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCCAAGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaacctcatcctgggctccctgtag Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCCAAGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaacctcatcctgggctccctgtag Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCCAAGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaacctcatcctgggctccctgtag Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCCAAGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaacctcatcctgggctccctgtag Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCCAAGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaacctcatcctgggctccctgtag Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCCAAGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaacctcatcctgggctccctgtag #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCT-GACAGCCTGAGACTGAAGGTCACTga gtaaggaattggcaggcctcaatagtaacatttcctttctctggtcacaggtCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTCGACAGCTTGA-ACTGAAGGTTACTgagtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from CESAR gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga gtaagaaattggcaggcctcaatagtaacatttcctttctctggtcacaggtCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTCGACAGCTTGAACTGAAGGTTACTgagtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaaggaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTCGACAGCTTGAACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCT-GACAGCCTGAGACTGAAGGTCACTGA gtaaggaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTCGACAGCTTGA-ACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Pairagon GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCT-GACAGCCTGAGACTGAAGGTCACTGA gtaaggaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTCGACAGCTTGA-ACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaaggaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTCGACAGCTTGAACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaaggaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTCGACAGCTTGAACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from GeneWise GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaaggaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTCGACAGCTTGAACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt #### Ganab_ID2472_11 --> 0 - 1 Original Alignment ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGG-GAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGCGAGACTCCCC-GACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from CESAR ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGCGAGACTCCCCGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Spaln_aa2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGCGAGACTCCCCGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Spaln_nt2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGCGAGACTCCCCGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Pairagon ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGG-GAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGCGAGACTCC-CCGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Exonerate_protein2genome GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacATGTAGACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGCGAGACTCCCCGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Exonerate_coding2genome GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacATGTAGACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGCGAGACTCCCCGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from GeneWise ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGCGAGACTCCCCGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGG-GATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGACGATGGCT-TGATTATGAGGGCTGGTGTTGGCCAggtatgatctgcggtcaatgaaatttttctgcctgtctgcttccctcaggc Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGACGATGGCTTGATTATGAGGGCTGGTGTTGGCCAggtatgatctgcggtcaatgaaattttgtctgtcctcctccacccacaggc Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGACGATGGCTTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaatttttctgcctgtctgcttccctcagGC Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATCAAGGT------AGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGG-GATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAAA---------------TTAAGACTCGACGATGGCT-TGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaatttttctgcctgtctgcttccctcagGC Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGG-GATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAAA---------------TTAAGACTCGACGATGGCT-TGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaatttttctgcctgtctgcttccctcagGC Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGACGATGGCTTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaatttttctgcctgtctgcttccctcagGC Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGACGATGGCTTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaatttttctgcctgtctgcttccctcagGC Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGACGATGGCTTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaatttttctgcctgtctgcttccctcagGC #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCAT-AACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGATATCCATCAATTTTT-TGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGATATCCATCAATTTTTTGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGATATCCATCAATTTTTTGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGATATCCATCAATTTTTTGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGATATCCATCAATTTTTTGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGATATCCATCAATTTTTTGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGATATCCATCAATTTTTTGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGATATCCATCAATTTTTTGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGT-AGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTCAGGGCTT-CTCCTCAGGTTTCCAGCGCTTTggtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTCAGGGCTTCTCCTCAGGTTTCCAGCGCTTTggtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTCAGGGCTTCTCCTCAGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTCAGGGCTTCTCCTCAGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTCAGGGCTTCTCCTCAGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTCAGGGCTTCTCCTCAGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTCAGGGCTTCTCCTCAGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTCAGGGCTTCTCCTCAGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGC-GGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGC-GGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTG-TATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGCTATCTAC-AGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGCTATCTACAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGCTATCTACAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGCTATCTACAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTG-TATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGCTATCTA-CAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGCTATCTACAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGCTATCTACAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGCTATCTACAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa #### Ganab_ID2484_23 --> 0 - 2 Original Alignment GGTACTGCCCAA-GGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag cagaccccatcgtttgtttgggttccattctctctctctctctctctcagGGTACTGCACAGCGGAG-GCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTCTCTGGCAGCACACTGGTGTCTaggtaagtggtgactcttatgccctgcctccagggttttgctgtgtgtactc Alignment from CESAR GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag cagaccccatcgtttgtttgggttccattctctctctctctctctctcagGGTACTGCACAGCGGAGGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTCTCTGGCAGCACACTGGTGTCTaggtaagtggtgactcttatgccctgcctccagggttttgctgtgtgtcatg Alignment from Spaln_aa2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcgtttgtttgggttccattctctctctctctctctctcagGGTACTGCACAGCGGAGGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagtggtgactcttatgccctgcctccagggttttgctgtgtgtactc Alignment from Spaln_nt2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcgtttgtttgggttccattctctctctctctctctctcagGGTACTGCACAGCGGAGGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagtggtgactcttatgccctgcctccagggttttgctgtgtgtactc Alignment from Pairagon GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcgtttgtttgggttccattctctctctctctctctctcagGGTACTGCACAGCGGAGGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagtggtgactcttatgccctgcctccagggttttgctgtgtgtactc Alignment from Exonerate_protein2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcgtttgtttgggttccattctctctctctctctctctcagGGTACTGCACAGCGGAGGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagtggtgactcttatgccctgcctccagggttttgctgtgtgtactc Alignment from Exonerate_coding2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcgtttgtttgggttccattctctctctctctctctctcagGGTACTGCACAGCGGAGGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagtggtgactcttatgccctgcctccagggttttgctgtgtgtactc Alignment from GeneWise GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcgtttgtttgggttccattctctctctctctctctctcagGGTACTGCACAGCGGAGGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagtggtgactcttatgccctgcctccagggttttgctgtgtgtactc #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTG-ACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGCACTTTTA-TGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGCACTTTTATGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGCACTTTTATGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGCACTTTTATGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGCACTTTTATGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGCACTTTTATGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGCACTTTTATGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGCACTTTTATGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACAT-GGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccacaagtttttggtgaatgctaagccttccttgtgttacagctGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGAGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACGGACCATCGGAAAGCCAG-GTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtgaggatccagtatattctttctggctgagcctcccagtcaatgtttta Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccacaagtttttggtgaatgctaagccttccttgtgttacagctGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGAGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACGGACCATCGGAAAGCCAGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtgaggatccagtatattctttctggctgagcctcccagtcaatgtttta Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaagtttttggtgaatgctaagccttccttgtgttacagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGAGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACGGACCATCGGAAAGCCAGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgaggatccagtatattctttctggctgagcctcccagtcaatgtttta Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACAT-GGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaagtttttggtgaatgctaagccttccttgtgttacagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGAGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACGGACCATCGGAAAGCCA-GGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgaggatccagtatattctttctggctgagcctcccagtcaatgtttta Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACAT-GGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaagtttttggtgaatgctaagccttccttgtgttacagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGAGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACGGACCATCGGAAAGCCA-GGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgaggatccagtatattctttctggctgagcctcccagtcaatgtttta Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaagtttttggtgaatgctaagccttccttgtgttacagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGAGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACGGACCATCGGAAAGCCAGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgaggatccagtatattctttctggctgagcctcccagtcaatgtttta Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaagtttttggtgaatgctaagccttccttgtgttacagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGAGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACGGACCATCGGAAAGCCAGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgaggatccagtatattctttctggctgagcctcccagtcaatgtttta Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaagtttttggtgaatgctaagccttccttgtgttacagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGAGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACGGACCATCGGAAAGCCAGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgaggatccagtatattctttctggctgagcctcccagtcaatgtttta #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagcaGACAAAAAGTTCACCAGGCAAGC-ACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagcaGACAAAAAGTTCACCAGGCAAGCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGCAAGCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGCAAGCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGCAAGCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGCAAGCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGCAAGCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGCAAGCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGA-GTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagaGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGCGTGGCCT-AGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagaGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGCGTGGCCTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGCGTGGCCTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGA-GTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGCGTGGCC-TAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGCGTGGCCTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGCGTGGCCTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGCGTGGCCTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGCGTGGCCTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAA-AAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAACAAGA-GATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAACAAGAGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAACAAGAGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAACAAGAGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAACAAGAGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAACAAGAGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAACAAGAGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAACAAGAGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAA-GATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAACGATGCCG-TTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACaggtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAACGATGCCGTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACaggtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAACGATGCCGTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAACGATGCCGTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAA-GATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAACGATGCCG-TTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAACGATGCCGTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAACGATGCCGTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAACGATGCCGTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTA-GAAGCCAGTCTGAATGGTg gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTACGAAG-CAGTCTGAACGACggtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTACGAAGCAGTCTGAACGACggtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTACGAAGCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTACGAAGCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTACGAAGCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTACGAAGCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTACGAAGCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTACGAAGCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTA-CGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGG-CTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTA-CGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGG-CTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga #### Gldc_ID6401_14 --> 0 - 0 Original Alignment GGATCCTGCACCATGAAGCTCAAT-AGCTCCTCCGAACTTGCA ggtcatagcaagcattagtgggtatctcgcctcagctcctctaatttcagGGATCTTGCACCATGAAGCTCAATCAGCT-TTCTGAGCTTGGTgtaaggctcattcatttccatatgattggtagaacataccaatgaaacta Alignment from CESAR GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattagtgggtatctcgcctcagctcctctaatttcagGGATCTTGCACCATGAAGCTCAATCAGCTTTCTGAGCTTGGTgtaaggctcattcatttccatatgattggtagaacataccaatgaaacta Alignment from Spaln_aa2Genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattagtgggtatctcgcctcagctcctctaatttcagGGATCTTGCACCATGAAGCTCAATCAGCTTTCTGAGCTTGGTgtaaggctcattcatttccatatgattggtagaacataccaatgaaacta Alignment from Spaln_nt2Genome GGATCCTGCACCATGAAGCTCAAT-AGCTCCTCCGAACTTGCA ggtcatagcaagcattagtgggtatctcgcctcagctcctctaatttcagGGATCTTGCACCATGAAGCTCAATCAGCT-TTCTGAGCTTGGTgtaaggctcattcatttccatatgattggtagaacataccaatgaaacta Alignment from Pairagon GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattagtgggtatctcgcctcagctcctctaatttcagGGATCTTGCACCATGAAGCTCAATCAGCTTTCTGAGCTTGGTgtaaggctcattcatttccatatgattggtagaacataccaatgaaacta Alignment from Exonerate_protein2genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattagtgggtatctcgcctcagctcctctaatttcagGGATCTTGCACCATGAAGCTCAATCAGCTTTCTGAGCTTGGTgtaaggctcattcatttccatatgattggtagaacataccaatgaaacta Alignment from Exonerate_coding2genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattagtgggtatctcgcctcagctcctctaatttcagGGATCTTGCACCATGAAGCTCAATCAGCTTTCTGAGCTTGGTgtaaggctcattcatttccatatgattggtagaacataccaatgaaacta Alignment from GeneWise GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattagtgggtatctcgcctcagctcctctaatttcagGGATCTTGCACCATGAAGCTCAATCAGCTTTCTGAGCTTGGTgtaaggctcattcatttccatatgattggtagaacataccaatgaaacta #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTT-CACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagtTATCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTACCACA-TATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagtTATCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTACCACATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTACCACATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTACCACATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTACCACATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTACCACATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTACCACATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTACCACATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCC-TATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCCTATTGCT-CTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCCTATTGCTCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCCTATTGCTCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCCTATTGCTCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGG-CCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCCTATTGCT-CTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCCTATTGCTCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCCTATTGCTCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCCTATTGCTCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTC-CGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTC---TTTTGGGAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCCGCG-ACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGGAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCCGCGACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGGAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCCGCGACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCT---TTTGGGAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCCGCGACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCT---TTTGGGAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCCGCGACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGGAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCCGCGACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGGAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCCGCGACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGGAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCCGCGACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGC-CAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttaggCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATGTACTGTGTGCAGTGCTGTCACGCCCAGCGTCAAC-ACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttaggCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATGTACTGTGTGCAGTGCTGTCACGCCCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATGTACTGTGTGCAGTGCTGTCACGCCCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATGTACTGTGTGCAGTGCTGTCACGCCCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCG-CCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATGTACTGTGTGCAGTGCTGTCACGCCCAGCGTCA-ACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATGTACTGTGTGCAGTGCTGTCACGCCCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Exonerate_coding2genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTTGCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG TGTATAGCCTCTGCAGTGAGGGCGTTCATATTAAATCCCCTCTACTTTAGGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATGTACTGTGTGCAGTGCTGTCACGCCCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATGTACTGTGTGCAGTGCTGTCACGCCCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAGGCCAAGGCGAAG-CGTCGGCCAGAGATGAGCCGAGGCtt aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCCGTCGAC-AGCAATGAGCCGAGGGctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from CESAR GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCCGTCGACAGCAATGAGCCGAGGGctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCCGTCGACAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCCGTCGACAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Pairagon GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCCGTCGACAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Exonerate_protein2genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCCGTCGACAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Exonerate_coding2genome aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcaggtggtatttaaggccaaagctaagccgtcgacagcaatgagccgagggctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from GeneWise GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCCGTCGACAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGA-AATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCAATTTTCGACAATGTGG-TGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATtggtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCAATTTTCGACAATGTGGTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATtggtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCAATTTTCGACAATGTGGTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCAATTTTCGACAATGTGGTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGA-AATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCAATTTTCGACAATGTGG-TGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCAATTTTCGACAATGTGGTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCAATTTTCGACAATGTGGTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCAATTTTCGACAATGTGGTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagtgGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGCGGGCAGC-TGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagtgGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGCGGGCAGCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGCGGGCAGCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGCGGGCAGCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGCGGGCAG-CTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGCGGGCAGCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGCGGGCAGCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGCGGGCAGCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAG-ATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagccATGCAAGCTACAGTAGAGCATGA-TGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCATGTTACTATCATGGCCACATGAGCAGTGCAGCAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagccATGCAAGCTACAGTAGAGCATGATGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCATGTTACTATCATGGCCACATGAGCAGTGCAGCAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGCATGATGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCATGTTACTATCATGGCCACATGAGCAGTGCAGCAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGCATGATGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCATGTTACTATCATGGCCACATGAGCAGTGCAGCAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Pairagon CCACGCAAGCCACAGTAGAG-ATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGCATGA-TGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCATGTTACTATCATGGCCACATGAGCAGTGCAGCAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGCATGATGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCATGTTACTATCATGGCCACATGAGCAGTGCAGCAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGCATGATGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCATGTTACTATCATGGCCACATGAGCAGTGCAGCAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGCATGATGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCATGTTACTATCATGGCCACATGAGCAGTGCAGCAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta #### Hoga1_ID8382_5 --> 0 - 1 Original Alignment GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGG-TCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGCTCCGTTG-CTCCCTTCTAGCTAGCTATTCTGTGggtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from CESAR GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGCTCCGTTGCTCCCTTCTAGCTAGCTATTCTGTGggtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Spaln_aa2Genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGCTCCGTTGCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Spaln_nt2Genome GTGACCAGGATTGGACTGATAGT---TCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGCTCCGTTGCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Pairagon GTGACCAGGATTGGACTGATAGT---TCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGCTCCGTTGCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Exonerate_protein2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGCTCCGTTGCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Exonerate_coding2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGCTCCGTTGCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from GeneWise GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGCTCCGTTGCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAG-AGCCGGAGAAATGTCACCATGGTGtc ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtaggGAGAGACTTTTGGACTGGAAGGATTTTTCCTTGGTGAATCAGCTGGAGAA-TGTCACCATGGTAgcgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from CESAR gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtaggGAGAGACTTTTGGACTGGAAGGATTTTTCCTTGGTGAATCAGCTGGAGAATGTCACCATGGTAgcgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagGGAGAGACTTTTGGACTGGAAGGATTTTTCCTTGGTGAATCAGCTGGAGAATGTCACCATGGTAGCgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Spaln_nt2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagGGAGAGACTTTTGGACTGGAAGGATTTTTCCTTGGTGAATCAGCTGGAGAATGTCACCATGGTAGCgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Pairagon GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAA-GAGCCGGAGAAATGTCACCATGGTGTC ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagGGAGAGACTTTTGGACTGGAAGGATTTTTCCTTGGTGAATCAGCTGGAG-AATGTCACCATGGTAGCgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Exonerate_protein2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagGGAGAGACTTTTGGACTGGAAGGATTTTTCCTTGGTGAATCAGCTGGAGAATGTCACCATGGTAGCgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagGGAGAGACTTTTGGACTGGAAGGATTTTTCCTTGGTGAATCAGCTGGAGAATGTCACCATGGTAGCgtaagttcttgattatatattcataggaataatagggctattgaaaattc #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTAC-CGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtgatgtaaaggacaatatctcactgcctcctgccctacaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATGTATCCAGCTCAGCT-CCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACCAAGCCCAAAAACTTATGaagtttgggcgttatgtctgaggatgacacaagtagttattgcactgtgctc Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtgatgtaaaggacaatatctcactgcctcctgccctacaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATGTATCCAGCTCAGCTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACCAAGCCCAAAAACTTATGaagtttgggcgttatgtctgaggatgacacaagtagttattgcactttcatg Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtgatgtaaaggacaatatctcactgcctcctgccctacagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATGTATCCAGCTCAGCTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACCAAGCCCAAAAACTTATGAAgtttgggcgttatgtctgaggatgacacaagtagttattgcactgtgctc Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtgatgtaaaggacaatatctcactgcctcctgccctacagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATGTATCCAGCTCAGCTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACCAAGCCCAAAAACTTATGAAgtttgggcgttatgtctgaggatgacacaagtagttattgcactgtgctc Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTA-CCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtgatgtaaaggacaatatctcactgcctcctgccctacagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATGTATCCAGCTCAGC-TCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACCAAGCCCAAAAACTTATGAAgtttgggcgttatgtctgaggatgacacaagtagttattgcactgtgctc Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtgatgtaaaggacaatatctcactgcctcctgccctacagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATGTATCCAGCTCAGCTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACCAAGCCCAAAAACTTATGAAgtttgggcgttatgtctgaggatgacacaagtagttattgcactgtgctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtgatgtaaaggacaatatctcactgcctcctgccctacagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATGTATCCAGCTCAGCTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACCAAGCCCAAAAACTTATGAAgtttgggcgttatgtctgaggatgacacaagtagttattgcactgtgctc #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAG-GCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGCGCCAGGAGCC-GAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from CESAR AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGCGCCAGGAGCCGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGCGCCAGGAGCCGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAG-GCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGCGCCAGGAGCC-GAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Pairagon AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAG-GCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGCGCCAGGAGCC-GAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGCGCCAGGAGCCGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGCGCCAGGAGCCGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGC-TACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagacCAAGTGCTGCTGTGCCTATT-TGAGTCACCCTGTCCTGCAAGTCAATCTggtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagacCAAGTGCTGCTGTGCCTATTTGAGTCACCCTGTCCTGCAAGTCAATCTggtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCCTATTTGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCCTATTTGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Pairagon ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCCTATTTGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCCTATTTGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCCTATTTGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from GeneWise ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCCTATTTGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTG-CAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACCAGG-AGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACCAGGAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACCAGGAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACCAGGAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACCAGGAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACCAGGAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACCAGGAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACCAGGAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTGCGA-CTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttaggGAGATGCAAGAGAGAGAGAAAGCCTTGAGACCTCCAAAAGG-ACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttaggGAGATGCAAGAGAGAGAGAAAGCCTTGAGACCTCCAAAAGGACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACCTCCAAAAGGACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACCTCCAAAAGGACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACCTCCAAAAGGACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACCTCCAAAAGGACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACCTCCAAAAGGACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACCTCCAAAAGGACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca #### Incenp_ID2608_11 --> 1 - 0 Original Alignment gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGA-GGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from CESAR gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Spaln_aa2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Spaln_nt2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Pairagon GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Exonerate_protein2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Exonerate_coding2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from GeneWise GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTT-CCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCCTGCCC-CGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTggtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCCTGCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTggtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCCTGCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCCTGCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCCTGCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCCTGCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCCTGCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCCTGCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTC-CTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctataggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCT-CCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctataggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCT-CCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCT-CCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGC-CGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCAGGCATC-CCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from CESAR GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCAGGCATCCCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Spaln_aa2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCAGGCATCCCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Spaln_nt2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCAGGCATCCCTTAAGCCATGGTATTTCTCCCCATA---TCAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Pairagon GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCC-GGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCAGGCATC-CCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCAGGCATCCCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCAGGCATCCCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCAGGCATCCCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCCCGTAGG---GCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAAT-TGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCAGCCCGGGTGGAAGCGCAAATCTAACCTGCT-AGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from CESAR AATGGGTCAGCCCGTAGGGCA---GTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCAGCCCGGGTGGAAGCGCAAATCTAACCTGCTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Spaln_aa2Genome AATGGGTCAGCCCGTAGG---GCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCAGCCCGGGTGGAAGCGCAAATCTAACCTGCTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Spaln_nt2Genome AATGGGTCAGCCCGTAGGGCAG---TGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCAGCCCGGGTGGAAGCGCAAATCTAACCTGCTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Pairagon AATGGGTCAGCCCGTAGG---GCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCAGCCCGGGTGGAAGCGCAAATCTAACCTGCTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Exonerate_protein2genome AATGGGTCA---GCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCAGCCCGGGTGGAAGCGCAAATCTAACCTGCTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Exonerate_coding2genome AATGGGTCA---GCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCAGCCCGGGTGGAAGCGCAAATCTAACCTGCTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from GeneWise AATGGGTCAGCC---CGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCAGCCCGGGTGGAAGCGCAAATCTAACCTGCTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGC-CTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCCTACAACCCA-CCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCCTACAACCCACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Spaln_aa2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCCTACAACCCACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCCTACAACCCACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTG-CCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCCTACAACCC-ACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCCTACAACCCACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCCTACAACCCACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCCTACAACCCACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCC-GGCTCTCCCGAAAGAGAGGTG aagattaggaaatctgcagcattccccccttcctgatatttttcttctagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCGCGGCTCCC-CAAAAGGGAGGTGgtgagcgaattgaccatttctgtctccaatctctctgatccaccctcgca Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aagattaggaaatctgcagcattccccccttcctgatatttttcttctagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCGCGGCTCCCCAAAAGGGAGGTGgtgagcgaattgaccatttctgtctccaatctctctgatccaccctcgca Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aagattaggaaatctgcagcattccccccttcctgatatttttcttctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCGCGGCTCCCCAAAAGGGAGGTGgtgagcgaattgaccatttctgtctccaatctctctgatccaccctcgca Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCC-CGGCTCTCCCGAAAGAGAGGTG aagattaggaaatctgcagcattccccccttcctgatatttttcttctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCGCGGCTC-CCCAAAAGGGAGGTGgtgagcgaattgaccatttctgtctccaatctctctgatccaccctcgca Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCC-CGGCTCTCCCGAAAGAGAGGTG aagattaggaaatctgcagcattccccccttcctgatatttttcttctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCGCGGCTC-CCCAAAAGGGAGGTGgtgagcgaattgaccatttctgtctccaatctctctgatccaccctcgca Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aagattaggaaatctgcagcattccccccttcctgatatttttcttctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCGCGGCTCCCCAAAAGGGAGGTGgtgagcgaattgaccatttctgtctccaatctctctgatccaccctcgca Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aagattaggaaatctgcagcattccccccttcctgatatttttcttctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCGCGGCTCCCCAAAAGGGAGGTGgtgagcgaattgaccatttctgtctccaatctctctgatccaccctcgca Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aagattaggaaatctgcagcattccccccttcctgatatttttcttctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCGCGGCTCCCCAAAAGGGAGGTGgtgagcgaattgaccatttctgtctccaatctctctgatccaccctcgca #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAAC-CAGGACAACGAAGATGAGTGGc gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCCAAGATA-TGAAGATGAGTGGcgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from CESAR GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCCAAGATATGAAGATGAGTGGcgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Spaln_aa2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCCAAGATATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Spaln_nt2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCCAAGATATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Pairagon GGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAA-CCAGGACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttaGGGGGAGATAATTGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCCAAGATA-TGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCCAAGATATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Exonerate_coding2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCCAAGATATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from GeneWise GCGGAGGTGGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttag---------GGGGAGATAATTGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCCAAGATATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TCTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCT-CTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg TCCTTGCAGgtactggacagggttattgatgatgccttacctgccctcagTTCAGAGGTGGACCACAAGAATTTGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGCCTCACCCGAAATGCTCCTTG-CCAAGCTGAAGCCTCCGCAACCCTGACGGTACTTACACCAggtaacaattagctctgggtggcaagatgaggcaggagttgggttttaaga Alignment from CESAR TCTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg TCCTTGCAGgtttgtgacagggttattgatgatgccttacctgccctcagTTCAGAGGTGGACCACAAGAATTTGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGCCTCACCCGAAATGCTCCTTGCCAAGCTGAAGCCTCCGCAACCCTGACGGTACTTACACCAggtaacaattagctctgggtggcaagatgaggcaggagttgggttttaaga Alignment from Spaln_aa2Genome TCTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG TCCTTGCAGgtactggacagggttattgatgatgccttacctgccctcagTTCAGAGGTGGACCACAAGAATTTGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGCCTCACCCGAAATGCTCCTTGCCAAGCTGAAGCCTCCGCAACCCTGACGGTACTTACACCAGgtaacaattagctctgggtggcaagatgaggcaggagttgggttttaaga Alignment from Spaln_nt2Genome TCTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG TCCTTGCAGgtactggacagggttattgatgatgccttacctgccctcagTTCAGAGGTGGACCACAAGAATTTGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGCCTCACCCGAAATGCTCCTTGCCAAGCTGAAGCCTCCGCAACCCTGACGGTACTTACACCAGgtaacaattagctctgggtggcaagatgaggcaggagttgggttttaaga Alignment from Pairagon TCTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG TCCTTGCAGgtactggacagggttattgatgatgccttacctgccctcagTTCAGAGGTGGACCACAAGAATTTGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGCCTCACCCGAAATGCTCCTTGCCAAGCTGAAGCCTCCGCAACCCTGACGGTACTTACACCAGgtaacaattagctctgggtggcaagatgaggcaggagttgggttttaaga Alignment from Exonerate_protein2genome TCTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG TCCTTGCAGgtactggacagggttattgatgatgccttacctgccctcagTTCAGAGGTGGACCACAAGAATTTGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGCCTCACCCGAAATGCTCCTTGCCAAGCTGAAGCCTCCGCAACCCTGACGGTACTTACACCAGgtaacaattagctctgggtggcaagatgaggcaggagttgggttttaaga Alignment from Exonerate_coding2genome TCTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG TCCTTGCAGgtactggacagggttattgatgatgccttacctgccctcagTTCAGAGGTGGACCACAAGAATTTGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGCCTCACCCGAAATGCTCCTTGCCAAGCTGAAGCCTCCGCAACCCTGACGGTACTTACACCAGgtaacaattagctctgggtggcaagatgaggcaggagttgggttttaaga Alignment from GeneWise TCTGTGCAG TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG TCCTTGCAGgtactggacagggttattgatgatgccttacctgccctcagTTCAGAGGTGGACCACAAGAATTTGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGCCTCACCCGAAATGCTCCTTGCCAAGCTGAAGCCTCCGCAACCCTGACGGTACTTACACCAGgtaacaattagctctgggtggcaagatgaggcaggagttgggttttaaga #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAG-GACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG ttgaggaaaggtttccctcaagactcattcaccttgtttctcggccccagAAGATGGATAGAATCAAGCGATGGTG-GGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaccgaaatgtgcaagaagggtgggggtctgaaaggttgttctagatcc Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG ttgaggaaaggtttccctcaagactcattcaccttgtttctcggccccagAAGATGGATAGAATCAAGCGATGGTGGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaccgaaatgtgcaagaagggtgggggtctgaaaggttgttctagatcc Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG ttgaggaaaggtttccctcaagactcattcaccttgtttctcggccccagAAGATGGATAGAATCAAGCGATGGTGGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaccgaaatgtgcaagaagggtgggggtctgaaaggttgttctagatcc Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG ttgaggaaaggtttccctcaagactcattcaccttgtttctcggccccagAAGATGGATAGAATCAAGCGATGGTGGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaccgaaatgtgcaagaagggtgggggtctgaaaggttgttctagatcc Alignment from Pairagon AAGATGGACAGAAACAAG-GACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG ttgaggaaaggtttccctcaagactcattcaccttgtttctcggccccagAAGATGGATAGAATCAAGCGATGGTG-GGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaccgaaatgtgcaagaagggtgggggtctgaaaggttgttctagatcc Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG ttgaggaaaggtttccctcaagactcattcaccttgtttctcggccccagAAGATGGATAGAATCAAGCGATGGTGGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaccgaaatgtgcaagaagggtgggggtctgaaaggttgttctagatcc Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG ttgaggaaaggtttccctcaagactcattcaccttgtttctcggccccagAAGATGGATAGAATCAAGCGATGGTGGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaccgaaatgtgcaagaagggtgggggtctgaaaggttgttctagatcc Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG ttgaggaaaggtttccctcaagactcattcaccttgtttctcggccccagAAGATGGATAGAATCAAGCGATGGTGGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaccgaaatgtgcaagaagggtgggggtctgaaaggttgttctagatcc #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGAC-ATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACCATGATGG-CAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACCATGATGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACCATGATGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACCATGATGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGA-CATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACCATGAT-GGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACCATGATGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACCATGATGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from GeneWise ---ATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACCATGATGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGAT-GGCTGTATCACGAAGGAG agcatccacaccaacatgttttagaagagtttgtttgttttgttttttagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATCGGCT-TATCACAAAGGAGgtagtgggccactaatgtgacagattatgctgacatatgtcatcaaacac Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG agcatccacaccaacatgttttagaagagtttgtttgttttgttttttagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATCGGCTTATCACAAAGGAGgtagtgggccactaatgtgacagattatgctgacatatgtcatcaaacac Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG agcatccacaccaacatgttttagaagagtttgtttgttttgttttttagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATCGGCTTATCACAAAGGAGgtagtgggccactaatgtgacagattatgctgacatatgtcatcaaacac Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG agcatccacaccaacatgttttagaagagtttgtttgttttgttttttagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATCGGCTTATCACAAAGGAGgtagtgggccactaatgtgacagattatgctgacatatgtcatcaaacac Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG agcatccacaccaacatgttttagaagagtttgtttgttttgttttttagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATCGGCTTATCACAAAGGAGgtagtgggccactaatgtgacagattatgctgacatatgtcatcaaacac Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG agcatccacaccaacatgttttagaagagtttgtttgttttgttttttagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATCGGCTTATCACAAAGGAGgtagtgggccactaatgtgacagattatgctgacatatgtcatcaaacac Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG agcatccacaccaacatgttttagaagagtttgtttgttttgttttttagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATCGGCTTATCACAAAGGAGgtagtgggccactaatgtgacagattatgctgacatatgtcatcaaacac Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG agcatccacaccaacatgttttagaagagtttgtttgttttgttttttagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATCGGCTTATCACAAAGGAGgtagtgggccactaatgtgacagattatgctgacatatgtcatcaaacac #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATT-TATTCTCAGTTCTTTCCCCAAGGAg agcaccacattctgtgattgtttatattgtttactcttttaattttacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTCTATTCAC-GTTCTTTCCACAAGAGggtgagtggcaggcatccaagaaatctacactgcccacaggctgtacaagt Alignment from CESAR GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg agcaccacattctgtgattgtttatattgtttactcttttaattttacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTCTATTCACGTTCTTTCCACAAGAGggtgagtggcaggcatccaagaaatctacactgcccacaggctgtacaagt Alignment from Spaln_aa2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG agcaccacattctgtgattgtttatattgtttactcttttaattttacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTCTATTCACGTTCTTTCCACAAGAGGgtgagtggcaggcatccaagaaatctacactgcccacaggctgtacaagt Alignment from Spaln_nt2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATT-TATTCTCAGTTCTTTCCCCAAGGAG agcaccacattctgtgattgtttatattgtttactcttttaattttacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTCTATTCAC-GTTCTTTCCACAAGAGGgtgagtggcaggcatccaagaaatctacactgcccacaggctgtacaagt Alignment from Pairagon GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATT-TATTCTCAGTTCTTTCCCCAAGGAG agcaccacattctgtgattgtttatattgtttactcttttaattttacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTCTATTCAC-GTTCTTTCCACAAGAGGgtgagtggcaggcatccaagaaatctacactgcccacaggctgtacaagt Alignment from Exonerate_protein2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG agcaccacattctgtgattgtttatattgtttactcttttaattttacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTCTATTCACGTTCTTTCCACAAGAGGgtgagtggcaggcatccaagaaatctacactgcccacaggctgtacaagt Alignment from Exonerate_coding2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG agcaccacattctgtgattgtttatattgtttactcttttaattttacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTCTATTCACGTTCTTTCCACAAGAGGgtgagtggcaggcatccaagaaatctacactgcccacaggctgtacaagt Alignment from GeneWise GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG agcaccacattctgtgattgtttatattgtttactcttttaattttacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTCTATTCACGTTCTTTCCACAAGAGGgtgagtggcaggcatccaagaaatctacactgcccacaggctgtacaagt #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTC-AAGAATTCTGATGGACTTGGAATAaa agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagacTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCTTATCTTTCAAGA-TGCTGATGGACTTGGAATCaggtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from CESAR atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagacTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCTTATCTTTCAAGATGCTGATGGACTTGGAATCaggtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCTTATCTTTCAAGATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCTTATCTTTCAAGATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Pairagon ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCTTATCTTTCAAGATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCTTATCTTTCAAGATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCTTATCTTTCAAGATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCTTATCTTTCAAGATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGC-TATAATTGCACCATCTTCgc acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCCTACA-TTGCACCATTTCTgtgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCCTACATTGCACCATTTCTgtgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCCTACATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCCTACATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCCTACATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCCTACATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCCTACATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCCTACATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCA-CAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CCAGGAAT-TAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTACCA---GGAATTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTACCA---GGAATTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGT--ACCAGGAATT-AGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA--CCAGGAATT-AGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Exonerate_protein2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtGTGCAGGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CCAGGAATTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Exonerate_coding2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtGTGCAGGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CCAGGAATTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTACCAGGA---ATTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCA-GAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagaTTGTCGCTGTGTGATCTTGCTGGTTCACGAACAAA-CATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAaagtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagaTTGTCGCTGTGTGATCTTGCTGGTTCACGAACAAACATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAaagtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCACGAACAAACATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCACGAACAAACATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCACGAACAAACATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAAGGTTCAGCATGTGCC ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCACGAACAAACATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAGTAAGAGTCATTAGTgtcataaaatctaactttgtgagcatttggcagct Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAAGGTTCAGCATGTGCC ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCACGAACAAACATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAGTAAGAGTCATTAGTgtcataaaatctaactttgtgagcatttggcagct Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCACGAACAAACATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCT-GAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagaGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCCGAACGGT-TGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from CESAR gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagaGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Spaln_aa2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Spaln_nt2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCT-GAACGTCGCT-TGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCCGAACG--GTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Pairagon GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCT-------------TGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAA-------------TACCCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Exonerate_protein2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Exonerate_coding2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from GeneWise GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGGCGCAGT-GGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgataggtgaatccatcttgagtcaactgatcgattaccttcttccagGATGGCAGTGGTTCCCTGCAGTGCAGTCGGATCTTTTG-GAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAACTGCAGGGAGGTGGACCACAGGAGCCCTCTAATTCTaggtaagtcatcacctctcccttccatactatttatcatgaagagcagggca Alignment from CESAR GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgataggtgaatccatcttgagtcaactgatcgattaccttcttccagGATGGCAGTGGTTCCCTGCAGTGCAGTCGGATCTTTTGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAACTGCAGGGAGGTGGACCACAGGAGCCCTCTAATTCTaggtaagtcatcacctctcccttccatactatttatcatgaagagcagggca Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgataggtgaatccatcttgagtcaactgatcgattaccttcttccagGATGGCAGTGGTTCCCTGCAGTGCAGTCGGATCTTTTGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAACTGCAGGGAGGTGGACCACAGGAGCCCTCTAATTCTAGgtaagtcatcacctctcccttccatactatttatcatgaagagcagggca Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgataggtgaatccatcttgagtcaactgatcgattaccttcttccagGATGGCAGTGGTTCCCTGCAGTGCAGTCGGATCTTTTGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAACTGCAGGGAGGTGGACCACAGGAGCCCTCTAATTCTAGgtaagtcatcacctctcccttccatactatttatcatgaagagcagggca Alignment from Pairagon GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgataggtgaatccatcttgagtcaactgatcgattaccttcttccagGATGGCAGTGGTTCCCTGCAGTGCAGTCGGATCTTTTGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAACTGCAGGGAGGTGGACCACAGGAGCCCTCTAATTCTAGgtaagtcatcacctctcccttccatactatttatcatgaagagcagggca Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgataggtgaatccatcttgagtcaactgatcgattaccttcttccagGATGGCAGTGGTTCCCTGCAGTGCAGTCGGATCTTTTGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAACTGCAGGGAGGTGGACCACAGGAGCCCTCTAATTCTAGgtaagtcatcacctctcccttccatactatttatcatgaagagcagggca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgataggtgaatccatcttgagtcaactgatcgattaccttcttccagGATGGCAGTGGTTCCCTGCAGTGCAGTCGGATCTTTTGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAACTGCAGGGAGGTGGACCACAGGAGCCCTCTAATTCTAGgtaagtcatcacctctcccttccatactatttatcatgaagagcagggca #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCC-AATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATATTATTACCCACGGGGCTTGAAGATATACGCCACACGCCTTAGTCCTGAAGATCCCCAATGTGG-AAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATATTATTACCCACGGGGCTTGAAGATATACGCCACACGCCTTAGTCCTGAAGATCCCCAATGTGGAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATATTATTACCCACGGGGCTTGAAGATATACGCCACACGCCTTAGTCCTGAAGATCCCCAATGTGGAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATATTATTACCCACGGGGCTTGAAGATATACGCCACACGCCTTAGTCCTGAAGATCCCCAATGTGGAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGA-CCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATATTATTACCCACGGGGCTTGAAGATATACGCCACACGCCTTAGTCCTGAAGATCCCCAATGTGG-AAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATATTATTACCCACGGGGCTTGAAGATATACGCCACACGCCTTAGTCCTGAAGATCCCCAATGTGGAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATATTATTACCCACGGGGCTTGAAGATATACGCCACACGCCTTAGTCCTGAAGATCCCCAATGTGGAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat #### Klc2_ID861_5 --> 1 - 0 Original Alignment gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAA-AAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagaGACCAGAATAAATACAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAACAAGA-ACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from CESAR gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagaGACCAGAATAAATACAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAACAAGAACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Spaln_aa2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAACAAGAACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Spaln_nt2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAACAAGAACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Pairagon GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAACAAGAACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Exonerate_protein2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGC ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAACAAGAACTGGGCAAGGATCAGCCAGCTGTATGgtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGCTGCGACC- ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAACAAGAACTGGGCAAGGATCAGCCAGCTGTATGGTGTCTAAgtagtccccctgtcctattaccagagcttccagtccc #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAG-ATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGCATGCTGGATC-ACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGCATGCTGGATCACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGCATGCTGGATCACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Spaln_nt2Genome GCCCAGGACCCCCAG-ATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGCATGCTGGATCA-CTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Pairagon GCCCAGGACCCCCAG-ATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGCATGCTGGATCA-CTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGCATGCTGGATCACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGCATGCTGGATCACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGCATGCTGGATCACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTG-TACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGCTACCTGG-GTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGCTACCTGGGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGCTACCTGGGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTG-TACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGCTACCTGG-GTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTG-TACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGCTACCTGG-GTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGCTACCTGGGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGCTACCTGGGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGCTACCTGGGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcaggAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTAC-GAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctgggggtgcttttttt Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcaggAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctggggtttctttctct Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctgggggtgcttttttt Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctgggggtgcttttttt Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctgggggtgcttttttt Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctgggggtgcttttttt Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctgggggtgcttttttt Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctgggggtgcttttttt #### Ldb1_ID9697_3 --> 1 - 2 Original Alignment cCCAACTCCCATGTAC-CCACCTACATACCTGGAGCCTGGGATCgg agtagaacagaaatgaatgccaaactttttcatgactttcctgttgtcagcCCAACTCCCATGTACCCCACCTACAT-CCTGGAGCCTGGGATTgggtgagcggactgcactgcattataccgttaagtcttgtctctgcatcatc Alignment from CESAR cCCAACTCCCATGTACCCACCTACATAC---CTGGAGCCTGGGATCgg agtagaacagaaatgaatgccaaactttttcatgactttcctgttgtcagcCCAACTCCCATGTAC---CCCACCTACATCCTGGAGCCTGGGATTgggtgagcggactgcactgcattataccgttaagtcttgtctctgcatcatc Alignment from Spaln_aa2Genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtagaacagaaatgaatgccaaactttttcatgactttcctgttgtcagCCCAACTCCCATGTACCCCACCTACATCCTGGAGCCTGGGATTGGgtgagcggactgcactgcattataccgttaagtcttgtctctgcatcatc Alignment from Spaln_nt2Genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtagaacagaaatgaatgccaaactttttcatgactttcctgttgtcagCCCAACTCCCATGTACCCCACCTACATCCTGGAGCCTGGGATTGGgtgagcggactgcactgcattataccgttaagtcttgtctctgcatcatc Alignment from Pairagon CCCAACTCCCATGTA-CCCACCTACATACCTGGAGCCTGGGATCGG agtagaacagaaatgaatgccaaactttttcatgactttcctgttgtcagCCCAACTCCCATGTACCCCACCTACAT-CCTGGAGCCTGGGATTGGgtgagcggactgcactgcattataccgttaagtcttgtctctgcatcatc Alignment from Exonerate_protein2genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtagaacagaaatgaatgccaaactttttcatgactttcctgttgtcagCCCAACTCCCATGTACCCCACCTACATCCTGGAGCCTGGGATTGGgtgagcggactgcactgcattataccgttaagtcttgtctctgcatcatc Alignment from Exonerate_coding2genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtagaacagaaatgaatgccaaactttttcatgactttcctgttgtcagCCCAACTCCCATGTACCCCACCTACATCCTGGAGCCTGGGATTGGgtgagcggactgcactgcattataccgttaagtcttgtctctgcatcatc Alignment from GeneWise CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtagaacagaaatgaatgccaaactttttcatgactttcctgttgtcagCCCAACTCCCATGTACCCCACCTACATCCTGGAGCCTGGGATTGGgtgagcggactgcactgcattataccgttaagtcttgtctctgcatcatc #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAG-TTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcaggtTTTATAGCTTTTTCACAAATGCCTGAGCTTAGCCA-GAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcaggtTTTATAGCTTTTTCACAAATGCCTGAGCTTAGCCAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGCTTAGCCAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGCTTAGCCAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGCTTAGCCAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGCTTAGCCAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGCTTAGCCAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGCTTAGCCAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca #### Lipf_ID6846_2 --> 0 - 1 Original Alignment AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAA-TGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAggtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from CESAR AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAATGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAggtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from Spaln_aa2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAATGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from Spaln_nt2Genome AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTA--------------------------------------------TGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAA-TGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGGTAGGTACATCATGTGTTTGGGAAGAAAAATCCTGAGCA----Ggccaat Alignment from Pairagon AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAA-TGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from Exonerate_protein2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAATGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from Exonerate_coding2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAATGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from GeneWise AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAATGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac #### Lipo1_ID6825_8 --> 0 - 0 Original Alignment GTAGGAAGAAGTGGTATACTTCAG-GCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAACGCTTATG-TTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from CESAR GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Spaln_aa2Genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Spaln_nt2Genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Pairagon GTAGGAAGAAGTGGTATACTTCAG-GCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAACGCTTATG-TTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Exonerate_protein2genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Exonerate_coding2genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from GeneWise GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGC-CAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCCAGCACC-TTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGggtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCCAGCACCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGggtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCCAGCACCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCCAGCACCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCCAGCACCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCCAGCACCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCCAGCACCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCCAGCACCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc #### Ltbp3_ID1256_8 --> 2 - 1 Original Alignment caGCCTTCAAGGAGATCTGCCCG-GCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAg tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagctGCCTTCAAGGAGATCTGTCCACGCAGGGA-GGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAggtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from CESAR caGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAg tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagctGCCTTCAAGGAGATCTGTCCACGCAGGGAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAggtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Spaln_aa2Genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCACGCAGGGAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Spaln_nt2Genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCACGCAGGGAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Pairagon CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCACGCAGGGAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Exonerate_protein2genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCACGCAGGGAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Exonerate_coding2genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAGGAGTGACCATGG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCACGCAGGGAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGGTAAGACTACAGgtgataatccactagcggacacaaggaagcaagagttc Alignment from GeneWise CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAGGAGTGACCATG- tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCACGCAGGGAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGGTAAGACTACAGgtgataatccactagcggacacaaggaagcaagagttc #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGC-CACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCCATCCCACTA-CATTACCTCACCTTCTCGGCCTTTCCTGggtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from CESAR CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCCATCCCACTACATTACCTCACCTTCTCGGCCTTTCCTGggtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCCATCCCACTACATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCC-ACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCCATCCCACTA-CATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Pairagon CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAG-CCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCCATCCCACTA-CATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCCATCCCACTACATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Exonerate_coding2genome ATCCACCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctTTCAGCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCCATCCCACTACATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from GeneWise -----------------GATCCACCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgagGCAATTCTCTCCTTTCCTTTCAGCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCCATCCCACTACATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTAC-CGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagatGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCCGCCTTC-TGTAGGTGCAGGGGGCCGCCTGTGCGTGggttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagatGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCCGCCTTCTGTAGGTGCAGGGGGCCGCCTGTGCGTGggttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCCGCCTTCTGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCCGCCTTCTGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCCGCCTTCTGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCCGCCTTCTGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCCGCCTTCTGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCCGCCTTCTGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt #### Ltbp3_ID1273_25 --> 2 - 1 Original Alignment GCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGG-GACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg GTACTggtaggcatttgttgaaggatgatggtctgtttttctttccccagggTCCCAGTGCTCTACTTTACAGAGTGAGATCAACTCATTTTGGCGACACCACTC-GCTGCTACTTGGG---------CGAggtaagagaggctaagctgaccattgtatgcaaatcctactataggttaac Alignment from CESAR GCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg GTACTggtacttatttgttgaaggatgatggtctgtttttctttccccagggTCCCAGTGCTCTACTTTACAGAGTGAGATCAACTCATTTTGGCGACACCACTCGCTGCTACTTGGG---------CGAggtaagagaggctaagctgaccattgtatgcaaatcctactataggtctga Alignment from Spaln_aa2Genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtaggcatttgttgaaggatgatggtctgtttttctttccccagGGTCCCAGTGCTCTACTTTACAGAGTGAGATCAACTCATTTTGGCGACACCACTCGCTGCTACTTGGGCGAGGTAAGAGAGgctaagctgaccattgtatgcaaatcctactataggttaac Alignment from Spaln_nt2Genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGG-GACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtaggcatttgttgaaggatgatggtctgtttttctttccccagGGTCCCAGTGCTCTACTTTACAGAGTGAGATCAACTCATTTTGGCGACACCA-CTCGCTGCTACTTGG---------GCGAGgtaagagaggctaagctgaccattgtatgcaaatcctactataggttaac Alignment from Pairagon GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGG-GACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtaggcatttgttgaaggatgatggtctgtttttctttccccagGGTCCCAGTGCTCTACTTTACAGAGTGAGATCAACTCATTTTGGCGACACCA-CTCGCTGCTACTTGG---------GCGAGgtaagagaggctaagctgaccattgtatgcaaatcctactataggttaac Alignment from Exonerate_protein2genome GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCT GTAGGCAT------TTGTTGAAGGATGATGGTCTGTTTTTCTTTCCCCAGGGTCCCAGTGCTCTACTTTACAGAgtgagatcaactcattttggcgacaccactcgctgctacttgggcgaggtaagagaggctaagctgaccattgtatgcaaatcctactataggttaac Alignment from Exonerate_coding2genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtaggcatttgttgaaggatgatggtctgtttttctttccccagGGTCCCAGTGCTCTACTTTACAGAGTGAGATCAACTCATTTTGGCGACACCACTCGCTGCTACTTGGGCGAGGTAAGAGAGgctaagctgaccattgtatgcaaatcctactataggttaac Alignment from GeneWise GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtaggcatttgttgaaggatgatggtctgtttttctttccccagGGTCCCAGTGCTCTACTTTACAGAGTGAGATCAACTCATTTTGGCGACACCACTCGCTGCTACTTGGG---------CGAGgtaagagaggctaagctgaccattgtatgcaaatcctactataggttaac #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAA-GTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccaggcTACCCTAATGAGGAGGCTGCAGAGCGTAGTGC-GGTTTCATTGCGGGAATGGTTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccaggcTACCCTAATGAGGAGGCTGCAGAGCGTAGTGCGGTTTCATTGCGGGAATGGTTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccagGCTACCCTAATGAGGAGGCTGCAGAGCGTAGTGCGGTTTCATTGCGGGAATGGTTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccagGCTACCCTAATGAGGAGGCTGCAGAGCGTAGTGCGGTTTCATTGCGGGAATGGTTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAA-GTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccagGCTACCCTAATGAGGAGGCTGCAGAGCGTAGTGC-GGTTTCATTGCGGGAATGGTTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccagGCTACCCTAATGAGGAGGCTGCAGAGCGTAGTGCGGTTTCATTGCGGGAATGGTTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Exonerate_coding2genome tggggtggggtccaatatgcattcacagctccttctctgcttatccccaggctaccctaatgaggaggctgcagagcgtagtgcggtttcattgcgggaatggttggagcaacacaaggacaaggtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from GeneWise GCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagCTCCTTCTCTGCTTATCCCCAGGC---------TACCCTAATGAGGAGGCTGCAGAGCGTAGTGCGGTTTCATTGCGGGAATGGTTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATT-TACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGGGCATTCTACAGGG-ACATCTTCCCCATTATTTCCCAGTAggtgagtaccaattgctcatatgctcgtagacatccctgatgttgctgctc Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGGGCATTCTACAGGGACATCTTCCCCATTATTTCCCAGTAggtgagtaccaattgctcatatgctcgtagacatcctatttcttgcttttc Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGGGCATTCTACAGGGACATCTTCCCCATTATTTCCCAGTAGgtgagtaccaattgctcatatgctcgtagacatccctgatgttgctgctc Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGGGCATTCTACAGGGACATCTTCCCCATTATTTCCCAGTAGGTgagtaccaattgctcatatgctcgtagacatccctgatgttgctgctc Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGGGCATTCTACAGGGACATCTTCCCCATTATTTCCCAGTAGgtgagtaccaattgctcatatgctcgtagacatccctgatgttgctgctc Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGGGCATTCTACAGGGACATCTTCCCCATTATTTCCCAGTAggtgagtaccaattgctcatatgctcgtagacatccctgatgttgctgctc Alignment from Exonerate_coding2genome tacaccagttacgttccaagcttaagttggttctgtgtttctctctctaggtggatcggctcatcatctgtgtcttcttggagaaagatgagggcattctacagggacatcttccccattatttcccagtaggtgagtaccaattgctcatatgctcgtagacatccctgatgttgctgctc Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGGGCATTCTACAGGGACATCTTCCCCATTATTTCCCAGTAGGTgagtaccaattgctcatatgctcgtagacatccctgatgttgctgctc #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTG-GCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagtTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGCGCTGTAA-TAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagtTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGCGCTGTAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGCGCTGTAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGCGCTGTAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTG-GCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGCGCTGT-AATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGCGCTGTAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGCGCTGTAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGCGCTGTAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa #### Map4k2_ID1625_5 --> 2 - 0 Original Alignment ccACTGGGCCCCTGGAA-GAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaagtccttctatccaagtccttcctgtttctcttaaagctACTGGACCACTTGAACGAACGGCAAA-TGCCTATGTTTGTTGGGCAGCCCTTAGGgtgagggatttgccaacagtatcaatttgggcagttagattgcctgtgag Alignment from CESAR ccACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaagtccttctatccaagtccttcctgtttctcttaaagctACTGGACCACTTGAACGAACGGCAAATGCCTATGTTTGTTGGGCAGCCCTTAGGgtgagggatttgccaacagtatcaatttgggcagttagattgcctgtgag Alignment from Spaln_aa2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaagtccttctatccaagtccttcctgtttctcttaaagCTACTGGACCACTTGAACGAACGGCAAATGCCTATGTTTGTTGGGCAGCCCTTAGGgtgagggatttgccaacagtatcaatttgggcagttagattgcctgtgag Alignment from Spaln_nt2Genome CCACTGGGCCCCTGGAA-GAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaagtccttctatccaagtccttcctgtttctcttaaagCTACTGGACCACTTGAACGAACGGCA-AATGCCTATGTTTGTTGGGCAGCCCTTAGGgtgagggatttgccaacagtatcaatttgggcagttagattgcctgtgag Alignment from Pairagon CCACTGGGCCCCTGGAA-GAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaagtccttctatccaagtccttcctgtttctcttaaagCTACTGGACCACTTGAACGAACGGCAAA-TGCCTATGTTTGTTGGGCAGCCCTTAGGgtgagggatttgccaacagtatcaatttgggcagttagattgcctgtgag Alignment from Exonerate_protein2genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaagtccttctatccaagtccttcctgtttctcttaaagCTACTGGACCACTTGAACGAACGGCAAATGCCTATGTTTGTTGGGCAGCCCTTAGGgtgagggatttgccaacagtatcaatttgggcagttagattgcctgtgag Alignment from Exonerate_coding2genome cttaaagatatcaagtccttctatccaagtccttcctgtttctcttaaagctactggaccacttgaacgaacggcaaatgcctatgtttgttgggcagcccttagggtgagggatttgccaacagtatcaatttgggcagttagattgcctgtgag Alignment from GeneWise CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaagtccttctatccaagtccttcctgtttctcttaaagCTACTGGACCACTTGAACGAACGGCAAATGCCTATGTTTGTTGGGCAGCCCTTAGGgtgagggatttgccaacagtatcaatttgggcagttagattgcctgtgag #### Map4k2_ID1627_6 --> 0 - 0 Original Alignment GGGCTCCACCACCTGCATTCTCAGGGGAAA-ATTCACCGAGACATTAAG------ agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAACATTCACAGAG-CATTAAGGTAGGGgtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from CESAR GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAACATTCACAGAGCATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Spaln_aa2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAACATTCACAGAGCATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Spaln_nt2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAA-ATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAACATTCACAGAG-CATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Pairagon GGGCTCCACCACCTGCATTCTCAGGGGAAA-ATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAACATTCACAGAG-CATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Exonerate_protein2genome agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagggcctccatcacctgcgttctaagggaaaacattcacagagcattaaggtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Exonerate_coding2genome agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagggcctccatcacctgcgttctaagggaaaacattcacagagcattaaggtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from GeneWise GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAACATTCACAGAGCATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment GGTGCCAACCTT-CTGCTCACTCTGCAGGGTGATGTCAAGCTGg aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCCTGCTCACTC-GCAGGGAGATGTGCAGTTGtgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from CESAR GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCCTGCTCACTCGCAGGGAGATGTGCAGTTGtgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Spaln_aa2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCCTGCTCACTCGCAGGGAGATGTGCAGTTGTgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Spaln_nt2Genome GGTGCCAACCTTC-TGCTCACTCTGCAGGGTGATGTCAAGCTGG aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCCTGCTCACTC-GCAGGGAGATGTGCAGTTGTgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Pairagon GGTGCCAACCTT-CTGCTCACTCTGCAGGGTGATGTCAAGCTGG aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCCTGCTCACTC-GCAGGGAGATGTGCAGTTGTgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Exonerate_protein2genome aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagggcgcgaaccttcctgctcactcgcagggagatgtgcagttgtgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Exonerate_coding2genome aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagggcgcgaaccttcctgctcactcgcagggagatgtgcagttgtgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from GeneWise aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagggcgcgaaccttcctgctcactcgcagggagatgtgcagttgtgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAG-CTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagccGATTTTGGGGTCACAGATGAACGCTACAA-ATCTGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACtggtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagccGATTTTGGGGTCACAGATGAACGCTACAAATCTGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACtggtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagCCGATTTTGGGGTCACAGATGAACGCTACAAATCTGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACTGgtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagCCGATTTTGGGGTCACAGATGAACGCTACAAATCTGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACTGgtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTGACAGC-----------------ATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagCCGATTTTGGGGT-----------------CACAGATGAACGCTACAAATCTGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACTGgtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Exonerate_protein2genome tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagccgattttggggtcacagatgaacgctacaaatctgttgctaagaggcactctctcataggcactccatactggtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Exonerate_coding2genome tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagccgattttggggtcacagatgaacgctacaaatctgttgctaagaggcactctctcataggcactccatactggtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagCCGATTTTGGGGTCACAGATGAACGCTACAAATCTGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACTGgtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCA-CTGTTCCACCTGCACCCCATGag gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacaggATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAGCTCCAACATCCGCCTAC-CCACCTGCACCCCATGaggtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctt Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacaggATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAGCTCCAACATCCGCCTACCCACCTGCACCCCATGaggtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctc Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAGCTCCAACATCCGCCTACCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctt Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAGCTCCAACATCCGCCTACCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctt Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAGCTCCAACATCCGCCTACCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctt Alignment from Exonerate_protein2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAGCTCCAACATCCGCCTACCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctt Alignment from Exonerate_coding2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAGCTCCAACATCCGCCTACCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctt Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAGCTCCAACATCCGCCTACCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctt #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAA-AGAGGAACTGAGTgggcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from CESAR TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTgggcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Pairagon TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGGAGC cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGGCAAgtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGA cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAgtgggcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAA-CGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCCGGGCTCCAT-CTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAggtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCCGGGCTCCATCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAggtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCCGGGCTCCATCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAAC-GGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCCGGGCTCCA-TCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTG---CCCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAA-CGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCCGGGCTCCA-TCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTG---CCCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCCGGGCTCCATCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Exonerate_coding2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCCGGGCTCCATCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from GeneWise AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG AACAACTTTTTATGAGACCGGGCTTG------CCCTGTGTTGTCACCCAGGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCCGGGCTCCATCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGC-CATGGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCCTATGGTCTTC-TCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggaaagtgct Alignment from CESAR CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCCTATGGTCTTCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggtgtggctc Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCCTATGGTCTTCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggaaagtgct Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCCTATGGTCTTCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggaaagtgct Alignment from Pairagon CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCCTATGGTCTTCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggaaagtgct Alignment from Exonerate_protein2genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCCTATGGTCTTCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggaaagtgct Alignment from Exonerate_coding2genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCCTATGGTCTTCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggaaagtgct Alignment from GeneWise CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCCTATGGTCTTCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggaaagtgct #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCC-AAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCCAAGGTCTCTA-TGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAggtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCCAAGGTCTCTATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAggtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCCAAGGTCTCTATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCC-AAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCCAAGGTC-TCTATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCCAAGGTCTCTATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCCAAGGTCTCTATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCCAAGGTCTCTATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCCAAGGTCTCTATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag #### Map4k2_ID1643_22 --> 2 - 0 Original Alignment acCAGTTCCTGGTGGTAGGGGCTGAG-GAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttgtattcagaggccagcatgacgtgtcatcttctttatcaattatagacCAGTTCCTGGTAGTGGGAGCTAAGCGAGGGCT-CTATACCCTCAACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgtaagtcttgttttttttttattctgcttcagCTGATTTCTCAGCGCTAC Alignment from CESAR acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttgtattcagaggccagcatgacgtgtcatcttctttatcaattatagacCAGTTCCTGGTAGTGGGAGCTAAGCGAGGGCTCTATACCCTCAACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgtaagtcttgtttccttggttctgaattttagCTGATTTCTCAGCGCTAC Alignment from Spaln_aa2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttgtattcagaggccagcatgacgtgtcatcttctttatcaattatagACCAGTTCCTGGTAGTGGGAGCTAAGCGAGGGCTCTATACCCTCAACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgtaagtcttgttttttttttattctgcttcagCTGATTTCTCAGCGCTAC Alignment from Spaln_nt2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttgtattcagaggccagcatgacgtgtcatcttctttatcaattatagACCAGTTCCTGGTAGTGGGAGCTAAGCGAGGGCTCTATACCCTCAACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgtaagtcttgttttttttttattctgcttcagCTGATTTCTCAGCGCTAC Alignment from Pairagon ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttgtattcagaggccagcatgacgtgtcatcttctttatcaattatagACCAGTTCCTGGTAGTGGGAGCTAAGCGAGGGCTCTATACCCTCAACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgtaagtcttgttttttttttattctgcttcagCTGATTTCTCAGCGCTAC Alignment from Exonerate_protein2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttgtattcagaggccagcatgacgtgtcatcttctttatcaattatagACCAGTTCCTGGTAGTGGGAGCTAAGCGAGGGCTCTATACCCTCAACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgtaagtcttgttttttttttattctgcttcagCTGATTTCTCAGCGCTAC Alignment from Exonerate_coding2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttgtattcagaggccagcatgacgtgtcatcttctttatcaattatagACCAGTTCCTGGTAGTGGGAGCTAAGCGAGGGCTCTATACCCTCAACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgtaagtcttgttttttttttattctgcttcagCTGATTTCTCAGCGCTAC Alignment from GeneWise ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttgtattcagaggccagcatgacgtgtcatcttctttatcaattatagACCAGTTCCTGGTAGTGGGAGCTAAGCGAGGGCTCTATACCCTCAACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgtaagtcttgttttttttttattctgcttcagCTGATTTCTCAGCGCTAC #### Map4k2_ID1649_28 --> 2 - 1 Original Alignment agGGGATCCCAGGTTCTGCA-CAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagagGGGATTCCAGGCCCTGCACCAACAAG-AATACAGGTAGATCGGGACAAAGTCTTGGTCAGCTTTGAAcgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from CESAR agGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagagGGGATTCCAGGCCCTGCACCAACAAGAATACAGGTAGATCGGGACAAAGTCTTGGTCAGCTTTGAAcgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Spaln_aa2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTGCACCAACAAGAATACAGGTAGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Spaln_nt2Genome AGGGGATCCCAGGTTCTGCAC-AGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTGCACCAACAAG-AATACAGGTAGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Pairagon AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAA-----------GTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTGCA-----------CCAACAAGAATACAGGTAGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Exonerate_protein2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTGCACCAACAAGAATACAGGTAGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Exonerate_coding2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTGCACCAACAAGAATACAGGTAGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from GeneWise AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTGCACCAACAAGAATACAGGTAGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc #### Map4k2_ID1652_31 --> 0 - 2 Original Alignment GTGACGCAGGAGATAACAGATGAGACCAGGATCTTC-CGAGTACTGGGGGCTCACag gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCCGAG-ACTTGGAGCCCATaggtaagtgcaaaacagacctccttgatttgtaaagttgtagggcgtgggat Alignment from CESAR GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACag gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCCGAGACTTGGAGCCCATaggtaagtgcaaaacagacctccttgatttgtaaagttgtagggtatatgat Alignment from Spaln_aa2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCCGAGACTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggcgtgggat Alignment from Spaln_nt2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCCGAGACTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggcgtgggat Alignment from Pairagon GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCCGAGACTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggcgtgggat Alignment from Exonerate_protein2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCCGAGACTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggcgtgggat Alignment from Exonerate_coding2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCCGAGACTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggcgtgggat Alignment from GeneWise GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCCGAGACTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggcgtgggat #### Mark2_ID2111_10 --> 0 - 1 Original Alignment CAAATTATG---------------AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAG-CTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg gctctcaaataccctcatcctgtaccctagaatttccatttcctccacagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGC-TTATGTGGAACCTTTTCCTGACTATAGGGAACCACGGCGAACGggtgggcctgtggtgctgtgggcctgagatatggccacattgggagatagc Alignment from CESAR CAAATTATGAAA---------------GATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg gctctcaaataccctcatcctgtaccctagaatttccatttcctccacagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTATGTGGAACCTTTTCCTGACTATAGGGAACCACGGCGAACGggtgggcctgtggtgctgtgggcctgagatatggccacattgggagatagc Alignment from Spaln_aa2Genome CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG gctctcaaataccctcatcctgtaccctagaatttccatttcctccacagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTATGTGGAACCTTTTCCTGACTATAGGGAACCACGGCGAACGGgtgggcctgtggtgctgtgggcctgagatatggccacattgggagatagc Alignment from Spaln_nt2Genome CAAATTATGAAAGAT---------------CGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG gctctcaaataccctcatcctgtaccctagaatttccatttcctccacagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTATGTGGAACCTTTTCCTGACTATAGGGAACCACGGCGAACGGgtgggcctgtggtgctgtgggcctgagatatggccacattgggagatagc Alignment from Pairagon CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG gctctcaaataccctcatcctgtaccctagaatttccatttcctccacagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTATGTGGAACCTTTTCCTGACTATAGGGAACCACGGCGAACGGgtgggcctgtggtgctgtgggcctgagatatggccacattgggagatagc Alignment from Exonerate_protein2genome AGCAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG gctctcaaataccctcatcctgtaccctagaatttccatttcctccacagcaaattatgaaagATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTATGTGGAACCTTTTCCTGACTATAGGGAACCACGGCGAACGGgtgggcctgtggtgctgtgggcctgagatatggccacattgggagatagc Alignment from Exonerate_coding2genome AGCAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG gctctcaaataccctcatcctgtaccctagaatttccatttcctccacagcaaattatgaaagATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTATGTGGAACCTTTTCCTGACTATAGGGAACCACGGCGAACGGgtgggcctgtggtgctgtgggcctgagatatggccacattgggagatagc Alignment from GeneWise ---------------CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG gctctcaaataccctcatcctgtaccctagaatttccatttcctccacagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTATGTGGAACCTTTTCCTGACTATAGGGAACCACGGCGAACGGgtgggcctgtggtgctgtgggcctgagatatggccacattgggagatagc #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAGTAC-TGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACC-GAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from CESAR ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Pairagon ATAGTGTCTGCTGTGCAGTA-CTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACC-GAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from GeneWise ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc #### Ms4a10_ID3085_2 --> 0 - 0 Original Alignment GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGC-TGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTCTGGTATCCAC-CTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from CESAR GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTCTGGTATCCACCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Spaln_aa2Genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTCTGGTATCCACCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Spaln_nt2Genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTG-CTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTCTGGTATCCAC-CTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Pairagon GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTG-CTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTCTGGTATCCAC-CTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Exonerate_protein2genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTCTGGTATCCACCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Exonerate_coding2genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTCTGGTATCCACCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from GeneWise GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTCTGGTATCCACCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa #### Ms4a5_ID3161_4 --> 0 - 0 Original Alignment ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGAT-GGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATCGGGGAAT-CATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from CESAR ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATCGGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Spaln_aa2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATCGGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Spaln_nt2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATCGGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Pairagon ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATCGGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Exonerate_protein2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATCGGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Exonerate_coding2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATCGGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from GeneWise ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATCGGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGC-AGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagtGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACCAGCT-CATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCA------GCTACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagtGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACCAGCTCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACT------AGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACCAGCTCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGC-AGCTCA-----ATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATAT---CACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACCAGCTCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACT------AGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAG-CAGCTCA-----ATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGA-----TATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACCAGCTCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACT--------AGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACCAGCTCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACTAGAGAT---ATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagtgccgtgggcacttttgttagagctctagattgcaaccagctcatttctattcagcagtccagcttgcatatgagcgcagctactagagatattatcactctggtatGGACCAAGTCACAAATATTTTAGTATGATAAGCCAAGAGTGGAGTG Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACCAGCTCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCT------ACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAAT-GGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATCGGATATG-CCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATCGGATATGCCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATCGGATATGCCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATCGGATATGCCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAAT-GGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATCGGATATG-CCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATCGGATATGCCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATCGGATATGCCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATCGGATATGCCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCC-GTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Pairagon CTACCCTGGAAGTCACTTGCAAG-CATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCC-GTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTta atgtgcctgagatgattccaaatttagcttggttttccactttgctgcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGTATACTTGAAAC-GGTGTATATCCCCACTtagtaagtctgccagcattgcaaaaccagaacccctgatctgccatggtgac Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTta atgtgcctgagatgattccaaatttagcttggttttccactttgctgcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACTtagtaagtctgccagcattgcaaaaccagaacccctgatctgccatggtgac Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atgtgcctgagatgattccaaatttagcttggttttccactttgctgcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACTTAgtaagtctgccagcattgcaaaaccagaacccctgatctgccatggtgac Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atgtgcctgagatgattccaaatttagcttggttttccactttgctgcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACTTAgtaagtctgccagcattgcaaaaccagaacccctgatctgccatggtgac Alignment from Pairagon AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atgtgcctgagatgattccaaatttagcttggttttccactttgctgcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACTTAgtaagtctgccagcattgcaaaaccagaacccctgatctgccatggtgac Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atgtgcctgagatgattccaaatttagcttggttttccactttgctgcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACTTAgtaagtctgccagcattgcaaaaccagaacccctgatctgccatggtgac Alignment from Exonerate_coding2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atgtgcctgagatgattccaaatttagcttggttttccactttgctgcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACTTAgtaagtctgccagcattgcaaaaccagaacccctgatctgccatggtgac Alignment from GeneWise AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atgtgcctgagatgattccaaatttagcttggttttccactttgctgcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACTTAgtaagtctgccagcattgcaaaaccagaacccctgatctgccatggtgac #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAA-ATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaaggcTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAACATTCACC-TCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgattac Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaaggcTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggtgagtaggatgacgttttcgagcaaggtcagatcttctatttcagcttc Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgattac Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgattac Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgattac Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgattac Alignment from Exonerate_coding2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgattac Alignment from GeneWise GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAACATTCACCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgattac #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCT-CGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttcagcttctgtctctgtcttccagttGCTCAGGCACTTCTAAAGCCAAAAACACCTCAGGG-TACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcataccaggttaattattttacttttttc Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttcagcttctgtctctgtcttccagttGCTCAGGCACTTCTAAAGCCAAAAACACCTCAGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcataccaggttaattattttacttttttc Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttcagcttctgtctctgtcttccagTTGCTCAGGCACTTCTAAAGCCAAAAACACCTCAGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcataccaggttaattattttacttttttc Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttcagcttctgtctctgtcttccagTTGCTCAGGCACTTCTAAAGCCAAAAACACCTCAGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcataccaggttaattattttacttttttc Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttcagcttctgtctctgtcttccagTTGCTCAGGCACTTCTAAAGCCAAAAACACCTCAGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcataccaggttaattattttacttttttc Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttcagcttctgtctctgtcttccagTTGCTCAGGCACTTCTAAAGCCAAAAACACCTCAGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcataccaggttaattattttacttttttc Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttcagcttctgtctctgtcttccagTTGCTCAGGCACTTCTAAAGCCAAAAACACCTCAGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcataccaggttaattattttacttttttc Alignment from GeneWise -------------------------------------------------GTGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT TTTCGAGCAAGGTCAGATCTTCTATTTCAGCTTCTGTCTCTGTCTTCCAGTTGCTCAGGCACTTCTAAAGCCAAAAACACCTCAGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcataccaggttaattattttacttttttc #### Myof_ID7468_34 --> 0 - 0 Original Alignment GATGGCTCCAACCTT-CCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCCATCC-TCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from CESAR GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCCATCCTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Spaln_aa2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCCATCCTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Spaln_nt2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCCATCCTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Pairagon GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCCATCCTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Exonerate_protein2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCCATCCTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Exonerate_coding2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCCATCCTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from GeneWise GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCCATCCTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac #### Myof_ID7493_9 --> 0 - 0 Original Alignment GTTTATAATTCCCAT-TCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgggagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATCTCTTTGA-AGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from CESAR GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATCTCTTTGAAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Spaln_aa2Genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgggagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATCTCTTTGAAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Spaln_nt2Genome GTTTATAATTCCCAT-TCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgggagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATCTCTTTGA-AGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Pairagon GTTTATAATTCCCAT-TCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgggagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATCTCTTTGA-AGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Exonerate_protein2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgggagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATCTCTTTGAAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Exonerate_coding2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgggagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATCTCTTTGAAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from GeneWise GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgggagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATCTCTTTGAAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTC-CCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagcCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCCTCACA-AAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagcCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCCTCACAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCCTCACAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCCTCACAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCCTCACAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCCTCACAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCCTCACAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTAGTAGGGCAGGCAGTGTCCCCTCACAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATC-CTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacaggtGTCATTGCCCAGGAAGTGAAGGAGATTCTTGC-TGAAGCTGTGGAGGACACAGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacaggtGTCATTGCCCAGGAAGTGAAGGAGATTCTTGCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTCTTGCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTCTTGCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTCTTGCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTCTTGCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTCTTGCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTCTTGCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTC-TTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTCTTTCACCCTG-CCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTCTTTCACCCTGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTCTTTCACCCTGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGT-CTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACT---AGATACAGTTCTTTCACCCT-GCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGG-TCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACT---AGATACAGTTCTTTCACCCT-GCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTCTTTCACCCTGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTCTTTCACCCTGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTCTTTCACCCTGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagaGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTG-CAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagaGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGG---GGCTCCATTTCACTGAGCACCACTG-CAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGG---GGCTCCATTTCACTGAGCACCACTG-CAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac #### Myrf_ID2732_6 --> 1 - 1 Original Alignment aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACC-CTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagaCTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCCTCAATG-CCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTggtatgtgagactaacatagactggacaaccatgcagatttagtagtcact Alignment from CESAR aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagaCTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCCTCAATGCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTggtatgtgagactaacatagactggacaaccatgcagatttagtccctacc Alignment from Spaln_aa2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCCTCAATGCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtagtcact Alignment from Spaln_nt2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCCTCAATGCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtagtcact Alignment from Pairagon ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACA-CCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCCTCAATG-CCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtagtcact Alignment from Exonerate_protein2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCCTCAATGCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtagtcact Alignment from Exonerate_coding2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCCTCAATGCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtagtcact Alignment from GeneWise ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCCTCAATGCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtagtcact #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGC-CTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag cgcgtccctctatggtgtcaaggcgctcttactggtattgttcaccatagcTATGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCCTAGAGA-GTTTCTCATTCAGATTCTCCAGCTAATGGCCAACaggtgagtagtatcttgcaggaattggcttgctgggagaggttggtcctgag Alignment from CESAR cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag cgcgtccctctatggtgtcaaggcgctcttactggtattgttcaccatagcTATGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCCTAGAGAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACaggtgagtagtatcttgcaggaattggcttgctgggagaggttggtcctgag Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG cgcgtccctctatggtgtcaaggcgctcttactggtattgttcaccatagCTATGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCCTAGAGAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtgagtagtatcttgcaggaattggcttgctgggagaggttggtcctgag Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG cgcgtccctctatggtgtcaaggcgctcttactggtattgttcaccatagCTATGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCCTAGAGAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtgagtagtatcttgcaggaattggcttgctgggagaggttggtcctgag Alignment from Pairagon CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG cgcgtccctctatggtgtcaaggcgctcttactggtattgttcaccatagCTATGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCCTAGAGAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtgagtagtatcttgcaggaattggcttgctgggagaggttggtcctgag Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG cgcgtccctctatggtgtcaaggcgctcttactggtattgttcaccatagCTATGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCCTAGAGAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtgagtagtatcttgcaggaattggcttgctgggagaggttggtcctgag Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG cgcgtccctctatggtgtcaaggcgctcttactggtattgttcaccatagCTATGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCCTAGAGAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtgagtagtatcttgcaggaattggcttgctgggagaggttggtcctgag Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG cgcgtccctctatggtgtcaaggcgctcttactggtattgttcaccatagCTATGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCCTAGAGAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtgagtagtatcttgcaggaattggcttgctgggagaggttggtcctgag #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTG-GTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg ctgctgatggattctattctcctccgtattcttttcttcctctattttagaGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGC-GCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtgcgagtctagaaatgtcaaggcaggatggcactctgcatatcttctca Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg ctgctgatggattctattctcctccgtattcttttcttcctctattttagaGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtgcgagtctagaaatgtcaaggcaggatgggtatttgctgtgctctctt Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggcactctgcatatcttctca Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggcactctgcatatcttctca Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTG-GTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGC-GCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggcactctgcatatcttctca Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggcactctgcatatcttctca Alignment from Exonerate_coding2genome ctgctgatggattctattctcctccgtattcttttcttcctctattttagagagcttgcaaaggaaccacatgtcgccaccagcactcgagatgatgccctgcgttcagcgctgctggggcgttggaaggatacagcaccgggactggactcagccaagacctatgaatatcgggtgttgctcgctttccctaatgcagagcaggctaacagtgtggaagttggtgcgagtctagaaatgtcaaggcaggatggcactctgcatatcttctca Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggcactctgcatatcttctca #### Naaladl1_ID1444_3 --> 2 - 0 Original Alignment tgGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAA-CCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG agtgtctagaaatgtcaaggcaggatgggtatttgctgtgctctctttagtaGGCCCCAATGGAACAACATTCCACTCCTTTCAACCTTTCAAGAGGAATCTAACTGGAGAGCAGGCAGGGCCTAATGCATTACAACCCTTATG-TGCCTATGCTCCTCCAGGGACCCCCAAAgtgagctgaggactctggttgcactcacattgtgctcactagattcactc Alignment from CESAR tgGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG cgagtctagaaatgtcaaggcaggatgggtatttgctgtgctctctttagtaGGCCCCAATGGAACAACATTCCACTCCTTTCAACCTTTCAAGAGGAATCTAACTGGAGAGCAGGCAGGGCCTAATGCATTACAACCCTTATGTGCCTATGCTCCTCCAGGGACCCCCAAAgtgagctgaggactctggttgcactcacattgtgctcactagattcactc Alignment from Spaln_aa2Genome TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG agtgtctagaaatgtcaaggcaggatgggtatttgctgtgctctctttagTAGGCCCCAATGGAACAACATTCCACTCCTTTCAACCTTTCAAGAGGAATCTAACTGGAGAGCAGGCAGGGCCTAATGCATTACAACCCTTATGTGCCTATGCTCCTCCAGGGACCCCCAAAgtgagctgaggactctggttgcactcacattgtgctcactagattcactc Alignment from Spaln_nt2Genome TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACC-TTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG agtgtctagaaatgtcaaggcaggatgggtatttgctgtgctctctttagTAGGCCCCAATGGAACAACATTCCACTCCTTTCAACCTTTCAAGAGGAATCTAACTGGAGAGCAGGCAGGGCCTAATGCATTACAACCCTTATG-TGCCTATGCTCCTCCAGGGACCCCCAAAgtgagctgaggactctggttgcactcacattgtgctcactagattcactc Alignment from Pairagon TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAA-CCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG agtgtctagaaatgtcaaggcaggatgggtatttgctgtgctctctttagTAGGCCCCAATGGAACAACATTCCACTCCTTTCAACCTTTCAAGAGGAATCTAACTGGAGAGCAGGCAGGGCCTAATGCATTACAACCCTTATG-TGCCTATGCTCCTCCAGGGACCCCCAAAgtgagctgaggactctggttgcactcacattgtgctcactagattcactc Alignment from Exonerate_protein2genome TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG agtgtctagaaatgtcaaggcaggatgggtatttgctgtgctctctttagTAGGCCCCAATGGAACAACATTCCACTCCTTTCAACCTTTCAAGAGGAATCTAACTGGAGAGCAGGCAGGGCCTAATGCATTACAACCCTTATGTGCCTATGCTCCTCCAGGGACCCCCAAAgtgagctgaggactctggttgcactcacattgtgctcactagattcactc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG agtgtctagaaatgtcaaggcaggatgggtatttgctgtgctctctttagTAGGCCCCAATGGAACAACATTCCACTCCTTTCAACCTTTCAAGAGGAATCTAACTGGAGAGCAGGCAGGGCCTAATGCATTACAACCCTTATGTGCCTATGCTCCTCCAGGGACCCCCAAAgtgagctgaggactctggttgcactcacattgtgctcactagattcactc #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGA-CCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagtAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCCTGGATTTG-GCCAAATGAAAGTTTCCCTGATGGAaggtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagtAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGGCCAAATGAAAGTTTCCCTGATGGAaggtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Exonerate_coding2genome aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagtaacctcacaggaacttctgcccctactttctggcagagagctctaggctgtgaatacaaactaggaccctggatttggccaaatgaaagtttccctgatggaaggtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGC-GTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg gcataaaggtgggacttggatgttacctttactctggttctttattttaggtTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTCGTGCTTC-CCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtcagtcacagcatcctgaggcagtgctctcttcctggcccttcacaggg Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg gcataaaggtgggacttggatgttacctttactctggttctttattttaggtTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTCGTGCTTCCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtcagtcacagcatcctgaggcagtgccccccccactcccaccaccaggg Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTCGTGCTTCCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgctctcttcctggcccttcacagGG Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTCGTGCTTCCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgctctcttcctggcccttcacagGG Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAG-CGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTCGTGCTTC-CCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgctctcttcctggcccttcacagGG Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTCGTGCTTCCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgctctcttcctggcccttcacagGG Alignment from Exonerate_coding2genome CCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTGGTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG GCATAAAGGTGGGACTTGGATGTTACCTTTACTCTGGTTCTTTATTTTAGGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTCGTGCTTCCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgctctcttcctggcccttcacagGG Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG------------------------------------------------GGG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTCGTGCTTCCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGGTCAGTCACAGCATCCTGAGGCAGTGCTCTCTTCCTGGCCCTTCACAGGG #### Ndufs8_ID194_2 --> 2 - 1 Original Alignment gaCATCTTAATGGACAAAGCCTTCATAGCAGC-GCAGTGGCGGCAACGTACa ctggggctcttgaggaacaggtcttccaagtgttcaccccctttccccaggaCATCTGAATGGACAGAGCCTGCACAGCAGTCGCTG-GGCATCAACATACagtgagtagctgaaattcagatcaggctcatataacccttagcatgctgaa Alignment from CESAR gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACa ctggggctcttgaggaacaggtcttccaagtgttcaccccctttccccaggaCATCTGAATGGACAGAGCCTGCACAGCAGTCGCTGGGCATCAACATACagtgagtagctgaaattcagatcaggctcatataacccttagcatgctgaa Alignment from Spaln_aa2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctggggctcttgaggaacaggtcttccaagtgttcaccccctttccccagGACATCTGAATGGACAGAGCCTGCACAGCAGTCGCTGGGCATCAACATACAgtgagtagctgaaattcagatcaggctcatataacccttagcatgctgaa Alignment from Spaln_nt2Genome GACATCTTAATGGACAAAGCCTTCATAGCAG-CGCAGTGGCGGCAACGTACA ctggggctcttgaggaacaggtcttccaagtgttcaccccctttccccagGACATCTGAATGGACAGAGCCTGCACAGCAGTCGCTG-GGCATCAACATACAgtgagtagctgaaattcagatcaggctcatataacccttagcatgctgaa Alignment from Pairagon GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctggggctcttgaggaacaggtcttccaagtgttcaccccctttccccagGACATCTGAATGGACAGAGCCTGCACAGCAGTCGCTGGGCATCAACATACAgtgagtagctgaaattcagatcaggctcatataacccttagcatgctgaa Alignment from Exonerate_protein2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctggggctcttgaggaacaggtcttccaagtgttcaccccctttccccagGACATCTGAATGGACAGAGCCTGCACAGCAGTCGCTGGGCATCAACATACAgtgagtagctgaaattcagatcaggctcatataacccttagcatgctgaa Alignment from Exonerate_coding2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctggggctcttgaggaacaggtcttccaagtgttcaccccctttccccagGACATCTGAATGGACAGAGCCTGCACAGCAGTCGCTGGGCATCAACATACAgtgagtagctgaaattcagatcaggctcatataacccttagcatgctgaa Alignment from GeneWise GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctggggctcttgaggaacaggtcttccaagtgttcaccccctttccccagGACATCTGAATGGACAGAGCCTGCACAGCAGTCGCTGGGCATCAACATACAgtgagtagctgaaattcagatcaggctcatataacccttagcatgctgaa #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCT-CTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCCTAGGTG-TGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCCTAGGTGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCCTAGGTGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCCTAGGTGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTG-CTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCCTAGGTG-TGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCCTAGGTGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCCTAGGTGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCCTAGGTGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc #### Ndufv1_ID274_8 --> 0 - 1 Original Alignment ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGT-GGCCAGTGTACCCCGTGCCGTGAGg tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTCGGTCAGT-TACCCCATGCCGAGAAggtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from CESAR ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTCGGTCAGTTACCCCATGCCGAGAAggtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Spaln_aa2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTCGGTCAGTTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Spaln_nt2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGT-GGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTCGGTCAGT-TACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Pairagon ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGT-GGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTCGGTCAGT-TACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Exonerate_protein2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTCGGTCAGTTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Exonerate_coding2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTCGGTCAGTTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from GeneWise ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTCGGTCAGTTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTT-ATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcaggtGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACGCCAGGTGGATCATCC---ACATTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTCATTG-CATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcaggtGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACGCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTCATTGCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACGCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTCATTGCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACGCCAGGTGGATCATCCA---CATTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTCATTGCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACGCCAGGTGGATCATCCA---CATTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTCATTGCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACGCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTCATTGCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACGCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTCATTGCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCGACAG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACGCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTCATTGCATGGATCGTCTGGCAAgtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCC-CATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCCATGGTG-CTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaagcca Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCCATGGTGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaatggt Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCCATGGTGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaagcca Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCCATGGTGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaagcca Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCCATGGTGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaagcca Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCCATGGTGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaagcca Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCCATGGTGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaagcca Alignment from GeneWise CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCCATGGTGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaagcca #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCC-AAGCCTCAGGGCCTTACAg gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagaTTCAATAATTTGGGC------CATGTAACCAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCCAAAC-ACAGGGCCTGGCTggtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagaTTCAATAATTTGGGC------CATGTAACCAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCCAAACACAGGGCCTGGCTggtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGC------CATGTAACCAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCCAAACACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGG------CCATGTAACCAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCCAAACACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGC------CATGTAACCAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCCAAACACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGC------CATGTAACCAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCCAAACACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGC------CATGTAACCAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCCAAACACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGC------CATGTAACCAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCCAAACACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGC-ATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCCATTGTAC-GCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCagtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCagtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAG-CATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCCATTGTAC-GCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAG-AGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAg catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAACAGACCCG-GACTGTGTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGggtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAg catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAACAGACCCGGACTGTGTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGggtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAACAGACCCGGACTGTGTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTA---CCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAACAGACCCGGACTGTGTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Pairagon TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAACAGACCCGGACTGTGTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAACAGACCCGGACTGTGTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAACAGACCCGGACTGTGTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAACAGACCCGGACTGTGTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCC-TACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttaggtGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCCTACCAAT-TGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAggtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttaggtGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCCTACCAATTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAggtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCCTACCAATTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCCTACCAATTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAA-CCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCCTACCAAT-TGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCCTACCAATTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCCTACCAATTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCCTACCAATTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAG-ACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtgtgcagaagtgtggccagagactacctgtcccccagcCCATTACACTTAGCCATTATCCATGGGCAGCATAGGTA-CATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgtagggacaacttaaaaattgtaagcaagaagtcgaaggctgacccttct Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtgtgcagaagtgtggccagagactacctgtcccccagcCCATTACACTTAGCCATTATCCATGGGCAGCATAGGTACATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgtagggacaacttaaaaattgtaagcaagaagtcgaaggctgacccatct Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtgtgcagaagtgtggccagagactacctgtcccccagCCCATTACACTTAGCCATTATCCATGGGCAGCATAGGTACATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgtagggacaacttaaaaattgtaagcaagaagtcgaaggctgacccttct Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtgtgcagaagtgtggccagagactacctgtcccccagCCCATTACACTTAGCCATTATCCATGGGCAGCATAGGTACATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgtagggacaacttaaaaattgtaagcaagaagtcgaaggctgacccttct Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtgtgcagaagtgtggccagagactacctgtcccccagCCCATTACACTTAGCCATTATCCATGGGCAGCATAGGTACATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgtagggacaacttaaaaattgtaagcaagaagtcgaaggctgacccttct Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtgtgcagaagtgtggccagagactacctgtcccccagCCCATTACACTTAGCCATTATCCATGGGCAGCATAGGTACATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgtagggacaacttaaaaattgtaagcaagaagtcgaaggctgacccttct Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtgtgcagaagtgtggccagagactacctgtcccccagCCCATTACACTTAGCCATTATCCATGGGCAGCATAGGTACATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgtagggacaacttaaaaattgtaagcaagaagtcgaaggctgacccttct Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG atgaaaataggggtgtgcagaagtgtggccagagactacctgtcccccagCCCATTACACTTAGCCATTATCCATGGGCAGCATAGGTACATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgtagggacaacttaaaaattgtaagcaagaagtcgaaggctgacccttct #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTG-GTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacaggaCTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACTGCGGAGCTGTAGTGGAGGCTCCAGGGAGGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGCGTTGCCC-TTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacaggaCTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACTGCGGAGCTGTAGTGGAGGCTCCAGGGAGGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGCGTTGCCCTTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACTGCGGAGCTGTAGTGGAGGCTCCAGGGAGGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGCGTTGCCCTTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACTGCGGAGCTGTAGTGGAGGCTCCAGGGAGGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGCGTTGCCCTTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACTGCGGAGCTGTAGTGGAGGCTCCAGGGAGGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGCGTTGCCCTTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACTGCGGAGCTGTAGTGGAGGCTCCAGGGAGGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGCGTTGCCCTTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACTGCGGAGCTGTAGTGGAGGCTCCAGGGAGGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGCGTTGCCCTTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACTGCGGAGCTGTAGTGGAGGCTCCAGGGAGGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGCGTTGCCCTTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAG-CCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagggactgtaagtagtctttcgatcttttccttctgtttttataggtGCTGATATCCATACAGAGAATGAAGAGCCCCCTGT-TCCACTGCCATCCCCCTCAACTTCCGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtagtgtacgcagagtctgctacagttcaggatgtatcccagttggtgta Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagggactgtaagtagtctttcgatcttttccttctgtttttataggtGCTGATATCCATACAGAGAATGAAGAGCCCCCTGTTCCACTGCCATCCCCCTCAACTTCCGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtagtgtacgcagagtctgctacagttcaggatgtatcccagttggtgta Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagggactgtaagtagtctttcgatcttttccttctgtttttatagGTGCTGATATCCATACAGAGAATGAAGAGCCCCCTGTTCCACTGCCATCCCCCTCAACTTCCGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtagtgtacgcagagtctgctacagttcaggatgtatcccagttggtgta Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagggactgtaagtagtctttcgatcttttccttctgtttttatagGTGCTGATATCCATACAGAGAATGAAGAGCCCCCTGTTCCACTGCCATCCCCCTCAACTTCCGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtagtgtacgcagagtctgctacagttcaggatgtatcccagttggtgta Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagggactgtaagtagtctttcgatcttttccttctgtttttatagGTGCTGATATCCATACAGAGAATGAAGAGCCCCCTGTTCCACTGCCATCCCCCTCAACTTCCGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtagtgtacgcagagtctgctacagttcaggatgtatcccagttggtgta Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagggactgtaagtagtctttcgatcttttccttctgtttttatagGTGCTGATATCCATACAGAGAATGAAGAGCCCCCTGTTCCACTGCCATCCCCCTCAACTTCCGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtagtgtacgcagagtctgctacagttcaggatgtatcccagttggtgta Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagggactgtaagtagtctttcgatcttttccttctgtttttatagGTGCTGATATCCATACAGAGAATGAAGAGCCCCCTGTTCCACTGCCATCCCCCTCAACTTCCGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtagtgtacgcagagtctgctacagttcaggatgtatcccagttggtgta Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGGTG cagttagggactgtaagtagtctttcgatcttttccttctgtttttatagGTGCTGATATCCATACAGAGAATGAAGAGCCCCCTGTTCCACTGCCATCCCCCTCAACTTCCGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGGTAgtgtacgcagagtctgctacagttcaggatgtatcccagttggtgta #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAATGCTGCTCAG-AACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACTGCTAAATGCTGCTCAGCAATA-CACAGAGCCACCCTTGGCCCCACCGACCCCGGTAggtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACTGCTAAATGCTGCTCAGCAATACACAGAGCCACCCTTGGCCCCACCGACCCCGGTAggtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACTGCTAAATGCTGCTCAGCAATACACAGAGCCACCCTTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACTGCTAAATGCTGCTCAGCAATACACAGAGCCACCCTTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Pairagon GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACTGCTAAATGCTGCTCAGCAATACACAGAGCCACCCTTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACTGCTAAATGCTGCTCAGCAATACACAGAGCCACCCTTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACTGCTAAATGCTGCTCAGCAATACACAGAGCCACCCTTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACTGCTAAATGCTGCTCAGCAATACACAGAGCCACCCTTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCC-CTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagggCCAGGCCTGTCCCTAGGGGATACAGCCCCTCCAAAACT-GCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcaatgctatctatgtc Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagggCCAGGCCTGTCCCTAGGGGATACAGCCCCTCCAAAACTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcacctcctttctctgc Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCCTCCAAAACTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcaatgctatctatgtc Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCCTCCAAAACTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcaatgctatctatgtc Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCCTCCAAAACTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcaatgctatctatgtc Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCCTCCAAAACTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcaatgctatctatgtc Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCCTCCAAAACTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcaatgctatctatgtc Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCCTCCAAAACTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcaatgctatctatgtc #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGACCCGATGAAATTCTATACA-CATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcatttcactaaatttcacccctctcctcccccaccaggaGATGATTTGAATATTGACCCCATGAAATTTTATACCCCCACTAT-TCAGACACTATTTACATTGCATGCAggtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from CESAR gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcatttcactaaatttcacccctctcctcccccaccaggaGATGATTTGAATATTGACCCCATGAAATTTTATACCCCCACTATTCAGACACTATTTACATTGCATGCAggtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttcactaaatttcacccctctcctcccccaccagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCCACTATTCAGACACTATTTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttcactaaatttcacccctctcctcccccaccagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCCACTATTCAGACACTATTTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Pairagon ----------------------------------------------------GATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACA------AGACACTGTTCACATTACATGCAG TTGGTCTCCCTTTCATTTCACTAAATTTCACCCCTCTCCTCCCCCACCAGGAGATGATTTGAATATTGACCCCATGAAATTTTATAC------CCCCACTATTCAGACACTATTTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttcactaaatttcacccctctcctcccccaccagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCCACTATTCAGACACTATTTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttcactaaatttcacccctctcctcccccaccagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCCACTATTCAGACACTATTTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from GeneWise GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttcactaaatttcacccctctcctcccccaccagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCCACTATTCAGACACTATTTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa #### Noc3l_ID7673_2 --> 0 - 1 Original Alignment AGAAGAAATAAAAAGCAGGTCCCAAGCTTT-CGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAg ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCCGCAAGCTAA-AAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAggtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from CESAR AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAg ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCCGCAAGCTAAAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAggtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Spaln_aa2Genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCCGCAAGCTAAAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Spaln_nt2Genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCCGCAAGCTAAAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Pairagon AGAAGAAATAAAAAGCAGGTCCCAAGCTTTC-GCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCCGCAAGCTAA-AAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Exonerate_protein2genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCCGCAAGCTAAAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Exonerate_coding2genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCCGCAAGCTAAAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from GeneWise AAGGCGAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtag------AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCCGCAAGCTAAAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCT-GTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagatCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTCGTGTTCACTG-TTTTTGCACACCCCCAAAGCCAAGACCCCGC------CCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGaggcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagatCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTCGTGTTCACTGTTTTTGCACACCCCCAAAGCCAAGACCCCGCCCT------GGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGaggcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTCGTGTTCACTGTTTTTGCACACCCCCAAAG------CCAAGACCCCGCCCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCT-GTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTCGTGTTCACTG-TTTTTGCACACCCCCAAAGCCAAGACCCCGCCCT------GGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCT-GTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTCGTGTTCACTG-TTTTTGCACACCCCCAAAGCCAAGACCCCGCCCT------GGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTCGTGTTCACTGTTTTTGCACACCC------CCAAAGCCAAGACCCCGCCCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTCGTGTTCACTGTTTTTGCACACCC------CCAAAGCCAAGACCCCGCCCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAA---------------------------------------------------- ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTCGTGTTCACTGTTTTTGCACACCC------CCAAAGCCAAGACCCCGCCCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGGCAAGGCTTAAGCAGGATGCAGGAAAAAAGGGCACACTATATTCACAATT #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTG-AAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGCAGGTCAGGTT-AGGGCCAGTTCGAATC---------CATCAGATTggtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGCAGGTCAGGTTAGGGCCAGTTCGAATC---------CATCAGATTggtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGCAGGTCAGGTTAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Spaln_nt2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGCAGGTCAGGTTAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Pairagon CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGCAGGTCAGGTTAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGCAGGTCAGGTTAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGCAGGTCAGGTTAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGCAGGTCAGGTTAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTT-GAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaaggtTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAATGTTCGCAG-GGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaaggtTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAATGTTCGCAGGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAATGTTCGCAGGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAATGTTCGCAGGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAATGTTCGCAGGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAATGTTCGCAGGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAATGTTCGCAGGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAATGTTCGCAGGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct #### Nt5c2_ID10037_16 --> 1 - 0 Original Alignment gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCC-ATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcaggCATTTGGACAGCAGTAGC------------AATATTAGTCCTCATCC-AAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from CESAR gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcaggCATTTGGACAGCAGTAGCAAT------------ATTAGTCCTCATCCAAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from Spaln_aa2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcagGCATTTGGACAGCAGTAGCAAT------------ATTAGTCCTCATCCAAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from Spaln_nt2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTC-CATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcagGCATTTGGACAGCAGTAGCAAT------------ATTAGTCCTCATCCA-AGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from Pairagon GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTC-CATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcagGCATTTGGACAGCAGTAGCAAT------------ATTAGTCCTCATCCA-AGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from Exonerate_protein2genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAG---AGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcagGCATTTGGACAGCAGTAGCAATATTAGTCCTCATCCAAGACAGATTAAGGTAAGGAGATTGCATctgggggacaatattaggtgttagctgttccagta Alignment from Exonerate_coding2genome tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcaggcatttggacagcagtagcaatattagtcctcatccaagacagattaaggtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from GeneWise GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcagGCATTTGGACAGCAGTAGCAAT------------ATTAGTCCTCATCCAAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATC-ATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCCATCT-TGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from CESAR gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCCATCTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Spaln_aa2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCCATCTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Spaln_nt2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCCATCTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Pairagon GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCCATCTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCCATCTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCCATCTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from GeneWise GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCCATCTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCAT-TTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATCTTCTTTG-GGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATCTTCTTTGGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATCTTCTTTGGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATCTTCTTTGGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATCTTCTTTGGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATCTTCTTTGGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATCTTCTTTGGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG-ATA tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATCTTCTTTGGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGGCAAgtagacagcagacaccattaaaatggactgattgttacaacttttt #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAA-CAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGCTGAACCAAA-AGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from CESAR ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGCTGAACCAAAAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Spaln_aa2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGCTGAACCAAAAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Spaln_nt2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGCTGAACCAAAAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Pairagon ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGCTGAACCAAAAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Exonerate_protein2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGCTGAACCAAAAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Exonerate_coding2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGCTGAACCAAAAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from GeneWise ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGCTGAACCAAAAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACC-CTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagatTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTCGTCCGCA-CATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagatTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTCGTCCGCACATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTCGTCCGCACATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTCGTCCGCACATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTCGTCCGCACATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTCGTCCGCACATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTCGTCCGCACATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTCGTCCGCACATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTTGGAACCGAGAAC-CTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gagagaagagatcactggtcatatgattaatttttccccactctgtccagGGATGTTACTTTGGAACCGAGAATCTTGA-AAGTCTGGTCCTACACTTCTTGCAGcagtaaacgccccacatgatagtcatcagggtaacaattggattatacatat Alignment from CESAR GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gagagaagagatcactggtcatatgattaatttttccccactctgtccagGGATGTTACTTTGGAACCGAGAATCTTGAAAGTCTGGTCCTACACTTCTTGCAGcagtaaacgccccacatgatagtcatcagggtaacaattggattatacatat Alignment from Spaln_aa2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcactggtcatatgattaatttttccccactctgtccagGGATGTTACTTTGGAACCGAGAATCTTGAAAGTCTGGTCCTACACTTCTTGCAGCAgtaaacgccccacatgatagtcatcagggtaacaattggattatacatat Alignment from Spaln_nt2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcactggtcatatgattaatttttccccactctgtccagGGATGTTACTTTGGAACCGAGAATCTTGAAAGTCTGGTCCTACACTTCTTGCAGCAgtaaacgccccacatgatagtcatcagggtaacaattggattatacatat Alignment from Pairagon GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcactggtcatatgattaatttttccccactctgtccagGGATGTTACTTTGGAACCGAGAATCTTGAAAGTCTGGTCCTACACTTCTTGCAGCAgtaaacgccccacatgatagtcatcagggtaacaattggattatacatat Alignment from Exonerate_protein2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcactggtcatatgattaatttttccccactctgtccagGGATGTTACTTTGGAACCGAGAATCTTGAAAGTCTGGTCCTACACTTCTTGCAGCAgtaaacgccccacatgatagtcatcagggtaacaattggattatacatat Alignment from Exonerate_coding2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcactggtcatatgattaatttttccccactctgtccagGGATGTTACTTTGGAACCGAGAATCTTGAAAGTCTGGTCCTACACTTCTTGCAGCAgtaaacgccccacatgatagtcatcagggtaacaattggattatacatat Alignment from GeneWise GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcactggtcatatgattaatttttccccactctgtccagGGATGTTACTTTGGAACCGAGAATCTTGAAAGTCTGGTCCTACACTTCTTGCAGCAgtaaacgccccacatgatagtcatcagggtaacaattggattatacatat #### Nxf1_ID2355_15 --> 1 - 1 Original Alignment aAAAAACTTAGCT-GAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa cctgtaccatagaattctctgagagatttgtttgttcttttctctttcagaAAAAACCTAGCGCGAATATG-TAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCagtgagtggattctatgagaattcctggatagaggaatatggacaagcaag Alignment from CESAR aAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa cctgtaccatagaattctctgagagatttgtttgttcttttctctttcagaAAAAACCTAGCGCGAATATGTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCagtgagtggattctatgagaattcctggatagaggaatatggacaagcaag Alignment from Spaln_aa2Genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA cctgtaccatagaattctctgagagatttgtttgttcttttctctttcagAAAAAACCTAGCGCGAATATGTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagtggattctatgagaattcctggatagaggaatatggacaagcaag Alignment from Spaln_nt2Genome AAAAAACTTAGCT-GAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA cctgtaccatagaattctctgagagatttgtttgttcttttctctttcagAAAAAACCTAGCGCGAATATGT-AAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagtggattctatgagaattcctggatagaggaatatggacaagcaag Alignment from Pairagon AAAAAACTTAGC-TGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA cctgtaccatagaattctctgagagatttgtttgttcttttctctttcagAAAAAACCTAGCGCGAATATGT-AAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagtggattctatgagaattcctggatagaggaatatggacaagcaag Alignment from Exonerate_protein2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA cctgtaccatagaattctctgagagatttgtttgttcttttctctttcagAAAAAACCTAGCGCGAATATGTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagtggattctatgagaattcctggatagaggaatatggacaagcaag Alignment from Exonerate_coding2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA cctgtaccatagaattctctgagagatttgtttgttcttttctctttcagAAAAAACCTAGCGCGAATATGTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagtggattctatgagaattcctggatagaggaatatggacaagcaag Alignment from GeneWise AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA cctgtaccatagaattctctgagagatttgtttgttcttttctctttcagAAAAAACCTAGCGCGAATATGTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagtggattctatgagaattcctggatagaggaatatggacaagcaag #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTC-ACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg agactccttagctcctcaggccatttgaccttttccttttctgttgccagtaGATGGGAAGTCTCGAGACTCTCTACATGCCTTTCGCAAGGACAT-CATTGCAGTTCCTGCAAGCAATACGgggtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg agactccttagctcctcaggccatttgaccttttccttttctgttgccagtaGATGGGAAGTCTCGAGACTCTCTACATGCCTTTCGCAAGGACATCATTGCAGTTCCTGCAAGCAATACGgggtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTCGCAAGGACATCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTCGCAAGGACATCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTG-CTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTCGCAAGGACA-TCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Exonerate_protein2genome AAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgTTGCCAGTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTCGCAAGGACATCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Exonerate_coding2genome AAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgTTGCCAGTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTCGCAAGGACATCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from GeneWise TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTCGCAAGGACATCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt tagtgctctcagaggaatataattcttggttgcatattttatattcacagaaCCACTAGATGTGGTGGGTCCGTGTGATGC-GTATATCAATGGTGCTATAACAACACACCAGCTTCCCATCGCTGAAGCTATGCTGACCTGCAGGCATAAGttgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from CESAR agCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt tagtgctctcagaggaatataattcttggttgcatattttatattcacagaaCCACTAGATGTGGTGGGTCCGTGTGATG-CGTATATCAATGGTGCTATAACAACACACCAGCTTCCCATCGCTGAAGCTATGCTGACCTGCAGGCATAAGttgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCCGTGTGATGCGTATATCAATGGTGCTATAACAACACACCAGCTTCCCATCGCTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCCGTGTGATGCGTATATCAATGGTGCTATAACAACACACCAGCTTCCCATCGCTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Pairagon AGCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCCGTGTGATGC-GTATATCAATGGTGCTATAACAACACACCAGCTTCCCATCGCTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCCGTGTGATGCGTATATCAATGGTGCTATAACAACACACCAGCTTCCCATCGCTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCCGTGTGATGCGTATATCAATGGTGCTATAACAACACACCAGCTTCCCATCGCTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCCGTGTGATGCGTATATCAATGGTGCTATAACAACACACCAGCTTCCCATCGCTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCAACCCGAGAACTT-CTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtaggACAGAGGTGATGTTTATGGCAGCCCGAGAACTGCGTCCGTATCC-GCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtaggACAGAGGTGATGTTTATGGCAGCCCGAGAACTGCGTCCGTATCCGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGCGTCCGTATCCGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGCGTCCGTATCCGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGCGTCCGTATCCGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTT tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGCGTCCGTATCCGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGCGTTttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTT tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGCGTCCGTATCCGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGCGTTttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATACGG tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGCGTCCGTATCCGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGCGTTTTGTCATTCTTTtcctgctttgttggctgacagaaactgagtt #### Pcgf6_ID10083_4 --> 1 - 1 Original Alignment gTTGGACCGGCAGTTACAAGAC-ATAGTATACAAATTAGTGATCAATCTAGAGGAAa aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcaggTTGGACCGGCAGTTACAAGACCATAGTAT-CAAGTTAGTGATTGTTCTAGAGGAGagtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from CESAR gTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAa aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcaggTTGGACCGGCAGTTACAAGACCATAGTATCAAGTTAGTGATTGTTCTAGAGGAGagtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Spaln_aa2Genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGTTACAAGACCATAGTATCAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Spaln_nt2Genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGTTACAAGACCATAGTATCAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Pairagon GTTGGACCGGCAGTTACAAGA-CATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGTTACAAGACCATAGTAT-CAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Exonerate_protein2genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGTTACAAGACCATAGTATCAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Exonerate_coding2genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGTTACAAGACCATAGTATCAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from GeneWise GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGTTACAAGACCATAGTATCAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc #### Pcgf6_ID10084_3 --> 2 - 2 Original Alignment ttTGTAAAAGCTGCATT-GTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagttTGTAAAAGCTGCATTCGTGAGAC-TTTTTACTATAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAaggtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from CESAR ttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagttTGTAAAAGCTGCATTCGTGAGACTTTTTACTATAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAaggtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Spaln_aa2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTCGTGAGACTTTTTACTATAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Spaln_nt2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTCGTGAGACTTTTTACTATAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Pairagon TTTGTAAAAGCTGCATT-GTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTCGTGAGAC-TTTTTACTATAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Exonerate_protein2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTCGTGAGACTTTTTACTATAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Exonerate_coding2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTCGTGAGACTTTTTACTATAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from GeneWise TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTCGTGAGACTTTTTACTATAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCG-GACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taagccacagaatgcattaccatacacctttctcctgtattgctttttagaCTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATT-TGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAggtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taagccacagaatgcattaccatacacctttctcctgtattgctttttagaCTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAggtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttagacctcattttgcttacagAGCGTCCAACCTCGATGCAG-ATCACCCATGCATgtaaggatgtggaggaattgctgggcaatgagcactggttctaagagcac Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttagacctcattttgcttacagAGCGTCCAACCTCGATGCAGATCACCCATGCATgtaaggatgtggaggaattgctgggcaatgagcactggttctaagagcac Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttagacctcattttgcttacagAGCGTCCAACCTCGATGCAGATCACCCATGCATgtaaggatgtggaggaattgctgggcaatgagcactggttctaagagcac Alignment from Spaln_nt2Genome AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttagacctcattttgcttacagAGCGTCCAACCTCGATGCAG-ATCACCCATGCATgtaaggatgtggaggaattgctgggcaatgagcactggttctaagagcac Alignment from Pairagon AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttagacctcattttgcttacagAGCGTCCAACCTCGATGCAG-ATCACCCATGCATgtaaggatgtggaggaattgctgggcaatgagcactggttctaagagcac Alignment from Exonerate_protein2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttagacctcattttgcttacagAGCGTCCAACCTCGATGCAGATCACCCATGCATgtaaggatgtggaggaattgctgggcaatgagcactggttctaagagcac Alignment from Exonerate_coding2genome atgggccttaatactataccccgccaacttagacctcattttgcttacagagcgtccaacctcgatgcagatcacccatgcatgtaaggatgtggaggaattgctgggcaatgagcactggttctaagagcac Alignment from GeneWise atgggccttaatactataccccgccaacttagacctcattttgcttacagagcgtccaacctcgatgcagatcacccatgcatgtaaggatgtggaggaattgctgggcaatgagcactggttctaagagcac #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATC-TTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTTGCTA-CATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCaggtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTTGCTACATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCaggtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTTGCTACATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTTGCTACATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCA-TCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTTGCTA-CATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTTGCTACATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTTGCTACATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTTGCTACATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCT-GACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTCGACCCTGGTC-CACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgcttctt Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTCGACCCTGGTCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactatctgtg Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTCGACCCTGGTCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgcttctt Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTCGACCCTGGTCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgcttctt Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCT-GACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTCGACCCTGGTC-CACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgcttctt Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTCGACCCTGGTCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgcttctt Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTCGACCCTGGTCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgcttctt Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTCGACCCTGGTCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgcttctt #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATT-CCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagcaTTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCCAGGGG-ACAGTACACCAATCTGCATTTCCCAGCCCGT------AGACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagcaTTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCCAGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCCAGGGGACAGTACACCAATCTGCATTTCCCAGCCCGT------AGACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTA------TTTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCCAGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTA------GACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTA------TTTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCCAGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTA------GACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCCAGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCCAGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATC----------------------------------------------------- atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCCAGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAGTACTTTGGAATGCCAGGTGTTTGGCAATTATCTATGGTGGTTGCCTGAC #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAG-AGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGCAGAC-GGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactgagcctggccctct Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGCAGACGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacacttgccgctgctctta Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGCAGACGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactgagcctggccctct Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGCAGACGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactgagcctggccctct Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGCAGACGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactgagcctggccctct Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGCAGACGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactgagcctggccctct Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGCAGACGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactgagcctggccctct Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGCAGACGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactgagcctggccctct #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATC-AAAATAGGGACAGTAGTAAAG aacagccctatccatgccccctgtagtccctgtcgatttgggtgttatagaTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCCAAAA-TGGAACAGTAGTAAAGgtaagaactgcatattcttttgagaaacacattagctgttagcttataag Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgccccctgtagtccctgtcgatttgggtgttatagaTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagaactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgccccctgtagtccctgtcgatttgggtgttatagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagaactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgccccctgtagtccctgtcgatttgggtgttatagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagaactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Pairagon ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgccccctgtagtccctgtcgatttgggtgttatagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagaactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Exonerate_protein2genome aacagccctatccatgccccctgtagtccctgtcgatttgggtgttatagatcaattattgcagctccattccttagatatcatgacatccaaaatggaacagtagtaaaggtaagaactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgccccctgtagtccctgtcgatttgggtgttatagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagaactgcatattcttttgagaaacacattagctgttagcttataag #### Pdcd11_ID10119_13 --> 0 - 0 Original Alignment GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAG-GAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaagacctactgccgcaaagaggtaagaacttcaactcctctacagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCCAAGCGAAA-AATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCCGGTGTTGAAAGCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGTCAGgtaacaacccaatgactttgactaatggtaacagcatctgagggggaagg Alignment from CESAR GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaagacctactgccgcaaagaggtaagaacttcaactcctctacagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCCAAGCGAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCCGGTGTTGAAAGCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGTCAGgtaacaacccaatgactttgactaatggtaacagcatctgagggggaagg Alignment from Spaln_aa2Genome ACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tgaagACCTACTGCCGCAAAGAGGTAAGAACTTCAACT---CCTCTACAGGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCCAAGCGAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCCGGTGTTGAAAGCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGTCAGgtaacaacccaatgactttgactaatggtaacagcatctgagggggaagg Alignment from Spaln_nt2Genome AGCACATCCCGGACCCAGAGACGGTCTTTTACAC-TGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaagACCTACTGCCGCAAAGAGGTAAGAACTTCAACTCCTCTACAGGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCCAAGCGAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCCGGTGTTGAAAGCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGTCAGgtaacaacccaatgactttgactaatggtaacagcatctgagggggaagg Alignment from Pairagon GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaagacctactgccgcaaagaggtaagaacttcaactcctctacagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCCAAGCGAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCCGGTGTTGAAAGCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGTCAGgtaacaacccaatgactttgactaatggtaacagcatctgagggggaagg Alignment from Exonerate_protein2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaagacctactgccgcaaagaggtaagaacttcaactcctctacagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCCAAGCGAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCCGGTGTTGAAAGCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGTCAGgtaacaacccaatgactttgactaatggtaacagcatctgagggggaagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaagacctactgccgcaaagaggtaagaacttcaactcctctacagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCCAAGCGAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCCGGTGTTGAAAGCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGTCAGgtaacaacccaatgactttgactaatggtaacagcatctgagggggaagg #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAAC-CTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagcATCAACCCCATGAAGAACCCTGA-AGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagcATCAACCCCATGAAGAACCCTGAAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCCTGAAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCCTGAAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCCTGAAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCCTGAAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCCTGAAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAA-GAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAACGAGA-CTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAACGAGACTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAACGAGACTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAACGAGACTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAACGAGACTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAACGAGACTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAACGAGACTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAACGAGACTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGC-ATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCCATCGAAA-GGCACTGATGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from CESAR AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCCATCGAAAGGCACTGATGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCCATCGAAAGGCACTGATGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCCATCGAAAGGCACTGATGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Pairagon AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCCATCGAAAGGCACTGATGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCCATCGAAAGGCACTGATGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGAGCTGTCACGCCATCGAAAGGCACTGATGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAA-CGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACCGCACGG-TGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACCGCACGGTGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACCGCACGGTGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACCGCACGGTGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAA-CGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACCGCAC-GGTGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACCGCACGGTGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACCGCACGGTGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACCGCACGGTGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGG-CTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCCTGAAGC-CACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCCTGAAGCCACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCCTGAAGCCACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCCTGAAGCCACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCCTGAAGCCACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCCTGAAGCCACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCCTGAAGCCACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCCTGAAGCCACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGAT-TACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc gatacctttgatgctatttagtattgccaatgaatcgtcttttcttttagGAGATCATATTCTACAAAATTACTGACCTACATTT-GCATGGGAAGGAAGAACTCAATGTGATTccgtaagtggtcacttggagccagtttaccttcctatgccccaatgatataa Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc gatacctttgatgctatttagtattgccaatgaatcgtcttttcttttagGAGATCATATTCTACAAAATTACTGACCTACATTTGCATGGGAAGGAAGAACTCAATGTGATTccgtaagtggtcacttggagccagtttaccttcctatgccccaatgatataa Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC gatacctttgatgctatttagtattgccaatgaatcgtcttttcttttagGAGATCATATTCTACAAAATTACTGACCTACATTTGCATGGGAAGGAAGAACTCAATGTGATTCCgtaagtggtcacttggagccagtttaccttcctatgccccaatgatataa Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGAT-TACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC gatacctttgatgctatttagtattgccaatgaatcgtcttttcttttagGAGATCATATTCTACAAAATTACTGACCTACA-TTTGCATGGGAAGGAAGAACTCAATGTGATTCCgtaagtggtcacttggagccagtttaccttcctatgccccaatgatataa Alignment from Pairagon GAAATCATCTTCTATAAAAT----------CATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC gatacctttgatgctatttagtattgccaatgaatcgtcttttcttttagGAGATCATATTCTACAAAATTACTGACCTACA----------TTTGCATGGGAAGGAAGAACTCAATGTGATTCCgtaagtggtcacttggagccagtttaccttcctatgccccaatgatataa Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC gatacctttgatgctatttagtattgccaatgaatcgtcttttcttttagGAGATCATATTCTACAAAATTACTGACCTACATTTGCATGGGAAGGAAGAACTCAATGTGATTCCgtaagtggtcacttggagccagtttaccttcctatgccccaatgatataa Alignment from Exonerate_coding2genome gatacctttgatgctatttagtattgccaatgaatcgtcttttcttttaggagatcatattctacaaaattactgacctacatttgcatgggaaggaagaactcaatgtgattccgtaagtggtcacttggagccagtttaccttcctatgccccaatgatataa Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC gatacctttgatgctatttagtattgccaatgaatcgtcttttcttttagGAGATCATATTCTACAAAATTACTGACCTACATTTGCATGGGAAGGAAGAACTCAATGTGATTCCgtaagtggtcacttggagccagtttaccttcctatgccccaatgatataa #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATGCAA-CATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag tctagattaaagactttcttcatttgagtaattttgatcattctttataggTCTGTCATAGACACAATGCAACCATGCAG-ATATGTCTATGACATCTGTCATGTGGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCAGACaggtgagttgatgaattcaagggtctgactgacacatgttgctcactttagc Alignment from CESAR gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag tctagattaaagactttcttcatttgagtaattttgatcattctttataggTCTGTCATAGACACAATGCAACCATGCAGATATGTCTATGACATCTGTCATGTGGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCAGACaggtgagttgatgaattcaagggtctgactgacacatgttgctcactttagc Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctagattaaagactttcttcatttgagtaattttgatcattctttatagGTCTGTCATAGACACAATGCAACCATGCAGATATGTCTATGACATCTGTCATGTGGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCAGACAGgtgagttgatgaattcaagggtctgactgacacatgttgctcactttagc Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctagattaaagactttcttcatttgagtaattttgatcattctttatagGTCTGTCATAGACACAATGCAACCATGCAGATATGTCTATGACATCTGTCATGTGGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCAGACAGgtgagttgatgaattcaagggtctgactgacacatgttgctcactttagc Alignment from Pairagon GTCCGTCATAGACACAATGCAAC---------ATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctagattaaagactttcttcatttgagtaattttgatcattctttatagGTCTGTCATAGACACAATGCAACCATGCAGATAT---------GTCTATGACATCTGTCATGTGGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCAGACAGgtgagttgatgaattcaagggtctgactgacacatgttgctcactttagc Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctagattaaagactttcttcatttgagtaattttgatcattctttatagGTCTGTCATAGACACAATGCAACCATGCAGATATGTCTATGACATCTGTCATGTGGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCAGACAGgtgagttgatgaattcaagggtctgactgacacatgttgctcactttagc Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctagattaaagactttcttcatttgagtaattttgatcattctttatagGTCTGTCATAGACACAATGCAACCATGCAGATATGTCTATGACATCTGTCATGTGGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCAGACAGgtgagttgatgaattcaagggtctgactgacacatgttgctcactttagc Alignment from GeneWise GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctagattaaagactttcttcatttgagtaattttgatcattctttatagGTCTGTCATAGACACAATGCAACCATGCAGATATGTCTATGACATCTGTCATGTGGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCAGACAGgtgagttgatgaattcaagggtctgactgacacatgttgctcactttagc #### Peo1_ID9267_4 --> 1 - 0 Original Alignment gATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATT-CACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA tgctaaggtatgtgggtactttggtccacctcagctctgctgtcccacagaATTGCAGCCCAAGACTACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGATAACAGTTGCCATGTGACTCTGGTCATTCCACTCTC-GAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCGTCCACCAAAgtgagttagcactaagggataacagtaggtcatgtactaaacaggatgaa Alignment from CESAR gATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA tgctaaggtatgtgggtactttggtccacctcagctctgctgtcccacagaATTGCAGCCCAAGACTACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGATAACAGTTGCCATGTGACTCTGGTCATTCCACTCTCGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCGTCCACCAAAgtgagttagcactaagggataacagtaggtcatgtactaaacaggatgaa Alignment from Spaln_aa2Genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA tgctaaggtatgtgggtactttggtccacctcagctctgctgtcccacagAATTGCAGCCCAAGACTACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGATAACAGTTGCCATGTGACTCTGGTCATTCCACTCTCGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCGTCCACCAAAgtgagttagcactaagggataacagtaggtcatgtactaaacaggatgaa Alignment from Spaln_nt2Genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA tgctaaggtatgtgggtactttggtccacctcagctctgctgtcccacagAATTGCAGCCCAAGACTACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGATAACAGTTGCCATGTGACTCTGGTCATTCCACTCTCGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCGTCCACCAAAgtgagttagcactaagggataacagtaggtcatgtactaaacaggatgaa Alignment from Pairagon GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA tgctaaggtatgtgggtactttggtccacctcagctctgctgtcccacagAATTGCAGCCCAAGACTACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGATAACAGTTGCCATGTGACTCTGGTCATTCCACTCTCGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCGTCCACCAAAgtgagttagcactaagggataacagtaggtcatgtactaaacaggatgaa Alignment from Exonerate_protein2genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA tgctaaggtatgtgggtactttggtccacctcagctctgctgtcccacagAATTGCAGCCCAAGACTACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGATAACAGTTGCCATGTGACTCTGGTCATTCCACTCTCGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCGTCCACCAAAgtgagttagcactaagggataacagtaggtcatgtactaaacaggatgaa Alignment from Exonerate_coding2genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA tgctaaggtatgtgggtactttggtccacctcagctctgctgtcccacagAATTGCAGCCCAAGACTACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGATAACAGTTGCCATGTGACTCTGGTCATTCCACTCTCGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCGTCCACCAAAgtgagttagcactaagggataacagtaggtcatgtactaaacaggatgaa Alignment from GeneWise GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA tgctaaggtatgtgggtactttggtccacctcagctctgctgtcccacagAATTGCAGCCCAAGACTACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGATAACAGTTGCCATGTGACTCTGGTCATTCCACTCTCGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCGTCCACCAAAgtgagttagcactaagggataacagtaggtcatgtactaaacaggatgaa #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACC-TACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccaggTACACCTGCCCCTTCATTGAGAAGTTCTCGATTGAAATAGAGACCCTACTACT-GCCGGATGGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTggtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccaggTACACCTGCCCCTTCATTGAGAAGTTCTCGATTGAAATAGAGACCCTACTACTGCCGGATGGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTggtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTGAAATAGAGACCCTACTACTGCCGGATGGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTGAAATAGAGACCCTACTACTGCCGGATGGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGA-CCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTGAAATAGAGACCCTACTAC-TGCCGGATGGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTGAAATAGAGACCCTACTACTGCCGGATGGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTGAAATAGAGACCCTACTACTGCCGGATGGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from GeneWise GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTGAAATAGAGACCCTACTACTGCCGGATGGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAG-AACAGCTCCGAGGAAGAATTCTTTGATGCCCATg atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccaggtGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACGTTGCCCGAGACTCCAAACAACAGCT-TGAGGAAGACTTCTTTGATCCCCATggtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccaggtGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACGTTGCCCGAGACTCCAAACAACAGCTTGAGGAAGACTTCTTTGATCCCCATggtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACGTTGCCCGAGACTCCAAACAACAGCTTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACGTTGCCCGAGACTCCAAACAACAGCTTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAG-AACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACGTTGCCCGAGACTCCAAACAACAGCT-TGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACGTTGCCCGAGACTCCAAACAACAGCTTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACGTTGCCCGAGACTCCAAACAACAGCTTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from GeneWise GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACGTTGCCCGAGACTCCAAACAACAGCTTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTC-TTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCCTTCCTCA-ACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCaagtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCCTTCCTCAACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCaagtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCCTTCCTCAACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCCTTCCTCAACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCT-CTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCCTTCCTCA-ACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCCTTCCTCAACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCCTTCCTCAACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCCTTCCTCAACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat #### Pitpnm1_ID320_17 --> 0 - 0 Original Alignment GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGC-ACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGACACAC-GGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from CESAR GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGACACACGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Spaln_aa2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGACACACGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Spaln_nt2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACA-GGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCG-ACACACGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Pairagon GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACG-CACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGACACAC-GGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Exonerate_protein2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGACACACGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Exonerate_coding2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGACACACGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from GeneWise GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGACACACGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCG-AGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCACAGTG-CACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGgtaatgtgtatttttttaaccttagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCACAGTGCACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGgtctgactattgtgttttgttctagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCACAGTGCACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGGTAATGTGTATTTTTTTAACCTTAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCG-AGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCACAGTG-CACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGGTAATGTGTATTTTTTTAACCTTAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCG-AGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCACAGTG-CACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGGTAATGTGTATTTTTTTAACCTTAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTGGATGTCTACGTCATGACA caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCACAGTGCACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGGTAATGTGTATTTTTTTAACCttaggttgatgtctatgtcatgacacagc Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTGGATGTCTACGTCATGACA caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCACAGTGCACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGGTAATGTGTATTTTTTTAACCttaggttgatgtctatgtcatgacacagc Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCACAGTGCACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGgtaatgtgtatttttttaaccttagGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCA-GGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACCGGAGAAGAGgtaagtctattgtgttttgttctagGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACTAACAGTTCTCGGCC-TCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagcaagttagcaggtaactcagctcctgtgaaacaccaacttactct Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACCGGAGAAGAGgtctgactattgtgttttgttctagGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACTAACAGTTCTCGGCCTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagcaagttagcaggtaactcagctcctgtgaaacaccaacttactct Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGGTAAGTCTATTGTGTTTTGTTCTAgGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACTAACAGTTCTCGGCCTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcaagttagcaggtaactcagctcctgtgaaacaccaacttactct Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGGTAAGTCTATTGTGTTTTGTTCTAGGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACTAACAGTTCTCGGCCTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcaagttagcaggtaactcagctcctgtgaaacaccaacttactct Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGGTAAGTCTATTGTGTTTTGTTCTAGGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACTAACAGTTCTCGGCCTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcaagttagcaggtaactcagctcctgtgaaacaccaacttactct Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGgtaagtctattgtgttttgttctaggttgat------GTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACTAACAGTTCTCGGCCTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcaagttagcaggtaactcagctcctgtgaaacaccaacttactct Alignment from Exonerate_coding2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGgtaagtctattgtgttttgttctaggttgat------GTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACTAACAGTTCTCGGCCTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcaagttagcaggtaactcagctcctgtgaaacaccaacttactct Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGgtaagtctattgtgttttgttctagGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACTAACAGTTCTCGGCCTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcaagttagcaggtaactcagctcctgtgaaacaccaacttactct #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACC-CAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCCAAGTGG-AAACTTTAGCACTTTTGTTAAGTGCatgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCCAAGTGGAAACTTTAGCACTTTTGTTAAGTGCatgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCCAAGTGGAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCCAAGTGGAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGAC-CCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCCAAGTGG-AAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCCAAGTGGAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCCAAGTGGAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCCAAGTGGAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment gGAACTGACAGAGATTAATCGGCGG-CACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatagttcagcagttctactttgcctcctctaggGAATTGACAGAGATTAACCGGCAACCACATCA-TGAGTCCATAAACTCCAACAGACGGgtaagtgggtcttatctctctgtcaccaacgggagccatcctttactatt Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatagttcagcagttctactttgcctcctctaggGAATTGACAGAGATTAACCGGCAACCACATCATGAGTCCATAAACTCCAACAGACGGgtaagtgggtcttatctctctgtcaccaacgggagccatcctttactatt Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatagttcagcagttctactttgcctcctctagGGAATTGACAGAGATTAACCGGCAACCACATCATGAGTCCATAAACTCCAACAGACGGgtaagtgggtcttatctctctgtcaccaacgggagccatcctttactatt Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatagttcagcagttctactttgcctcctctagGGAATTGACAGAGATTAACCGGCAACCACATCATGAGTCCATAAACTCCAACAGACGGgtaagtgggtcttatctctctgtcaccaacgggagccatcctttactatt Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGG-CACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatagttcagcagttctactttgcctcctctagGGAATTGACAGAGATTAACCGGCAACCACATCA-TGAGTCCATAAACTCCAACAGACGGgtaagtgggtcttatctctctgtcaccaacgggagccatcctttactatt Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatagttcagcagttctactttgcctcctctagGGAATTGACAGAGATTAACCGGCAACCACATCATGAGTCCATAAACTCCAACAGACGGgtaagtgggtcttatctctctgtcaccaacgggagccatcctttactatt Alignment from Exonerate_coding2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatagttcagcagttctactttgcctcctctagGGAATTGACAGAGATTAACCGGCAACCACATCATGAGTCCATAAACTCCAACAGACGGgtaagtgggtcttatctctctgtcaccaacgggagccatcctttactatt Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatagttcagcagttctactttgcctcctctagGGAATTGACAGAGATTAACCGGCAACCACATCATGAGTCCATAAACTCCAACAGACGGgtaagtgggtcttatctctctgtcaccaacgggagccatcctttactatt #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAG-AGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCAGAACCAAAAAGCACAGCAGCTTGTTGG-GCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtgccatcttcccctgctccacagGCGCA Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCAGAACCAAAAAGCACAGCAGCTTGTTGGGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtttttattgtcctttcttcacagGCGCA Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCAGAACCAAAAAGCACAGCAGCTTGTTGGGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtgccatcttcccctgctccacagGCGCA Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAG-AGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCAGAACCAAAAAGCACAGCAGCTTGTTGG-GCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtgccatcttcccctgctccacagGCGCA Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAG-AGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCAGAACCAAAAAGCACAGCAGCTTGTTGG-GCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtgccatcttcccctgctccacagGCGCA Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCAGAACCAAAAAGCACAGCAGCTTGTTGGGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtgccatcttcccctgctccacagGCGCA Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCAGAACCAAAAAGCACAGCAGCTTGTTGGGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtgccatcttcccctgctccacagGCGCA Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGA---------------------------------------------CAGGCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCAGAACCAAAAAGCACAGCAGCTTGTTGGGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGGTAACCGATCGGTGGGGGGCGGTGCCATCTTCCCCTGCTCCACAGGCGCA #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCC-TCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCCTCACTCC-CATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAggtcagtttgggggctgagctctaacacagttacaaagttgtgtattgtta Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCCTCACTCCCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAggtcagtttgggggctgagctctaacacagttacaaagttgtgttccatcc Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCCTCACTCCCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtattgtta Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCC-TCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCCTCAC-TCCCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtattgtta Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCCTCACTCCCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtattgtta Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCCTCACTCCCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtattgtta Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCCTCACTCCCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtattgtta Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCCTCACTCCCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtattgtta #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGAC-ATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACCATGTTTGGCC-TCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGAC-ATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACCATGTTTGGCC-TCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACCATGTTTGGCCTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACCATGTTTGGCCTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGA-CATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACCATGTTTGGCCT-CCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACCATGTTTGGCCTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACCATGTTTGGCCTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACCATGTTTGGCCTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATG-GCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagaGCAAAGCAGCAC---AAGATGCGCTG-GTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagaGCAAAGCAGCAC---AAGATGCGCTGGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGCGCTGGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATG-GCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCA---CAAGATGCGCTG-GTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCA---CAAGATGCGCTGGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGCGCTGGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGCGCTGGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGCGCTGGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tgtttaaccaagattctcatcttctcatttcctctcccaactgtgcgcagtGAATCCATTCGCCCTGATCGAATTTCCCT-GGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGatgtaattaagttgttccagggggtggaccctgactctggtgatcctgagta Alignment from CESAR tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tgtttaaccaagattctcatcttctcatttcctctcccaactgtgcgcagtGAATCCATTCGCCCTGATCGAATTTCCCTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGatgtaattaagttgttccagggggtggaccctgactctggtgatcctgagta Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttaaccaagattctcatcttctcatttcctctcccaactgtgcgcagTGAATCCATTCGCCCTGATCGAATTTCCCTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtaattaagttgttccagggggtggaccctgactctggtgatcctgagta Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttaaccaagattctcatcttctcatttcctctcccaactgtgcgcagTGAATCCATTCGCCCTGATCGAATTTCCCTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtaattaagttgttccagggggtggaccctgactctggtgatcctgagta Alignment from Pairagon TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttaaccaagattctcatcttctcatttcctctcccaactgtgcgcagTGAATCCATTCGCCCTGATCGAATTTCCCTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtaattaagttgttccagggggtggaccctgactctggtgatcctgagta Alignment from Exonerate_protein2genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttaaccaagattctcatcttctcatttcctctcccaactgtgcgcagTGAATCCATTCGCCCTGATCGAATTTCCCTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtaattaagttgttccagggggtggaccctgactctggtgatcctgagta Alignment from Exonerate_coding2genome tgtttaaccaagattctcatcttctcatttcctctcccaactgtgcgcagtgaatccattcgccctgatcgaatttccctggaagtttttgagcggttcttgaataaactgtgtctgcgaccagatattgacaagatcgtgctggagatgtaattaagttgttccagggggtggaccctgactctggtgatcctgagta Alignment from GeneWise TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttaaccaagattctcatcttctcatttcctctcccaactgtgcgcagTGAATCCATTCGCCCTGATCGAATTTCCCTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtaattaagttgttccagggggtggaccctgactctggtgatcctgagta #### Plcb3_ID1925_6 --> 1 - 2 Original Alignment aTACACGAAGCTGAAGCTGCAGGTGAAC-CAGGATGGACGGATTCCGGTCAAGaa tttgtttcacagacaaaacccagggaccatgtgtgcttcttgcgctacagaTACACAAAGCTAAAGCTGCAGGGCAATCCAGGATG-GCGGATTCCAGTCAAGaagtgtgctcccatgcccatagcatcttcctagcatccctagcatccccact Alignment from CESAR aTACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGaa tttgtttcacagacaaaacccagggaccatgtgtgcttcttgcgctacagaTACACAAAGCTAAAGCTGCAGGGCAATCCAGGATGGCGGATTCCAGTCAAGaagtgtgctcccatgcccatagcatcttcctagcatccctagcatccccact Alignment from Spaln_aa2Genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcacagacaaaacccagggaccatgtgtgcttcttgcgctacagATACACAAAGCTAAAGCTGCAGGGCAATCCAGGATGGCGGATTCCAGTCAAGAAgtgtgctcccatgcccatagcatcttcctagcatccctagcatccccact Alignment from Spaln_nt2Genome ATACACGAAGCTGAAGCTGCAGGTGAA-CCAGGATGGACGGATTCCGGTCAAGAA tttgtttcacagacaaaacccagggaccatgtgtgcttcttgcgctacagATACACAAAGCTAAAGCTGCAGGGCAATCCAGGATGG-CGGATTCCAGTCAAGAAgtgtgctcccatgcccatagcatcttcctagcatccctagcatccccact Alignment from Pairagon ATACACGAAGCTGAAGCTGCAGGTGAA-CCAGGATGGACGGATTCCGGTCAAGAA tttgtttcacagacaaaacccagggaccatgtgtgcttcttgcgctacagATACACAAAGCTAAAGCTGCAGGGCAATCCAGGATGG-CGGATTCCAGTCAAGAAgtgtgctcccatgcccatagcatcttcctagcatccctagcatccccact Alignment from Exonerate_protein2genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcacagacaaaacccagggaccatgtgtgcttcttgcgctacagATACACAAAGCTAAAGCTGCAGGGCAATCCAGGATGGCGGATTCCAGTCAAGAAgtgtgctcccatgcccatagcatcttcctagcatccctagcatccccact Alignment from Exonerate_coding2genome tttgtttcacagacaaaacccagggaccatgtgtgcttcttgcgctacagatacacaaagctaaagctgcagggcaatccaggatggcggattccagtcaagaagtgtgctcccatgcccatagcatcttcctagcatccctagcatccccact Alignment from GeneWise ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcacagacaaaacccagggaccatgtgtgcttcttgcgctacagATACACAAAGCTAAAGCTGCAGGGCAATCCAGGATGGCGGATTCCAGTCAAGAAgtgtgctcccatgcccatagcatcttcctagcatccctagcatccccact #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGG-CTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACCTGGAGG-GAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACCTGGAGGGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACCTGGAGGGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGC-TGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACCTGGAGG-GAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACCTGGAGGGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACCTGGAGGGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Exonerate_coding2genome gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcaggaccctaagattcgagaagtttttggcggccctgatacacgacctggagggagattgatgacagtggttgctgggccggatttagtaactaccacattcttgaacttcatggctgtgcaggatggcacagtcaaggtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACCTGGAGGGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCC-ATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCACATCAGAG-CACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCACATCAGAGCACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCACATCAGAGCACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTC-CATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCACATCAGAG-CACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTC-CATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCACATCAGAG-CACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCACATCAGAGCACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Exonerate_coding2genome tagtactgagcacgaccttgtacctttactcattctgcccccttacctaggaggtggacacactggatattagctcacatcagagcacaagaacaggtcgttatgctcgcctgcccaaagtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCACATCAGAGCACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAag gcattgatcagtaacctgtcttatcccctgcttttaacctttgttttcagcTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGC-CATACTGACACAGAGGaggtaaccgataattgtgaaccacaagaggaatggaccatatttactagcaa Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gcattgatcagtaacctgtcttatcccctgcttttaacctttgttttcagcTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCCATACTGACACAGAGGaggtaaccgataattgtgaaccacaagaggaatggaccatatttactagcaa Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcattgatcagtaacctgtcttatcccctgcttttaacctttgttttcagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCCATACTGACACAGAGGAGgtaaccgataattgtgaaccacaagaggaatggaccatatttactagcaa Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcattgatcagtaacctgtcttatcccctgcttttaacctttgttttcagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCCATACTGACACAGAGGAGgtaaccgataattgtgaaccacaagaggaatggaccatatttactagcaa Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcattgatcagtaacctgtcttatcccctgcttttaacctttgttttcagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCCATACTGACACAGAGGAGgtaaccgataattgtgaaccacaagaggaatggaccatatttactagcaa Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcattgatcagtaacctgtcttatcccctgcttttaacctttgttttcagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCCATACTGACACAGAGGAGgtaaccgataattgtgaaccacaagaggaatggaccatatttactagcaa Alignment from Exonerate_coding2genome gcattgatcagtaacctgtcttatcccctgcttttaacctttgttttcagctccttggggacaccagatagattcagcagagtccctcaagccatactgacacagaggaggtaaccgataattgtgaaccacaagaggaatggaccatatttactagcaa Alignment from GeneWise CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcattgatcagtaacctgtcttatcccctgcttttaacctttgttttcagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCCATACTGACACAGAGGAGgtaaccgataattgtgaaccacaagaggaatggaccatatttactagcaa #### Polr2g_ID2378_5 --> 0 - 0 Original Alignment TCCATCCCTTCA-GAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG tactaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCACGAAA-GGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from CESAR TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCACGAAAGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Spaln_aa2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG tactaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCACGAAAGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Spaln_nt2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG tactaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCACGAAAGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Pairagon TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG tactaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCACGAAAGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Exonerate_protein2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG tactaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCACGAAAGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Exonerate_coding2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG tactaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCACGAAAGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from GeneWise TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG tactaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCACGAAAGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAG-AAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGCAAGCCGTTTA-TGAAGTGGAGGGGACCTGCACTGGGaagtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGCAAGCCGTTTATGAAGTGGAGGGGACCTGCACTGGGaagtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGCAAGCCGTTTATGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGCAAGCCGTTTATGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Pairagon CACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAG-AAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaaCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGCAAGCCGTTTA-TGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Exonerate_protein2genome CACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaaCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGCAAGCCGTTTATGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Exonerate_coding2genome CACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaaCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGCAAGCCGTTTATGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ccctcgtgaagctggttaatgtcacctacttcttctccaaa------CAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGCAAGCCGTTTATGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGAT-TATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAt acacagctttactgaatatacttcattaacacagcgtttcctttcctcaggtGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATCTATTTAG-CCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCAtgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAt acacagctttactgaatatacttcattaacacagcgtttcctttcctcaggtGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATCTATTTAGCCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCAtgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATCTATTTAGCCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGAT-TATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCA---ACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATCTATTTAG-CCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGAT-TATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATCTATTTAG-CCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATCTATTTAGCCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATCTATTTAGCCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATCTATTTAGCCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGAC-ACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACCACAGGAT-TAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACCACAGGATTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACCACAGGATTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGAC-ACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACCACAGGATT-AGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGA-CACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACCACAGGATT-AGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACCACAGGATTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACCACAGGATTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACCACAGGATTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac #### Ppp1r32_ID2845_6 --> 2 - 0 Original Alignment atCTCTTGCTTAAGAAGACA-ATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagatCTCTTGCTCAAGAAAACACATTGGATCCA-GGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from CESAR atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagatCTCTTGCTCAAGAAAACACATTGGATCCAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Spaln_aa2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACACATTGGATCCAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Spaln_nt2Genome ATCTCTTGCTTAAGAAGACA-ATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACACATTGGATCC-AGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Pairagon ATCTCTTGCTTAAGAAGACA-ATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACACATTGGATCC-AGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Exonerate_protein2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACACATTGGATCCAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Exonerate_coding2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACACATTGGATCCAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from GeneWise ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACACATTGGATCCAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGT-CGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGTAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCCGAGCCC-TGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGTAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCCGAGCCCTGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGTAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCCGAGCCCTGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTC-GAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGTAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCCGAGCCC-TGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGTAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCCGAGCCCTGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGTAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCCGAGCCCTGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGTAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCCGAGCCCTGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGTAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCCGAGCCCTGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATT-GAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTCGAGAAGT-CATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAggtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTCGAGAAGTCATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAggtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTCGAGAAGTCATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTCGAGAAGTCATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATT-GAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTCGAGAAGT-CATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Exonerate_protein2genome ATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtGTTGTTCCAGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTCGAGAAGTCATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Exonerate_coding2genome ATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtGTTGTTCCAGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTCGAGAAGTCATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from GeneWise TCCCTGATCTGC------TCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttcctTCTCTGTTGTGTGTTGTTCCAGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTCGAGAAGTCATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCC-ATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagtaGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCCATCCTAA-GGCCTTGCAAGATGAGTGGgtaatgctaatcttgttccttgcttcatcgtagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagtaGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCCATCCTAAGGCCTTGCAAGATGAGTGGgtaatgctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCCATCCTAAGGCCTTGCAAGATGAGTGGgtaatgctaatcttgttccttgcttcatcgtagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCCATCCTAAGGCCTTGCAAGATGAGTGGgtaatgctaatcttgttccttgcttcatcgtagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCCATCCTAAGGCCTTGCAAGATGAGTGGgtaatgctaatcttgttccttgcttcatcgtagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCCATCCTAAGGCCTTGCAAGATGAGTGGgtaatgctaatcttgttccttgcttcatcgtagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCCATCCTAAGGCCTTGCAAGATGAGTGGgtaatgctaatcttgttccttgcttcatcgtagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCCATCCTAAGGCCTTGCAAGATGAGTGGgtaatgctaatcttgttccttgcttcatcgtagGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTC-ATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgagcctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgaagcacatttcactgtagactccccatttctgccctgttggttgcca Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaatgctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCCATTGCTCGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgaagcacatttcactgtagactccccaatccaacccttcttccccaca Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagcctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCCATTGCTCGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccatttctgccctgttggttgcca Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagcctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCCATTGCTCGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccatttctgccctgttggttgcca Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGT-CATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagcctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccatttctgccctgttggttgcca Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagcctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCCATTGCTCGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccatttctgccctgttggttgcca Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagcctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCCATTGCTCGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccatttctgccctgttggttgcca Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAA--------------------------------------------------- CCTTGCAAGATGAGTGGGTGAGCCTAATGCCTGATAGTGCTTTCCCCCAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCCATTGCTCGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGGTGAAGCACATTTCACTGTAGACTCCCCATTTCTGCCCTGTTGGTTGCCA #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACT-GTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTCGTGTTAA-CACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTCGTGTTAACACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTCGTGTTAACACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACT-GTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTCGTGTTAA-CACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Pairagon CTTCAAGACAAGGCTACTG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTCgtgttaacacagaacaaaagaaagtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTCGTGTTAACACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Exonerate_coding2genome gaaatacagcccactctataattattcgaccctacttgattcatttctagcttcaagacaaggccactcgtgttaacacagaacaaaagaaagtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTCGTGTTAACACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGC-ATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTCATTCCCGGGA-CCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTggtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from CESAR GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTCATTCCCGGGACCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTggtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTCATTCCCGGGACCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTCATTCCCGGGACCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Pairagon GGTCTACACAGTGCTAG-CATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTCATTCCCGGGA-CCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTCATTCCCGGGACCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTCATTCCCGGGACCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTCATTCCCGGGACCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATCCAG-ACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGCACAG-GCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGCACAGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGCACAGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGCACAGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Pairagon TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGCACAGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGCACAGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGCACAGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGCACAGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATC-AAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAACTGGGACTATGGACTCCCAAATTCAAGA-TTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAACTGGGACTATGGACTCCCAAATTCAAGATTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAACTGGGACTATGGACTCCCAAATTCAAGATTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGAT-CAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAACTGGGACTATGGACTCCCAAATTCAAGAT-TGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGA-TCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAACTGGGACTATGGACTCCCAAATTCAAGAT-TGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAACTGGGACTATGGACTCCCAAATTCAAGATTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAACTGGGACTATGGACTCCCAAATTCAAGATTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAACTGGGACTATGGACTCCCAAATTCAAGATTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCT-GAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCCGAGAATG-GTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCCGAGAATGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCCGAGAATGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCT-GAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCTG------CTGGGCCTATCACCAGCATTGTGTTCTCCCGAGAAT-GGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCT-CTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCTG------CTGGGCCTATCACCAGCATTGTGTTCTCCCGAGAAT-GGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCCGAGAATGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCCGAGAATGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCCGAGAATGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAG-AACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCCTAGGGCAATGCCTGTG-TGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaactgttctt Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCCTAGGGCAATGCCTGTGTGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttatgtgtgtga Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCCTAGGGCAATGCCTGTGTGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaactgttctt Alignment from Spaln_nt2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAG-AACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCCTAGGGCAATGCCTGTG-TGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaactgttctt Alignment from Pairagon AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAG-AACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCCTAGGGCAATGCCTGTG-TGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaactgttctt Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCCTAGGGCAATGCCTGTGTGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaactgttctt Alignment from Exonerate_coding2genome atggagacccataaattgagacctttcgtgaatgttctttcttcttacagaggatttattatctgtctttggagttctacatgggccggacactacaaaacaccatggtaaatcttgccctagggcaatgcctgtgtgaggctacttaccaggtacgggataaagcggcgtctatgtaagcatttgggttttaactgttctt Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCCTAGGGCAATGCCTGTGTGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaactgttctt #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAAC-ATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagtcAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACCATCT-CCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagtcAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACCATCTCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACCATCTCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACCATCTCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAA-CATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACCATCTC-CGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACCATCTCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACCATCTCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACCATCTCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCC-CGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCCGTCACTTGC-GATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCCGTCACTTGCGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCCGTCACTTGCGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCC-GCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCCGTCACTTGC-GATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTG-CCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCCGTCACTTGC-GATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCCGTCACTTGCGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCCGTCACTTGCGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCCGTCACTTGCGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc #### Pygm_ID1687_11 --> 0 - 2 Original Alignment CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCA-CACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACATGTCACCACCTGT-CATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCatgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from CESAR CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACATGTCACCACCTGTCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCatgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Spaln_aa2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACATGTCACCACCTGTCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Spaln_nt2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACATGTCACCACCTGTCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Pairagon CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCA-CACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACATGTCACCACCTGT-CATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Exonerate_protein2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACATGTCACCACCTGTCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Exonerate_coding2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACATGTCACCACCTGTCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from GeneWise CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACATGTCACCACCTGTCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag #### Pygm_ID1691_15 --> 2 - 0 Original Alignment gcATCAAAAGGGAGCCC-AATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtggtgaccttcattttcccacaggcATAAAAAGGGAGCTCCAATCGGTTCA-GGTGCCAAGGACTATCATGATTGGAGGGAAGgtatgtagagattggtgcatgagagtaagatgttcaaaggaagtgtacac Alignment from CESAR gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtggtgaccttcattttcccacaggcATAAAAAGGGAGCTCCAATCGGTTCAGGTGCCAAGGACTATCATGATTGGAGGGAAGgtatgtagagattggtgcatgagagtaagatgttcaaaggaagtgtacac Alignment from Spaln_aa2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtggtgaccttcattttcccacagGCATAAAAAGGGAGCTCCAATCGGTTCAGGTGCCAAGGACTATCATGATTGGAGGGAAGgtatgtagagattggtgcatgagagtaagatgttcaaaggaagtgtacac Alignment from Spaln_nt2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtggtgaccttcattttcccacagGCATAAAAAGGGAGCTCCAATCGGTTCAGGTGCCAAGGACTATCATGATTGGAGGGAAGgtatgtagagattggtgcatgagagtaagatgttcaaaggaagtgtacac Alignment from Pairagon GCATCAAAAGGGAGC-CCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtggtgaccttcattttcccacagGCATAAAAAGGGAGCTCCAATCGGTTCA-GGTGCCAAGGACTATCATGATTGGAGGGAAGgtatgtagagattggtgcatgagagtaagatgttcaaaggaagtgtacac Alignment from Exonerate_protein2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtggtgaccttcattttcccacagGCATAAAAAGGGAGCTCCAATCGGTTCAGGTGCCAAGGACTATCATGATTGGAGGGAAGgtatgtagagattggtgcatgagagtaagatgttcaaaggaagtgtacac Alignment from Exonerate_coding2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtggtgaccttcattttcccacagGCATAAAAAGGGAGCTCCAATCGGTTCAGGTGCCAAGGACTATCATGATTGGAGGGAAGgtatgtagagattggtgcatgagagtaagatgttcaaaggaagtgtacac Alignment from GeneWise GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtggtgaccttcattttcccacagGCATAAAAAGGGAGCTCCAATCGGTTCAGGTGCCAAGGACTATCATGATTGGAGGGAAGgtatgtagagattggtgcatgagagtaagatgttcaaaggaagtgtacac #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCG-GAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCACGAAAAGCAGT-GAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCACGAAAAGCAGTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCACGAAAAGCAGTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCACGAAAAGCAGTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCG-GAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCACGAAAAGCAG-TGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCACGAAAAGCAGTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCACGAAAAGCAGTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCACGAAAAGCAGTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACC-ATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctcgtagtgatctgtcaccctcttaagcccctcctgtcccacttgacagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTCATTG-GCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTGCCTAGTATTGAGTGTAACAACACCaagtaagatcaggctcaggagggcagcggaggagggatatcagtcttggtcc Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctcgtagtgatctgtcaccctcttaagcccctcctgtcccacttgacagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTCATTGGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTGCCTAGTATTGAGTGTAACAACACCaagtaagatcaggctcaggagggcagcggaggagggatatcagtcttggtcc Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctcgtagtgatctgtcaccctcttaagcccctcctgtcccacttgacagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTCATTGGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTGCCTAGTATTGAGTGTAACAACACCAAgtaagatcaggctcaggagggcagcggaggagggatatcagtcttggtcc Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctcgtagtgatctgtcaccctcttaagcccctcctgtcccacttgacagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTCATTGGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTGCCTAGTATTGAGTGTAACAACACCAAgtaagatcaggctcaggagggcagcggaggagggatatcagtcttggtcc Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCAC-CATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctcgtagtgatctgtcaccctcttaagcccctcctgtcccacttgacagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTCATTG-GCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTGCCTAGTATTGAGTGTAACAACACCAAgtaagatcaggctcaggagggcagcggaggagggatatcagtcttggtcc Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctcgtagtgatctgtcaccctcttaagcccctcctgtcccacttgacagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTCATTGGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTGCCTAGTATTGAGTGTAACAACACCAAgtaagatcaggctcaggagggcagcggaggagggatatcagtcttggtcc Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctcgtagtgatctgtcaccctcttaagcccctcctgtcccacttgacagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTCATTGGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTGCCTAGTATTGAGTGTAACAACACCAAgtaagatcaggctcaggagggcagcggaggagggatatcagtcttggtcc Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctcgtagtgatctgtcaccctcttaagcccctcctgtcccacttgacagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTCATTGGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTGCCTAGTATTGAGTGTAACAACACCAAgtaagatcaggctcaggagggcagcggaggagggatatcagtcttggtcc #### Rasgrp2_ID1704_3 --> 1 - 2 Original Alignment cTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCag agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagcTATCAGCAATCCCGGAAGGATAACTCTAATCTCCC-ACAGATGAAAACATGTCACTTGGTCaggtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from CESAR cTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCag agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagcTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCACAGATGAAAACATGTCACTTGGTCaggtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Spaln_aa2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Spaln_nt2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Pairagon CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Exonerate_protein2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Exonerate_coding2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from GeneWise CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAAC-CCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCCAGTCC-GGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCCAGTCCGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCCAGTCCGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCCAGTCCGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCCAGTCCGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCCAGTCCGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCCAGTCCGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCCAGTCCGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg #### Rasgrp2_ID1710_9 --> 0 - 0 Original Alignment GTGTCCCTGGATCAGTAT-CAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggcggggtgctcttcctccctaatatacacagGTGTCCCTGGAACAGTATCCAGACAG-GGATGAGCTGTACCAACTCTCATTGCAGCGGGAGCCATGCTCCAAGTCATGGgtgagatagcccatccatctccccattgtagcactctatttttttgggct Alignment from CESAR GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggcggggtgctcttcctccctaatatacacagGTGTCCCTGGAACAGTATCCAGACAGGGATGAGCTGTACCAACTCTCATTGCAGCGGGAGCCATGCTCCAAGTCATGGgtgagatagcccatccatctccccattgtagcactctatttttttgggct Alignment from Spaln_aa2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggcggggtgctcttcctccctaatatacacagGTGTCCCTGGAACAGTATCCAGACAGGGATGAGCTGTACCAACTCTCATTGCAGCGGGAGCCATGCTCCAAGTCATGGgtgagatagcccatccatctccccattgtagcactctatttttttgggct Alignment from Spaln_nt2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggcggggtgctcttcctccctaatatacacagGTGTCCCTGGAACAGTATCCAGACAGGGATGAGCTGTACCAACTCTCATTGCAGCGGGAGCCATGCTCCAAGTCATGGgtgagatagcccatccatctccccattgtagcactctatttttttgggct Alignment from Pairagon GTGTCCCTGGATCAGTAT-CAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggcggggtgctcttcctccctaatatacacagGTGTCCCTGGAACAGTATCCAGACAG-GGATGAGCTGTACCAACTCTCATTGCAGCGGGAGCCATGCTCCAAGTCATGGgtgagatagcccatccatctccccattgtagcactctatttttttgggct Alignment from Exonerate_protein2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggcggggtgctcttcctccctaatatacacagGTGTCCCTGGAACAGTATCCAGACAGGGATGAGCTGTACCAACTCTCATTGCAGCGGGAGCCATGCTCCAAGTCATGGgtgagatagcccatccatctccccattgtagcactctatttttttgggct Alignment from Exonerate_coding2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggcggggtgctcttcctccctaatatacacagGTGTCCCTGGAACAGTATCCAGACAGGGATGAGCTGTACCAACTCTCATTGCAGCGGGAGCCATGCTCCAAGTCATGGgtgagatagcccatccatctccccattgtagcactctatttttttgggct Alignment from GeneWise GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggcggggtgctcttcctccctaatatacacagGTGTCCCTGGAACAGTATCCAGACAGGGATGAGCTGTACCAACTCTCATTGCAGCGGGAGCCATGCTCCAAGTCATGGgtgagatagcccatccatctccccattgtagcactctatttttttgggct #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAG-GGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGCGGAC-GGTACGTCTCCTGaggttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGCGGACGGTACGTCTCCTGaggttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGCGGACGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGC---AAAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGCGGACGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAG-GGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGC---AAAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGCGGACG-GTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGCGGACGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Exonerate_coding2genome CGTTTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgCAGTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGCGGACGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCAAAG---GATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGCGGACGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGG-GGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tggctcatcagtgggcatatttcccttgactggtatttcccccatttcagGGCAGTCTCCGACGGCGAAA-GGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTCGGAGGTGGTAGCACAGAGCATGAC------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtatggttcaacctatttttcccaatcttgcaggtgggaggtgaacctag Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tggctcatcagtgggcatatttcccttgactggtatttcccccatttcagGGCAGTCTCCGACGGCGAAAGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTCGGAGGTGGTAGCACAGAGCATGAC------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtatggttcaacctatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tggctcatcagtgggcatatttcccttgactggtatttcccccatttcagGGCAGTCTCCGACGGCGAAAGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTCGGAGGTGGTAGCACAGAGCATGAC------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtatggttcaacctatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tggctcatcagtgggcatatttcccttgactggtatttcccccatttcagGGCAGTCTCCGACGGCGAAAGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTCGGAGGTGGTAGCACAGAGCATGACT------TAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtatggttcaacctatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tggctcatcagtgggcatatttcccttgactggtatttcccccatttcagGGCAGTCTCCGACGGCGAAAGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTCGGAGGTGGTAGCACAGAGCATGACT------TAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtatggttcaacctatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tggctcatcagtgggcatatttcccttgactggtatttcccccatttcagGGCAGTCTCCGACGGCGAAAGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTCGGAGGTGGTAGCACAGAGCATGAC------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtatggttcaacctatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Exonerate_coding2genome tggctcatcagtgggcatatttcccttgactggtatttcccccatttcagggcagtctccgacggcgaaaggcatgggtgtgggcacttgtgcttctgtcagccctcggaggtggtagcacagagcatgacttaagcagctttcaagttaaagataactttgacaaagctcatgtatggttcaacctatttttcccaatcttgcaggtgggaggtgaacctag Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tggctcatcagtgggcatatttcccttgactggtatttcccccatttcagGGCAGTCTCCGACGGCGAAAGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTCGGAGGTGGTAGCACAGAGCATGAC------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtatggttcaacctatttttcccaatcttgcaggtgggaggtgaacctag #### Rce1_ID576_6 --> 2 - 1 Original Alignment CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTG-CGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTTTTTTTTGGGGTTggtaagacttcttgctttcatttttcaacagccCATTTTCAGCACATTATAGAGCAGTTACCGCTTCC-CCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from CESAR CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTTTTTTTTGGGGTTggtaagccttcttgctttcatttttcaacagccCATTTTCAGCACATTATAGAGCAGTTACCGCTTCCCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Spaln_aa2Genome CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGGTTGGTAAGACTTCTTGCTTTCATTTTTCAACAGCCCATTTTCAGCACATTATAGAGCAGTTACCGCTTCCCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Spaln_nt2Genome CTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTTTTTTGG----GgttggtaagacttcttgctttcatttttcaacagCCCATTTTCAGCACATTATAGAGCAGTTACCGCTTCCCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Pairagon CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGGTTGgtaagacttcttgctttcatttttcaacagCCCATTTTCAGCACATTATAGAGCAGTTACCGCTTCCCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Exonerate_protein2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGGTTGgtaagacttcttgctttcatttttcaacagCCCATTTTCAGCACATTATAGAGCAGTTACCGCTTCCCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Exonerate_coding2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGGTTGgtaagacttcttgctttcatttttcaacagCCCATTTTCAGCACATTATAGAGCAGTTACCGCTTCCCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from GeneWise CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGGTTGGTAAGACTTCTTGCTTTCATTTTTCAACAGCCCATTTTCAGCACATTATAGAGCAGTTACCGCTTCCCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCT-GTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagccCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCCGTGTTCACAT-CCCACTTTTTTTTGGGGTTggtaagtctttccattgcacatcttctgcagccCATTTTCAGCACATTATA Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagccCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCCGTGTTCACATCCCACTTTTTTTTGGGGTTggtaagccttcttgctttcatttttcaacagccCATTTTCAGCACATTATA Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCCGTGTTCACATCCCACTTTTTTTTGGGGTTGGTAAGTCTTTCCATTGCACATCTTCTGCAGCCCATTTTCAGCACATTATA Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCT-GTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCCGTGTTCACAT-CCCACTTTTTTTTGG----GgttggtaagtctttccattgcacatcttctgcagCCCATTTTCAGCACATTATA Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTG-CTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCCGTGTTCACAT-CCCACTTTTTTTTGGGGTTGgtaagtctttccattgcacatcttctgcagCCCATTTTCAGCACATTATA Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCCGTGTTCACATCCCACTTTTTTTTGGGGTTGgtaagtctttccattgcacatcttctgcagCCCATTTTCAGCACATTATA Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCCGTGTTCACATCCCACTTTTTTTTGGGGTTGgtaagtctttccattgcacatcttctgcagCCCATTTTCAGCACATTATA Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCCGTGTTCACATCCCACTTTTTTTTGGGGTTGGTAAGTCTTTCCATTGCACATCTTCTGCAGCCCATTTTCAGCACATTATA #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGG-GAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaaggGACCACCCCTCTGTAATAAAGCGGCATTTTACCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGCGAAC-CACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaaggGACCACCCCTCTGTAATAAAGCGGCATTTTACCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGCGAACCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGCGAACCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGCGAACCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGCGAACCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGCGAACCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGCGAACCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGCGAACCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc #### Rcor2_ID2093_4 --> 0 - 0 Original Alignment GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCAT-GGCAAGTGCTTCCAGCGGATCCAGCAGATG taacttagcattggcatgcgcagtcctatttgtcctccgcttcattccagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTTGAACAGGCCTTTGGGTTCCATCGGCAAGT-CTTTCAGCGTATCCAGCAAATGgtaagactgtaattagtcccccttgaatacttcccagccctttatgcaga Alignment from CESAR GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taacttagcattggcatgcgcagtcctatttgtcctccgcttcattccagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTTGAACAGGCCTTTGGGTTCCATCGGCAAGTCTTTCAGCGTATCCAGCAAATGgtaagactgtaattagtcccccttgaatacttcccagccctttatgcaga Alignment from Spaln_aa2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taacttagcattggcatgcgcagtcctatttgtcctccgcttcattccagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTTGAACAGGCCTTTGGGTTCCATCGGCAAGTCTTTCAGCGTATCCAGCAAATGgtaagactgtaattagtcccccttgaatacttcccagccctttatgcaga Alignment from Spaln_nt2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taacttagcattggcatgcgcagtcctatttgtcctccgcttcattccagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTTGAACAGGCCTTTGGGTTCCATCGGCAAGTCTTTCAGCGTATCCAGCAAATGgtaagactgtaattagtcccccttgaatacttcccagccctttatgcaga Alignment from Pairagon GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCAT-GGCAAGTGCTTCCAGCGGATCCAGCAGATG taacttagcattggcatgcgcagtcctatttgtcctccgcttcattccagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTTGAACAGGCCTTTGGGTTCCATCGGCAAGT-CTTTCAGCGTATCCAGCAAATGgtaagactgtaattagtcccccttgaatacttcccagccctttatgcaga Alignment from Exonerate_protein2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taacttagcattggcatgcgcagtcctatttgtcctccgcttcattccagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTTGAACAGGCCTTTGGGTTCCATCGGCAAGTCTTTCAGCGTATCCAGCAAATGgtaagactgtaattagtcccccttgaatacttcccagccctttatgcaga Alignment from Exonerate_coding2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taacttagcattggcatgcgcagtcctatttgtcctccgcttcattccagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTTGAACAGGCCTTTGGGTTCCATCGGCAAGTCTTTCAGCGTATCCAGCAAATGgtaagactgtaattagtcccccttgaatacttcccagccctttatgcaga Alignment from GeneWise GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taacttagcattggcatgcgcagtcctatttgtcctccgcttcattccagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTTGAACAGGCCTTTGGGTTCCATCGGCAAGTCTTTCAGCGTATCCAGCAAATGgtaagactgtaattagtcccccttgaatacttcccagccctttatgcaga #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGC-CTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCCTGGTGA-ATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATaggtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCCTGGTGAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATaggtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCCTGGTGAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCC-TGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCCTGGTGAA-TATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAG-CCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCCTGGTGAA-TATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCCTGGTGAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCCTGGTGAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAG-GGGGAACCGGATACTGGAGACCCCAAGCGAGAG tgggtaggtatgatcctccctcattttcgttgtccgttgcccccttttagtGATGAAGTAGAAGAGGGACAGGGAGCTGTGAGTGAGCGGGGAGC-AGATACTGGAGACCCCAAGCAGAAGgtaagttccatgcgatattgtgtcctatgcagtactaaccttcttgctgg Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tgggtaggtatgatcctccctcattttcgttgtccgttgcccccttttagtGATGAAGTAGAAGAGGGACAGGGAGCTGTGAGTGAGCGGGGAGCAGATACTGGAGACCCCAAGCAGAAGgtaagttccatgcgatattgtgtcctatgcagtactaaccttcttgctgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tgggtaggtatgatcctccctcattttcgttgtccgttgcccccttttagTGATGAAGTAGAAGAGGGACAGGGAGCTGTGAGTGAGCGGGGAGCAGATACTGGAGACCCCAAGCAGAAGgtaagttccatgcgatattgtgtcctatgcagtactaaccttcttgctgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tgggtaggtatgatcctccctcattttcgttgtccgttgcccccttttagTGATGAAGTAGAAGAGGGACAGGGAGCTGTGAGTGAGCGGGGAGCAGATACTGGAGACCCCAAGCAGAAGgtaagttccatgcgatattgtgtcctatgcagtactaaccttcttgctgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tgggtaggtatgatcctccctcattttcgttgtccgttgcccccttttagTGATGAAGTAGAAGAGGGACAGGGAGCTGTGAGTGAGCGGGGAGCAGATACTGGAGACCCCAAGCAGAAGgtaagttccatgcgatattgtgtcctatgcagtactaaccttcttgctgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tgggtaggtatgatcctccctcattttcgttgtccgttgcccccttttagTGATGAAGTAGAAGAGGGACAGGGAGCTGTGAGTGAGCGGGGAGCAGATACTGGAGACCCCAAGCAGAAGgtaagttccatgcgatattgtgtcctatgcagtactaaccttcttgctgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tgggtaggtatgatcctccctcattttcgttgtccgttgcccccttttagTGATGAAGTAGAAGAGGGACAGGGAGCTGTGAGTGAGCGGGGAGCAGATACTGGAGACCCCAAGCAGAAGgtaagttccatgcgatattgtgtcctatgcagtactaaccttcttgctgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tgggtaggtatgatcctccctcattttcgttgtccgttgcccccttttagTGATGAAGTAGAAGAGGGACAGGGAGCTGTGAGTGAGCGGGGAGCAGATACTGGAGACCCCAAGCAGAAGgtaagttccatgcgatattgtgtcctatgcagtactaaccttcttgctgg #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCC-ACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCCACGG-AGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgtccttttt Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCCACGGAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgttggcttc Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCCACGGAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgtccttttt Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCCACGGAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgtccttttt Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCCACGGAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgtccttttt Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCCACGGAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgtccttttt Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCCACGGAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgtccttttt Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCCACGGAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgtccttttt #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAGGCAGCCACC-CACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggagacttttccctaggctgtgatattgatattttcataggGCGATTCATCAGGCAGCCACCCCACAAAGAGC-AGAGGCTATCTCCCATCTGGGCATGggtaaggaaccctgtcttttatataaaacgtgttggggttacctggttaag Alignment from CESAR aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggagacttttccctaggctgtgatattgatattttcataggGCGATTCATCAGGCAGCCACCCCACAAAGAGCAGAGGCTATCTCCCATCTGGGCATGggtaaggaaccctgtcttttatataaaacgtgttggggttacctggttaag Alignment from Spaln_aa2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacttttccctaggctgtgatattgatattttcatagGGCGATTCATCAGGCAGCCACCCCACAAAGAGCAGAGGCTATCTCCCATCTGGGCATGGgtaaggaaccctgtcttttatataaaacgtgttggggttacctggttaag Alignment from Spaln_nt2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacttttccctaggctgtgatattgatattttcatagGGCGATTCATCAGGCAGCCACCCCACAAAGAGCAGAGGCTATCTCCCATCTGGGCATGGgtaaggaaccctgtcttttatataaaacgtgttggggttacctggttaag Alignment from Pairagon AGCCATTCATCAGGCAGCCA-CCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacttttccctaggctgtgatattgatattttcatagGGCGATTCATCAGGCAGCCACCCCACAAAGAGC-AGAGGCTATCTCCCATCTGGGCATGGgtaaggaaccctgtcttttatataaaacgtgttggggttacctggttaag Alignment from Exonerate_protein2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacttttccctaggctgtgatattgatattttcatagGGCGATTCATCAGGCAGCCACCCCACAAAGAGCAGAGGCTATCTCCCATCTGGGCATGGgtaaggaaccctgtcttttatataaaacgtgttggggttacctggttaag Alignment from Exonerate_coding2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacttttccctaggctgtgatattgatattttcatagGGCGATTCATCAGGCAGCCACCCCACAAAGAGCAGAGGCTATCTCCCATCTGGGCATGGgtaaggaaccctgtcttttatataaaacgtgttggggttacctggttaag Alignment from GeneWise AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacttttccctaggctgtgatattgatattttcatagGGCGATTCATCAGGCAGCCACCCCACAAAGAGCAGAGGCTATCTCCCATCTGGGCATGGgtaaggaaccctgtcttttatataaaacgtgttggggttacctggttaag #### Rin1_ID811_6 --> 2 - 1 Original Alignment agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTA-CTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagagTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCCTGACTCAAG-TCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCagtgagacacttcaaaagtatgatttcacaccaactcccctggagtttttc Alignment from CESAR agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagagTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCCTGACTCAAGTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCagtgagacacttcaaaagtatgatttcacaccaactcccctggatctcctt Alignment from Spaln_aa2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCCTGACTCAAGTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggagtttttc Alignment from Spaln_nt2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGG---GCCCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCCTGACTCAAGTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggagtttttc Alignment from Pairagon AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGT-------------------------GCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGG---GCCCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCCTGACTCAAGTCAGGCAGGACCT-------------------------GAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggagtttttc Alignment from Exonerate_protein2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCCTGACTCAAGTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggagtttttc Alignment from Exonerate_coding2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCCTGACTCAAGTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggagtttttc Alignment from GeneWise AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCCTGACTCAAGTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggagtttttc #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCA-GGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagatccatgggcttgacggctttcctattcctctactaggaTTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCACGAGTTTGCAG-ATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtatgtatgaagagattgtacaagtgagagcattttgcatgagtgtgtcc Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagatccatgggcttgacggctttcctattcctctactaggaTTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCACGAGTTTGCAGATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtatgtatgaagagattgtacaagtgagagcattttgcatgagtgtgtcc Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagatccatgggcttgacggctttcctattcctctactagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCACGAGTTTGCAGATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtatgtatgaagagattgtacaagtgagagcattttgcatgagtgtgtcc Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGA tgtaggtcttgagatccatgggcttgacggctttcctattcctctactagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCACGAGTTTGCAGATTTGTGATGGTGACAGAGGACGATGCCCAAGAGCCATTAGAGAGA---GACTT-----GGTATG-TATGAAGAGATTGTACAAG-----TGAGAGCATTTTGCATGAgt Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCA-GGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagatccatgggcttgacggctttcctattcctctactagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCACGAGTTTGC-AGATTTGTGATGGTGACAGA------------------------------------------------------------GGACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtatgtatgaagagattgtacaagtgagagcattttgcatgagtgtgtcc Alignment from Exonerate_protein2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAG tgtaggtcttgagatccatgggcttgacggctttcctattcctctactagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCACGAGTTTGCAGATTTGTGATGGTGACAGAGGACGATGCCCAAgagccattagagagagacttggtatgtatgaagagattgtacaagtgagagcattttgcatgagtgtgtcc Alignment from Exonerate_coding2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAG tgtaggtcttgagatccatgggcttgacggctttcctattcctctactagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCACGAGTTTGCAGATTTGTGATGGTGACAGAGGACGATGCCCAAgagccattagagagagacttggtatgtatgaagagattgtacaagtgagagcattttgcatgagtgtgtcc Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagatccatgggcttgacggctttcctattcctctactagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCACGAGTTTGCAGATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtatgtatgaagagattgtacaagtgagagcattttgcatgagtgtgtcc #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTC-ACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCCACCT-GTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCCACCTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCCACCTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Spaln_nt2Genome CCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTCGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ---GTGTC-CAATGTACAAACC---CGCGTC-CGGGCGC-----GCGCAG------GACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCCACCTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCCACCTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Exonerate_protein2genome attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcaggaccgccttatcggggccactggaagcttcagccatttccacctgtgggatctggaaacagtcccaggtccagatgccatagtgcatagggccctaggatggcccaccctagcagcagcagtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Exonerate_coding2genome attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcaggaccgccttatcggggccactggaagcttcagccatttccacctgtgggatctggaaacagtcccaggtccagatgccatagtgcatagggccctaggatggcccaccctagcagcagcagtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCC------CAGGTCCCTGAGGAC attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCCACCTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAGTGGGTAGGCTGAGGAAATTTACCTCTGATggctgacaattcctctatct #### Rpp30_ID7088_8 --> 0 - 0 Original Alignment AATGTAATTCTG-TCCAGTGCTGCAGAAAGG tagtatgcagctgatcattgatttctcctaaatatgttatcactttctagAATGTAATTCTGCTCAA-TACTGCAGCGAGAgtgagtatagggcaactctactggctgtggttaggacacttaacataggc Alignment from CESAR AATGTAATTCTGTCCAGTGCTGCAGAAAGG tagtatgcagctgatcattgatttctcctaaatatgttatcactttctagAATGTAATTCTGCTCAATACTGCAGCGAGAgtgagtatagggcaactctactggctgtggttaggacacttaacataggc Alignment from Spaln_aa2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tagtatgcagctgatcattgatttctcctaaatatgttatcactttctagAATGTAATTCTGCTCAATACTGCAGCGAGAgtgagtatagggcaactctactggctgtggttaggacacttaacataggc Alignment from Spaln_nt2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tagtatgcagctgatcattgatttctcctaaatatgttatcactttctagAATGTAATTCTGCTCAATACTGCAGCGAGAgtgagtatagggcaactctactggctgtggttaggacacttaacataggc Alignment from Pairagon AATGTAATTCTGTCCAGTGCTGCAGAAAGG tagtatgcagctgatcattgatttctcctaaatatgttatcactttctagAATGTAATTCTGCTCAATACTGCAGCGAGAgtgagtatagggcaactctactggctgtggttaggacacttaacataggc Alignment from Exonerate_protein2genome tagtatgcagctgatcattgatttctcctaaatatgttatcactttctagaatgtaattctgctcaatactgcagcgagagtgagtatagggcaactctactggctgtggttaggacacttaacataggc Alignment from Exonerate_coding2genome tagtatgcagctgatcattgatttctcctaaatatgttatcactttctagaatgtaattctgctcaatactgcagcgagagtgagtatagggcaactctactggctgtggttaggacacttaacataggc Alignment from GeneWise tagtatgcagctgatcattgatttctcctaaatatgttatcactttctagaatgtaattctgctcaatactgcagcgagagtgagtatagggcaactctactggctgtggttaggacacttaacataggc #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCA-CCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCCTT-CGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCCTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCCTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCCTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCCTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCCTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCCTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCCTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGAT-GTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATCGTGAGCCAGT-TGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATCGTGAGCCAGTTGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATCGTGAGCCAGTTGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Spaln_nt2Genome CAATCAGAAGAGGAT-GTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATCGTGAGCCAG-TTGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Pairagon CAATCAGAAGAGGAT-GTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATCGTGAGCCAG-TTGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATCGTGAGCCAGTTGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATCGTGAGCCAGTTGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATCGTGAGCCAGTTGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAAC-CCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCCACTC-GCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from CESAR TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCCACTCGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Spaln_aa2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCCACTCGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCCACTCGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Pairagon TTTCTGAAGCGGAA-CCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCCACTC-GCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCCACTCGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCCACTCGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCCACTCGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg #### Rps6kb2_ID372_10 --> 0 - 0 Original Alignment CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCC-CGGGACCTTGCCAAAAAG ggggagactatacggagctctttcatgcccctccatttctctcttcacagCCACCTTTCACTGCTGAGAACCGGAAGAAAGCTACTGATAATATCATTAAAAGTAAGCTA---CTCCCCCCGTATCTTATGCCTGATGCTCCGGG-CCTTGCCAAAAAGgtggggttcactctcattcaaaaaattacaaactcctcctttagaaatgc Alignment from CESAR CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggggagactatacggagctctttcatgcccctccatttctctcttcacagCCACCTTTCACTGCTGAGAACCGGAAGAAAGCTACTGATAATATCATTAAAAGTAAGCTA---CTCCCCCCGTATCTTATGCCTGATGCTCCGGGCCTTGCCAAAAAGgtggggttcactctcattcaaaaaattacaaactcctcctttagaaatgc Alignment from Spaln_aa2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggggagactatacggagctctttcatgcccctccatttctctcttcacagCCACCTTTCACTGCTGAGAACCGGAAGAAAGCTACTGATAATATCATTAAAAGTAAGCTA---CTCCCCCCGTATCTTATGCCTGATGCTCCGGGCCTTGCCAAAAAGgtggggttcactctcattcaaaaaattacaaactcctcctttagaaatgc Alignment from Spaln_nt2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggggagactatacggagctctttcatgcccctccatttctctcttcacagCCACCTTTCACTGCTGAGAACCGGAAGAAAGCTACTGATAATATCATTAAAAGTAAGC---TACTCCCCCCGTATCTTATGCCTGATGCTCCGGGCCTTGCCAAAAAGgtggggttcactctcattcaaaaaattacaaactcctcctttagaaatgc Alignment from Pairagon CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggggagactatacggagctctttcatgcccctccatttctctcttcacagCCACCTTTCACTGCTGAGAACCGGAAGAAAGCTACTGATAATATCATTAAAAGTAAGC---TACTCCCCCCGTATCTTATGCCTGATGCTCCGGGCCTTGCCAAAAAGgtggggttcactctcattcaaaaaattacaaactcctcctttagaaatgc Alignment from Exonerate_protein2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggggagactatacggagctctttcatgcccctccatttctctcttcacagCCACCTTTCACTGCTGAGAACCGGAAGAAAGCTACTGATAATATCATTAAAAGTAAGCTA---CTCCCCCCGTATCTTATGCCTGATGCTCCGGGCCTTGCCAAAAAGgtggggttcactctcattcaaaaaattacaaactcctcctttagaaatgc Alignment from Exonerate_coding2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggggagactatacggagctctttcatgcccctccatttctctcttcacagCCACCTTTCACTGCTGAGAACCGGAAGAAAGCTACTGATAATATCATTAAAAGTAAGCTA---CTCCCCCCGTATCTTATGCCTGATGCTCCGGGCCTTGCCAAAAAGgtggggttcactctcattcaaaaaattacaaactcctcctttagaaatgc Alignment from GeneWise CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggggagactatacggagctctttcatgcccctccatttctctcttcacagCCACCTTTCACTGCTGAGAACCGGAAGAAAGCTACTGATAATATCATTAAAAGTAAGCTA---CTCCCCCCGTATCTTATGCCTGATGCTCCGGGCCTTGCCAAAAAGgtggggttcactctcattcaaaaaattacaaactcctcctttagaaatgc #### Rps6kb2_ID374_8 --> 2 - 2 Original Alignment gcCACATCAAACTGACAGACTTTGGACTT-TGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACat ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacaggtCACATCAAACTGACATACTTAGGACTTCTGCA-GGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACatgtaagttttgggaggggtaccacaaagggactacaactatgtttttcttt Alignment from CESAR gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACat ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacaggtCACATCAAACTGACATACTTAGGACTTCTGCAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACatgtaagttttgggaggggtaccacaaagggactacaactatgtgggcttgg Alignment from Spaln_aa2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTCTGCAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtttttcttt Alignment from Spaln_nt2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTCTGCAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtttttcttt Alignment from Pairagon GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTCTGCAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtttttcttt Alignment from Exonerate_protein2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTCTGCAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtttttcttt Alignment from Exonerate_coding2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTCTGCAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtttttcttt Alignment from GeneWise GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTCTGCAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtttttcttt #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAG-CTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtgtataagatcttgtctctcactgggctccctctctttgcaggACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATAGGGCCCCACTGCTTCGAGCTTACTTA-TGTCCTGGTCAAAGGGGGTTATGGAAAGgtgggtcatcttactcccagtgacatcagctcaagtgcaagtgcaattaa Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtgtataagatcttgtctctcactgggctccctctctttgcaggACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATAGGGCCCCACTGCTTCGAGCTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgggtcatcttactcccagtgacatcagctcaagtgcaagtgcaattaa Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtgtataagatcttgtctctcactgggctccctctctttgcagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATAGGGCCCCACTGCTTCGAGCTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgggtcatcttactcccagtgacatcagctcaagtgcaagtgcaattaa Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtgtataagatcttgtctctcactgggctccctctctttgcagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATAGGGCCCCACTGCTTCGAGCTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgggtcatcttactcccagtgacatcagctcaagtgcaagtgcaattaa Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGC-TACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtgtataagatcttgtctctcactgggctccctctctttgcagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATAGGGCCCCACTGCTTCGAGCTTACTTA-TGTCCTGGTCAAAGGGGGTTATGGAAAGgtgggtcatcttactcccagtgacatcagctcaagtgcaagtgcaattaa Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtgtataagatcttgtctctcactgggctccctctctttgcagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATAGGGCCCCACTGCTTCGAGCTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgggtcatcttactcccagtgacatcagctcaagtgcaagtgcaattaa Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtgtataagatcttgtctctcactgggctccctctctttgcagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATAGGGCCCCACTGCTTCGAGCTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgggtcatcttactcccagtgacatcagctcaagtgcaagtgcaattaa Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtgtataagatcttgtctctcactgggctccctctctttgcagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTGATCCTGAACGTATAGGGCCCCACTGCTTCGAGCTTACTTATGTCCTGGTCAAAGGGGGTTATGGAAAGgtgggtcatcttactcccagtgacatcagctcaagtgcaagtgcaattaa #### Rrp12_ID8296_27 --> 1 - 2 Original Alignment aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCT-GTCCAGAGCAAAGGTGACag tctgatgagggattcctggcaacatcaattcggtctaactccctacacaggTATGAGTTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACATAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTCGTGC-AAGCAAAGGTGACaggtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from CESAR aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag tctgatgagggattcctggcaacatcaattcggtctaactccctacacaggTATGAGTTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACATAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTCGTGCAAGCAAAGGTGACaggtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Spaln_aa2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACATAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTCGTGCAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Spaln_nt2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACATAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTCGTGCAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Pairagon ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACATAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTCGTGCAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Exonerate_protein2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACATAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTCGTGCAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Exonerate_coding2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACATAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTCGTGCAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from GeneWise ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACATAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTCGTGCAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc #### Rrp12_ID8297_26 --> 0 - 2 Original Alignment ATGGAAGCCATTGGGAAGTTGTCAGAT-GACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATCGACATGCGAC-GCACTTCCGGATGAAGCTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTgggtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from CESAR ATGGAAGCCATTGGGAAGTTGTCAGAT-GACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATCGACATGCGAC-GCACTTCCGGATGAAGCTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTgggtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Spaln_aa2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATCGACATGCGACGCACTTCCGGATGAAGCTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Spaln_nt2Genome ATGGAAGCCATTGGGAAGTTGTCAGAT-GACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATCGACATGCGAC-GCACTTCCGGATGAAGCTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Pairagon ATGGAAGCCATTGGGAAGTTGTCAGAT-GACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATCGACATGCGAC-GCACTTCCGGATGAAGCTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Exonerate_protein2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATCGACATGCGACGCACTTCCGGATGAAGCTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATCGACATGCGACGCACTTCCGGATGAAGCTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTG-AAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGCAAAACAC-GTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGCAAAACACGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGCAAAACACGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGCAAAACACGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGCAAAACACGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGCAAAACACGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGCAAAACACGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGG-CGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGA-GAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Pairagon cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacaggctttccggcaactgtcccaccgcttccatggaaagggctcaggcaagatgaaaactgagcggctggatgagaagctggatgaggaggcagtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from GeneWise cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacaggctttccggcaactgtcccaccgcttccatggaaagggctcaggcaagatgaaaactgagcggctggatgagaagctggatgaggaggcagtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAA-CTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagaaGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACCTAC-GCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagaaGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACCTACGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACCTACGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACCTACGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACCTACGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACCTACGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACCTACGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACCTACGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAG-GAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGCGAGG-GACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAggtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGCGAGGGACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAggtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGCGAGGGACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAG-----CGAGG-GACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGT------CATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCC----TGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAGCGAGG----------GACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGT------CATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGCGAGGGACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGCGAGGGACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAG------CGAGGGACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc #### Sart1_ID966_9 --> 0 - 0 Original Alignment ACAG CAAAAACCTCGTTCTATCCTGGCC-AAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtgagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTCAAAT-TGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from CESAR ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtgagcctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTCAAATTGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Spaln_aa2Genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtgagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTCAAATTGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Spaln_nt2Genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtgagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTCAAATTGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Pairagon ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtgagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTCAAATTGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Exonerate_protein2genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtgagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTCAAATTGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Exonerate_coding2genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtgagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTCAAATTGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from GeneWise ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtgagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTCAAATTGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGCTTTGGTG-GAGCACTTTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGCTTTGGTGGAGCACTTTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGCTTTGGTGGAGCACTTTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGCTTTGGTG-GAGCACTTTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGCTTTGGTG-GAGCACTTTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGCTTTGGTGGAGCACTTTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGCTTTGGTGGAGCACTTTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGCTTTGGTGGAGCACTTTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagtAAAGTGAAAACTCTGGGAGAAGACGACCCCTGGCTGGACGATACTGCACGCATGGA-AGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagtAAAGTGAAAACTCTGGGAGAAGACGACCCCTGGCTGGACGATACTGCACGCATGGAAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCCTGGCTGGACGATACTGCACGCATGGAAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCCTGGCTGGACGATACTGCACGCATGGAAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCCTGGCTGGACGATACTGCACGCATGGA-AGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCCTGGCTGGACGATACTGCACGCATGGAAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCCTGGCTGGACGATACTGCACGCATGGAAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCCTGGCTGGACGATACTGCACGCATGGAAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCA-GCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCACGCACCAA-TACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAATGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCACGCACCAATACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAATGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCACGCACCAATACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAATGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCACGCACCAATACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAATGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCA-GCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCACGCACCAA-TACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAATGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCACGCACCAATACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAATGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCACGCACCAATACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAATGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCACGCACCAATACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAATGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGG-AAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccaggaCCCCAAGACTCATGGCAAAGTCTCCC-TGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccaggaCCCCAAGACTCATGGCAAAGTCTCCCTGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGCAAAGTCTCCCTGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGCAAAGTCTCCCTGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGCAAAGTCTCCCTGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGCAAAGTCTCCCTGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGCAAAGTCTCCCTGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGCAAAGTCTCCCTGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGT-GTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTCGTTATAAAAA-GAATTGGAAAGACCTTGTGTGTGCATTTCGCCTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTggtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTCGTTATAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGCCTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTggtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTCGTTATAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGCCTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Spaln_nt2Genome CTTCTAGCCTGT-GTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTCGTTATAAA-AAGAATTGGAAAGACCTTGTGTGTGCATTTCGCCT---GAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Pairagon CTTCTAGCCTGT-GTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTCGTTATAAA-AAGAATTGGAAAGACCTTGTGTGTGCATTTCGCCT---GAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTCGTTATAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGCCTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTCGTTATAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGCCTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTCGTTATAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGCCTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa #### Sec31b_ID9040_12 --> 0 - 0 Original Alignment GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGAC-AGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACCAGAGCAC-TAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from CESAR GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACCAGAGCACTAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Spaln_aa2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACCAGAGCACTAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Spaln_nt2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGAC-AGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACCAGAGCAC-TAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Pairagon GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGA-CAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACCAGAGCAC-TAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Exonerate_protein2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACCAGAGCACTAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Exonerate_coding2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACCAGAGCACTAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from GeneWise GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACCAGAGCACTAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta #### Sec31b_ID9047_5 --> 0 - 0 Original Alignment AACCCCCCAGAGGACATCAAGGCATTGTCT-TGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTCTGGA-CCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from CESAR AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTCTGGACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Spaln_aa2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTCTGGACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Spaln_nt2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTCTGGACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Pairagon AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTCTGGACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Exonerate_protein2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTCTGGACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Exonerate_coding2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTCTGGACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from GeneWise AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTCTGGACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa #### Sec31b_ID9048_4 --> 0 - 0 Original Alignment GGCAATCTCCTGGCCTCAGGAGCCAGT-GACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTCGACTCTG-GATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGACACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from CESAR GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTCGACTCTGGATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGACACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Spaln_aa2Genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTCGACTCTGGATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGACACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Spaln_nt2Genome GGCAATCTCCTGGCCTCAGGAGCCAGT-GACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTCGACTCTG-GATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGACACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Pairagon GGCAATCTCCTGGCCTCAGGAGCCAGT-GACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTCGACTCTG-GATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGACACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Exonerate_protein2genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTCGACTCTGGATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGACACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Exonerate_coding2genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTCGACTCTGGATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGACACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from GeneWise GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTCGACTCTGGATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGACACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTG-CTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagagGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAAAATTATTCAACATTGCCTGTTGG-GGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagagGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAAAATTATTCAACATTGCCTGTTGGGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAAAATTATTCAACATTGCCTGTTGGGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAAAATTATTCAACATTGCCTGTTGGGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAAAATTATTCAACATTGCCTGTTGGGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAAAATTATTCAACATTGCCTGTTGGGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAAAATTATTCAACATTGCCTGTTGGGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAAAATTATTCAACATTGCCTGTTGGGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGG-AGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGGCAGCCGCC-CCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATggtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGGCAGCCGCCCCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATggtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGGCAGCCGCCCCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGGCAGCCGCCCCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGG-AGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGGCAGCCGCC-CCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGGCAGCCGCCCCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGGCAGCCGCCCCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGGCAGCCGCCCCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAG-AAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAAT-CTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAG-AAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAAT-CTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAG-AAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAAT-CTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAG-GCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtgggttggaggtattcaaattcctgcccatccctgtgcacaggAAGACACTGGAGCGCTTCAG-CATCTGCCGATATGACCTGGCAGAGATTCAAGCTGTCTTT---AGCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaagtttggaccctacattaatcggacatagggagttggg Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtgggttggaggtattcaaattcctgcccatccctgtgcacaggAAGACACTGGAGCGCTTCAGCATCTGCCGATATGACCTGGCAGAGATTCAAGCTGTCTTT---AGCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaagtttggaccctacattaatcggacatagggagttggg Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtgggttggaggtattcaaattcctgcccatccctgtgcacagGAAGACACTGGAGCGCTTCAGCATCTGCCGATATGACCTGGCAGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaagtttggaccctacattaatcggacatagggagttggg Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtgggttggaggtattcaaattcctgcccatccctgtgcacagGAAGACACTGGAGCGCTTCAGCATCTGCCGATATGACCTGGCAGAGATTCAAGCTGTCTTTA---GCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaagtttggaccctacattaatcggacatagggagttggg Alignment from Pairagon GAAGACGCTGGAG-GCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtgggttggaggtattcaaattcctgcccatccctgtgcacagGAAGACACTGGAGCGCTTCAG-CATCTGCCGATATGACCTGGCAGAGATTCAAGCTGTCTTTA---GCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaagtttggaccctacattaatcggacatagggagttggg Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtgggttggaggtattcaaattcctgcccatccctgtgcacagGAAGACACTGGAGCGCTTCAGCATCTGCCGATATGACCTGGCAGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaagtttggaccctacattaatcggacatagggagttggg Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtgggttggaggtattcaaattcctgcccatccctgtgcacagGAAGACACTGGAGCGCTTCAGCATCTGCCGATATGACCTGGCAGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaagtttggaccctacattaatcggacatagggagttggg Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtgggttggaggtattcaaattcctgcccatccctgtgcacagGAAGACACTGGAGCGCTTCAGCATCTGCCGATATGACCTGGCAGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaagtttggaccctacattaatcggacatagggagttggg #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCT-GGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagcaGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACA-CATTGAAGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCT---GGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagcaGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACAC---ATTGAAGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAAGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAAGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCT-GGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACAC-ATTGAAGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAAGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAAGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAAGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAAT-TTTGTGGGGCTCCTAATTGGACCCag atagaaagaatatggacaatagataggttatttattcctttacctcctagaCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCAGAAATTAATCTTTGTGG-CCTACTAATTGGTCCCaggtaacgaattagtggtttgtggccctaggtgtccattgtagttcaagatt Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag atagaaagaatatggacaatagataggttatttattcctttacctcctagaCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCAGAAATTAATCTTTGTGGCCTACTAATTGGTCCCaggtaacgaattagtggtttgtggccctaggtgtccattgtagttcaagatt Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG atagaaagaatatggacaatagataggttatttattcctttacctcctagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCAGAAATTAATCTTTGTGGCCTACTAATTGGTCCCAGgtaacgaattagtggtttgtggccctaggtgtccattgtagttcaagatt Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG atagaaagaatatggacaatagataggttatttattcctttacctcctagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCAGAAATTAATCTTTGTGGCCTACTAATTGGTCCCAGgtaacgaattagtggtttgtggccctaggtgtccattgtagttcaagatt Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG atagaaagaatatggacaatagataggttatttattcctttacctcctagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCAGAAATTAATCTTTGTGGCCTACTAATTGGTCCCAGgtaacgaattagtggtttgtggccctaggtgtccattgtagttcaagatt Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG atagaaagaatatggacaatagataggttatttattcctttacctcctagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCAGAAATTAATCTTTGTGGCCTACTAATTGGTCCCAGgtaacgaattagtggtttgtggccctaggtgtccattgtagttcaagatt Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG atagaaagaatatggacaatagataggttatttattcctttacctcctagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCAGAAATTAATCTTTGTGGCCTACTAATTGGTCCCAGgtaacgaattagtggtttgtggccctaggtgtccattgtagttcaagatt Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG atagaaagaatatggacaatagataggttatttattcctttacctcctagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCAGAAATTAATCTTTGTGGCCTACTAATTGGTCCCAGgtaacgaattagtggtttgtggccctaggtgtccattgtagttcaagatt #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCCAGCACAACC-AAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCCAGCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCCAGCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCCAGCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCCAGCACAA-CCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCCAGCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCCAGCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCCAGCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGAC-CGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCCAAACCCCAT-GGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCCAAACCCCATGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCCAAACCCCATGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCCAAACCCCATGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCCAAACCCCATGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCCAAACCCCATGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGAC-CGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCCAAACCCCATGG-GGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCCAAACCCCATGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCA-GAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgcagagAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCACGAGACTG-GGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgcagagAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCACGAGACTGGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aagttttaatagttaaaaaaggtcagatgacttcttcctctctgca gAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCACGAGACTGGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCACGAGACTGGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Pairagon AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCA-GAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCACGAGACTG-GGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Exonerate_protein2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgCAGAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCACGAGACTGGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Exonerate_coding2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgCAGAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCACGAGACTGGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from GeneWise -----------------CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagATGACTTCTTCCTCTCTGCAGAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCTGCATCACGAGACTGGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACT-GCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTCGCTCTGG-ACTAAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTCGCTCTGGACTAAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTCGCTCTGGACTAAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTCGCTCTGGACTAAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACT-GCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTCGCTCT-GGACTAAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTCGCTCTGGACTAAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTCGCTCTGGACTAAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTCGCTCTGGACTAAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga #### Sfxn3_ID9291_9 --> 1 - 2 Original Alignment cTTGGTATTTGCCACA-CCCCTGTGCTGCGCTCTGTTCCCTCAGAGAag actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagcTTGGTATTCGCCACCCCCCCTGT-TTGTGCCTTGTTTCCGCAGAGAgcgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from CESAR cTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAag actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagcTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCGCAGAGAgcgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Spaln_aa2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Spaln_nt2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Pairagon CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Exonerate_protein2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Exonerate_coding2genome actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagcttggtattcgccaccccccctgtttgtgccttgtttccgcagagagcgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from GeneWise CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc #### Shoc2_ID11421_7 --> 0 - 1 Original Alignment AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAG-AACCTGCTCACTCACCTTCCTGAGGAAATCg gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCTCACCCACCTTGGTCTTGGCGAGCAACCTGCTCA-TCACCTTCCTGAAGAAATTggtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from CESAR AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCTCACCCACCTTGGTCTTGGCGAGCAACCTGCTCATCACCTTCCTGAAGAAATTggtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Spaln_aa2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCTCACCCACCTTGGTCTTGGCGAGCAACCTGCTCATCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Spaln_nt2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAG-AACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCTCACCCACCTTGGTCTTGGCGAGCAACCTGCTCA-TCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Pairagon AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAG-AACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCTCACCCACCTTGGTCTTGGCGAGCAACCTGCTCA-TCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Exonerate_protein2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCTCACCCACCTTGGTCTTGGCGAGCAACCTGCTCATCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Exonerate_coding2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCTCACCCACCTTGGTCTTGGCGAGCAACCTGCTCATCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from GeneWise AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCTCACCCACCTTGGTCTTGGCGAGCAACCTGCTCATCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTG-TCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacaggCCA---CCTGGGAGCCTACTCAGAAA-GATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacaggCCA---CCTGGGAGCCTACTCAGAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCCA---CCTGGGAGCCTACTCAGAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTG-TCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCC---ACCTGGGAGCCTACTCAG-AAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCC---ACCTGGGAGCCTACTCAGAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCCA---CCTGGGAGCCTACTCAGAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Exonerate_coding2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCCA---CCTGGGAGCCTACTCAGAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCCA---CCTGGGAGCCTACTCAGAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATC-TCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg g aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagttATGCCAGAAGCTGCGACTGAAACCTTGGAT---GAATGGCAGTCCATCCTCAGAAA-CACCTCCACTTGCAACACAATTTTGGAGTCCCTGTCTCGGGAAggtaagtgtgccagttggatattagccatgcctcttacttcttcccccagg Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg g aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagttATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGTCCATCCTCAGAAACACCTCCACTTGCAACACAATTTTGGAGTCCCTGTCTCGGGAAggtaagtgtgccagttggatattagccatttctgttgctgccttgtgtagg Alignment from Spaln_aa2Genome GTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagttatgccagaagctgcgactgaaaccttggatgaatggcagtccatcctcagAAAC------------ACCTCCACTTGCAACACAATTTTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccatgcctcttacttcttcccccagG Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTT---GGATGAATGGCAGTCCATCCTCAGAAACACCTCCACTTGCAACACAATTTTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccatgcctcttacttcttcccccagG Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCAT-CTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTT---GGATGAATGGCAGTCCATCCTCAGAAA-CACCTCCACTTGCAACACAATTTTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccatgcctcttacttcttcccccagG Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGTCCATCCTCAGAAACACCTCCACTTGCAACACAATTTTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccatgcctcttacttcttcccccagG Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGTCCATCCTCAGAAACACCTCCACTTGCAACACAATTTTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccatgcctcttacttcttcccccagG Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGTCCATCCTCAGAAACACCTCCACTTGCAACACAATTTTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccatgcctcttacttcttcccccagG #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCA-TCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagcTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTCTCTGCAC-TGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtatctgtggcttctct Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagcTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTCTCTGCACTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctcttttctttatcc Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTCTCTGCACTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtatctgtggcttctct Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTCTCTGCACTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtatctgtggcttctct Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAAC-CCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTCTCTGCA-CTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtatctgtggcttctct Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTCTCTGCACTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtatctgtggcttctct Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTCTCTGCACTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtatctgtggcttctct Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCC----------------------------------------------------- caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTCTCTGCACTGATACTGATAGAGAAACACCCCCTTCCCAGGTAGGTTGTCAAGTTAACATTGAGTGCCATACTGTATCTGTGGCTTCTCT #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTA-CACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagaaCACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACCACAGCT-TCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatctttcccctttatgttttc Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagaaCACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACCACAGCTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatcactgatgatgtgttttta Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACCACAGCTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatctttcccctttatgttttc Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACCACAGCTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatctttcccctttatgttttc Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTA-CACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACCACAGCT-TCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatctttcccctttatgttttc Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACCACAGCTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatctttcccctttatgttttc Alignment from Exonerate_coding2genome agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagaacaccaaaacttctttggactagatgaggcactaggccctgtggctttgagtctccaacgggaggaaaaggagggcagtggaggggcccccctaccacagcttcgagtcattgtgcgaaccatgcaggtaagtgacatcactgggtgcaatagcctatctttcccctttatgttttc Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACCACAGCTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatctttcccctttatgttttc #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCAT-ATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATCATCCCAA-CATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from CESAR ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATCATCCCAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATCATCCCAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATCATCCCAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Pairagon ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAG--------------------------------------------------- ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATCATCCCAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAGTACTGTGCTACAACATGATTATATCACAATGAGGACAGTTGGCGCAGCA Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATCATCCCAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATCATCCCAACATCTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATC-GGCTCCTCTTGCTCATCTGTGGCTg cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagtgTTTGCATACTCTAGTAGTTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTCGGTTCAT-CTGCTCATCTGTGGCTggtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagtgTTTGCATACTCTAGTAGTTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTCGGTTCATCTGCTCATCTGTGGCTggtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTCGGTTCATCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAAT-CGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTCGGTTCATC-TGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTCGGTTCATCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTCGGTTCATCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTCGGTTCATCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTCGGTTCATCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTG-CTCCAGCCATCCCGAGTGCAGCCAGAA gccaggtatgggatgcctgcggtatatcgttaccatctttttataaacagctATTCAACTCTTTGTACATTCAA---TCCTGCATACTACCAGATgtcagaagctgggaattacagcatggttaaatttttcttctctctggctt Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaggtatgggatgcctgcggtatatcgttaccatctttttataaacagctATTCAACTCTTTGTACAT--TCAATCCTGCATACTACCAGATgtcagaagctgggaattacagcatggttaaatttttctcttgcactgtct Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCC gccaggtatgggatgcctgcggtatatcgttaccatctttttataaacagctattcaactctttgtacattcaatcctgcatactaccagatgtcagaagctgggaattacagCA------TGGTTAAATTTTTCTTCTCTC Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaggtatgggatgcctgcggtatatcgttaccatctttttataaacagCTATTCAACTCTTTGT--ACATTCAATCCTGCATACTACCAGATgtcagaagctgggaattacagcatggttaaatttttcttctctctggctt Alignment from Pairagon CTATTCAGCTCTTT gccaggtatgggatgcctgcggtatatcgttaccatctttttataaacagCTATTCAACTCTTTgtacattcaatcctgcatactaccagatgtcagaagctgggaattacagcatggttaaatttttcttctctctggctt Alignment from Exonerate_protein2genome AGTG gccaggtatgggatgcctgcggtatatcgttaccatctttttataaacagctattcaactctttgtacattcaatcctgcatactaccagatgtcagaagctgggaattacagcatggttaaatttttcttctctctgGCTT Alignment from Exonerate_coding2genome AGTG gccaggtatgggatgcctgcggtatatcgttaccatctttttataaacagctattcaactctttgtacattcaatcctgcatactaccagatgtcagaagctgggaattacagcatggttaaatttttcttctctctgGCTT Alignment from GeneWise ------------------TTTGTGCTCCAGCCATCCCGAGTG gccaggtatgggatgcctgcggtatatcgttaccatctttttataaacagctattcaactctttgtacattcaatcctgcatactaccagatgtcagaagCTGGGAATTACAGCATGGTTAAATTTTTCTTCTCTCTGGCTT #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGGACACCTCTTACG-ACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg tgggaattacagcatggttaaatttttctcttgcactgtcttgcttgcagAGTCAGAAAGAGACACCTCTTACACACCTTAC-GAAAGATCCATACATTCTGATAGCTGCAggtacacggactttaataattatttggtagcatgaaacacactagagggat Alignment from CESAR AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg tgggaattacagcatggttaaatttttctcttgcactgtcttgcttgcagAGTCAGAAAGAGACACCTCTTACACACCTTACGAAAGATCCATACATTCTGATAGCTGCAggtacacggactttaataattatttggtagcatgaaacacactagagggat Alignment from Spaln_aa2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggaattacagcatggttaaatttttctcttgcactgtcttgcttgcagAGTCAGAAAGAGACACCTCTTACACACCTTACGAAAGATCCATACATTCTGATAGCTGCAGgtacacggactttaataattatttggtagcatgaaacacactagagggat Alignment from Spaln_nt2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggaattacagcatggttaaatttttctcttgcactgtcttgcttgcagAGTCAGAAAGAGACACCTCTTACACACCTTACGAAAGATCCATACATTCTGATAGCTGCAGgtacacggactttaataattatttggtagcatgaaacacactagagggat Alignment from Pairagon GTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggaattacagcatggttaaatttttctcttgcactgtcttgcttgcag------------------------------AGTCAGAAAGAGACACCTCTTACACACCTTACGAAAGATCCATACATTCTGATAGCTGCAGgtacacggactttaataattatttggtagcatgaaacacactagagggat Alignment from Exonerate_protein2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggaattacagcatggttaaatttttctcttgcactgtcttgcttgcagAGTCAGAAAGAGACACCTCTTACACACCTTACGAAAGATCCATACATTCTGATAGCTGCAGgtacacggactttaataattatttggtagcatgaaacacactagagggat Alignment from Exonerate_coding2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggaattacagCATGGTTAAATTTTTCTCTTGCACTGTCTTGCTTGCAG------AGTCAGAAAGAGACACCTCTTACACACCTTACGAAAGATCCATACATTCTGATAGCTGCAGgtacacggactttaataattatttggtagcatgaaacacactagagggat Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggaattacagCATGGTTAAATTTTTCTCTTGCACTGTCTTGCTTGCAG------AGTCAGAAAGAGACACCTCTTACACACCTTACGAAAGATCCATACATTCTGATAGCTGCAGgtacacggactttaataattatttggtagcatgaaacacactagagggat #### Slc18a2_ID12944_11 --> 1 - 0 Original Alignment gTGGCTGTGTGCTCTTCTGGGAATGATA-GTTGTTGGGATCAGCATTTTATGT atggatccagttttccctcactagagagctcccctctttttccttcctaggTGGCTGTGTGCCCTTTTGGGAATGACACGTAGTAGGCA-CACCATCTTATGTgtgaggcaggggggacagtttccttagtcccaaatgtggatctcaatcag Alignment from CESAR gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatccagttttccctcactagagagctcccctctttttccttcctaggTGGCTGTGTGCCCTTTTGGGAATGACACGTAGTAGGCACACCATCTTATGTgtgaggcaggggggacagtttccttagtcccaaatgtggatctcaatcag Alignment from Spaln_aa2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatccagttttccctcactagagagctcccctctttttccttcctagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGTAGGCACACCATCTTATGTgtgaggcaggggggacagtttccttagtcccaaatgtggatctcaatcag Alignment from Spaln_nt2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatccagttttccctcactagagagctcccctctttttccttcctagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGTAGGCACACCATCTTATGTgtgaggcaggggggacagtttccttagtcccaaatgtggatctcaatcag Alignment from Pairagon GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatccagttttccctcactagagagctcccctctttttccttcctagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGTAGGCACACCATCTTATGTgtgaggcaggggggacagtttccttagtcccaaatgtggatctcaatcag Alignment from Exonerate_protein2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatccagttttccctcactagagagctcccctctttttccttcctagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGTAGGCACACCATCTTATGTgtgaggcaggggggacagtttccttagtcccaaatgtggatctcaatcag Alignment from Exonerate_coding2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatccagttttccctcactagagagctcccctctttttccttcctagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGTAGGCACACCATCTTATGTgtgaggcaggggggacagtttccttagtcccaaatgtggatctcaatcag Alignment from GeneWise GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatccagttttccctcactagagagctcccctctttttccttcctagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGTAGGCACACCATCTTATGTgtgaggcaggggggacagtttccttagtcccaaatgtggatctcaatcag #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTC-CTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gaggagaggagtttacctaggctatcttacagattagttcttttcaatagtTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGAC---------CTTGGGAGCAATATATTCCCTCCTCCAGT-AATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATggtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gaggagaggagtttacctaggctatcttacagattagttcttttcaatagtTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGAC---------CTTGGGAGCAATATATTCCCTCCTCCAGTAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATggtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGAC---------CTTGGGAGCAATATATTCCCTCCTCCAGTAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCC-TGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGA---------CCTTGGGAGCAATATATTCCCTCCTCCA-GTAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGG---TCCCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGA---------CCTTGGGAGCAATATATTCCCTCCTCCAGTAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGG---TCCCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGAC---------CTTGGGAGCAATATATTCCCTCCTCCAGTAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGACCTT---------GGGAGCAATATATTCCCTCCTCCAGTAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATG-ATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctcctctctttgattgtttttttttcaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGCATGA-TACAGCCAGTCTTtgtcggtcccactcctagtgtgatgttgtaaggctactgcggggactgttt Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctcctctctttgattgtttttttttcaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGCATGATACAGCCAGTCTTtgtcggtcccactcctagtgtgatgttgtaaggctactgcggctgtgtgga Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGCATGATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggggactgttt Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGCATGATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggggactgttt Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGCATGATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggggactgttt Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGCATGATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggggactgttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGCATGATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggggactgttt #### Slc22a20_ID1345_8 --> 2 - 2 Original Alignment atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTG-TATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag ttgccagtgcttgcatgtccagctcggactccttacttcctccctcccaggtCTGCAGATGTTGCGGACTGTACCAGCTGAACTAGGGAAGGGCTGTCTGGCGAGCTCGTTCATCTGTGTACTACCTTT-CATGGGGGGACTGTATCCA------ATCaggtacccatgggaggatgccaccatagctaaggtactatttaggttaccac Alignment from CESAR atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag ttgccagtgcttgcatgtccagctcggactccttacttcctccctcccaggtCTGCAGATGTTGCGGACTGTACCAGCTGAACTAGGGAAGGGCTGTCTGGCGAGCTCGTTCATCTGTGTACTACCTTTCATGGGGGGACTGTATCCA------ATCaggtacccatgggaggatgccaccatagctaaggtactatttaggttaccac Alignment from Spaln_aa2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttgccagtgcttgcatgtccagctcggactccttacttcctccctcccagGTCTGCAGATGTTGCGGACTGTACCAGCTGAACTAGGGAAGGGCTGTCTGGCGAGCTCGTTCATCTGTGTACTACCTTTCATGGGGGGACTGTATCCA------ATCAGgtacccatgggaggatgccaccatagctaaggtactatttaggttaccac Alignment from Spaln_nt2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttgccagtgcttgcatgtccagctcggactccttacttcctccctcccagGTCTGCAGATGTTGCGGACTGTACCAGCTGAACTAGGGAAGGGCTGTCTGGCGAGCTCGTTCATCTGTGTACTACCTTTCATGGGGGGACTGTATCC------AATCAGgtacccatgggaggatgccaccatagctaaggtactatttaggttaccac Alignment from Pairagon ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttgccagtgcttgcatgtccagctcggactccttacttcctccctcccagGTCTGCAGATGTTGCGGACTGTACCAGCTGAACTAGGGAAGGGCTGTCTGGCGAGCTCGTTCATCTGTGTACTACCTTTCATGGGGGGACTGTATCC------AATCAGgtacccatgggaggatgccaccatagctaaggtactatttaggttaccac Alignment from Exonerate_protein2genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGA ttgccagtgcttgcatgtccagctcggactccttacttcctccctcccagGTCTGCAGATGTTGCGGACTGTACCAGCTGAACTAGGGAAGGGCTGTCTGGCGAGCTCGTTCATCTGTGTACTACCTTTCATGGGGGGACTGTATCCAATCAGgtacccatgggaggatgccaccatagctaaggtactatttaggttaccac Alignment from Exonerate_coding2genome ttgccagtgcttgcatgtccagctcggactccttacttcctccctcccaggtctgcagatgttgcggactgtaccagctgaactagggaagggctgtctggcgagctcgttcatctgtgtactacctttcatggggggactgtatccaatcaggtacccatgggaggatgccaccatagctaaggtactatttaggttaccac Alignment from GeneWise ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttgccagtgcttgcatgtccagctcggactccttacttcctccctcccagGTCTGCAGATGTTGCGGACTGTACCAGCTGAACTAGGGAAGGGCTGTCTGGCGAGCTCGTTCATCTGTGTACTACCTTTCATGGGGGGACTGTATCCA------ATCAGgtacccatgggaggatgccaccatagctaaggtactatttaggttaccac #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATG---ATG-TTTGGCTACCTGGCGGACag agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTG---TTCGGTGCCATGATGTTGCTTTG-TTACCTTGCAGATaggtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATG---TTTGGCTACCTGGCGGACag agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGTTC---GGTGCCATGATGTTGCTTTGTTACCTTGCAGATaggtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGTTCGGTGCCATGATGTTGCTTTGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTT---TGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGT---TCGGTGCCATGATGTTGCTTTGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGT---TTGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGTTC---GGTGCCATGATGTTGCTTTGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGTTCGGTGCCATGATGTTGCTTTGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Exonerate_coding2genome agccactaaaattgacaaatttcagatctcacccctctctctgtccacagtggaacctttgctcacatagagcctttcaccgattggcccagtcactattcatggtaggagtgttcggtgccatgatgttgctttgttaccttgcagataggtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGTTCGGTGCCATGATGTTGCTTTGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCA-GCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaatgagtgactctatccacctccttttcatttaatggacaataggTTCTTCATTGAGTCACACCCGAT-GTACTCATCATCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAAGGGCCTAAACTGTGCATTGAAgtaagatctatttattcctagacactgcctgtaatcttactctggttcgt Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaatgagtgactctatccacctccttttcatttaatggacaataggTTCTTCATTGAGTCACACCCGATGTACTCATCATCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAAGGGCCTAAACTGTGCATTGAAgtaagatctatttattcctagacactgcctgtaatcttactctggttcgt Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaatgagtgactctatccacctccttttcatttaatggacaatagGTTCTTCATTGAGTCACACCCGATGTACTCATCATCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAAGGGCCTAAACTGTGCATTGAAgtaagatctatttattcctagacactgcctgtaatcttactctggttcgt Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaatgagtgactctatccacctccttttcatttaatggacaatagGTTCTTCATTGAGTCACACCCGATGTACTCATCATCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAAGGGCCTAAACTGTGCATTGAAgtaagatctatttattcctagacactgcctgtaatcttactctggttcgt Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaatgagtgactctatccacctccttttcatttaatggacaatagGTTCTTCATTGAGTCACACCCGATGTACTCATCATCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAAGGGCCTAAACTGTGCATTGAAgtaagatctatttattcctagacactgcctgtaatcttactctggttcgt Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaatgagtgactctatccacctccttttcatttaatggacaatagGTTCTTCATTGAGTCACACCCGATGTACTCATCATCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAAGGGCCTAAACTGTGCATTGAAgtaagatctatttattcctagacactgcctgtaatcttactctggttcgt Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaatgagtgactctatccacctccttttcatttaatggacaatagGTTCTTCATTGAGTCACACCCGATGTACTCATCATCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAAGGGCCTAAACTGTGCATTGAAgtaagatctatttattcctagacactgcctgtaatcttactctggttcgt Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaatgagtgactctatccacctccttttcatttaatggacaatagGTTCTTCATTGAGTCACACCCGATGTACTCATCATCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAAGGGCCTAAACTGTGCATTGAAgtaagatctatttattcctagacactgcctgtaatcttactctggttcgt #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGA-AGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcaggCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGACAGTATGA-AGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACtggtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcaggCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGACAGTATGAAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACtggtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGACAGTATGAAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTGGTACCATGCTA---CTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGACAGTATGAAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGA-AGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGACAGTATGA-AGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGACAGTATGAAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGACAGTATGAAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGACAGTATGAAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTGGGG-CACCCATTCGACACTGTAAAG atggacatgttacttgggcctggcattttgactctgcttttctctactaggaGCTGTGGGCCTGGTCCTGGGGCCACCCAT-TGACACTGTAAAGgtgagaaacatgctgggatgagagcaagtgttgcaaaatttgggtgtggg Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacatgttacttgggcctggcattttgactctgcttttctctactaggaGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtgagaaacatgctgggatgagagcaagtgttgcaaaatttgggtgtggg Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacatgttacttgggcctggcattttgactctgcttttctctactagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtgagaaacatgctgggatgagagcaagtgttgcaaaatttgggtgtggg Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacatgttacttgggcctggcattttgactctgcttttctctactagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtgagaaacatgctgggatgagagcaagtgttgcaaaatttgggtgtggg Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacatgttacttgggcctggcattttgactctgcttttctctactagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtgagaaacatgctgggatgagagcaagtgttgcaaaatttgggtgtggg Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacatgttacttgggcctggcattttgactctgcttttctctactagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtgagaaacatgctgggatgagagcaagtgttgcaaaatttgggtgtggg Alignment from Exonerate_coding2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atggacatgttacttgggcctggcattttgactctgcttttctctactagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtgagaaacatgctgggatgagagcaagtgttgcaaaatttgggtgtggg Alignment from GeneWise atggacatgttacttgggcctggcattttgactctgcttttctctactaggagctgtgggcctggtcctggggccacccattgacactgtaaaggtgagaaacatgctgggatgagagcaagtgttgcaaaatttgggtgtggg #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAAAGCACGTACCAG-GGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGCGGCATTG-TGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from CESAR GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGCGGCATTGTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGCGGCATTGTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAAAGCACGTACCAG-GGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGCGGCATTGT-GACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Pairagon GTGCGGTTACAGACCCAAAGCACGTACCAG-GGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGCGGCATTGT-GACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGCGGCATTGTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Exonerate_coding2genome attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaaggtgcgcttacaaacccaaagcacatatcggcggcattgtgactgtgttgctaagacatatcgtcatcagtcagtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGCGGCATTGTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGT-CAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGT-CAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Exonerate_coding2genome CGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCAGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ACCTAAGTTTTGCTAATGTTTTTATACAAACTGGCCCTTATACTTTGCAGGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa #### Slc25a45_ID1294_5 --> 0 - 1 Original Alignment GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGT-GCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCa attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAG-CCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCagtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from CESAR GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCa attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCagtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Spaln_aa2Genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Spaln_nt2Genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Pairagon GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTG-------TGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGCC-------TGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Exonerate_protein2genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Exonerate_coding2genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from GeneWise GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGG-ATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagcTACCACTTGGCTGGCCATCAGCT-TTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from CESAR cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagcTACCACTTGGCTGGCCATCAGCTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagCTACCACTTGGCTGGCCATCAGCTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Spaln_nt2Genome CTACCACCTGGTTGGG-ATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagCTACCACTTGGCTGGCCATCAGCTT-TTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Pairagon CTACCACCTGGTTGG-GATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagCTACCACTTGGCTGGCCATCAGCTT-TTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagCTACCACTTGGCTGGCCATCAGCTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Exonerate_coding2genome GACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttccTCTAGCTACCACTTGGCTGGCCATCAGCTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from GeneWise GCGCGGGGAAACGCC------CCTCGGGACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtAGGAAAGGTAACTTGTTTCTGCTTTCCTCTAGCTACCACTTGGCTGGCCATCAGCTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGC-ATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacaggtGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCCATCCTCCTCC-CATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacaggtGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGG-CATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCCATCCTCCTC-CCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAG-CCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagatGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCGAGAGGGAGCCCAGAACCAG-GCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagatGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCGAGAGGGAGCCCAGAACCAGGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCGAGAGGGAGCCCAGAACCAGGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCC-AGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCGAGAGGGAGCCCAGAACCAG-GCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAG-CCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCGAGAGGGAGCCCAGAACCAG-GCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCGAGAGGGAGCCCAGAACCAGGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Exonerate_coding2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCGAGAGGGAGCCCAGAACCAGGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCGAGAGGGAGCCCAGAACCAGGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGG-AGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttaggtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGCAGCCTGACCT-CTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttaggtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGCAGCCTGACCTCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGCAGCCTGACCTCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGG-AGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGCAGCCTGACCT-CTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGG-AGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGCAGCCTGACCT-CTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGCAGCCTGACCTCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGCAGCCTGACCTCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGCAGCCTGACCTCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCT-TTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTT-ACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGAC-CTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagaCTTTTAATTGCAGGGACTGAAACCTCGGACCCTGCCACAGA-TCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagaCTTTTAATTGCAGGGACTGAAACCTCGGACCCTGCCACAGATCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCCTGCCACAGATCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACC-TGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCCTGCCACAGA-TCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTG---------TCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACC---------CTGCCACAGATCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCCTGCCACAGATCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCCTGCCACAGATCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCCTGCCACAGATCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg #### Slit1_ID8222_17 --> 1 - 2 Original Alignment aCGACTGAACAACAATGAGATTTCTATC-CTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat aAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagtCGACTAAACAACAATGAGATCTCTATCCCTAGAGG-CACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAatgtaagtaactgtatattctgtgttcgatatttagaAACCTCTGTAATAAC Alignment from CESAR aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat aAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagtCGACTAAACAACAATGAGATCTCTATCCCTAGAGGCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAatgtaagtaactgtctgataccccaatgctccccagaAACCTCTGTAATAAC Alignment from Spaln_aa2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCCTAGAGGCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgtatattctgtgttcgatatttagAAACCTCTGTAATAAC Alignment from Spaln_nt2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCCTAGAGGCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgtatattctgtgttcgatatttagAAACCTCTGTAATAAC Alignment from Pairagon ACGACTGAACAACAATGAGATTTCTAT-CCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCCTAGAGG-CACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgtatattctgtgttcgatatttagAAACCTCTGTAATAAC Alignment from Exonerate_protein2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCCTAGAGGCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgtatattctgtgttcgatatttagAAACCTCTGTAATAAC Alignment from Exonerate_coding2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCCTAGAGGCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgtatattctgtgttcgatatttagAAACCTCTGTAATAAC Alignment from GeneWise ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCCTAGAGGCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgtatattctgtgttcgatatttagAAACCTCTGTAATAAC #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAG-CGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGCTGGCAGGAGG-ACTGGATAGC---TATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGCTGGCAGGAGGACTGGAT---AGCTATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGCTGGCAGGAGGACTGGAT---AGCTATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGC-GGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGCTGGCAGGAGG-ACTGGATA---GCTATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGC-GGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGCTGGCAGGAGG-ACTGGATA---GCTATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGCTGGCAGGAGGACTGGAT---AGCTATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGCTGGCAGGAGGACTGGAT---AGCTATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGCTGGCAGGAGGACTGGAT---AGCTATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCT-CAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttttaagcagagaagcatgccacctaggtgactcgtctgttttgtcatagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTCAAGG-CAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtgagtgacttattatacttagtttctgttgtacctttttgatttaaaac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttttaagcagagaagcatgccacctaggtgactcgtctgttttgtcatagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTCAAGGCAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtgagtgacttattatacttagtttctgttgtacctttttgatttaaaac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttttaagcagagaagcatgccacctaggtgactcgtctgttttgtcatagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTCAAGGCAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtgagtgacttattatacttagtttctgttgtacctttttgatttaaaac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttttaagcagagaagcatgccacctaggtgactcgtctgttttgtcatagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTCAAGGCAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtgagtgacttattatacttagtttctgttgtacctttttgatttaaaac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttttaagcagagaagcatgccacctaggtgactcgtctgttttgtcatagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTCAAGGCAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtgagtgacttattatacttagtttctgttgtacctttttgatttaaaac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttttaagcagagaagcatgccacctaggtgactcgtctgttttgtcatagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTCAAGGCAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtgagtgacttattatacttagtttctgttgtacctttttgatttaaaac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttttaagcagagaagcatgccacctaggtgactcgtctgttttgtcatagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTCAAGGCAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtgagtgacttattatacttagtttctgttgtacctttttgatttaaaac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttttaagcagagaagcatgccacctaggtgactcgtctgttttgtcatagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTCAAGGCAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtgagtgacttattatacttagtttctgttgtacctttttgatttaaaac #### Snx15_ID1465_7 --> 2 - 1 Original Alignment aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCT------GCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATT-CTTCTGCAGGGTGTCTCAg agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagcaAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCCTTC-GCAGGGTGTTTCTggtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from CESAR aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCC------CCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagcaAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCCTTCGCAGGGTGTTTCTggtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Spaln_aa2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCC------CCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCCTTCGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Spaln_nt2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAG------CTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCCTTCGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Pairagon AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAG------CTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCCTTCGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Exonerate_protein2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCCTTCGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Exonerate_coding2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCCTTCGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from GeneWise AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCCTTCGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg #### Snx32_ID1069_9 --> 1 - 0 Original Alignment gAGCTTCCTGAAGCTGGCAGAG-CTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacaggAGCTTTCTAAAACTGGCAGAACCTGT-TGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from CESAR gAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacaggAGCTTTCTAAAACTGGCAGAACCTGTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Spaln_aa2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacagGAGCTTTCTAAAACTGGCAGAACCTGTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Spaln_nt2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacagGAGCTTTCTAAAACTGGCAGAACCTGTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Pairagon GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacagGAGCTTTCTAAAACTGGCAGAACCTGTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Exonerate_protein2genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacagGAGCTTTCTAAAACTGGCAGAACCTGTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Exonerate_coding2genome ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacaggagctttctaaaactggcagaacctgttgatcggctgcgggtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from GeneWise GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacagGAGCTTTCTAAAACTGGCAGAACCTGTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTC-TTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCCTTGG-ATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCCTTGGATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCCTTGGATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCCTTGGATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCCTTGGATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCCTTGGATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCCTTGGATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCCTTGGATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTG-GCCTTTAATGCCATTGTGCACAAACACcg tccaatactgatatggcagagtatttactgaccatttttctctgttgcagaTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTACGCCT-TAATGCCATCGTGCATAAACACcggtaagagtgtgaggtccatgacttagatatttgtgcacaggcattgtaag Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tccaatactgatatggcagagtatttactgaccatttttctctgttgcagaTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTACGCCTTAATGCCATCGTGCATAAACACcggtaagagtgtgaggtccatgacttagatatttgtgcacaggcattgtaag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatactgatatggcagagtatttactgaccatttttctctgttgcagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTACGCCTTAATGCCATCGTGCATAAACACCGgtaagagtgtgaggtccatgacttagatatttgtgcacaggcattgtaag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatactgatatggcagagtatttactgaccatttttctctgttgcagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTACGCCTTAATGCCATCGTGCATAAACACCGgtaagagtgtgaggtccatgacttagatatttgtgcacaggcattgtaag Alignment from Pairagon ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatactgatatggcagagtatttactgaccatttttctctgttgcagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTACGCCTTAATGCCATCGTGCATAAACACCGgtaagagtgtgaggtccatgacttagatatttgtgcacaggcattgtaag Alignment from Exonerate_protein2genome tccaatactgatatggcagagtatttactgaccatttttctctgttgcagataccccaatgtcaatgtgcataacttcaccaccagctggagagatgggctacgccttaatgccatcgtgcataaacaccggtaagagtgtgaggtccatgacttagatatttgtgcacaggcattgtaag Alignment from Exonerate_coding2genome tccaatactgatatggcagagtatttactgaccatttttctctgttgcagataccccaatgtcaatgtgcataacttcaccaccagctggagagatgggctacgccttaatgccatcgtgcataaacaccggtaagagtgtgaggtccatgacttagatatttgtgcacaggcattgtaag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatactgatatggcagagtatttactgaccatttttctctgttgcagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTACGCCTTAATGCCATCGTGCATAAACACCGgtaagagtgtgaggtccatgacttagatatttgtgcacaggcattgtaag #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCC-CAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCCAGGCAGAGG-AAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGaggtatgtgcatgtatgtgatctttagcagaagcttccattttatctctcag Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCCAGGCAGAGGAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGaggtatgtgcatgtatgtgatctttagcagttccttggattttttcctacag Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCCAGGCAGAGGAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagaagcttccattttatctctcag Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCCAGGCAGAGGAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagaagcttccattttatctctcag Alignment from Pairagon GATGAGCTGAGCG-CCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCCAGGCAGAGG-AAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagaagcttccattttatctctcag Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCCAGGCAGAGGAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagaagcttccattttatctctcag Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCCAGGCAGAGGAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagaagcttccattttatctctcag Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCCAGGCAGAGGAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagaagcttccattttatctctcag #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGC-CACTATGCTGCTGAGGAG actaggctgtggtggggccggacttcaatgtcatgtgcttgttcatgcagaGATGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCAAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCCTCCTGCATTGACATGGGCCAGGAGCTGCTTGCCAGGAGCCCATT-TGCTGCTCAGGAAgtgagtaagatctagataatgtcactacaaccaagcaactgggcccaccg Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG actaggctgtggtggggccggacttcaatgtcatgtgcttgttcatgcagaGATGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCAAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCCTCCTGCATTGACATGGGCCAGGAGCTGCTTGCCAGGAGCCCATTTGCTGCTCAGGAAgtgagtaagatctagataatgtcactacaaccaagcaactgggcccaccg Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG actaggctgtggtggggccggacttcaatgtcatgtgcttgttcatgcagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCAAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCCTCCTGCATTGACATGGGCCAGGAGCTGCTTGCCAGGAGCCCATTTGCTGCTCAGGAAgtgagtaagatctagataatgtcactacaaccaagcaactgggcccaccg Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG actaggctgtggtggggccggacttcaatgtcatgtgcttgttcatgcagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCAAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCCTCCTGCATTGACATGGGCCAGGAGCTGCTTGCCAGGAGCCCATTTGCTGCTCAGGAAgtgagtaagatctagataatgtcactacaaccaagcaactgggcccaccg Alignment from Pairagon GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG actaggctgtggtggggccggacttcaatgtcatgtgcttgttcatgcagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCAAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCCTCCTGCATTGACATGGGCCAGGAGCTGCTTGCCAGGAGCCCATTTGCTGCTCAGGAAgtgagtaagatctagataatgtcactacaaccaagcaactgggcccaccg Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG actaggctgtggtggggccggacttcaatgtcatgtgcttgttcatgcagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCAAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCCTCCTGCATTGACATGGGCCAGGAGCTGCTTGCCAGGAGCCCATTTGCTGCTCAGGAAgtgagtaagatctagataatgtcactacaaccaagcaactgggcccaccg Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG actaggctgtggtggggccggacttcaatgtcatgtgcttgttcatgcagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCAAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCCTCCTGCATTGACATGGGCCAGGAGCTGCTTGCCAGGAGCCCATTTGCTGCTCAGGAAgtgagtaagatctagataatgtcactacaaccaagcaactgggcccaccg Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG actaggctgtggtggggccggacttcaatgtcatgtgcttgttcatgcagAGATGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCAAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCCTCCTGCATTGACATGGGCCAGGAGCTGCTTGCCAGGAGCCCATTTGCTGCTCAGGAAgtgagtaagatctagataatgtcactacaaccaagcaactgggcccaccg #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAA-CAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACCAGCAGAGAC-TGAACATGGCAATGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACCAGCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACCAGCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACCAGCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Pairagon CCCCTGTTGGAA-CAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACCAGCAGAGAC-TGAACATGGCAATGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACCAGCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACCAGCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACCAGCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa #### Sptbn2_ID640_35 --> 1 - 0 Original Alignment cTTACAGGATGGCAAA-GAATACCTATTCCAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagaTTACAGGATGGTAAACGAAT-CCTATTCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from CESAR cTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagaTTACAGGATGGTAAACGAATCCTATTCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Spaln_aa2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagATTACAGGATGGTAAACGAATCCTATTCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Spaln_nt2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagATTACAGGATGGTAAACGAATCCTATTCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Pairagon CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagATTACAGGATGGTAAACGAATCCTATTCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Exonerate_protein2genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagATTACAGGATGGTAAACGAATCCTATTCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Exonerate_coding2genome tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagattacaggatggtaaacgaatcctattccaagcccaagatgaggtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from GeneWise CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagATTACAGGATGGTAAACGAATCCTATTCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTAC-CAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttggtgttcttgtaataattagaGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCCAAG-CAGTTTGGCTGCTaggtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttggtgttcttgtaataattagaGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCCAAGCAGTTTGGCTGCTaggtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCCAAGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCCAAGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCCAAGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCCAAGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCCAAGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCCAAGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACAT-CGATTCATTGAGGATGCCag caatagagtccttggtggttctttattgtggtttccatattgctttcaagaGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCCGAT-TATTGAGGATGCCaggtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag caatagagtccttggtggttctttattgtggtttccatattgctttcaagaGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCCGATTATTGAGGATGCCaggtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCCGATTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCCGATTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCCGATTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCCGATTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCCGATTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCCGATTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAAC-CTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGG-GCTCCAAAAGAACaggtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from CESAR CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaggaggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGGCTCCAAAAGAACaggtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Spaln_aa2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Spaln_nt2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACC-TGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGG-GCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Pairagon CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Exonerate_protein2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Exonerate_coding2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from GeneWise CCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGGTAGGTGGTCCTTTTATTCATCATTATGTTTTACAGGGCTCTGAATGGAATGCTGCCAACCCTAGAGGGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGTGGTCAA-AGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagcGGCTTAAGTGTGACGTCTGGTGGCCAACAGCCGAA-CTTCAAGCCTCTTTCTATCCAGACTATGtggtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagcGGCTTAAGTGTGACGTCTGGTGGCCAACAGCCGAACTTCAAGCCTCTTTCTATCCAGACTATGtggtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTGGTGGCCAACAGCCGAACTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTGGTGGCCAACAGCCGAACTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGTCAA-AGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTGGTGGCCAACAGCCGAA-CTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTGGTGGCCAACAGCCGAACTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTGGTGGCCAACAGCCGAACTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTGGTGGCCAACAGCCGAACTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAA-GCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagatAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATGCAC------CAAAAGCGCATTAG-CCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagatAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCAAAAGCGCATTAGCCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCAAAAGCGCATTAGCCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAA-GCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGA------TGCACCAAAAGCGCATTAG-CCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCG--TTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATGCA-------CCAAAAGCGCATTAG-CCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCAAAAGCGCATTAGCCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCAAAAGCGCATTAGCCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCAAAAGCGCATTAGCCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt #### Stip1_ID1994_7 --> 2 - 2 Original Alignment ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGC-AGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgatttgtctggcttttttatctaactaacagttgttctcttttacagctGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGACAGAGAGAACC-AGAGGACTACCGGCAGATTGCTaagtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from CESAR ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgatttgtctggcttttttatctaactaacagttgttctcttttacagctGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGACAGAGAGAACCAGAGGACTACCGGCAGATTGCTaagtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Spaln_aa2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGACAGAGAGAACCAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Spaln_nt2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGG-CAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGACAGAGAGAACC-AGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Pairagon CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAG-TGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGACAGAGAGAACC-AGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Exonerate_protein2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGACAGAGAGAACCAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Exonerate_coding2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGACAGAGAGAACCAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from GeneWise CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGACAGAGAGAACCAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGT-GAATTTACCCTCATGGCCag gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTCGAAC-TACCCTTATGGCTaggtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTCGAACTACCCTTATGGCTaggtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTCGAACTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTCGAACTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTCGAACTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTCGAACTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTCGAACTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTCGAACTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg #### Stx5a_ID2331_3 --> 1 - 1 Original Alignment gCGCATTGGGAAAGATCTCAGCAATACATTTGCC-AAGCTGGAGAAGCTAACAATCt atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcaggCGCATAGGGAAAGATCTGAGTAATACATTTGCCCAAAC-GGAGAAGTTAACAATCtgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from CESAR gCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcaggCGCATAGGGAAAGATCTGAGTAATACATTTGCCCAAACGGAGAAGTTAACAATCtgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Spaln_aa2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCCAAACGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Spaln_nt2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCCAAACGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Pairagon GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCCAAACGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Exonerate_protein2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCCAAACGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Exonerate_coding2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCCAAACGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from GeneWise GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCCAAACGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTC-ACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTCACTGTTA-TGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgctctgctcat Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTCACTGTTATGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgttctgtgcct Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTCACTGTTATGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgctctgctcat Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTCACTGTTATGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgctctgctcat Alignment from Pairagon ------------------------------------------------AGCACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT GGCAGGGTCTCTCAATGCTGTTTCATACATTTTTTTTCCTTCTCAAAAAGCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTCACTGTTATGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgctctgctcat Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTCACTGTTATGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgctctgctcat Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTCACTGTTATGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgctctgctcat Alignment from GeneWise --------------------------------------------------CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT GGCAGGGTCTCTCAATGCTGTTTCATACATTTTTTTTCCTTCTCAAAAAGCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTCACTGTTATGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgctctgctcat #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGC-CCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCCAACA-TTCCTGGCTCTTCCACTGCAGGATTGTCtgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCCAACATTCCTGGCTCTTCCACTGCAGGATTGTCtgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCCAACATTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Spaln_nt2Genome ATGGAACGCAG-CCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCCAACAT-TCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Pairagon ATGGAACGCAG-CCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCCAACAT-TCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCCAACATTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Exonerate_coding2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCCAACATTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCCAACATTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGT-GGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgacccacttccaatttaccttagctgttctccttgcttctctagctGTTTCTCAGCCTAGTCGGAGCAG-AACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgacccacttccaatttaccttagctgttctccttgcttctctagctGTTTCTCAGCCTAGTCGGAGCAGAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTCGGAGCAGAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGT-GGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTCGGAGCAG-AACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Pairagon CCGTTTCTCGGCCTAGT-GGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTCGGAGCAG-AACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTCGGAGCAGAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTCGGAGCAGAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTCGGAGCAGAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCC-CCACCAATTCCTGAAGCAGAAAAGCCTCCTg gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacaggCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCCGATTC-TGAAGCAGAAAAGCCTCCTggtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacaggCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCCGATTCTGAAGCAGAAAAGCCTCCTggtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCCGATTCTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCCGATTCTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCCGATTCTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCCGATTCTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCCGATTCTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCCGATTCTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta #### Taf5_ID10097_5 --> 1 - 0 Original Alignment aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagaATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGG-GCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from CESAR aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagaATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Spaln_aa2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Spaln_nt2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Pairagon AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGG-GCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Exonerate_protein2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Exonerate_coding2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from GeneWise AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGA-TTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGCTTCCTAG-TACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGCTTCCTAGTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGCTTCCTAGTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGCTTCCTAGTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Pairagon GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGCTTCCTAGTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGCTTCCTAGTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGCTTCCTAGTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGCTTCCTAGTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTC-TACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTCTACCTCC-AGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTCTACCTCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTCTACCTCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTCTACCTCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGG-TCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTCTACCTCCA-GGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTCTACCTCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTCTACCTCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTCTACCTCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAG-TTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtgagcaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGCTTTCCTT-GCATGAGATGTTTGTCTTGCCTCAAGGACATgggtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from CESAR TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtgagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGCTTTCCTTGCATGAGATGTTTGTCTTGCCTCAAGGACATgggtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Spaln_aa2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgagcaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGCTTTCCTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Spaln_nt2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgagcaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGCTTTCCTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Pairagon TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgagcaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGCTTTCCTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Exonerate_protein2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgagcaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGCTTTCCTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Exonerate_coding2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgagcaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGCTTTCCTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from GeneWise TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtgagcaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGCTTTCCTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCC-CGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCCGGATGT-TCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccgtgaccttcttcttcattgcagGAACTG Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCCGGATGTTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgccctattatcgctttgctgccctagGAACTG Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCCGGATGTTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccgtgaccttcttcttcattgcagGAACTG Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCCGGATGTTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccgtgaccttcttcttcattgcagGAACTG Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGG-GGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCCGGATGT-TCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccgtgaccttcttcttcattgcagGAACTG Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCCGGATGTTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccgtgaccttcttcttcattgcagGAACTG Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCCGGATGTTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccgtgaccttcttcttcattgcagGAACTG Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCCGGATGTTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccgtgaccttcttcttcattgcagGAACTG #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGG-GCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagagCTGTCTGAAGTCCTTTGGCGCAATGGTGA-GCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtatgaatctatttagtgggatttggcagggaccatgggttgattatccc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagagCTGTCTGAAGTCCTTTGGCGCAATGGTGAGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtatgaatctatttagtgggatttggcagggaccatgggttgatttcttc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGCGCAATGGTGAGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattatccc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGG-GCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGCGCAATGGTGA-GCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattatccc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGG-GCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGCGCAATGGTGA-GCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattatccc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGCGCAATGGTGAGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattatccc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGGGTGGAGTTCCAGAACAAGTTCTATTCAGGCACCGGCTACAAGCTCAGCC gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGCGCAATGGTGAGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGGTATGAATCTATTTAGTGGGATTTGGCAGGGACCATGGGTTGATTATCCC Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGCGCAATGGTGAGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattatccc #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGAT-GAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAACAGTTGGAGCCCTGATCGAGGAGGTAG-TGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAACAGTTGGAGCCCTGATCGAGGAGGTAGTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAACAGTTGGAGCCCTGATCGAGGAGGTAGTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGAT-GAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAACAGTTGGAGCCCTGATCGAGGAGGTAG-TGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGAT-GAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAACAGTTGGAGCCCTGATCGAGGAGGTAG-TGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAACAGTTGGAGCCCTGATCGAGGAGGTAGTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAACAGTTGGAGCCCTGATCGAGGAGGTAGTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAACAGTTGGAGCCCTGATCGAGGAGGTAGTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCAC-TTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcaatacccttttctcctttcatgtaggCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGTTCCTGATCGTCTACAAATGGGTGAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACCTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgggtgaccccgtcaccagggttgttctaatgtcttgtatca Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCAC-TTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcaatacccttttctcctttcatgtaggCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGTTCCTGATCGTCTACAAATGGGTGAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACCTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgggtgaccccgtcaccagggttgttctaatgtcttgtatca Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCAC-TTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcaatacccttttctcctttcatgtagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGTTCCTGATCGTCTACAAATGGGTGAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACcTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgggtgaccccgtcaccagggttgttctaatgtcttgtatca Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcaatacccttttctcctttcatgtagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTCTAT------CTGGTGTTCCTGATCGTCTACAAATGGGTGAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCATTATCCAC-----CTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtgagaagtgggtgaccccgtcaccagggttgttctaatgtcttgtatca Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcaatacccttttctcctttcatgtagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTATCTGGTGTTCCTGATCGTCTACAAATGGGTGAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCATTATCCAC-----CTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtgagaagtgggtgaccccgtcaccagggttgttctaatgtcttgtatca Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCAC-TTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcaatacccttttctcctttcatgtagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGTTCCTGATCGTCTACAAATGGGTGAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACCTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgggtgaccccgtcaccagggttgttctaatgtcttgtatca Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCAC-TTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcaatacccttttctcctttcatgtagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGTTCCTGATCGTCTACAAATGGGTGAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACCTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgggtgaccccgtcaccagggttgttctaatgtcttgtatca Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCAC-TTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctggtgtgagcaatacccttttctcctttcatgtagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGTTCCTGATCGTCTACAAATGGGTGAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACCTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgggtgaccccgtcaccagggttgttctaatgtcttgtatca #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTG-AGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGCAGCT-TCTCAACTCTTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTTGGGGTTTTCCTCAGCATCTTCAATCAGgtgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGCAGCTTCTCAACTCTTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTTGGGGTTTTCCTCAGCATCTTCAATCAGgtgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGCAGCTTCTCAACTCTTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGCAGCTTCTCAACTCTTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGCAGCTTCTCAACTCTTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGCAGCTTCTCAACTCTTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGCAGCTTCTCAACTCTTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGCAGCTTCTCAACTCTTTCAAGATGAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCC-CAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttatctgatgtgaagcatagcttaaacccccccgtttctgttgcagcGAGGAGTATCTATCCCCAGCACT-AATGCTAACCTTGAACCCTAACATAACTGGAGTCTTTCTCGGGCCATACCCCTTTGGCATTGAGCCTgtaagtgagcatgcaagtgcaaggtaaacagatgcatgggaaggcagtca Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttatctgatgtgaagcatagcttaaacccccccgtttctgttgcagcGAGGAGTATCTATCCCCAGCACTAATGCTAACCTTGAACCCTAACATAACTGGAGTCTTTCTCGGGCCATACCCCTTTGGCATTGAGCCTgtaagtgagcatgcaagtgcaaggtaaacagatgcatgggaaggcagtca Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttatctgatgtgaagcatagcttaaacccccccgtttctgttgcagCGAGGAGTATCTATCCCCAGCACTAATGCTAACCTTGAACCCTAACATAACTGGAGTCTTTCTCGGGCCATACCCCTTTGGCATTGAGCCTgtaagtgagcatgcaagtgcaaggtaaacagatgcatgggaaggcagtca Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCC-AGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttatctgatgtgaagcatagcttaaacccccccgtttctgttgcagCGAGGAGTATCTATCCCCAGCACT-AATGCTAACCTTGAACCCTAACATAACTGGAGTCTTTCTCGGGCCATACCCCTTTGGCATTGAGCCTgtaagtgagcatgcaagtgcaaggtaaacagatgcatgggaaggcagtca Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTGT-CCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG CAGGTTATCTGATGTGAAGCATAGCTTAAACCCCCCCGTTTCTGTTGCAGCGAGGAGTATCTATCCCCAGCACT-AATGCTAACCTTGAACCCTAACATAACTGGAGTCTTTCTCGGGCCATACCCCTTTGGCATTGAGCCTgtaagtgagcatgcaagtgcaaggtaaacagatgcatgggaaggcagtca Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttatctgatgtgaagcatagcttaaacccccccgtttctgttgcagCGAGGAGTATCTATCCCCAGCACTAATGCTAACCTTGAACCCTAACATAACTGGAGTCTTTCTCGGGCCATACCCCTTTGGCATTGAGCCTgtaagtgagcatgcaagtgcaaggtaaacagatgcatgggaaggcagtca Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttatctgatgtgaagcatagcttaaacccccccgtttctgttgcagCGAGGAGTATCTATCCCCAGCACTAATGCTAACCTTGAACCCTAACATAACTGGAGTCTTTCTCGGGCCATACCCCTTTGGCATTGAGCCTgtaagtgagcatgcaagtgcaaggtaaacagatgcatgggaaggcagtca Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttatctgatgtgaagcatagcttaaacccccccgtttctgttgcagCGAGGAGTATCTATCCCCAGCACTAATGCTAACCTTGAACCCTAACATAACTGGAGTCTTTCTCGGGCCATACCCCTTTGGCATTGAGCCTgtaagtgagcatgcaagtgcaaggtaaacagatgcatgggaaggcagtca #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGG-AGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGCAGTGTGGCAG-TATGGCCAACCAATCCGGCTGGctgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGCAGTGTGGCAGTATGGCCAACCAATCCGGCTGGctgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGCAGTGTGGCAGTATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGG-AGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGCAGTGTGGCAG-TATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGG-AGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGCAGTGTGGCAG-TATGGCCAACCAATCCGGCTGGCTGTAAGACTATGATGGTTGGTTCATGTCCAGGTTATCTGATGTGAAGCATA Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGCAGTGTGGCAGTATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGCAGTGTGGCAGTATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGCAGTGTGGCAGTATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTCTTCCCATACCTGGAGCAG-GAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccataatcctgggcttcaatacaagacttgggccatgacctaacacagcTTTCACTGCCATGTCTTCTCATATCTAGAACAGCGAGGAAG-CCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGCCAGGAACTTCAAGAGgtgtggtcctaagggatctgaaggactatctcacctctctttcagGTCTT Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccataatcctgggcttcaatacaagacttgggccatgacctaacacagcTTTCACTGCCATGTCTTCTCATATCTAGAACAGCGAGGAAGCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGCCAGGAACTTCAAGAGgtgtggtcctaagggatctgaagtccctcctcttcatcctcacagGTCTT Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccataatcctgggcttcaatacaagacttgggccatgacctaacacagCTTTCACTGCCATGTCTTCTCATATCTAGAACAGCGAGGAAGCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGCCAGGAACTTCAAGAGgtgtggtcctaagggatctgaaggactatctcacctctctttcagGTCTT Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAG-GAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccataatcctgggcttcaatacaagacttgggccatgacctaacacagCTTTCACTGCCATGTCTTCTCATATCTAGAACAGCGAGGAAG-CCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGCCAGGAACTTCAAGAGgtgtggtcctaagggatctgaaggactatctcacctctctttcagGTCTT Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTGGAGCAG-GAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccataatcctgggcttcaatacaagacttgggccatgacctaacacagCTTTCACTGCCATGTCTTCTCATATCTAGAACAGCGAGGAAG-CCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGCCAGGAACTTCAAGAGgtgtggtcctaagggatctgaaggactatctcacctctctttcagGTCTT Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccataatcctgggcttcaatacaagacttgggccatgacctaacacagCTTTCACTGCCATGTCTTCTCATATCTAGAACAGCGAGGAAGCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGCCAGGAACTTCAAGAGgtgtggtcctaagggatctgaaggactatctcacctctctttcagGTCTT Alignment from Exonerate_coding2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccataatcctgggcttcaatacaagacttgggccatgacctaacacagCTTTCACTGCCATGTCTTCTCATATCTAGAACAGCGAGGAAGCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGCCAGGAACTTCAAGAGgtgtggtcctaagggatctgaaggactatctcacctctctttcagGTCTT Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccataatcctgggcttcaatacaagacttgggccatgacctaacacagCTTTCACTGCCATGTCTTCTCATATCTAGAACAGCGAGGAAGCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGCCAGGAACTTCAAGAGgtgtggtcctaagggatctgaaggactatctcacctctctttcagGTCTT #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CAGTGACG GGTGAGCCTGCAACTTGGATGACC-TTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CAGTGGCAgtaagagtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCCTTTATCA-ATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATtggtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from CESAR CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CAGTGGCAgtgagtgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATtggtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Spaln_aa2Genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaagagtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Spaln_nt2Genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaagagtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Pairagon CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaagagtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Exonerate_protein2genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaagagtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Exonerate_coding2genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaagagtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from GeneWise CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaagagtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCA-CCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagccTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCCTG-GGGGACACTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagccTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCCTGGGGGACACTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCCTGGGGGACACTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCCTGGGGGACACTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCCTGGGGGACACTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCCTGGGGGACACTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCCTGGGGGACACTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCCTGGGGGACACTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGC-TGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttaggaTTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCCTGCACCTCTG-GCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttaggaTTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCCTGCACCTCTGGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCCTGCACCTCTGGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCCTGCACCTCTGGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAG-CTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCCTGCACCTCTG-GCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCCTGCACCTCTGGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCCTGCACCTCTGGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCCTGCACCTCTGGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCA-GACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCACGACA-ATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCagtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCACGACAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCagtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCACGACAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCACGACAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCACGACAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCACGACAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCACGACAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCACGACAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTCCGAGGGGCCAAC-TCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg taggcttggagttttaaccctccttctcgcatctgtcctctctccctcagttATTGGTTATTATATCTTCCGAGGGGCGAACCTCTG-GAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCGGCAggcaaactgagtcggtcaggtcttatgcctaattgaacctgagggcttcga Alignment from CESAR ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg taggcttggagttttaaccctccttctcgcatctgtcctctctccctcagttATTGGTTATTATATCTTCCGAGGGGCGAACCTCTGGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCGGCAggcaaactgagtcggtcaggtcttatgcctaattgaacctgagggcttcga Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggagttttaaccctccttctcgcatctgtcctctctccctcagTTATTGGTTATTATATCTTCCGAGGGGCGAACCTCTGGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCGGCAGgcaaactgagtcggtcaggtcttatgcctaattgaacctgagggcttcga Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggagttttaaccctccttctcgcatctgtcctctctccctcagTTATTGGTTATTATATCTTCCGAGGGGCGAACCTCTGGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCGGCAGgcaaactgagtcggtcaggtcttatgcctaattgaacctgagggcttcga Alignment from Pairagon TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggagttttaaccctccttctcgcatctgtcctctctccctcagTTATTGGTTATTATATCTTCCGAGGGGCGAACCTCTGGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCGGCAGgcaaactgagtcggtcaggtcttatgcctaattgaacctgagggcttcga Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggagttttaaccctccttctcgcatctgtcctctctccctcagTTATTGGTTATTATATCTTCCGAGGGGCGAACCTCTGGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCGGCAGgcaaactgagtcggtcaggtcttatgcctaattgaacctgagggcttcga Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggagttttaaccctccttctcgcatctgtcctctctccctcagTTATTGGTTATTATATCTTCCGAGGGGCGAACCTCTGGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCGGCAGgcaaactgagtcggtcaggtcttatgcctaattgaacctgagggcttcga Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTGGT---CTTG taggcttggagttttaaccctccttctcgcatctgtcctctctccctcagTTATTGGTTATTATATCTTCCGAGGGGCGAACCTCTGGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCGGCAGGCAAACTGAgtcggtcaggtcttatgcctaattgaacctgagggcttcga #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTC-ACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCCACCA-GTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCCACCAGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCCACCAGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCCACCAGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCCACCAGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCCACCAGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCCACCAGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCCACCAGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTC-GGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTCGGTCTGC-GGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTCGGTCTGCGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTCGGTCTGCGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTCGGTCTGCGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGC-TCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTCGGTCTGC-GGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTCGGTCTGCGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTCGGTCTGCGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTCGGTCTGCGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg tgcggtaaagcacctcatcttctagaacctttcgtctctcttgtttgcaggACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTCAAGATTG-CCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATggtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from CESAR gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg taaagtaaagcacctcatcttctagaacctttcgtctctcttgtttgcaggACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTCAAGATTGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATggtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgcggtaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTCAAGATTGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgcggtaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTCAAGATTGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Pairagon GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgcggtaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTCAAGATT-GCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgcggtaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTCAAGATTGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgcggtaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTCAAGATTGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from GeneWise ------------------------------------------------AGGACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG TGCGGTAAAGCACCTCATCTTCTAGAACCTTTCGTCTCTCTTGTTTGCAGGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTCAAGATTGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTC-AACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGAGT-AGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGAGTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGAGTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTT-CAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGAG-TAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAG-TTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGAG-TAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGAGTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Exonerate_coding2genome CAGGCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccaCAGGCAACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGAGTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTCAACCCAGAGTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg #### Trmt112_ID1862_3 --> 0 - 0 Original Alignment TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTT-TTGAGGAAGATGCACCACGTGTTGCTTGAG tctttctggtaattaaagtctgggtgttagtgacactctctctgctgtagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAAACATTTCTTGA-GGAGATGCGTCATGTGCTGCTTGAGgtaataaacctggaccatcatgcccaggtgtctatagtcgttactagcct Alignment from CESAR TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG tctttctggtaattaaagtctgggtgttagtgacactctctctgctgtagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAAACATTTCTTGAGGAGATGCGTCATGTGCTGCTTGAGgtaataaacctggaccatcatgcccaggtgtctatagtcgttactagcct Alignment from Spaln_aa2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG tctttctggtaattaaagtctgggtgttagtgacactctctctgctgtagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAAACATTTCTTGAGGAGATGCGTCATGTGCTGCTTGAGgtaataaacctggaccatcatgcccaggtgtctatagtcgttactagcct Alignment from Spaln_nt2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTT-TTGAGGAAGATGCACCACGTGTTGCTTGAG tctttctggtaattaaagtctgggtgttagtgacactctctctgctgtagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAAACATTTCTTGAGG-AGATGCGTCATGTGCTGCTTGAGgtaataaacctggaccatcatgcccaggtgtctatagtcgttactagcct Alignment from Pairagon TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG tctttctggtaattaaagtctgggtgttagtgacactctctctgctgtagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAAACATTTCTTGAGGAGATGCGTCATGTGCTGCTTGAGgtaataaacctggaccatcatgcccaggtgtctatagtcgttactagcct Alignment from Exonerate_protein2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG tctttctggtaattaaagtctgggtgttagtgacactctctctgctgtagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAAACATTTCTTGAGGAGATGCGTCATGTGCTGCTTGAGgtaataaacctggaccatcatgcccaggtgtctatagtcgttactagcct Alignment from Exonerate_coding2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG tctttctggtaattaaagtctgggtgttagtgacactctctctgctgtagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAAACATTTCTTGAGGAGATGCGTCATGTGCTGCTTGAGgtaataaacctggaccatcatgcccaggtgtctatagtcgttactagcct Alignment from GeneWise TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG tctttctggtaattaaagtctgggtgttagtgacactctctctgctgtagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAAACATTTCTTGAGGAGATGCGTCATGTGCTGCTTGAGgtaataaacctggaccatcatgcccaggtgtctatagtcgttactagcct #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAA-CTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCCTGACCC-CCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTggtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCCTGACCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTggtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCCTGACCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGGTCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCCTGACCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGG---GTCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCC---AGACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCCTGACCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGG---GTCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCC---AGACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCCTGACCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCCTGACCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCCTGACCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc #### Trpt1_ID1983_6 --> 2 - 1 Original Alignment atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACT-CCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc agagaatgtgactatcatatgatcactcaaatgttcttttttctttcaagatGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCCAGGGA-TGTTGAAGGTTTCCTGCTTCCCAAGTACTCTAAGGAGGCTCTCCAGCTACGGCCTATGcgtaagtttataacctggcctgagctgacactctctataagtctgtgtgga Alignment from CESAR atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc agagaatgtgactatcatatgatcactcaaatgttcttttttctttcaagatGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCCAGGGATGTTGAAGGTTTCCTGCTTCCCAAGTACTCTAAGGAGGCTCTCCAGCTACGGCCTATGcgtaagtttataacctggcctgagctgacactctctataagtctgtgtgga Alignment from Spaln_aa2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcaaatgttcttttttctttcaagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCCAGGGATGTTGAAGGTTTCCTGCTTCCCAAGTACTCTAAGGAGGCTCTCCAGCTACGGCCTATGCgtaagtttataacctggcctgagctgacactctctataagtctgtgtgga Alignment from Spaln_nt2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcaaatgttcttttttctttcaagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCCAGGGATGTTGAAGGTTTCCTGCTTCCCAAGTACTCTAAGGAGGCTCTCCAGCTACGGCCTATGCgtaagtttataacctggcctgagctgacactctctataagtctgtgtgga Alignment from Pairagon ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcaaatgttcttttttctttcaagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCCAGGGATGTTGAAGGTTTCCTGCTTCCCAAGTACTCTAAGGAGGCTCTCCAGCTACGGCCTATGCgtaagtttataacctggcctgagctgacactctctataagtctgtgtgga Alignment from Exonerate_protein2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcaaatgttcttttttctttcaagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCCAGGGATGTTGAAGGTTTCCTGCTTCCCAAGTACTCTAAGGAGGCTCTCCAGCTACGGCCTATGCgtaagtttataacctggcctgagctgacactctctataagtctgtgtgga Alignment from Exonerate_coding2genome TCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAGATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC AGAGAATGTGACTATCATATGATCACTCAAATGTTCTTTTTTCTTTCAAGATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCCAGGGATGTTGAAGGTTTCCTGCTTCCCAAGTACTCTAAGGAGGCTCTCCAGCTACGGCCTATGCgtaagtttataacctggcctgagctgacactctctataagtctgtgtgga Alignment from GeneWise ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC agagaatgtgactatcatatgatcactcaaatgttcttttttctttcaagATGGAATTCCTTTC---TGCTTTGCCAATGGGGTGATTCTGACTCCCAGGGATGTTGAAGGTTTCCTGCTTCCCAAGTACTCTAAGGAGGCTCTCCAGCTACGGCCTATGCgtaagtttataacctggcctgagctgacactctctataagtctgtgtgga #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGG-GTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGCGTAGATG-TGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGCGTAGATGTGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGCGTAGATGTGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Spaln_nt2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGCGTAGATGTGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGG-GTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGCGTAGATG-TGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGCGTAGATGTGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGCGTAGATGTGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGCGTAGATGTGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc #### Tut1_ID2551_4 --> 2 - 0 Original Alignment gcTGTGTGGTCCATCCTTTTGGC-TCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacaggcTGTGTGGTCCATCCTTTTGGACTCTACTG-GAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from CESAR gcTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacaggcTGTGTGGTCCATCCTTTTGGACTCTACTGGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Spaln_aa2Genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGACTCTACTGGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Spaln_nt2Genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGACTCTACTGGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Pairagon GCTGTGTGGTCCATCCTTTTGG-CTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGACTCTACTG-GAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Exonerate_protein2genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGACTCTACTGGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Exonerate_coding2genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGACTCTACTGGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from GeneWise GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGACTCTACTGGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca #### Tut1_ID2554_7 --> 2 - 1 Original Alignment gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTC-CTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg acacaaagacttggtcttgtaattagctatagctgcgtgtcctctctcaggaGGTGGCCCACTACTCAACAACTAT---GTAACCTTGTTGGTGATCTACCTGCCTTCAGA-TAGAGACCCTCCAGTGCTACCTAGTGTGGCCCAGCTAACCCAAAGGGCAggtgagtaatggcctctacactctggatcccagctacactctggcaatgcc Alignment from CESAR gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg acacaaagacttggtcttgtaattagctatagctgcgtgtcctctctcaggaGGTGGCCCACTACTCAACAACTAT---GTAACCTTGTTGGTGATCTACCTGCCTTCAGATAGAGACCCTCCAGTGCTACCTAGTGTGGCCCAGCTAACCCAAAGGGCAggtgagtaatggcctctacactctggatcccagctacactctggcaatgcc Alignment from Spaln_aa2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctatagctgcgtgtcctctctcagGAGGTGGCCCACTACTCAACAACTAT---GTAACCTTGTTGGTGATCTACCTGCCTTCAGATAGAGACCCTCCAGTGCTACCTAGTGTGGCCCAGCTAACCCAAAGGGCAGgtgagtaatggcctctacactctggatcccagctacactctggcaatgcc Alignment from Spaln_nt2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctatagctgcgtgtcctctctcagGAGGTGGCCCACTACTCAACAACTATG---TAACCTTGTTGGTGATCTACCTGCCTTCAGATAGAGACCCTCCAGTGCTACCTAGTGTGGCCCAGCTAACCCAAAGGGCAGgtgagtaatggcctctacactctggatcccagctacactctggcaatgcc Alignment from Pairagon GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTT-CCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctatagctgcgtgtcctctctcagGAGGTGGCCCACTACTCAACAACTATG---TAACCTTGTTGGTGATCTACCTGCCTTCAGA-TAGAGACCCTCCAGTGCTACCTAGTGTGGCCCAGCTAACCCAAAGGGCAGgtgagtaatggcctctacactctggatcccagctacactctggcaatgcc Alignment from Exonerate_protein2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctatagctgcgtgtcctctctcagGAGGTGGCCCACTACTCAACAACTAT---GTAACCTTGTTGGTGATCTACCTGCCTTCAGATAGAGACCCTCCAGTGCTACCTAGTGTGGCCCAGCTAACCCAAAGGGCAGgtgagtaatggcctctacactctggatcccagctacactctggcaatgcc Alignment from Exonerate_coding2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctatagctgcgtgtcctctctcagGAGGTGGCCCACTACTCAACAACTAT---GTAACCTTGTTGGTGATCTACCTGCCTTCAGATAGAGACCCTCCAGTGCTACCTAGTGTGGCCCAGCTAACCCAAAGGGCAGgtgagtaatggcctctacactctggatcccagctacactctggcaatgcc Alignment from GeneWise GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctatagctgcgtgtcctctctcagGAGGTGGCCCACTACTCAACAACTAT---GTAACCTTGTTGGTGATCTACCTGCCTTCAGATAGAGACCCTCCAGTGCTACCTAGTGTGGCCCAGCTAACCCAAAGGGCAGgtgagtaatggcctctacactctggatcccagctacactctggcaatgcc #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTC-AGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacaggCTGATGGAGCATGAAGATGAACCTGATGTGGATGAGCCTCTGGAGACTTCCCTCCAGCCATGTTT-GGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAggtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacaggCTGATGGAGCATGAAGATGAACCTGATGTGGATGAGCCTCTGGAGACTTCCCTCCAGCCATGTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAggtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATGAGCCTCTGGAGACTTCCCTCCAGCCATGTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTC-AGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATGAGCCTCTGGAGACTTCCCTCCAGCCATGT-TTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCT-CAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATGAGCCTCTGGAGACTTCCCTCCAGCCATGT-TTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATGAGCCTCTGGAGACTTCCCTCCAGCCATGTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATGAGCCTCTGGAGACTTCCCTCCAGCCATGTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATGAGCCTCTGGAGACTTCCCTCCAGCCATGTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTG-CAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagtgGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCCAGCGCT-TAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagtgGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCCAGCGCTTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCCAGCGCTTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGC-AGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCCAGCGCT-TAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTG---TGTGACTGTG-CAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCCAGCGCT-TAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCCAGCGCTTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCCAGCGCTTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCCAGCGCTTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat #### Vldlr_ID5807_6 --> 2 - 1 Original Alignment ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGC-AATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cagaagtgggcacttgactgcttgtttccctctggtgtgtgccttctcagccTCTCAAACCTGCAGACCCGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCCAATG-CATCCAGGCTTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACagtgaatgtctctttttgattgttgggtctgcacctttgccagaagagtga Alignment from CESAR ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cagaagtgggcacttgactgcttgtttccctctggtgtgtgccttctcagccTCTCAAACCTGCAGACCCGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCCAATGCATCCAGGCTTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACagtgaatgtctctttttgattgttgggtctgcacctttgccagaagagtga Alignment from Spaln_aa2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgactgcttgtttccctctggtgtgtgccttctcagCCTCTCAAACCTGCAGACCCGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCCAATGCATCCAGGCTTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtgaatgtctctttttgattgttgggtctgcacctttgccagaagagtga Alignment from Spaln_nt2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgactgcttgtttccctctggtgtgtgccttctcagCCTCTCAAACCTGCAGACCCGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCCAATGCATCCAGGCTTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtgaatgtctctttttgattgttgggtctgcacctttgccagaagagtga Alignment from Pairagon CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgactgcttgtttccctctggtgtgtgccttctcagCCTCTCAAACCTGCAGACCCGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCCAATGCATCCAGGCTTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtgaatgtctctttttgattgttgggtctgcacctttgccagaagagtga Alignment from Exonerate_protein2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgactgcttgtttccctctggtgtgtgccttctcagCCTCTCAAACCTGCAGACCCGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCCAATGCATCCAGGCTTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtgaatgtctctttttgattgttgggtctgcacctttgccagaagagtga Alignment from Exonerate_coding2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgactgcttgtttccctctggtgtgtgccttctcagCCTCTCAAACCTGCAGACCCGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCCAATGCATCCAGGCTTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtgaatgtctctttttgattgttgggtctgcacctttgccagaagagtga Alignment from GeneWise CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgactgcttgtttccctctggtgtgtgccttctcagCCTCTCAAACCTGCAGACCCGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCCAATGCATCCAGGCTTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtgaatgtctctttttgattgttgggtctgcacctttgccagaagagtga #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTG-GACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagacCTGGTCAAAAGCCGTCTCTATTGGTTGGATGCCAAGTTACACATGCTCTCTAGTGTTCGACCTGA-TGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from CESAR acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagacCTGGTCAAAAGCCGTCTCTATTGGTTGGATGCCAAGTTACACATGCTCTCTAGTGTTCGACCTGATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Spaln_aa2Genome CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcataagtgtggggagaaagaagctcatttgttcttcctcggcaca gACCTGGTCAAAAGCCGTCTCTATTGGTTGGATGCCAAGTTACACATGCTCTCTAGTGTTCGACCTGATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCTCTATTGGTTGGATGCCAAGTTACACATGCTCTCTAGTGTTCGACCTGATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Pairagon ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTG-TGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCTCTATTGGTTGGATGCCAAGTTACACATGCTCTCTAGTGTTCGACCTG-ATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Exonerate_protein2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCTCTATTGGTTGGATGCCAAGTTACACATGCTCTCTAGTGTTCGACCTGATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Exonerate_coding2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCTCTATTGGTTGGATGCCAAGTTACACATGCTCTCTAGTGTTCGACCTGATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from GeneWise --------------------CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagCTCATTTGTTCTTCCTCGGCACAGACCTGGTCAAAAGCCGTCTCTATTGGTTGGATGCCAAGTTACACATGCTCTCTAGTGTTCGACCTGATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc #### Vps13a_ID4057_66 --> 0 - 1 Original Alignment GGTTTTGTAAGT-GGCATTACAGGGATTGTTACAAAGCCAATTAAAg aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTCGGTA-TACCGGCATTGTTTCAGAGCCAATAAAAggtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from CESAR GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAg aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTCGGTATACCGGCATTGTTTCAGAGCCAATAAAAggtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from Spaln_aa2Genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTCGGTATACCGGCATTGTTTCAGAGCCAATAAAAGgtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from Spaln_nt2Genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTCGGTATACCGGCATTGTTTCAGAGCCAATAAAAGgtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from Pairagon GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAGGTG----------------------------------------------- aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTCGGTATACCGGCATTGTTTCAGAGCCAATAAAAGGTATCTATCACCTTGCCTGGTATATATTTCACATGTGTCATTCTCATTTG Alignment from Exonerate_protein2genome GGTTTTGTAAGTGGCA aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagggttttgtaagtcggtataccggcattgtttcagagccaataaaaggtatctatcaccttgcctggtatatatttcacatGTGTCATTCTCATTTG Alignment from Exonerate_coding2genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTCGGTATACCGGCATTGTTTCAGAGCCAATAAAAGgtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from GeneWise GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTCGGTATACCGGCATTGTTTCAGAGCCAATAAAAGgtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg #### Vps13a_ID4074_49 --> 0 - 0 Original Alignment GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGA-GCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGACGCCA-TAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from CESAR GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGACGCCATAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Spaln_aa2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGACGCCATAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Spaln_nt2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGACGCCATAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Pairagon GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGACGCCATAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Exonerate_protein2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGACGCCATAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Exonerate_coding2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGACGCCATAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from GeneWise GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGACGCCATAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGT-CTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttatctgttagtaaatctcctgataccaactgtttctctttctttccagctTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAA-TCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAggtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttatctgttagtaaatctcctgataccaactgtttctctttctttccagctTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAggtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAA--------------------------------------------------- gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGGTGAACATATCTATTTCCTGTATTTAGGATTAACTAAATTCATAAGGCAG #### Vps13a_ID4109_14 --> 0 - 0 Original Alignment GAGTTGGAGAAAACTTTGGAT-GTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATCGTTTTGA-TATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from CESAR GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATCGTTTTGATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Spaln_aa2Genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATCGTTTTGATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Spaln_nt2Genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATCGTTTTGATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Pairagon GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATCGTTTTGATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Exonerate_protein2genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATCGTTTTGATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Exonerate_coding2genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATCGTTTTGATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from GeneWise GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATCGTTTTGATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGAT-GAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagacTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATGATCGAGCCCT-TACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagacTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATGATCGAGCCCTTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATGATCGAGCCCTTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATGATCGAGCCCTTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGAT-GAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATGATCGAGCCCT-TACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATGATCGAGCCCTTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATGATCGAGCCCTTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg #### Wdr74_ID2314_4 --> 1 - 0 Original Alignment cACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGAC-AAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagaACTCTTATTACATGTGTAGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATCAAAGAGG-ATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from CESAR cACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagaACTCTTATTACATGTGTAGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATCAAAGAGGATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Spaln_aa2Genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTAGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATCAAAGAGGATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Spaln_nt2Genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGA-CAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTAGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATCAAAGAGG-ATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Pairagon CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGA-CAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTAGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATCAAAGAGG-ATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Exonerate_protein2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTAGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATCAAAGAGGATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Exonerate_coding2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTAGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATCAAAGAGGATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from GeneWise CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTAGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATCAAAGAGGATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAGCTG-GCAGAAATTGATTTTCGGCAAg aaatgggatccaggattcacactgatccgagtgttatccttcttttccagtTCTGTCATTGTAGGGAACACTCATGGGCAACTGCGCAGAAA-TGACTTTCGGCAAggtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg aaatgggatccaggattcacactgatccgagtgttatccttcttttccagtTCTGTCATTGTAGGGAACACTCATGGGCAACTGCGCAGAAATGACTTTCGGCAAggtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGCGCAGAAATGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGCGCAGAAATGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAGCTG-GCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGCGCAGAAA-TGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGCGCAGAAATGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGCGCAGAAATGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAGGGCG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGCGCAGAAATGACTTTCGGCAAGGTAAgtgcaccatagacttcttgagaaggaaagtagggggtactactgac #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGT-CTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcaggcAGACTAGTTGGCTGTCCTGAAGG-CCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcaggcAGACTAGTTGGCTGTCCTGAAGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCCTGAAGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCCTGAAGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCCTGAAGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCCTGAAGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCCTGAAGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCCTGAAGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct #### Yif1a_ID831_3 --> 0 - 0 Original Alignment AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTAT-GTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATAGTGCACAAAGAGgtgaggtgccactctgcttctctctgccagCTACACCGTTTTGTGTCTGTAAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACCGTTG-TAAAAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaattccgtctggagtgtgggccccctacatgtgaatagcctgtctgat Alignment from CESAR AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATAGTGCACAAAGAGgtagcctgccactctgcttctctctgccagCTACACCGTTTTGTGTCTGTAAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACCGTTGTAAAAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaattccgtctggagtgtgggccccctacatgtgaatagcctgtctgat Alignment from Spaln_aa2Genome AGGACATAGTGCACAAAGAG------------------------------CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATAGTGCACAAAGAGGTGAGGTGCCACTCTGCTTCTCTCTGCCAGCTACACCGTTTTGTGTCTGTAAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACCGTTGTAAAAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaattccgtctggagtgtgggccccctacatgtgaatagcctgtctgat Alignment from Spaln_nt2Genome AGGACATAGTGCACAAAG------------------------------AGCTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATAGTGCACAAAGAGGTGAGGTGCCACTCTGCTTCTCTCTGCCAGCTACACCGTTTTGTGTCTGTAAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACCGTTGTAAAAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaattccgtctggagtgtgggccccctacatgtgaatagcctgtctgat Alignment from Pairagon AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATAGTGCACAAAGAGgtgaggtgccactctgcttctctctgccagCTACACCGTTTTGTGTCTGTAAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACCGTTGTAAAAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaattccgtctggagtgtgggccccctacatgtgaatagcctgtctgat Alignment from Exonerate_protein2genome AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATAGTGCACAAAGAGgtgaggtgccactctgcttctctctgccagCTACACCGTTTTGTGTCTGTAAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACCGTTGTAAAAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaattccgtctggagtgtgggccccctacatgtgaatagcctgtctgat Alignment from Exonerate_coding2genome AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATAGTGCACAAAGAGgtgaggtgccactctgcttctctctgccagCTACACCGTTTTGTGTCTGTAAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACCGTTGTAAAAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaattccgtctggagtgtgggccccctacatgtgaatagcctgtctgat Alignment from GeneWise AGGACATAGTGCACAAAGAG------------------------------CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATAGTGCACAAAGAGGTGAGGTGCCACTCTGCTTCTCTCTGCCAGCTACACCGTTTTGTGTCTGTAAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACCGTTGTAAAAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaattccgtctggagtgtgggccccctacatgtgaatagcctgtctgat #### Yif1a_ID833_5 --> 2 - 2 Original Alignment ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATG-GCGCTAGGCATTCAGCAAag gtggggggatgcactgggtatttccattgaacatctcacatccgcttcagccATGGCCTTTGTCACAGATGTACTAAGGGCTGGGATGCGCAT-AGGCATTCAGCAAaggtaagaatccagcagatcttacttgttattcttgtcatgcctggtgtagt Alignment from CESAR ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag gtggggggatgcactgggtatttccattgaacatctcacatccgcttcagccATGGCCTTTGTCACAGATGTACTAAGGGCTGGGATGCGCATAGGCATTCAGCAAaggtaagaatccagcagatcttacttgttattcttgtcatgcctggtgtagt Alignment from Spaln_aa2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatgcactgggtatttccattgaacatctcacatccgcttcagCCATGGCCTTTGTCACAGATGTACTAAGGGCTGGGATGCGCATAGGCATTCAGCAAAGgtaagaatccagcagatcttacttgttattcttgtcatgcctggtgtagt Alignment from Spaln_nt2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatgcactgggtatttccattgaacatctcacatccgcttcagCCATGGCCTTTGTCACAGATGTACTAAGGGCTGGGATGCGCATAGGCATTCAGCAAAGgtaagaatccagcagatcttacttgttattcttgtcatgcctggtgtagt Alignment from Pairagon CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatgcactgggtatttccattgaacatctcacatccgcttcagCCATGGCCTTTGTCACAGATGTACTAAGGGCTGGGATGCGCATAGGCATTCAGCAAAGgtaagaatccagcagatcttacttgttattcttgtcatgcctggtgtagt Alignment from Exonerate_protein2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatgcactgggtatttccattgaacatctcacatccgcttcagCCATGGCCTTTGTCACAGATGTACTAAGGGCTGGGATGCGCATAGGCATTCAGCAAAGgtaagaatccagcagatcttacttgttattcttgtcatgcctggtgtagt Alignment from Exonerate_coding2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatgcactgggtatttccattgaacatctcacatccgcttcagCCATGGCCTTTGTCACAGATGTACTAAGGGCTGGGATGCGCATAGGCATTCAGCAAAGgtaagaatccagcagatcttacttgttattcttgtcatgcctggtgtagt Alignment from GeneWise CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatgcactgggtatttccattgaacatctcacatccgcttcagCCATGGCCTTTGTCACAGATGTACTAAGGGCTGGGATGCGCATAGGCATTCAGCAAAGgtaagaatccagcagatcttacttgttattcttgtcatgcctggtgtagt #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGAT-GGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacaggATGAATTTGAGCGTACTTACAGCGCTGCTCTTTGGCAGTGACCAGGTATT-TGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctgacaca Alignment from CESAR gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacaggATGAATTTGAGCGTACTTACAGCGCTGCTCTTTGGCAGTGACCAGGTATTTGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctaatact Alignment from Spaln_aa2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACTTACAGCGCTGCTCTTTGGCAGTGACCAGGTATTTGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctgacaca Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACTTACAGCGCTGCTCTTTGGCAGTGACCAGGTATTTGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctgacaca Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTAC---------GTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACTTACAGCGCTGCTCTTTGGCAGTG---------ACCAGGTATTTGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctgacaca Alignment from Exonerate_protein2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACTTACAGCGCTGCTCTTTGGCAGTGACCAGGTATTTGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctgacaca Alignment from Exonerate_coding2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACTTACAGCGCTGCTCTTTGGCAGTGACCAGGTATTTGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctgacaca Alignment from GeneWise GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACTTACAGCGCTGCTCTTTGGCAGTGACCAGGTATTTGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctgacaca #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGG-TCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTGGTCTCCA-TGTAGCCATTGCTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTGGTCTCCATGTAGCCATTGCTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTGGTCTCCATGTAGCCATTGCTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGG-TCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTGGTCTCCAT-GTAGCCATTGCTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTGGTCTCCATGTAGCCATTGCTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTGGTCTCCATGTAGCCATTGCTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTGGTCTCCATGTAGCCATTGCTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTGGTCTCCATGTAGCCATTGCTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGC-CGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCCGGT-ACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCCGGTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCCGGTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCCGGTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCCGGTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCCGGTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Exonerate_coding2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCCGGTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCCGGTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGG-ATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACGGAGGAGCCCCGGCATCCGGC-ACAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagtagaggggggggtgcttcatcgagaaactgacaatctctggtgct Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACGGAGGAGCCCCGGCATCCGGCACAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagtagaggggggggtgcttcatcgagaaactgacattaaattttctt Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACGGAGGAGCCCCGGCATCCGGCACAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaatctctggtgct Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACGGAGGAGCCCCGGCATCCGGCACAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaatctctggtgct Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGG-ATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACGGAGGAGCCCCGGCATCCGGC-ACAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaatctctggtgct Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACGGAGGAGCCCCGGCATCCGGCACAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaatctctggtgct Alignment from Exonerate_coding2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCT-TTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTG-CCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACGGAGGAGCCCCGGCATCCGGCACAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaatctctggtgct Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACGGAGGAGCCCCGGCATCCGGCACAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaatctctggtgct #### Zdhhc6_ID11622_7 --> 0 - 0 Original Alignment ATAGAACAGTTGAAGCAA-AAGGCAGACAAGAGAGTCAGAAGT aggctgctcagttacttgttgtctccctaaacctgttgcttctcctccagATAGAACAGCCAAAGCAACAAGG-GGACAAGAAAGTCAGAACTgtaaagtgtctaatagcagtgaatgctgagttctgcatgatacctaaggg Alignment from CESAR ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT aggctgctcagttacttgttgtctccctaaacctgttgcttctcctccagATAGAACAGCCAAAGCAACAAGGGGACAAGAAAGTCAGAACTgtaaagtgtctaatagcagtgaatgctgagttctgcatgatacctaaggg Alignment from Spaln_aa2Genome ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT aggctgctcagttacttgttgtctccctaaacctgttgcttctcctccagATAGAACAGCCAAAGCAACAAGGGGACAAGAAAGTCAGAACTgtaaagtgtctaatagcagtgaatgctgagttctgcatgatacctaaggg Alignment from Spaln_nt2Genome ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT aggctgctcagttacttgttgtctccctaaacctgttgcttctcctccagATAGAACAGCCAAAGCAACAAGGGGACAAGAAAGTCAGAACTgtaaagtgtctaatagcagtgaatgctgagttctgcatgatacctaaggg Alignment from Pairagon ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT aggctgctcagttacttgttgtctccctaaacctgttgcttctcctccagATAGAACAGCCAAAGCAACAAGGGGACAAGAAAGTCAGAACTgtaaagtgtctaatagcagtgaatgctgagttctgcatgatacctaaggg Alignment from Exonerate_protein2genome aggctgctcagttacttgttgtctccctaaacctgttgcttctcctccagatagaacagccaaagcaacaaggggacaagaaagtcagaactgtaaagtgtctaatagcagtgaatgctgagttctgcatgatacctaaggg Alignment from Exonerate_coding2genome aggctgctcagttacttgttgtctccctaaacctgttgcttctcctccagatagaacagccaaagcaacaaggggacaagaaagtcagaactgtaaagtgtctaatagcagtgaatgctgagttctgcatgatacctaaggg Alignment from GeneWise ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT aggctgctcagttacttgttgtctccctaaacctgttgcttctcctccagATAGAACAGCCAAAGCAACAAGGGGACAAGAAAGTCAGAACTgtaaagtgtctaatagcagtgaatgctgagttctgcatgatacctaaggg #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGT-TGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCCTGCTCATTCA-GGTACCCCGCTCCTCCATGGGCGCCACAggtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCCTGCTCATTCAGGTACCCCGCTCCTCCATGGGCGCCACAggtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCCTGCTCATTCAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGT-TGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCCTGCTCATTC-AGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTG-TTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCCTGCTCATTC-AGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCCTGCTCATTCAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCCTGCTCATTCAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCCTGCTCATTCAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac #### Zp1_ID3063_9 --> 1 - 0 Original Alignment gTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTC-ATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagaTGTCCTTTCAAGGGTGTCAATTATAGAACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCCATGCTTT-TGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from CESAR gTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagaTGTCCTTTCAAGGGTGTCAATTATAGAACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCCATGCTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Spaln_aa2Genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGAACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCCATGCTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Spaln_nt2Genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGAACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCCATGCTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Pairagon GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTC----------ATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGAACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCCATGCTTTTGATGCT----------AGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Exonerate_protein2genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGAACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCCATGCTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Exonerate_coding2genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGAACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCCATGCTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from GeneWise GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGAACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCCATGCTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGAC-TATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAACTACCCCCTTT-AAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCTGGCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATgcgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAACTACCCCCTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCTGGCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATgcgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAACTACCCCCTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCTGGCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAACTACCCCCTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTG---CTGGCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTG-ACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAACTACCCCCTT-TAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTG---CTGGCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAACTACCCCCTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCTGGCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAACTACCCCCTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCTGGCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAACTACCCCCTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCTGGCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGT-GTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTCGTAGACATAG-ACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAggtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTCGTAGACATAGACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAggtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTCGTAGACATAGACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGT-GTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTCGTAGACATAG-ACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGA---------GGCTGGGTCTGGACA------TATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGT-GTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTCGTAGACATAG-ACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGA---------GGCTGGGTCTGGACATA------TCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTCGTAGACATAGACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTCGTAGACATAGACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTCGTAGACATAGACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt ####