#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAAC-CTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG cctggaaactagactcagcctaacttgtgctgtgctttctttcgtaacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTACAAACCCTGC-GACCTGGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatccaacataccagatatgtgaacccacaagacacaggtagtgattg Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG cctggaaactagactcagcctaacttgtgctgtgctttctttcgtaacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTACAAACCCTGCGACCTGGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatccaacataccagatatgtgaacccacaagacacaggtagtgattg Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG cctggaaactagactcagcctaacttgtgctgtgctttctttcgtaacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTACAAACCCTGCGACCTGGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatccaacataccagatatgtgaacccacaagacacaggtagtgattg Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG cctggaaactagactcagcctaacttgtgctgtgctttctttcgtaacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTACAAACCCTGCGACCTGGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatccaacataccagatatgtgaacccacaagacacaggtagtgattg Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG cctggaaactagactcagcctaacttgtgctgtgctttctttcgtaacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTACAAACCCTGCGACCTGGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatccaacataccagatatgtgaacccacaagacacaggtagtgattg Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG cctggaaactagactcagcctaacttgtgctgtgctttctttcgtaacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTACAAACCCTGCGACCTGGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatccaacataccagatatgtgaacccacaagacacaggtagtgattg Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG cctggaaactagactcagcctaacttgtgctgtgctttctttcgtaacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTACAAACCCTGCGACCTGGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatccaacataccagatatgtgaacccacaagacacaggtagtgattg Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG cctggaaactagactcagcctaacttgtgctgtgctttctttcgtaacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTACAAACCCTGCGACCTGGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatccaacataccagatatgtgaacccacaagacacaggtagtgattg #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaaggaAACTGTGTGGTGCTGAAAAGATCTGAAATTAGCAGGAACCACAGAGAAGG-GTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaaggaAACTGTGTGGTGCTGAAAAGATCTGAAATTAGCAGGAACCACAGAGAAGGGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTGAAATTAGCAGGAACCACAGAGAAGGGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTGAAATTAGCAGGAACCACAGAGAAGG-GTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAA-CACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTGAAATTAGCAGGAACCACAGAGAAGG-GTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTGAAATTAGCAGGAACCACAGAGAAGGGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTGAAATTAGCAGGAACCACAGAGAAGGGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTGAAATTAGCAGGAACCACAGAGAAGGGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATCAGCCAGAACACTATC-CTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgtgttgttgtgcattaagaaagggggactcctcttttgcacttacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAAT-TGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtatgtagtttaactgacttatcctttatgtgtagtccttcattcaaaat Alignment from CESAR GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgtgttgttgtgcattaagaaagggggactcctcttttgcacttacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtatgtagtttaactgacttatcctttatgtgtagtccttcattcaaaat Alignment from Spaln_aa2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgtgttgttgtgcattaagaaagggggactcctcttttgcacttacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtatgtagtttaactgacttatcctttatgtgtagtccttcattcaaaat Alignment from Spaln_nt2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgtgttgttgtgcattaagaaagggggactcctcttttgcacttacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtatgtagtttaactgacttatcctttatgtgtagtccttcattcaaaat Alignment from Pairagon GTCACAGATAATATCAGCCAGAACACTAT-CCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgtgttgttgtgcattaagaaagggggactcctcttttgcacttacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAAT-TGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtatgtagtttaactgacttatcctttatgtgtagtccttcattcaaaat Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgtgttgttgtgcattaagaaagggggactcctcttttgcacttacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtatgtagtttaactgacttatcctttatgtgtagtccttcattcaaaat Alignment from Exonerate_coding2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgtgttgttgtgcattaagaaagggggactcctcttttgcacttacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtatgtagtttaactgacttatcctttatgtgtagtccttcattcaaaat Alignment from GeneWise GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgtgttgttgtgcattaagaaagggggactcctcttttgcacttacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtatgtagtttaactgacttatcctttatgtgtagtccttcattcaaaat #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAG-TCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGCTCAAATG-GCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGCTCAAATGGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGCTCAAATGGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAG-TCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGCTCAAATG-GCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Pairagon GAATCTGAAGAAATTAAG-TCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGCTCAAATG-GCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGCTCAAATGGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGCTCAAATGGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGCTCAAATGGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg #### Acsl5_ID11602_7 --> 0 - 0 Original Alignment AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG atatccagctttaatgattctttttggtaaacaatctactttcctttcagAATATAGGCAAACGAGAACT-CAAGAAACCAGTGgttcgtgtcatatttctgctagttatgagctgcttttgcctgtgtgattc Alignment from CESAR AATATAGGCAAAGAGAACTTCAAAAAACCAGTG atatccagctttaatgattctttttggtaaacaatctactttcctttcagAATATAGGCAAACGAGAACTCAAGAAACCAGTGgttcgtgtcatatttctgctagttatgagctgcttttgcctgtgtgattc Alignment from Spaln_aa2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG atatccagctttaatgattctttttggtaaacaatctactttcctttcagAATATAGGCAAACGAGAACTCAAGAAACCAGTGgttcgtgtcatatttctgctagttatgagctgcttttgcctgtgtgattc Alignment from Spaln_nt2Genome AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG atatccagctttaatgattctttttggtaaacaatctactttcctttcagAATATAGGCAAACGAGAAC-TCAAGAAACCAGTGgttcgtgtcatatttctgctagttatgagctgcttttgcctgtgtgattc Alignment from Pairagon AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG atatccagctttaatgattctttttggtaaacaatctactttcctttcagAATATAGGCAAACGAGAAC-TCAAGAAACCAGTGgttcgtgtcatatttctgctagttatgagctgcttttgcctgtgtgattc Alignment from Exonerate_protein2genome atatccagctttaatgattctttttggtaaacaatctactttcctttcagaatataggcaaacgagaactcaagaaaccagtggttcgtgtcatatttctgctagttatgagctgcttttgcctgtgtgattc Alignment from Exonerate_coding2genome atatccagctttaatgattctttttggtaaacaatctactttcctttcagaatataggcaaacgagaactcaagaaaccagtggttcgtgtcatatttctgctagttatgagctgcttttgcctgtgtgattc Alignment from GeneWise atatccagctttaatgattctttttggtaaacaatctactttcctttcagaatataggcaaacgagaactcaagaaaccagtggttcgtgtcatatttctgctagttatgagctgcttttgcctgtgtgattc #### Acsl5_ID11603_8 --> 0 - 1 Original Alignment CCTCCGAAGCCAGAGGATCTGAGC-GTCATCTGTTTCACCAGTGGAACTACAg ttttgcctgtgtgattcattgttggctcatacctgtcttctgttttccagCCACCAAAGCCAGAAGATCTCAGCCCTGATTT-CTTTACTAGTGGCACTACAagtaagtgctctgaaatcccacagtgttacagaaaaagtcatgcatgagct Alignment from CESAR CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAg ttttgcctgtgtgattcattgttggctcatacctgtcttctgttttccagCCACCAAAGCCAGAAGATCTCAGCCCTGATTTCTTTACTAGTGGCACTACAagtaagtgctctgaaatcccacagtgttacagaaaaagtcatgcatgagct Alignment from Spaln_aa2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG ttttgcctgtgtgattcattgttggctcatacctgtcttctgttttccagCCACCAAAGCCAGAAGATCTCAGCCCTGATTTCTTTACTAGTGGCACTACAAgtaagtgctctgaaatcccacagtgttacagaaaaagtcatgcatgagct Alignment from Spaln_nt2Genome CCTCCGAAGCCAGAGGATCTGAGCG-TCATCTGTTTCACCAGTGGAACTACAG ttttgcctgtgtgattcattgttggctcatacctgtcttctgttttccagCCACCAAAGCCAGAAGATCTCAGCCCTGATTTCTTT-ACTAGTGGCACTACAAgtaagtgctctgaaatcccacagtgttacagaaaaagtcatgcatgagct Alignment from Pairagon CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACC-------------AGTGGAACTACAG ttttgcctgtgtgattcattgttggctcatacctgtcttctgttttccagCCACCAAAGCCAGAAGATCTCAGC-------------CCTGATTTCTTTACTAGTGGCACTACAAgtaagtgctctgaaatcccacagtgttacagaaaaagtcatgcatgagct Alignment from Exonerate_protein2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG ttttgcctgtgtgattcattgttggctcatacctgtcttctgttttccagCCACCAAAGCCAGAAGATCTCAGCCCTGATTTCTTTACTAGTGGCACTACAAgtaagtgctctgaaatcccacagtgttacagaaaaagtcatgcatgagct Alignment from Exonerate_coding2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG ttttgcctgtgtgattcattgttggctcatacctgtcttctgttttccagCCACCAAAGCCAGAAGATCTCAGCCCTGATTTCTTTACTAGTGGCACTACAAgtaagtgctctgaaatcccacagtgttacagaaaaagtcatgcatgagct Alignment from GeneWise CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG ttttgcctgtgtgattcattgttggctcatacctgtcttctgttttccagCCACCAAAGCCAGAAGATCTCAGCCCTGATTTCTTTACTAGTGGCACTACAAgtaagtgctctgaaatcccacagtgttacagaaaaagtcatgcatgagct #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAA-GAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctacaagccttgggtatcactttccttttgctttgtcagTTCGTAAAAGAGGCCATTTTGGAGGACTTGCAGAAAATTGGGAAGCGAGGGCG-CTTGAAATCCCTTGAGCAGgtaaggatgtggtatgctttttgtagttgatgcagtaagtctagcttgga Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctacaagccttgggtatcactttccttttgctttgtcagTTCGTAAAAGAGGCCATTTTGGAGGACTTGCAGAAAATTGGGAAGCGAGGGCGCTTGAAATCCCTTGAGCAGgtaaggatgtggtatgctttttgtagttgatgcagtaagtctagcttgga Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctacaagccttgggtatcactttccttttgctttgtcagTTCGTAAAAGAGGCCATTTTGGAGGACTTGCAGAAAATTGGGAAGCGAGGGCGCTTGAAATCCCTTGAGCAGgtaaggatgtggtatgctttttgtagttgatgcagtaagtctagcttgga Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctacaagccttgggtatcactttccttttgctttgtcagTTCGTAAAAGAGGCCATTTTGGAGGACTTGCAGAAAATTGGGAAGCGAGGGCGCTTGAAATCCCTTGAGCAGgtaaggatgtggtatgctttttgtagttgatgcagtaagtctagcttgga Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctacaagccttgggtatcactttccttttgctttgtcagTTCGTAAAAGAGGCCATTTTGGAGGACTTGCAGAAAATTGGGAAGCGAGGGCGCTTGAAATCCCTTGAGCAGgtaaggatgtggtatgctttttgtagttgatgcagtaagtctagcttgga Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctacaagccttgggtatcactttccttttgctttgtcagTTCGTAAAAGAGGCCATTTTGGAGGACTTGCAGAAAATTGGGAAGCGAGGGCGCTTGAAATCCCTTGAGCAGgtaaggatgtggtatgctttttgtagttgatgcagtaagtctagcttgga Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctacaagccttgggtatcactttccttttgctttgtcagTTCGTAAAAGAGGCCATTTTGGAGGACTTGCAGAAAATTGGGAAGCGAGGGCGCTTGAAATCCCTTGAGCAGgtaaggatgtggtatgctttttgtagttgatgcagtaagtctagcttgga Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctacaagccttgggtatcactttccttttgctttgtcagTTCGTAAAAGAGGCCATTTTGGAGGACTTGCAGAAAATTGGGAAGCGAGGGCGCTTGAAATCCCTTGAGCAGgtaaggatgtggtatgctttttgtagttgatgcagtaagtctagcttgga #### Actn3_ID691_19 --> 0 - 0 Original Alignment TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTC-CGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtaggtgacttcacctgattaatttttatttatttatttgtagAAGCGGAACAGGATGATGGAGCCCGATGACTTCCCGAGCTTGTC-CATCTCCATGGGTTATGATCTAgtcagtaccttagccagacctatcacaccattagcttacttatgttttgt Alignment from CESAR TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtaagagacttcacctgattaatttttatttatttatttgtagAAGCGGAACAGGATGATGGAGCCCGATGACTTCCCGAGCTTGTCCATCTCCATGGGTTATGATCTAgtcagtaccttagccagacctatcacaccattagcttacttatgttttgt Alignment from Spaln_aa2Genome TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtaggtgacttcacctgattaatttttatttatttatttgtagAAGCGGAACAGGATGATGGAGCCCGATGACTTCCCGAGCTTGTCCATCTCCATGGGTTATGATCTAgtcagtaccttagccagacctatcacaccattagcttacttatgttttgt Alignment from Spaln_nt2Genome TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtaggtgacttcacctgattaatttttatttatttatttgtagAAGCGGAACAGGATGATGGAGCCCGATGACTTCCCGAGCTTGTCCATCTCCATGGGTTATGATCTAgtcagtaccttagccagacctatcacaccattagcttacttatgttttgt Alignment from Pairagon TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTT-CCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtaggtgacttcacctgattaatttttatttatttatttgtagAAGCGGAACAGGATGATGGAGCCCGATGACTTCCCGAGCTTGTC-CATCTCCATGGGTTATGATCTAgtcagtaccttagccagacctatcacaccattagcttacttatgttttgt Alignment from Exonerate_protein2genome TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtaggtgacttcacctgattaatttttatttatttatttgtagAAGCGGAACAGGATGATGGAGCCCGATGACTTCCCGAGCTTGTCCATCTCCATGGGTTATGATCTAgtcagtaccttagccagacctatcacaccattagcttacttatgttttgt Alignment from Exonerate_coding2genome TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtaggtgacttcacctgattaatttttatttatttatttgtagAAGCGGAACAGGATGATGGAGCCCGATGACTTCCCGAGCTTGTCCATCTCCATGGGTTATGATCTAgtcagtaccttagccagacctatcacaccattagcttacttatgttttgt Alignment from GeneWise TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtaggtgacttcacctgattaatttttatttatttatttgtagAAGCGGAACAGGATGATGGAGCCCGATGACTTCCCGAGCTTGTCCATCTCCATGGGTTATGATCTAgtcagtaccttagccagacctatcacaccattagcttacttatgttttgt #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACC-CTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCCTCAGTTCAA-GGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCCTCAGTTCAAGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCCTCAGTTCAAGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCCTCAGTTCAAGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCA-CCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCCTCAGTTCA-AGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCCTCAGTTCAAGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCCTCAGTTCAAGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCCTCAGTTCAAGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATT-GACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTCGACCAGCTGC-GCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTCGACCAGCTGCGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTCGACCAGCTGCGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTCGACCAGCTGCGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATT-GACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTCGACCAGCTGC-GCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTCGACCAGCTGCGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTCGACCAGCTGCGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTCGACCAGCTGCGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAAC-CGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG cgttcacctgtcacccattctgccagtactgtgtcgtctcctctccacagCTGTTAGAGTGGAATTGCCGGACAGTTCTATGGCTAGAAAACCCGTGTAG-TGAACCTAGCATG------------CACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAAATCAACTTCAACACGCTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCCGAAGGCAAGTTAGTTTCTgtaggaccaacaaggtatcccgcatgttacagctgtgcctacatgcccac Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG cgttcacctgtcacccattctgccagtactgtgtcgtctcctctccacagCTGTTAGAGTGGAATTGCCGGACAGTTCTATGGCTAGAAAACCCGTGTAGTGAACCTAGCATG------------CACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAAATCAACTTCAACACGCTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCCGAAGGCAAGTTAGTTTCTgtaggaccaacaaggtatcccgcatgttacagctgtgcctacatgcccac Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG cgttcacctgtcacccattctgccagtactgtgtcgtctcctctccacagCTGTTAGAGTGGAATTGCCGGACAGTTCTATGGCTAGAAAACCCGTGTAGTGAACCTAGCATG------------CACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAAATCAACTTCAACACGCTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCCGAAGGCAAGTTAGTTTCTgtaggaccaacaaggtatcccgcatgttacagctgtgcctacatgcccac Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGG-GCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG cgttcacctgtcacccattctgccagtactgtgtcgtctcctctccacagCTGTTAGAGTGGAATTGCCGGACAGTTCTATGGCTAGAAAACC-CGTGTAGTGAACCTAGCAT------------GCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAAATCAACTTCAACACGCTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCCGAAGGCAAGTTAGTTTCTgtaggaccaacaaggtatcccgcatgttacagctgtgcctacatgcccac Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTG-GGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG cgttcacctgtcacccattctgccagtactgtgtcgtctcctctccacagCTGTTAGAGTGGAATTGCCGGACAGTTCTATGGCTAGAAAACC-CGTGTAGTGAACCTAGCAT------------GCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAAATCAACTTCAACACGCTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCCGAAGGCAAGTTAGTTTCTgtaggaccaacaaggtatcccgcatgttacagctgtgcctacatgcccac Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG cgttcacctgtcacccattctgccagtactgtgtcgtctcctctccacagCTGTTAGAGTGGAATTGCCGGACAGTTCTATGGCTAGAAAACCCGTGTAGTGAACCTAGCATG------------CACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAAATCAACTTCAACACGCTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCCGAAGGCAAGTTAGTTTCTgtaggaccaacaaggtatcccgcatgttacagctgtgcctacatgcccac Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG cgttcacctgtcacccattctgccagtactgtgtcgtctcctctccacagCTGTTAGAGTGGAATTGCCGGACAGTTCTATGGCTAGAAAACCCGTGTAGTGAACCTAGCATG------------CACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAAATCAACTTCAACACGCTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCCGAAGGCAAGTTAGTTTCTgtaggaccaacaaggtatcccgcatgttacagctgtgcctacatgcccac Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG cgttcacctgtcacccattctgccagtactgtgtcgtctcctctccacagCTGTTAGAGTGGAATTGCCGGACAGTTCTATGGCTAGAAAACCCGTGTAGTGAACCTAGCATG------------CACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAAATCAACTTCAACACGCTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCCGAAGGCAAGTTAGTTTCTgtaggaccaacaaggtatcccgcatgttacagctgtgcctacatgcccac #### Actn3_ID701_9 --> 0 - 0 Original Alignment GCAGAGACTGCTGCCAACAGGATCTGC-AAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCCAAGGTCTTGC-AGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from CESAR GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCCAAGGTCTTGCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Spaln_aa2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCCAAGGTCTTGCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Spaln_nt2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCCAAGGTCTTGCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Pairagon GCAGAGACTGCTGCCAACAGGATCTG-CAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCCAAGGTCTT-GCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Exonerate_protein2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCCAAGGTCTTGCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Exonerate_coding2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCCAAGGTCTTGCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from GeneWise GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCCAAGGTCTTGCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGC-AATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCCAATGTTA-TGTACAGAACTTCCATACTaggtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCCAATGTTATGTACAGAACTTCCATACTaggtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCCAATGTTATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCCAATGTTATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCG-CAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCCAATGTT-ATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCCAATGTTATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCCAATGTTATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCCAATGTTATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCC-ATTCAGGACATCTCTGTAGAAg gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCCATTCAGG-CATCTCTGTAGAAggttggttgatgcaaaatgcctagttgggccagatcatggcactctctttg Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCCATTCAGGCATCTCTGTAGAAggttggttgatgcaaaatgcctagttgggccagatcattcttctttccaat Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCCATTCAGGCATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatggcactctctttg Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCCATTCAGGCATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatggcactctctttg Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTG-CCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCCATTCAGG-CATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatggcactctctttg Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCCATTCAGGCATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatggcactctctttg Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCCATTCAGGCATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatggcactctctttg Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCCATTCAGGCATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatggcactctctttg #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAA-GGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacaggtGCTAGACTGCCTAGGCCCGATAAACGGCAAGA-GTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAggtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacaggtGCTAGACTGCCTAGGCCCGATAAACGGCAAGAGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAggtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAACGGCAAGAGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAACGGCAAGAGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAA-GGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAACGGCAAGA-GTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAACGGCAAGAGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAACGGCAAGAGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAACGGCAAGAGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACT-GTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcaggtATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTGATGGTGACCTAGCCGGCATGCGTGC-CCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from CESAR gcATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcaggtATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTGATGGTGACCTAGCCGGCATGCGTGCCCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Spaln_aa2Genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTGATGGTGACCTAGCCGGCATGCGTGCCCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Spaln_nt2Genome GCATGGACTTACCC------GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACT-GTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTGATGGTGACCTAGCCGGCATGCGTGC-CCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Pairagon GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCA-------------------- gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTGATGGTGACCTAGCCGGCATGCGTGCCCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Exonerate_protein2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTGATGGTGACCTAGCCGGCATGCGTGCCCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Exonerate_coding2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTGATGGTGACCTAGCCGGCATGCGTGCCCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from GeneWise -----GGCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTGATGGTGACCTAGCCGGCATGCGTGCCCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAAC-AAACAGCTGGGCCACGAGGAGg cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACCAAACAAC-AGGTCAGGGGGAAggtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACCAAACAACAGGTCAGGGGGAAggtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Spaln_aa2Genome cttattccttagatctgcctatagcatcaccattgtgctttcccacccagttactggacagtgaccaggagttgtatcgcatattccctcttaccattgctgagtggtggcaacaggaggtggcagagaccgtttttaccagcaatgctgaaacagaccgtcttgaggcacaaaaccaaacaacaggtcagggggaaggtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCA-----------CAAAACCAAACAAC-AGGTCAGGGGGAAGgtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Pairagon TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTT---TACCAGCAATGCTGAAACAGACCGTCTTGAGGCA-----------CAAAACCAAACAAC-AGGTCAGGGGGAAGgtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAA cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAAAACCAAACAACAGgtcagggggaaggtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAA cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAAAACCAAACAACAGgtcagggggaaggtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACCAAACAACAGGTCAGGGGGAAGgtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTG-CTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCTGCTCCCTGCTTGGGGGGTT-GCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCTGCTCCCTGCTTGGGGGGTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCTGCTCCCTGCTTGGGGGGTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCTGCTCCCTGCTTGGGGGGTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCTGCTCCCTGCTTGGGGGGTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCTGCTCCCTGCTTGGGGGGTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCTGCTCCCTGCTTGGGGGGTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCTGCTCCCTGCTTGGGGGGTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTC-AGCTTCATCCTGGACCTCATGAACg gtGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTACAGCTTCA-CCTGGACCTTATGAATggtaagtcagtctagagaatgtcctaatacatttcctttgtaggtGCAGAA Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTACAGCTTCACCTGGACCTTATGAATggtaagtcagtctagagaatgtcccttcggaccctccccccaggtGCAGAA Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTACAGCTTCACCTGGACCTTATGAATGgtaagtcagtctagagaatgtcctaatacatttcctttgtagGTGCAGAA Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCT-CAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTACAGCTTCA-CCTGGACCTTATGAATGgtaagtcagtctagagaatgtcctaatacatttcctttgtagGTGCAGAA Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCT-CAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTACAGCTTCA-CCTGGACCTTATGAATGgtaagtcagtctagagaatgtcctaatacatttcctttgtagGTGCAGAA Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTACAGCTTCACCTGGACCTTATGAATGgtaagtcagtctagagaatgtcctaatacatttcctttgtagGTGCAGAA Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTACAGCTTCACCTGGACCTTATGAATGgtaagtcagtctagagaatgtcctaatacatttcctttgtagGTGCAGAA Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTACAGCTTCACCTGGACCTTATGAATGgtaagtcagtctagagaatgtcctaatacatttcctttgtagGTGCAGAA #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTC-AGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat agcacaccagcaacactataagagtagttctcccctcccctcttaaccagCTGACCATGAATGATTTTCAGTGTACATC-AATTATCGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAGGCAGATGTAGGCAAGatgtaaggagtggaccagtagaggtggccatcaaaggggccaggctttgcat Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat agcacaccagcaacactataagagtagttctcccctcccctcttaaccagCTGACCATGAATGATTTTCAGTGTACATCAATTATCGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAGGCAGATGTAGGCAAGatgtaaggagtggaccagtagaggtggccatcaaaggggccaggctttgcat Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcaacactataagagtagttctcccctcccctcttaaccagCTGACCATGAATGATTTTCAGTGTACATCAATTATCGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAGGCAGATGTAGGCAAGATgtaaggagtggaccagtagaggtggccatcaaaggggccaggctttgcat Alignment from Spaln_nt2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcaacactataagagtagttctcccctcccctcttaaccagCTGACCATGAATGATTTTCAGTGTACATCAATTATCGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAGGCAGATGTAGGCAAGATgtaaggagtggaccagtagaggtggccatcaaaggggccaggctttgcat Alignment from Pairagon CTGACCATGAATGA-CTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcaacactataagagtagttctcccctcccctcttaaccagCTGACCATGAATGATTTTCAGTGTACATC-AATTATCGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAGGCAGATGTAGGCAAGATgtaaggagtggaccagtagaggtggccatcaaaggggccaggctttgcat Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcaacactataagagtagttctcccctcccctcttaaccagCTGACCATGAATGATTTTCAGTGTACATCAATTATCGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAGGCAGATGTAGGCAAGATgtaaggagtggaccagtagaggtggccatcaaaggggccaggctttgcat Alignment from Exonerate_coding2genome ACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCACCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT AGCACACCAGCAACACTATAAGAGTAGTTCTCCCCTCCCCTCTTAACCAGCTGACCATGAATGATTTTCAGTGTACATCAATTATCGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAGGCAGATGTAGGCAAGATgtaaggagtggaccagtagaggtggccatcaaaggggccaggctttgcat Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcaacactataagagtagttctcccctcccctcttaaccagCTGACCATGAATGATTTTCAGTGTACATCAATTATCGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCAAGGCAGATGTAGGCAAGATgtaaggagtggaccagtagaggtggccatcaaaggggccaggctttgcat #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATTTGTCAGAAC-CTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCAGAAACCTCCGAA-GGATTTATTCCAAAAGTTTATAGAGaggtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from CESAR CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCAGAAACCTCCGAAGGATTTATTCCAAAAGTTTATAGAGaggtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCAGAAACCTCCGAAGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTCAGAA-CCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCAGAAACCTCCGA-AGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Pairagon CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCAGAAACCTCCGA-AGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCAGAAACCTCCGAAGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Exonerate_coding2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCAGAAACCTCCGAAGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from GeneWise CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCAGAAACCTCCGAAGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGA-GAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacccacagccagcttcatacagtggccattgttaaccttgttttatagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGACGAGA-CTTTGAGTCCTACATTATGAAGGAGCTCCTCGCATGCTCACATgtaagcgctgaatccatccaatactcctagatatgtgggcttaaagagac Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacccacagccagcttcatacagtggccattgttaaccttgttttatagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGACGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTCGCATGCTCACATgtaagcgctgaatccatccaatactcctagatatgtgggcttaaagagac Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacccacagccagcttcatacagtggccattgttaaccttgttttatagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGACGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTCGCATGCTCACATgtaagcgctgaatccatccaatactcctagatatgtgggcttaaagagac Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacccacagccagcttcatacagtggccattgttaaccttgttttatagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGACGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTCGCATGCTCACATgtaagcgctgaatccatccaatactcctagatatgtgggcttaaagagac Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacccacagccagcttcatacagtggccattgttaaccttgttttatagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGACGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTCGCATGCTCACATgtaagcgctgaatccatccaatactcctagatatgtgggcttaaagagac Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacccacagccagcttcatacagtggccattgttaaccttgttttatagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGACGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTCGCATGCTCACATgtaagcgctgaatccatccaatactcctagatatgtgggcttaaagagac Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacccacagccagcttcatacagtggccattgttaaccttgttttatagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGACGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTCGCATGCTCACATgtaagcgctgaatccatccaatactcctagatatgtgggcttaaagagac Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacccacagccagcttcatacagtggccattgttaaccttgttttatagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGACGAGACTTTGAGTCCTACATTATGAAGGAGCTCCTCGCATGCTCACATgtaagcgctgaatccatccaatactcctagatatgtgggcttaaagagac #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACC-ATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg cctgctctctaaacctgaagccaaatgtatatgaccttttccctctgtagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGAAGCACTATGGTTAAGTTGCAGGCTGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGACACACATGG-TTCCACCCCCATTTCTGCAAGCGCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtggagggactaagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg cctgctctctaaacctgaagccaaatgtatatgaccttttccctctgtagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGAAGCACTATGGTTAAGTTGCAGGCTGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGACACACATGGTTCCACCCCCATTTCTGCAAGCGCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtggagggactaagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaaacctgaagccaaatgtatatgaccttttccctctgtagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGAAGCACTATGGTTAAGTTGCAGGCTGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGACACACATGGTTCCACCCCCATTTCTGCAAGCGCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtggagggactaagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACAC-CATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaaacctgaagccaaatgtatatgaccttttccctctgtagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGAAGCACTATGGTTAAGTTGCAGGCTGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGACACACATGG-TTCCACCCCCATTTCTGCAAGCGCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtggagggactaagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACAC-CATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaaacctgaagccaaatgtatatgaccttttccctctgtagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGAAGCACTATGGTTAAGTTGCAGGCTGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGACACACATGG-TTCCACCCCCATTTCTGCAAGCGCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtggagggactaagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaaacctgaagccaaatgtatatgaccttttccctctgtagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGAAGCACTATGGTTAAGTTGCAGGCTGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGACACACATGGTTCCACCCCCATTTCTGCAAGCGCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtggagggactaagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaaacctgaagccaaatgtatatgaccttttccctctgtagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGAAGCACTATGGTTAAGTTGCAGGCTGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGACACACATGGTTCCACCCCCATTTCTGCAAGCGCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtggagggactaagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaaacctgaagccaaatgtatatgaccttttccctctgtagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGAAGCACTATGGTTAAGTTGCAGGCTGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGACACACATGGTTCCACCCCCATTTCTGCAAGCGCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtggagggactaagctttgttgctgtagtttgcttgtattgctgagttgg #### Aip_ID331_4 --> 0 - 0 Original Alignment GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGAT-GAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATCGAGGAGA-AGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from CESAR GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATCGAGGAGAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Spaln_aa2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATCGAGGAGAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Spaln_nt2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATCGAGGAGAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Pairagon GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGAT-GAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATCGAGGAG-AAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Exonerate_protein2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATCGAGGAGAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Exonerate_coding2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATCGAGGAGAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from GeneWise GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATCGAGGAGAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG agcatacatgccctacctgtttttccccttggattcttttatttttcaaggaAATTGTGTGGTATTGAGGCCATCTGAGATTAGTAAGAACCACAGAA---A-GCAGGCAGAGCTACTG---CAGCATCTGGATCAGgtgtgtactcactgtttctttatttttagAGCTGTTTTGCTGTGATGCTG Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG agcatacatgccctacctgtttttccccttggattcttttatttttcaaggaAATTGTGTGGTATTGAGGCCATCTGAGATTAGTAAGAACCACAGAAAG---CAGGCAGAGCTACTG---CAGCATCTGGATCAGgtgtggaaatctcctgtttttgtcttcagAGCTGTTTTGCTGTGATGCTG Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCC CCAGTATCTGGACCAGAGC agcatacatgccctacctgtttttccccttggattcttttatttttcaagGAAATTGTGTGGTATTGAGGCCATCTGAGATTAGTAAGAACCACAGAAAG---CAGGCAGAGCTACTGCAgcatctggatcaggtgtgtactcactgtttctttatttttagagC------------------ Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-------------------------------AGCTGCTTTGCTGTGATGT agcatacatgccctacctgtttttccccttggattcttttatttttcaagGAAATTGTGTGGTATTGAGGCCATCTGAGATTAGTAAGAAC-CACAGAA--AGCAGGCAGAGCTACTG---CAGCATCTGGATCAGGTGTGTACTCACTGTTTCTTTATTTTTAGAG--CTGTTTTGCTGTGATGC Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAA-CACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTG agcatacatgccctacctgtttttccccttggattcttttatttttcaagGAAATTGTGTGGTATTGAGGCCATCTGAGATTAGTAAGAACCACAGAAA----GCAGGCAGAGCTACTG---CAGCATCTGGATCAGGTGTGTACTCACTGTTTCTTTATTTTTAGAGCTGTTTTGCTGTGATGCTG Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATG agcatacatgccctacctgtttttccccttggattcttttatttttcaagGAAATTGTGTGGTATTGAGGCCATCTGAGATTAGTAAGAACCACAGAAAG---CAGGCAGAGCTACTG---CAGCATCTGGATCAG---gtgtgtactcactgtttctttatttttagagcTGTTTTGCTGTGATG Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGCTGCTTTGCTGTGATGT-----TG agcatacatgccctacctgtttttccccttggattcttttatttttcaaggaaattgtgtggtattgagGCCATCTGAGATTAGTAAGAACCACAGAAAGCAGGCAGAGCTACTGCAGCATC-TGGATCAGGTGTGTACTCACTGTTTCTTTATTTTTAGAGCTGTTTTGCTGTGATGCTG Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG agcatacatgccctacctgtttttccccttggattcttttatttttcaagGAAATTGTGTGGTATTGAGGCCATCTGAGATTAGTAAGAACCACAGAAAG---CAGGCAGAGCTACTG---CAGCATCTGGATCAGgtgtgtactcactgtttctttatttttagAGCTGTTTTGCTGTGATGCTG #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGT-GTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagggGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTCGTCTTAGGTG-TGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagggGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTCGTCTTAGGTGTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTCGTCTTAGGTGTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTCGTCTTAGGTGTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGT--------GTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTCGTCTTAGGTG--------TGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Exonerate_protein2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTCGTCTTAGGTGTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTCGTCTTAGGTGTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTCGTCTTAGGTGTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACC-CCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCTTTAG-GCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCTTTAGGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCTTTAGGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCTTTAGGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCTTTAGGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCTTTAGGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Exonerate_coding2genome AAGCACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgCAGCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCTTTAGGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCTTTAGGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACAT-GATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATCGATGCTGTGA-GATCAACTACTACAAAAACATTAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from CESAR GAAGGGGACAGTGCCCTACAT-GATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATCGATGCTGTGA-GATCAACTACTACAAAAACATTAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATCGATGCTGTGAGATCAACTACTACAAAAACATTAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATCGATGCTGTGAGATCAACTACTACAAAAACATTAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Pairagon GAAGGGGACAGTGCCCTACAT-GATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATCGATGCTGTGAGA-TCAACTACTACAAAAACATTAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATCGATGCTGTGAGATCAACTACTACAAAAACATTAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Exonerate_coding2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATCGATGCTGTGAGATCAACTACTACAAAAACATTAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATCGATGCTGTGAGATCAACTACTACAAAAACATTAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTGAGAAAAGCC-CTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaataatacacacctaagttgtcttcctctcttgtacccagCCCTTAGATGAAGTATTGAGGAAAGCCCCTCACAG-CCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtaatttgttcttaacagaattgctcctaaaacaggttcaaggaacttct Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaataatacacacctaagttgtcttcctctcttgtacccagCCCTTAGATGAAGTATTGAGGAAAGCCCCTCACAGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtaatttgttcttaacagaattgctcctaaaacaggttcaaggaacttct Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaataatacacacctaagttgtcttcctctcttgtacccagCCCTTAGATGAAGTATTGAGGAAAGCCCCTCACAGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtaatttgttcttaacagaattgctcctaaaacaggttcaaggaacttct Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaataatacacacctaagttgtcttcctctcttgtacccagCCCTTAGATGAAGTATTGAGGAAAGCCCCTCACAGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATT---TGCTGATGAACTACATGGTGCCATGAAGgtaatttgttcttaacagaattgctcctaaaacaggttcaaggaacttct Alignment from Pairagon CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaataatacacacctaagttgtcttcctctcttgtacccagCCCTTAGATGAAGTATTGAGGAAAGCCCCTCACAGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTTGCT---GATGAACTACATGGTGCCATGAAGgtaatttgttcttaacagaattgctcctaaaacaggttcaaggaacttct Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaataatacacacctaagttgtcttcctctcttgtacccagCCCTTAGATGAAGTATTGAGGAAAGCCCCTCACAGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtaatttgttcttaacagaattgctcctaaaacaggttcaaggaacttct Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaataatacacacctaagttgtcttcctctcttgtacccagCCCTTAGATGAAGTATTGAGGAAAGCCCCTCACAGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtaatttgttcttaacagaattgctcctaaaacaggttcaaggaacttct Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaataatacacacctaagttgtcttcctctcttgtacccagCCCTTAGATGAAGTATTGAGGAAAGCCCCTCACAGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtaatttgttcttaacagaattgctcctaaaacaggttcaaggaacttct #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCT-CGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag ctctgaccttaggttaggtgatttgacacctcctgtgtttgtgtctttagGTGTCCTTGTCATCTGTCGACAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCCGCCGGCATT-ATTCATGGGAACTACCTTCAATCCCaggtgagttgggttagggactcggtgagatatcccacaatgcatccaggaga Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag ctctgaccttaggttaggtgatttgacacctcctgtgtttgtgtctttagGTGTCCTTGTCATCTGTCGACAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCCGCCGGCATTATTCATGGGAACTACCTTCAATCCCaggtgagttgggttagggactcggtgagatatcccacaatgcatccaggaga Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttaggttaggtgatttgacacctcctgtgtttgtgtctttagGTGTCCTTGTCATCTGTCGACAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCCGCCGGCATTATTCATGGGAACTACCTTCAATCCCAGgtgagttgggttagggactcggtgagatatcccacaatgcatccaggaga Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTC-GCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttaggttaggtgatttgacacctcctgtgtttgtgtctttagGTGTCCTTGTCATCTGTCGACAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCC------TACGGCTGCCTCAGCCAGGTCTCCGCCGGCATT-ATTCATGGGAACTACCTTCAATCCCAGgtgagttgggttagggactcggtgagatatcccacaatgcatccaggaga Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCT-CGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttaggttaggtgatttgacacctcctgtgtttgtgtctttagGTGTCCTTGTCATCTGTCGACAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCC------TACGGCTGCCTCAGCCAGGTCTCCGCCGGCATT-ATTCATGGGAACTACCTTCAATCCCAGgtgagttgggttagggactcggtgagatatcccacaatgcatccaggaga Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttaggttaggtgatttgacacctcctgtgtttgtgtctttagGTGTCCTTGTCATCTGTCGACAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCCGCCGGCATTATTCATGGGAACTACCTTCAATCCCAGgtgagttgggttagggactcggtgagatatcccacaatgcatccaggaga Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttaggttaggtgatttgacacctcctgtgtttgtgtctttagGTGTCCTTGTCATCTGTCGACAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCCGCCGGCATTATTCATGGGAACTACCTTCAATCCCAGgtgagttgggttagggactcggtgagatatcccacaatgcatccaggaga Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttaggttaggtgatttgacacctcctgtgtttgtgtctttagGTGTCCTTGTCATCTGTCGACAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCCGCCGGCATTATTCATGGGAACTACCTTCAATCCCAGgtgagttgggttagggactcggtgagatatcccacaatgcatccaggaga #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAA-CTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAACATCTATA-TGACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAA---CTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAACATCTATAT---GACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAACATCTATATGACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG TAGAACTCTA cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGgcatgaggccaccattagaacatctatatgactatgacaactcagtactggacggacaacttgcaatgtacatcctcaatgtagCCAGAATCAC Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGgcatgaggccaccattagaacatctatatgactatgacaactcagtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCT GGAAGTAGAA cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTggaaggcatgaggccaccattagaacatctatatgactatgacaactcagtactggacggacaacttgcaatgtacatcctcaatgtagCCAGAATCAC Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCT GGAAGTAGAA cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTggaaggcatgaggccaccattagaacatctatatgactatgacaactcagtactggacggacaacttgcaatgtacatcctcaatgtagCCAGAATCAC Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAACATCTATATGACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac #### Bscl2_ID2423_6 --> 0 - 2 Original Alignment TATGTGCCAACAACTGGAGCAATTATT-GAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag atcctcaatgtagccagaatcacatgtacacctgctctcttgtgtcatagTATGTGCCAACAACTGGAGCAATTATTCGAAATTCACA-CAAGCGCATCCAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCaggcaagaaaattatagaaggaacagttttcctacaatgtatcccaaatagt Alignment from CESAR TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag atcctcaatgtagccagaatcacatgtacacctgctctcttgtgtcatagTATGTGCCAACAACTGGAGCAATTATTCGAAATTCACACAAGCGCATCCAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCaggcaagaaaattatagaaggaacagttttcctacaatgtatcccaaatagt Alignment from Spaln_aa2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcacatgtacacctgctctcttgtgtcatagTATGTGCCAACAACTGGAGCAATTATTCGAAATTCACACAAGCGCATCCAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgcaagaaaattatagaaggaacagttttcctacaatgtatcccaaatagt Alignment from Spaln_nt2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcacatgtacacctgctctcttgtgtcatagTATGTGCCAACAACTGGAGCAATTATTCGAAATTCACACAAGCGCATCCAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgcaagaaaattatagaaggaacagttttcctacaatgtatcccaaatagt Alignment from Pairagon TATGTGCCAACAACTGGAGCAATTATT-GAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcacatgtacacctgctctcttgtgtcatagTATGTGCCAACAACTGGAGCAATTATTCGAAATTCACA-CAAGCGCATCCAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgcaagaaaattatagaaggaacagttttcctacaatgtatcccaaatagt Alignment from Exonerate_protein2genome GGAAGTAGAACTCTACTCTGACTATAGGGAGAATTCGTATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagCCAGAATCACATGTACACCTGCTCTCTTGTGTCATAGTATGTGCCAACAACTGGAGCAATTATTCGAAATTCACACAAGCGCATCCAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgcaagaaaattatagaaggaacagttttcctacaatgtatcccaaatagt Alignment from Exonerate_coding2genome GGAAGTAGAACTCTACTCTGACTATAGGGAGAATTCGTATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagCCAGAATCACATGTACACCTGCTCTCTTGTGTCATAGTATGTGCCAACAACTGGAGCAATTATTCGAAATTCACACAAGCGCATCCAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgcaagaaaattatagaaggaacagttttcctacaatgtatcccaaatagt Alignment from GeneWise TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAGG----------------------------------- atcctcaatgtagccagaatcacatgtacacctgctctcttgtgtcatagTATGTGCCAACAACTGGAGCAATTATTCGAAATTCACACAAGCGCATCCAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGGCAAGAAAATTATAGAAGGAACAGTTTTCCTACAATgtatcccaaatagt #### Bscl2_ID2424_7 --> 1 - 0 Original Alignment gTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGC-GTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacaaccgtgtgcttttatcattttgatttatcctaggTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTCGTCATTGTGC-TTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgggctcgttttctctcactagactagggaaccaatttc Alignment from CESAR gTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGC-GTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacaaccgtgtgcttttatcattttgatttatcctaggTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTCGTCATTGTGC-TTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgggctcgttttctctcactagactagggaaccaatttc Alignment from Spaln_aa2Genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacaaccgtgtgcttttatcattttgatttatcctagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTCGTCATTGTGCTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgggctcgttttctctcactagactagggaaccaatttc Alignment from Spaln_nt2Genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacaaccgtgtgcttttatcattttgatttatcctagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTCGTCATTGTGCTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgggctcgttttctctcactagactagggaaccaatttc Alignment from Pairagon GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAG-CGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacaaccgtgtgcttttatcattttgatttatcctagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTCGTCATTGTGCT-TTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgggctcgttttctctcactagactagggaaccaatttc Alignment from Exonerate_protein2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacaaccgtgtgcttttatcattttgatttatcctagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTCGTCATTGTGCTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgggctcgttttctctcactagactagggaaccaatttc Alignment from Exonerate_coding2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacaaccgtgtgcttttatcattttgatttatcctagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTCGTCATTGTGCTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgggctcgttttctctcactagactagggaaccaatttc Alignment from GeneWise GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacaaccgtgtgcttttatcattttgatttatcctagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTCGTCATTGTGCTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgggctcgttttctctcactagactagggaaccaatttc #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCG-CGTCGGATCTCGCGCCATCAGCCAg tttctcagagggcagtctaggatcacaactgccgtggttctgaccagcagGTCAATACATGTCAAAGGGACAACTCACACCACGGA------CGACCATA-TTCACACCACCAGCCAggtgtgtgaattaggcattaggaatttggaaaaatacacttggggagtcct Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg tttctcagagggcagtctaggatcacaactgccgtggttctgaccagcagGTCAATACATGTCAAAGGGACAACTCACACCACGGACGACCATAT------TCACACCACCAGCCAggtgtgtgaattaggcattaggaatttggaaaaatacacttggggagtcct Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tttctcagagggcagtctaggatcacaactgccgtggttctgaccagcagGTCAATACATGTCAAAGGGACAACTCACACCACGGACGACCATAT------TCACACCACCAGCCAGgtgtgtgaattaggcattaggaatttggaaaaatacacttggggagtcct Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tttctcagagggcagtctaggatcacaactgccgtggttctgaccagcagGTCAATACATGTCAAAGGGACAACTCACACCACGG------ACGACCATATTCACACCACCAGCCAGgtgtgtgaattaggcattaggaatttggaaaaatacacttggggagtcct Alignment from Pairagon GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCG------------CCATCAGCCAG tttctcagagggcagtctaggatcacaactgccgtggttctgaccagcagGTCAATACATGTCAAAGGGACAACTCACACCACGG------------------ACGACCATATTCACACCACCAGCCAGgtgtgtgaattaggcattaggaatttggaaaaatacacttggggagtcct Alignment from Exonerate_protein2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tttctcagagggcagtctaggatcacaactgccgtggttctgaccagcagGTCAATACATGTCAAAGGGACAACTCACACCACGGACGACCA------TATTCACACCACCAGCCAGgtgtgtgaattaggcattaggaatttggaaaaatacacttggggagtcct Alignment from Exonerate_coding2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tttctcagagggcagtctaggatcacaactgccgtggttctgaccagcagGTCAATACATGTCAAAGGGACAACTCACACCACGGACGACCA------TATTCACACCACCAGCCAGgtgtgtgaattaggcattaggaatttggaaaaatacacttggggagtcct Alignment from GeneWise ---GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tttctcagagggcagtctaggatcacaactgccgtggttctgaccagCAGGTCAATACATGTCAAAGGGACAACTCACACCACGGACGACCA------TATTCACACCACCAGCCAGgtgtgtgaattaggcattaggaatttggaaaaatacacttggggagtcct #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTG-AATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagttccgatactctcccccccattgcaacacttgccatttcttgcccagagGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGCAATGGGG-GGAGGAGCGGGAACCGGATGCTGGTGCTggtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagttccgatactctcccccccattgcaacacttgccatttcttgcccagagGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGCAATGGGGGGAGGAGCGGGAACCGGATGCTGGTGCTggtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccgatactctcccccccattgcaacacttgccatttcttgcccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGCAATGGGGGGAGGAGCGGGAACCGGATGCTGGTGCTGgtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccgatactctcccccccattgcaacacttgccatttcttgcccagAGGGGCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGCAATGGGGGGAGGAGCGGGAACCGGATGCTGGTGCTGgtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccgatactctcccccccattgcaacacttgccatttcttgcccagAGGGGCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGCAATGGGGGGAGGAGCGGGAACCGGATGCTGGTGCTGgtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Exonerate_protein2genome cagttccgatactctcccccccattgcaacacttgccatttcttgcccagaggggcaaccagaagaggagaaagcaaagaagtggccactgcaatggggggaggagcgggaaccggatgctggtgctggtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Exonerate_coding2genome cagttccgatactctcccccccattgcaacacttgccatttcttgcccagaggggcaaccagaagaggagaaagcaaagaagtggccactgcaatggggggaggagcgggaaccggatgctggtgctggtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccgatactctcccccccattgcaacacttgccatttcttgcccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGCAATGGGGGGAGGAGCGGGAACCGGATGCTGGTGCTGgtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag #### Btaf1_ID7227_10 --> 0 - 0 Original Alignment ATGATTCAGCAGCATCAAGAGTGGTTGGAAGAC-TTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tacagagttaacattcacttgttggagagtgcgtgcgcttgtctctccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACCTTAG-CATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtacgtgcagggtaaaactatgttctggaaataggtaccctctccatatg Alignment from CESAR ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tacagagttaacattcacttgttggagagtgcgtgcgcttgtctctccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACCTTAGCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtacgtgcagggtaaaactatgttctggaaataggtaccctctccatatg Alignment from Spaln_aa2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tacagagttaacattcacttgttggagagtgcgtgcgcttgtctctccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACCTTAGCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtacgtgcagggtaaaactatgttctggaaataggtaccctctccatatg Alignment from Spaln_nt2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tacagagttaacattcacttgttggagagtgcgtgcgcttgtctctccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACCTTAGCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtacgtgcagggtaaaactatgttctggaaataggtaccctctccatatg Alignment from Pairagon ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tacagagttaacattcacttgttggagagtgcgtgcgcttgtctctccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACCTTAGCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtacgtgcagggtaaaactatgttctggaaataggtaccctctccatatg Alignment from Exonerate_protein2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tacagagttaacattcacttgttggagagtgcgtgcgcttgtctctccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACCTTAGCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtacgtgcagggtaaaactatgttctggaaataggtaccctctccatatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tacagagttaacattcacttgttggagagtgcgtgcgcttgtctctccagATCATTCAACAGCATCAAGAGTGGTTGGAAGACCTTAGCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtacgtgcagggtaaaactatgttctggaaataggtaccctctccatatg #### Btrc_ID9458_8 --> 0 - 0 Original Alignment ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGC-CTTCGAGACAACACCATCAAG acaatgggtagttagaatgttttcattgaatatttggtcttctacttcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTTTATTGTTTACAGTATGACGATCAGAAGATAGTCAGTGGCCCTTCGAG-CAACACCATCAAGgtgagtgaggctacttctgtggtgaagcaaacttgcatagagtagtgtat Alignment from CESAR ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagaatgttttcattgaatatttggtcttctacttcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTTTATTGTTTACAGTATGACGATCAGAAGATAGTCAGTGGCCCTTCGAGCAACACCATCAAGgtgagtgaggctacttctgtggtgaagcaaacttgcatagagtagtgtat Alignment from Spaln_aa2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagaatgttttcattgaatatttggtcttctacttcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTTTATTGTTTACAGTATGACGATCAGAAGATAGTCAGTGGCCCTTCGAGCAACACCATCAAGgtgagtgaggctacttctgtggtgaagcaaacttgcatagagtagtgtat Alignment from Spaln_nt2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagaatgttttcattgaatatttggtcttctacttcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTTTATTGTTTACAGTATGACGATCAGAAGATAGTCAGTGGCCCTTCGAGCAACACCATCAAGgtgagtgaggctacttctgtggtgaagcaaacttgcatagagtagtgtat Alignment from Pairagon ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGG-CCTTCGAGACAACACCATCAAG acaatgggtagttagaatgttttcattgaatatttggtcttctacttcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTTTATTGTTTACAGTATGACGATCAGAAGATAGTCAGTGGCCCTTCGAG-CAACACCATCAAGgtgagtgaggctacttctgtggtgaagcaaacttgcatagagtagtgtat Alignment from Exonerate_protein2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagaatgttttcattgaatatttggtcttctacttcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTTTATTGTTTACAGTATGACGATCAGAAGATAGTCAGTGGCCCTTCGAGCAACACCATCAAGgtgagtgaggctacttctgtggtgaagcaaacttgcatagagtagtgtat Alignment from Exonerate_coding2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAGATCTGGGATAAAAGCACACTG acaatgggtagttagaatgttttcattgaatatttggtcttctacttcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTTTATTGTTTACAGTATGACGATCAGAAGATAGTCAGTGGCCCTTCGAGCAACACCATCAAGGTGAGTGAGGCTACTTCTGTGgtgaagcaaacttgcatagagtagtgtat Alignment from GeneWise ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagaatgttttcattgaatatttggtcttctacttcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTTTATTGTTTACAGTATGACGATCAGAAGATAGTCAGTGGCCCTTCGAGCAACACCATCAAGgtgagtgaggctacttctgtggtgaagcaaacttgcatagagtagtgtat #### Cabp2_ID287_2 --> 0 - 0 Original Alignment GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGC-ATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCTGCATGCCATTTTCCTGC-ACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from CESAR GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCTGCATGCCATTTTCCTGCACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Spaln_aa2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCTGCATGCCATTTTCCTGCACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Spaln_nt2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGC-ATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCTGCATGCCATTTTCCTGC-ACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Pairagon GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCTGCATGCCATTTTCCTGCACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Exonerate_protein2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCTGCATGCCATTTTCCTGCACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Exonerate_coding2genome catattgacaaatgtatgtgggcattggttttggaactctgtctttctaggtccgctggcaatggcctggatcccccttagggggctcactccccagcccaggtccaagaactgaggagcaggaggggtcacagggctactcagtccttggtagccttgtaggacctgcatgccattttcctgcacctagcatagctgctacccagcttgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from GeneWise GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCTGCATGCCATTTTCCTGCACCTAGCATAGCTGCTACCCAGCTT---------------------------GTTTgtacataatcccttgcata #### Cabp2_ID289_4 --> 2 - 1 Original Alignment agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAG-CTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa tcacccccttataacaactagggtgaaacaggaatcactttcttttgtagagCTGCAGATAGGCTTCCAGGAGTTCGACCGAGATAGGGATGGCTACATCGGGTACCGGGAGCCTGGGTG-CTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTagtgagtggttattctatcgcccagtgcacatagccctcaggcagatgtgt Alignment from CESAR agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa tcacccccttataacaactagggtgaaacaggaatcactttcttttgtagagCTGCAGATAGGCTTCCAGGAGTTCGACCGAGATAGGGATGGCTACATCGGGTACCGGGAGCCTGGGTGCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTagtgagtggttattctatcgcccagtgcacatagccctcaggcagatgtgt Alignment from Spaln_aa2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaactagggtgaaacaggaatcactttcttttgtagAGCTGCAGATAGGCTTCCAGGAGTTCGACCGAGATAGGGATGGCTACATCGGGTACCGGGAGCCTGGGTGCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttattctatcgcccagtgcacatagccctcaggcagatgtgt Alignment from Spaln_nt2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaactagggtgaaacaggaatcactttcttttgtagAGCTGCAGATAGGCTTCCAGGAGTTCGACCGAGATAGGGATGGCTACATCGGGTACCGGGAGCCTGGGTGCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttattctatcgcccagtgcacatagccctcaggcagatgtgt Alignment from Pairagon AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAG-CTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaactagggtgaaacaggaatcactttcttttgtagAGCTGCAGATAGGCTTCCAGGAGTTCGACCGAGATAGGGATGGCTACATCGGGTACCGGGAGCCTGGGTG-CTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttattctatcgcccagtgcacatagccctcaggcagatgtgt Alignment from Exonerate_protein2genome GAGAGCTGAGACCAGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGAC------GGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaaCTAGGGTGAAACAGGAATCACTTTCTTTTGTAGAGCTGCAGATAGGCTTCCAGGAGTTCGACCGAGATAGGGATGGCTACATCGGGTACCGGGAGCCTGGGTGCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttattctatcgcccagtgcacatagccctcaggcagatgtgt Alignment from Exonerate_coding2genome GAGAGCTGAGACCAGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGAC------GGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaaCTAGGGTGAAACAGGAATCACTTTCTTTTGTAGAGCTGCAGATAGGCTTCCAGGAGTTCGACCGAGATAGGGATGGCTACATCGGGTACCGGGAGCCTGGGTGCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttattctatcgcccagtgcacatagccctcaggcagatgtgt Alignment from GeneWise GATCGAGAGCTGAGACCAGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA aacaactagggtgaaacagGAATCACTT------------TCTTTTGTAGAGCTGCAGATAGGCTTCCAGGAGTTCGACCGAGATAGGGATGGCTACATCGGGTACCGGGAGCCTGGGTGCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttattctatcgcccagtgcacatagccctcaggcagatgtgt #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACAGACCTG-GATGGTGTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagggTTTTCTAAACTACTAGACCGAGGCCTACGATGGTG-TGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagggTTTTCTAAACTACTAGACCGAGGCCTACGATGGTGTGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagGGTTTTCTAAACTACTAGACCGAGGCCTACGATGGTGTGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTG-GATGGTGTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagGGTTTTCTAAACTACTAGACCGAGGCCTACGATGGTG-TGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGACCTG-GATGGTGTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagGGTTTTCTAAACTACTAGACCGAGGCCTACGATGGTG-TGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagGGTTTTCTAAACTACTAGACCGAGGCCTACGATGGTGTGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Exonerate_coding2genome aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagggttttctaaactactagaccgaggcctacgatggtgtgttacctttgatctctttagggtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from GeneWise aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagggttttctaaactactagaccgaggcctacgatggtgtgttacctttgatctctttagggtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAAC-GGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATCGGGAAGT-AGGGCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATCGGGAAGTAGGGCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATCGGGAAGTAGGGCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Spaln_nt2Genome CGAGATGGCAA-CGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATCGGGAAG-TAGGGCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATCGGGAAGTAGGGCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATCGGGAAGTAGGGCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Exonerate_coding2genome tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagcgagacggaaatcgggaagtagggctggtggaattcaacatcctatggaaccatatccgaaattatctggtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATCGGGAAGTAGGGCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt #### Capn1_ID1369_7 --> 0 - 2 Original Alignment GTAACTTACCAGGGCCAGCGG-GTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGACGTGAACCTTA-TCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACaggtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from CESAR GTAACTTACCAGGGCCAGCGG-GTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGACGTGAACCTTA-TCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACaggtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Spaln_aa2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGACGTGAACCTTATCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Spaln_nt2Genome GTAACTTACCAGGGCCAGCGG-GTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGACGTGAACCTTAT-CGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Pairagon GTAACTTACCAGGGCCAGCGG-GTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGACGTGAACCTTAT-CGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Exonerate_protein2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGACGTGAACCTTATCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Exonerate_coding2genome ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacaggtaacctatcagggcccacgacgtgaaccttatcgtatgtggaattcctggggtccagtagagtggagaggtccttggagtgacaggtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from GeneWise GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGACGTGAACCTTATCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAACCCCCAGTTCATCGTGGAT-GGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACCGGAGCCACCC-AACAGACATCTGCCAGGGAGCACTAggtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from CESAR GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACCGGAGCCACCCAACAGACATCTGCCAGGGAGCACTAggtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACCGGAGCCACCCAACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACCGGAGCCACCCAACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Pairagon GAACTGATGTCAAACCCCCAGTTCATCGTGGA-TGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACCGGAGCCACCC-AACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACCGGAGCCACCCAACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Exonerate_coding2genome tttagaggcacatcaaagggggcccatgcccttcatttctcatttcataggaattgatgtcaaacccccaattcattgtagaccggagccacccaacagacatctgccagggagcactaggtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACCGGAGCCACCCAACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCA-TTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCACTTGC-TCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAggtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCACTTGCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAggtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCACTTGCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCACTTGCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCACTTGCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCACTTGCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCACTTGCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAGGCGGT-- gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCACTTGCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGGTAGCCTgtaatgtcaactctaaaccccaactgcctcaattagatgcatt #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATG-AAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgcttgttgatttcattgctttgcctgaatgtttctgtcttgccatctaggaAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGCAAGGTGGCAA-TCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGCTGTGAGTTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTCACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaccctcccagaaagtattcctaaatgtgtataccctttcatg Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgcttgttgatttcattgctttgcctgaatgtttctgtcttgccatctaggaAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGCAAGGTGGCAATCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGCTGTGAGTTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTCACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaccctcccagaaagtattcctaaatgtgtataccctttcatg Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgcttgttgatttcattgctttgcctgaatgtttctgtcttgccatctagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGCAAGGTGGCAATCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGCTGTGAGTTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTCACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaccctcccagaaagtattcctaaatgtgtataccctttcatg Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATG-AAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgcttgttgatttcattgctttgcctgaatgtttctgtcttgccatctagGAAATATGCTCCTCTGCCTGT---CTGCCTGGCTAATGCAAGGTGGCAA-TCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGCTGTGAGTTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTCACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaccctcccagaaagtattcctaaatgtgtataccctttcatg Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATG-AAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgcttgttgatttcattgctttgcctgaatgtttctgtcttgccatctagGAAATATGCTCCTCTGCCTGT---CTGCCTGGCTAATGCAAGGTGGCAA-TCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGCTGTGAGTTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTCACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaccctcccagaaagtattcctaaatgtgtataccctttcatg Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgcttgttgatttcattgctttgcctgaatgtttctgtcttgccatctagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGCAAGGTGGCAATCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGCTGTGAGTTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTCACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaccctcccagaaagtattcctaaatgtgtataccctttcatg Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgcttgttgatttcattgctttgcctgaatgtttctgtcttgccatctagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGCAAGGTGGCAATCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGCTGTGAGTTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTCACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaccctcccagaaagtattcctaaatgtgtataccctttcatg Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgcttgttgatttcattgctttgcctgaatgtttctgtcttgccatctagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGCAAGGTGGCAATCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGCTGTGAGTTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTCACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaccctcccagaaagtattcctaaatgtgtataccctttcatg #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTG-GAGGGTGGGGTCCAGAGCCCTg cacatacagacatggaggataggacagagccatgtaactttcttttccaggcTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGCGAGGGTG-GGTCCAAAGCCCTggtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg cacatacagacatggaggataggacagagccatgtaactttcttttccaggcTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGCGAGGGTGGGTCCAAAGCCCTggtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGCGAGGGTGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTG-GAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGCGAGGGT-GGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTG-GAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGCGAGGGT-GGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGCGAGGGTGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGCGAGGGTGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGCGAGGGTGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCC-ATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagtATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCACATCACAG-CATCCTCACCCTCATGTTTACCTGCCACtgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagtATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCACATCACAGCATCCTCACCCTCATGTTTACCTGCCACtgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCACATCACAGCATCCTCACCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATC-CATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCACATCACAG-CATCCTCACCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATC-CATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCACATCACAG-CATCCTCACCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCACATCACAGCATCCTCACCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCACATCACAGCATCCTCACCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCACATCACAGCATCCTCACCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg #### Cbwd1_ID5353_14 --> 0 - 1 Original Alignment GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCG-GAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCACGCAAGAG-ATGTCAGCTAGTTTTCATTggtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from CESAR GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCACGCAAGAGATGTCAGCTAGTTTTCATTggtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Spaln_aa2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCACGCAAGAGATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Spaln_nt2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCG-GAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCACGCAAGAG-ATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Pairagon GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGC-----GGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCACGCAAGAGA-----TGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Exonerate_protein2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCACGCAAGAGATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Exonerate_coding2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCACGCAAGAGATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from GeneWise GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCACGCAAGAGATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGC-CCCCTGGGGGCACCCAGTACCCACAGCAAAg gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagggTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAGC---ACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCCTTG-GGCACTGAGTACCTACAGCAAAggtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagggTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAGC---ACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCCTTGGGCACTGAGTACCTACAGCAAAggtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAGC---ACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCCTTGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAG---CACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCCTTGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAG---CACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCCTTGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCA---AGCACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCCTTGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Exonerate_coding2genome gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagggtcatcatcaccagcacccatgcaccaaattgagagctctctttgcttgggagatgagaccctagctggtgggcagcgacggagtctcagttctcagttccctgttggacgaagtccagcatcattcagtccaagcacatcacggcaatggttcaaacagcaaaggccaggccccccttgggcactgagtacctacagcaaaggtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCA---AGCACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCCTTGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGC-AGGGAGGCAGATGGGACAg cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttaggAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCCAGGG-GGTTGATGGGACAggtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttaggAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCCAGGGGGTTGATGGGACAggtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCCAGGGGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCCAGGGGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCCAGGGGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCCAGGGGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGG-CCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGG-GGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCCAGGGGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCCAGGGGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAG-GCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAA-TCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACctgtgagtccacttagggccaggttaagtgcctcccctgtgccatcccaggG Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAATCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACctgtgagtccacttagggccaggttaaggctgacgggtggtcccctccaggG Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAATCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagtgcctcccctgtgccatcccagGG Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAATCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagtgcctcccctgtgccatcccagGG Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAG---------------AACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGT---------------GAAGCGCTTTAATCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagtgcctcccctgtgccatcccagGG Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAATCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagtgcctcccctgtgccatcccagGG Alignment from Exonerate_coding2genome TTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCA---GCGAGAGTACCTGG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagcttttaacacagcttcatacagtacaaaaagaggagaataggcagcttttagcagAGGTGAAGCGCTTTAATCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGTGACCCTCTGCACCGTGAGCAGCCAGAATACCTGTGAGTCCACTTAGGGCCAGGTTAAGTGCCTCCCCTGTGCCATCCCAGGG Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAATCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagtgcctcccctgtgccatcccagGG #### Ccdc88b_ID1829_20 --> 1 - 2 Original Alignment gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATG-CAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgcgccaatggtctgttgtgctcgttttgttttgtagaCGTGGGCAGTTGCATGCCCAGCGGGCAAATGTTGAGGCTCAAGATGTAGCCCTACTGGCAGAA---GAACAATTGATGCCAGGATG-GCAGTGGCAGTGTGGGCTGGATGAGGAGCTGCGCAGGCTCCATAATGAACATCAAaggtaagtttgttagctcaggcctattccccccccctggcatagcattctca Alignment from CESAR gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgcgccaatggtctgttgtgctcgttttgttttgtagaCGTGGGCAGTTGCATGCCCAGCGGGCAAATGTTGAGGCTCAAGATGTAGCCCTACTGGCAGAA---GAACAATTGATGCCAGGATGGCAGTGGCAGTGTGGGCTGGATGAGGAGCTGCGCAGGCTCCATAATGAACATCAAaggtaagtttgttagctcaggcctattccccccccctggcatagcattctca Alignment from Spaln_aa2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgcgccaatggtctgttgtgctcgttttgttttgtagACGTGGGCAGTTGCATGCCCAGCGGGCAAATGTTGAGGCTCAAGATGTAGCCCTACTGGCAGAA---GAACAATTGATGCCAGGATGGCAGTGGCAGTGTGGGCTGGATGAGGAGCTGCGCAGGCTCCATAATGAACATCAAAGgtaagtttgttagctcaggcctattccccccccctggcatagcattctca Alignment from Spaln_nt2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGC-AGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgcgccaatggtctgttgtgctcgttttgttttgtagACGTGGGCAGTTGCATGCCCAGCGGGCAAATGTTGAGGCTCAAGATGTAGCCCTACTGGCAGA---AGAACAATTGATGCCAGGATGG-CAGTGGCAGTGTGGGCTGGATGAGGAGCTGCGCAGGCTCCATAATGAACATCAAAGgtaagtttgttagctcaggcctattccccccccctggcatagcattctca Alignment from Pairagon GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGA------------GCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgcgccaatggtctgttgtgctcgttttgttttgtagACGTGGGCAGTTGCATGCCCAGCGGGCAAATGTTGAGGCTCAAGATGTAGCCCTACTGGCAGAAGAACAATTGATGC--------------CAGGATGG-CAGTGGCAGTGTGGGCTGGATGAGGAGCTGCGCAGGCTCCATAATGAACATCAAAGgtaagtttgttagctcaggcctattccccccccctggcatagcattctca Alignment from Exonerate_protein2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgcgccaatggtctgttgtgctcgttttgttttgtagACGTGGGCAGTTGCATGCCCAGCGGGCAAATGTTGAGGCTCAAGATGTAGCCCTACTGGCAGAA---GAACAATTGATGCCAGGATGGCAGTGGCAGTGTGGGCTGGATGAGGAGCTGCGCAGGCTCCATAATGAACATCAAAGgtaagtttgttagctcaggcctattccccccccctggcatagcattctca Alignment from Exonerate_coding2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgcgccaatggtctgttgtgctcgttttgttttgtagACGTGGGCAGTTGCATGCCCAGCGGGCAAATGTTGAGGCTCAAGATGTAGCCCTACTGGCAGAA---GAACAATTGATGCCAGGATGGCAGTGGCAGTGTGGGCTGGATGAGGAGCTGCGCAGGCTCCATAATGAACATCAAAGgtaagtttgttagctcaggcctattccccccccctggcatagcattctca Alignment from GeneWise GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgcgccaatggtctgttgtgctcgttttgttttgtagACGTGGGCAGTTGCATGCCCAGCGGGCAAATGTTGAGGCTCAAGATGTAGCCCTACTGGCAGAA---GAACAATTGATGCCAGGATGGCAGTGGCAGTGTGGGCTGGATGAGGAGCTGCGCAGGCTCCATAATGAACATCAAAGgtaagtttgttagctcaggcctattccccccccctggcatagcattctca #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAG-AATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTT---GAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGCAACGGGC-GCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGCAACGGGCGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGCAACGGGCGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGCAACGGGCGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACT----GGGGC---GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG----------CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGCAACGGGCGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Exonerate_protein2genome agatcgatgtggagaacaactacctgtttacctccattttttttcctgagctacatcagtgcccggtgcttgaaggggcacggcgagatggtccttgggctgtggagacacagcaacgggcgctcattgtagtagagcaaaatgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Exonerate_coding2genome agatcgatgtggagaacaactacctgtttacctccattttttttcctgagctacatcagtgcccggtgcttgaaggggcacggcgagatggtccttgggctgtggagacacagcaacgggcgctcattgtagtagagcaaaatgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT-------------------------------------------------- agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGCAACGGGCGCTCATTGTAGTAGAGCAAAATGTGAGTAAGAAGGTGGGGGCTTACCCTAGAGGTAATAGGGCTCACAACAT #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGG-GAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagcaTCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGCGAAAATCGGG-GCTTCGAGGTCAA---CATATG------GCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagcaTCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGCGAAAATCGGGGCTTCGAGGTCAA---CATATG------GCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGCGAAAATCGGGGCTTCGAGGTCAA---CATATG------GCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGCGAAAATCGGGGCTTCGAGGTCA---ACATAT------GGCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGG-GAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGCGAAAATCGGG-GCTTCGAGGTCAA---------CATATGGCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGCGAAAATCGGGGCTTCGAGGTCAA---------CATATGGCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGCGAAAATCGGGGCTTCGAGGTCAA---------CATATGGCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGCGAAAATCGGGGCTTCGAGGTCAACATATG---------GCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGG-CATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg gggcctaatggacagacagctccgacacatgtatatttttttatttgtagGACCTGGACTCACTGCGGCCACC-GTTGGAACAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGggtgagtcaggtcttgtgtaacagacaggatttggcaaggaaggcaacctt Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg gggcctaatggacagacagctccgacacatgtatatttttttatttgtagGACCTGGACTCACTGCGGCCACCGTTGGAACAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGggtgagtcaggtcttgtgtaacagacaggatttggcaaggaaggcaacctt Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG gggcctaatggacagacagctccgacacatgtatatttttttatttgtagGACCTGGACTCACTGCGGCCACCGTTGGAACAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagtcaggtcttgtgtaacagacaggatttggcaaggaaggcaacctt Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG gggcctaatggacagacagctccgacacatgtatatttttttatttgtagGACCTGGACTCACTGCGGCCACCGTTGGAACAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagtcaggtcttgtgtaacagacaggatttggcaaggaaggcaacctt Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG gggcctaatggacagacagctccgacacatgtatatttttttatttgtagGACCTGGACTCACTGCGGCCACCGTTGGAACAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagtcaggtcttgtgtaacagacaggatttggcaaggaaggcaacctt Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG gggcctaatggacagacagctccgacacatgtatatttttttatttgtagGACCTGGACTCACTGCGGCCACCGTTGGAACAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagtcaggtcttgtgtaacagacaggatttggcaaggaaggcaacctt Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG gggcctaatggacagacagctccgacacatgtatatttttttatttgtagGACCTGGACTCACTGCGGCCACCGTTGGAACAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagtcaggtcttgtgtaacagacaggatttggcaaggaaggcaacctt Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG gggcctaatggacagacagctccgacacatgtatatttttttatttgtagGACCTGGACTCACTGCGGCCACCGTTGGAACAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagtcaggtcttgtgtaacagacaggatttggcaaggaaggcaacctt #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAG-GAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAGAA---GAGGCAGGTCACCTGCCCCGCCTGCAGCGAAGATCTCC-GCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTA---GAAGAGGCAGGTCACCTGCCCCGCCTGCAGCGAAGATCTCCGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAGAAGAG---GCAGGTCACCTGCCCCGCCTGCAGCGAAGATCTCCGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAG-GAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATT---AGAAGAGGCAGGTCACCTGCCCCGCCTGCAGCGAAGATCT-CCGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAG-GAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATT---AGAAGAGGCAGGTCACCTGCCCCGCCTGCAGCGAAGATCT-CCGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTA---GAAGAGGCAGGTCACCTGCCCCGCCTGCAGCGAAGATCTCCGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Exonerate_coding2genome ccgttaccctttgtcccctagctcactgctttctctttctttcccattagactcaggcattgtctgcccaagcaaagtgcaccgaactctgccgtgaagaagcagaggcattagaagaggcaggtcacctgccccgcctgcagcgaagatctccgcgatgtcgtgagaagcttcaggcagcagaagtcttcaagggtcatttggaagtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAGAAGAG---GCAGGTCACCTGCCCCGCCTGCAGCGAAGATCTCCGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAACTGCTGGACTCC-CAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggatgggctcttccagttggatgaactccctgtcaatgtttttcttaaagaGAAGAGAGAGCTGAACAGCTATTAGACTCCCCATGCAG-GGTCCAG---TTGGATTCTGAAATTCATAGACTTCGCCAAGAGgtaatttccaacttccttcacttatgcaggtcccaaaatactccatattt Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggatgggctcttccagttggatgaactccctgtcaatgtttttcttaaagaGAAGAGAGAGCTGAACAGCTATTAGACTCCCCATGCAGGGTCCAG---TTGGATTCTGAAATTCATAGACTTCGCCAAGAGgtaatttccaacttccttcacttatgcaggtcccaaaatactccatattt Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggatgggctcttccagttggatgaactccctgtcaatgtttttcttaaagAGAAGAGAGAGCTGAACAGCTATTAGACTCCCCATGCAGGGTCCAG---TTGGATTCTGAAATTCATAGACTTCGCCAAGAGgtaatttccaacttccttcacttatgcaggtcccaaaatactccatattt Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggatgggctcttccagttggatgaactccctgtcaatgtttttcttaaagAGAAGAGAGAGCTGAACAGCTATTAGACTCCCCATGCAGGGTCCAG---TTGGATTCTGAAATTCATAGACTTCGCCAAGAGgtaatttccaacttccttcacttatgcaggtcccaaaatactccatattt Alignment from Pairagon GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggatgggctcttccagttggatgaactccctgtcaatgtttttcttaaagagaagagagagctgaacagctattagactccccatgcagggtccag-------------------------------------------------TTGGATTCTGAAATTCATAGACTTCGCCAAGAGgtaatttccaacttccttcacttatgcaggtcccaaaatactccatattt Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggatgggctcttccagttggatgaactccctgtcaatgtttttcttaaagAGAAGAGAGAGCTGAACAGCTATTAGACTCCCCATGCAGGGTCCAG---TTGGATTCTGAAATTCATAGACTTCGCCAAGAGgtaatttccaacttccttcacttatgcaggtcccaaaatactccatattt Alignment from Exonerate_coding2genome ggatgggctcttccagttggatgaactccctgtcaatgtttttcttaaagagaagagagagctgaacagctattagactccccatgcagggtccagttggattctgaaattcatagacttcgccaagaggtaatttccaacttccttcacttatgcaggtcccaaaatactccatattt Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggatgggctcttccagttggatgaactccctgtcaatgtttttcttaaagAGAAGAGAGAGCTGAACAGCTATTAGACTCCCCATGCAGGGTCCAG---TTGGATTCTGAAATTCATAGACTTCGCCAAGAGgtaatttccaacttccttcacttatgcaggtcccaaaatactccatattt #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAG-ACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGT-TGAACCCTTCTCAggtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTTGAACCCTTCTCAggtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAG----ACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACA----GGGTTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Exonerate_coding2genome acccagtagcacctagcatggatacatttggcttctccttgaccttgcaggaggagctacagcttttaatcttatcagcaccaccagacctccagccctacagggttgaacccttctcaggtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc #### Cd274_ID6274_5 --> 2 - 1 Original Alignment tgAGAATGCTAGATGTGGAG-AAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATg agtttgtccttactaaaattataactcatcattgtcctgtgtccttgtagtgAGGATGCTGGATGTGGAGCAAATGCA-TGTTGAGCATACAAGCTCAAAAAACCGGAATggtagcgggatgaatgtaaggaaattttggtgaccattatggaccagatta Alignment from CESAR tgAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATg agtttgtccttactaaaattataactcatcattgtcctgtgtccttgtagtgAGGATGCTGGATGTGGAGCAAATGCATGTTGAGCATACAAGCTCAAAAAACCGGAATggtagcgggatgaatgtaaggaaattttggtgaccattatggaccagatta Alignment from Spaln_aa2Genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATG agtttgtccttactaaaattataactcatcattgtcctgtgtccttgtagTGAGGATGCTGGATGTGGAGCAAATGCATGTTGAGCATACAAGCTCAAAAAACCGGAATGgtagcgggatgaatgtaaggaaattttggtgaccattatggaccagatta Alignment from Spaln_nt2Genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATG agtttgtccttactaaaattataactcatcattgtcctgtgtccttgtagTGAGGATGCTGGATGTGGAGCAAATGCATGTTGAGCATACAAGCTCAAAAAACCGGAATGgtagcgggatgaatgtaaggaaattttggtgaccattatggaccagatta Alignment from Pairagon TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATG agtttgtccttactaaaattataactcatcattgtcctgtgtccttgtagTGAGGATGCTGGATGTGGAGCAAATGCATGTTGAGCATACAAGCTCAAAAAACCGGAATGgtagcgggatgaatgtaaggaaattttggtgaccattatggaccagatta Alignment from Exonerate_protein2genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAAT agtttgtccttactaaaattataactcatcattgtcctgtgtccttgtagTGAGGATGCTGGATGTGGAGCAAATGCATGTTGAGCATACAAGCTCAAAAAACCGGAATggtagcgggatgaatgtaaggaaattttggtgaccattatggaccagatta Alignment from Exonerate_coding2genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAAT agtttgtccttactaaaattataactcatcattgtcctgtgtccttgtagTGAGGATGCTGGATGTGGAGCAAATGCATGTTGAGCATACAAGCTCAAAAAACCGGAATggtagcgggatgaatgtaaggaaattttggtgaccattatggaccagatta Alignment from GeneWise TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATGATACACAATTCGAGGAGACG agtttgtccttactaaaattataactcatcattgtcctgtgtccttgtagTGAGGATGCTGGATGTGGAGCAAATGCATGTTGAGCATACAAGCTCAAAAAACCGGAATGGTAGCGGGATGAATGTAAGGaaattttggtgaccattatggaccagatta #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAG-ATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggtccttctgtgagtccagtcgcatttttctgttttcctctgcttcagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGCATCT-TGCAATGAATATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgggttggcacaaatgtaaaatctagccttctccctgcctattctcaac Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggtccttctgtgagtccagtcgcatttttctgttttcctctgcttcagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGCATCTTGCAATGAATATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgggttggcacaaatgtaaaatctagcctcccacctggtttcctcttgc Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggtccttctgtgagtccagtcgcatttttctgttttcctctgcttcagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGCATCTTGCAATGAATATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgggttggcacaaatgtaaaatctagccttctccctgcctattctcaac Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggtccttctgtgagtccagtcgcatttttctgttttcctctgcttcagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGCATCTTGCAATGAATATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgggttggcacaaatgtaaaatctagccttctccctgcctattctcaac Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggtccttctgtgagtccagtcgcatttttctgttttcctctgcttcagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGCATCTTGCAATGAATATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgggttggcacaaatgtaaaatctagccttctccctgcctattctcaac Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggtccttctgtgagtccagtcgcatttttctgttttcctctgcttcagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGCATCTTGCAATGAATATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgggttggcacaaatgtaaaatctagccttctccctgcctattctcaac Alignment from Exonerate_coding2genome ttggtccttctgtgagtccagtcgcatttttctgttttcctctgcttcaggttattgtggtgaggcagaggggaagtggccagcatcttgcaatgaatatgtttcataagtgggaaatgctgaagagggctgaggtgggttggcacaaatgtaaaatctagccttctccctgcctattctcaac Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggtccttctgtgagtccagtcgcatttttctgttttcctctgcttcagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGCATCTTGCAATGAATATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgggttggcacaaatgtaaaatctagccttctccctgcctattctcaac #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCAC-TACGCCTTCCAGGATGAAGAGTACCTG gaggtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCAT-CCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggttggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gaggtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCA-CTACGCCTTCCAGGATGAAGAGTACCTG gaggtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTAC-TCATCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gaggtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gaggtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gaggtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gaggtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATCTACTCATCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt #### Cdc42bpg_ID1575_5 --> 0 - 2 Original Alignment TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTC---ACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTT-CTGGCCATCCACTCACTGCACCAGCTGGGC------------TATGTCCACag ctcaaaaactattggatatggtagagggtttgatatgtatttccacacagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAAATTACTGAGCTGCTTTGAAGACCGGCTCCCACCTGAGCTGGCTCAGATCTATTTGGCTGAGATGGTGCTTGGCTA-TCACTCCCTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACaggtccgcaagataggggtgtgttgttgaggtactgggatcattctttttgt Alignment from CESAR TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACG---CTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCAC------------ag ctcaaaaactattggatatggtagagggtttgatatgtatttccacacagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAAATTACTGAGCTGCTTTGAAGACCGGCTCCCACCTGAGCTGGCTCAGATCTATTTGGCTGAGATGGTGCTTGGCTATCACTCCCTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACaggtccgcaagataggggtgtgttgttgaggtactgggatcattctttttgt Alignment from Spaln_aa2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTC---ACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAGG----------- ctcaaaaactattggatatggtagagggtttgatatgtatttccacacagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAAATTACTGAGCTGCTTTGAAGACCGGCTCCCACCTGAGCTGGCTCAGATCTATTTGGCTGAGATGGTGCTTGGCTATCACTCCCTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGgtccgcaagataggggtgtgttgttgaggtactgggatcattctttttgt Alignment from Spaln_nt2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGC---TGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACA ctcaaaaactattggatatggtagagggtttgatatgtatttccacacagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAAATTACTGAGCTGCTTTGAAGACCGGCTCCCACCTGAGCTGGCTCAGATCTATTTGGCTGAGATGGTGCTTGGCTATCACTCCCTGCACCAGCTAGGCTATGCCCACAgctatgcccacaggtccgcaagataggggtgtgttgttgaggtactgggatcattctttttgt Alignment from Pairagon TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCT----------CACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG--------------------------- ctcaaaaactattggatatggtagagggtttgatatgtatttccacacagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAAATTAC-------TGAGCTGCTTTGAAGACCGGCTCCCACCTGAGCTGGCTCAGATCTATTTGGCTGAGATGGTGCTTGGCTATCACTCCCTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGGTCCGCAAGATAGGGgtgtgttgttgaggtactgggatcattctttttgt Alignment from Exonerate_protein2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTC---ACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctcaaaaactattggatatggtagagggtttgatatgtatttccacacagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAAATTACTGAGCTGCTTTGAAGACCGGCTCCCACCTGAGCTGGCTCAGATCTATTTGGCTGAGATGGTGCTTGGCTATCACTCCCTGCACCAGCTAGGCTATGCCCACAGctatgcccacaggtccgcaagataggggtgtgttgttgaggtactgggatcattctttttgt Alignment from Exonerate_coding2genome ctcaaaaactattggatatggtagagggtttgatatgtatttccacacagtacctgctgatggatttttatgctggtggtgatcttctaaaaaaattactgagctgctttgaagaccggctcccacctgagctggctcagatctatttggctgagatggtgcttggctatcactccctgcaccagctaggctatgcccacagctatgcccacaggtccgcaagataggggtgtgttgttgaggtactgggatcattctttttgt Alignment from GeneWise TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACG---CTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCAC------------AG ctcaaaaactattggatatggtagagggtttgatatgtatttccacacagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAAATTACTGAGCTGCTTTGAAGACCGGCTCCCACCTGAGCTGGCTCAGATCTATTTGGCTGAGATGGTGCTTGGCTATCACTCCCTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGgtccgcaagataggggtgtgttgttgaggtactgggatcattctttttgt #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAG-GAAGTACAGGTTCTTCAGGAGAAACTGGCAg atacatggttctgggtactacagtcatggcgatcttctgtgttctctcagagCATCTTCATGGTCCACTACAACCACAGGGGCTAGTACATCTTCATAAACGAGGTTC-GGTTCTTCAGGAGAAACTGACAggtaagtctggtcagctattagagttggctgggttccttgtcatgtcccag Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg atacatggttctgggtactacagtcatggcgatcttctgtgttctctcagagCATCTTCATGGTCCACTACAACCACAGGGGCTAGTACATCTTCATAAACGAGGTTCGGTTCTTCAGGAGAAACTGACAggtaagtctggtcagctattagagttggctgggttccttgtcatgtcccag Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG atacatggttctgggtactacagtcatggcgatcttctgtgttctctcagAGCATCTTCATGGTCCACTACAACCACAGGGGCTAGTACATCTTCATAAACGAGGTTCGGTTCTTCAGGAGAAACTGACAGgtaagtctggtcagctattagagttggctgggttccttgtcatgtcccag Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG atacatggttctgggtactacagtcatggcgatcttctgtgttctctcagAGCATCTTCATGGTCCACTACAACCACAGGGGCTAGTACATCTTCATAAACGAGGTTCGGTTCTTCAGGAGAAACTGACAGgtaagtctggtcagctattagagttggctgggttccttgtcatgtcccag Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACA------------------GGTTCTTCAGGAGAAACTGGCAG atacatggttctgggtactacagtcatggcgatcttctgtgttctctcagAGCATCTTCATGGTCCACTACAACCACAGGGGCT------------------AGTACATCTTCATAAACGAGGTTCGGTTCTTCAGGAGAAACTGACAGgtaagtctggtcagctattagagttggctgggttccttgtcatgtcccag Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG atacatggttctgggtactacagtcatggcgatcttctgtgttctctcagAGCATCTTCATGGTCCACTACAACCACAGGGGCTAGTACATCTTCATAAACGAGGTTCGGTTCTTCAGGAGAAACTGACAGgtaagtctggtcagctattagagttggctgggttccttgtcatgtcccag Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG atacatggttctgggtactacagtcatggcgatcttctgtgttctctcagAGCATCTTCATGGTCCACTACAACCACAGGGGCTAGTACATCTTCATAAACGAGGTTCGGTTCTTCAGGAGAAACTGACAGgtaagtctggtcagctattagagttggctgggttccttgtcatgtcccag Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG atacatggttctgggtactacagtcatggcgatcttctgtgttctctcagAGCATCTTCATGGTCCACTACAACCACAGGGGCTAGTACATCTTCATAAACGAGGTTCGGTTCTTCAGGAGAAACTGACAGgtaagtctggtcagctattagagttggctgggttccttgtcatgtcccag #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCA-CAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagagACTTTGAAAGACAGCAAGGCTTCTCTTGCACCAAG-TGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagagACTTTGAAAGACAGCAAGGCTTCTCTTGCACCAAGTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACCAAGTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACCAAGTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACCAAGTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACCAAGTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACCAAGTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACCAAGTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGA-GTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgagtttgctccgtgtcttttctgcatctcaacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAACGTGCAAG-TGCTGAATTGTGCCAAGCA---AACCGGCAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtgagttaagagacatccaaacttccatagatgtctttagatccatgtag Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgagtttgctccgtgtcttttctgcatctcaacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAACGTGCAAGTGCTGAATTGTGCCAAGCA---AACCGGCAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtgagttaagagacatccaaacttccatagatgtctttagatccatgtag Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgagtttgctccgtgtcttttctgcatctcaacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAACGTGCAAGTGCTGAATTGTGCCAAGCA---AACCGGCAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtgagttaagagacatccaaacttccatagatgtctttagatccatgtag Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGA-GTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgagtttgctccgtgtcttttctgcatctcaacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAACGTGCAAG-TGCTGAATTGTGCCAAGC---AAACCGGCAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtgagttaagagacatccaaacttccatagatgtctttagatccatgtag Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGA-GTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgagtttgctccgtgtcttttctgcatctcaacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAACGTGCAAG-TGCTGAATTGTGCCAAGC---AAACCGGCAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtgagttaagagacatccaaacttccatagatgtctttagatccatgtag Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgagtttgctccgtgtcttttctgcatctcaacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAACGTGCAAGTGCTGAATTGTGCCAAGCA---AACCGGCAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtgagttaagagacatccaaacttccatagatgtctttagatccatgtag Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgagtttgctccgtgtcttttctgcatctcaacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAACGTGCAAGTGCTGAATTGTGCCAAGCA---AACCGGCAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtgagttaagagacatccaaacttccatagatgtctttagatccatgtag Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgagtttgctccgtgtcttttctgcatctcaacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAACGTGCAAGTGCTGAATTGTGCCAAGCA---AACCGGCAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtgagttaagagacatccaaacttccatagatgtctttagatccatgtag #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAA-GAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAAACCCAAC-GAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAgggtatatgcatggtacttgctgtcaggaaggggcaaaatatttcttctgtg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAAACCCAACGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAgggtatatgcatggtacttgctgtcaggaaggggcaaaatacacccagtacc Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAAACCCAACGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatttcttctgtg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAAACCCAACGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatttcttctgtg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAA-GAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAAACCCAAC-GAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatttcttctgtg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAAACCCAACGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatttcttctgtg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAAACCCAACGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatttcttctgtg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAACGAAACCCAACGAGGAAGGAAGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatttcttctgtg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGA-TTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gtacttgctgtcaggaaggggcaaaatacacccagtaccctctttcccaggATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACAGGCAG-AAACCAGCAGCTGAGTCGAGAGCAGGAGTGGgtgagtatgaagtatgacaaagccaaggttgccgccagctggctgggtta Alignment from CESAR gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gtacttgctgtcaggaaggggcaaaatacacccagtaccctctttcccaggATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACAGGCAGAAACCAGCAGCTGAGTCGAGAGCAGGAGTGGgtgagtatgaagtatgacaaagccaaggttgccgccagctggctgggtta Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gtacttgctgtcaggaaggggcaaaatacacccagtaccctctttcccagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACAGGCAGAAACCAGCAGCTGAGTCGAGAGCAGGAGTGGgtgagtatgaagtatgacaaagccaaggttgccgccagctggctgggtta Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gtacttgctgtcaggaaggggcaaaatacacccagtaccctctttcccagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACAGGCAGAAACCAGCAGCTGAGTCGAGAGCAGGAGTGGgtgagtatgaagtatgacaaagccaaggttgccgccagctggctgggtta Alignment from Pairagon GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCC------------GATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gtacttgctgtcaggaaggggcaaaatacacccagtaccctctttcccagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACAGGCAG------------AAACCAGCAGCTGAGTCGAGAGCAGGAGTGGgtgagtatgaagtatgacaaagccaaggttgccgccagctggctgggtta Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gtacttgctgtcaggaaggggcaaaatacacccagtaccctctttcccagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACAGGCAGAAACCAGCAGCTGAGTCGAGAGCAGGAGTGGgtgagtatgaagtatgacaaagccaaggttgccgccagctggctgggtta Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gtacttgctgtcaggaaggggcaaaatacacccagtaccctctttcccagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACAGGCAGAAACCAGCAGCTGAGTCGAGAGCAGGAGTGGgtgagtatgaagtatgacaaagccaaggttgccgccagctggctgggtta Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gtacttgctgtcaggaaggggcaaaatacacccagtaccctctttcccagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACAGGCAGAAACCAGCAGCTGAGTCGAGAGCAGGAGTGGgtgagtatgaagtatgacaaagccaaggttgccgccagctggctgggtta #### Cdc42bpg_ID1590_20 --> 1 - 1 Original Alignment cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAG---CAGGAGGTG-GCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaatgtatgagccctcctgggtgttttatactttacctctttcagcCGCCTGCAGGAAGCTGAGACACAAAGTAAGACACTCCAGCAGCAGGAGGTGCGCTGTGC-AAGGGAAGAGCTTCAAGCTCGAGGACCAGGAggtaagaacccacttggatccaaccacaaggcctaacctgtggggaccaga Alignment from CESAR cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAG---CAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaatgtatgagccctcctgggtgttttatactttacctctttcagcCGCCTGCAGGAAGCTGAGACACAAAGTAAGACACTCCAGCAGCAGGAGGTGCGCTGTGCAAGGGAAGAGCTTCAAGCTCGAGGACCAGGAggtaagaacccacttggatccaaccacaaggcctaacctgtggggaccaga Alignment from Spaln_aa2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgttttatactttacctctttcagCCGCCTGCAGGAAGCTGAGACACAAAGTAAGACACTCCAGCAGCAGGAGGTGCGCTGTGCAAGGGAAGAGCTTCAAGCTCGAGGACCAGGAGgtaagaacccacttggatccaaccacaaggcctaacctgtggggaccaga Alignment from Spaln_nt2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGG---AGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgttttatactttacctctttcagCCGCCTGCAGGAAGCTGAGACACAAAGTAAGACACTCCAGCAGCAGGAGGTGCGCTGTGCAAGGGAAGAGCTTCAAGCTCGAGGACCAGGAGgtaagaacccacttggatccaaccacaaggcctaacctgtggggaccaga Alignment from Pairagon CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGC---CCTGCAGCAGGAGGTGGCTGAGCTCC---------GGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgttttatactttacctctttcagCCGCCTGCAGGAAGCTGAGACACAAAGTAAGACACTCCAGCAGCAGGAGGTG---------CGCTGTGCAAGGGAAGAGCTTCAAGCTCGAGGACCAGGAGgtaagaacccacttggatccaaccacaaggcctaacctgtggggaccaga Alignment from Exonerate_protein2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgttttatactttacctctttcagCCGCCTGCAGGAAGCTGAGACACAAAGTAAGACACTCCAGCAGCAGGAGGTGCGCTGTGCAAGGGAAGAGCTTCAAGCTCGAGGACCAGGAGgtaagaacccacttggatccaaccacaaggcctaacctgtggggaccaga Alignment from Exonerate_coding2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgttttatactttacctctttcagCCGCCTGCAGGAAGCTGAGACACAAAGTAAGACACTCCAGCAGCAGGAGGTGCGCTGTGCAAGGGAAGAGCTTCAAGCTCGAGGACCAGGAGgtaagaacccacttggatccaaccacaaggcctaacctgtggggaccaga Alignment from GeneWise CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgttttatactttacctctttcagCCGCCTGCAGGAAGCTGAGACACAAAGTAAGACACTCCAGCAGCAGGAGGTGCGCTGTGCAAGGGAAGAGCTTCAAGCTCGAGGACCAGGAGgtaagaacccacttggatccaaccacaaggcctaacctgtggggaccaga #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGG-CGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagaaAAAGACGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCCGTCAACTCT-CCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTaggtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from CESAR agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagaaAAAGACGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCCGTCAACTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTaggtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCCGTCAACTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGC-GCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGAC---AAACAGCCGGCCGTCAACT-CTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGT------TCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGACAAACA---------GCCGGCCGTCAACTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCCGTCAACTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCCGTCAACTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCCGTCAACTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCC-ACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttaggGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCCACCAACT-CATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttaggGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCCACCAACTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCCACCAACTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCCACCAACTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCCACCAACTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCCACCAACTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCCACCAACTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCCACCAACTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg #### Cdca5_ID1429_3 --> 0 - 0 Original Alignment ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATC-GTAGCTCATGCAGTAGAG cactgttttacgcctcccaaacagcacctttttgtttgtttgtttttcagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATACGTTG-CCATGCAGTTGAAgtaagtggttgagttggccactgagatgtccaaaaaggctctagctataa Alignment from CESAR ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactgttttacgcctcccaaacagcacctttttgtttgtttgtttttcagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATACGTTGCCATGCAGTTGAAgtaagtggttgagttggccactgagatgtccaaaaaggctctagctatat Alignment from Spaln_aa2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactgttttacgcctcccaaacagcacctttttgtttgtttgtttttcagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATACGTTGCCATGCAGTTGAAgtaagtggttgagttggccactgagatgtccaaaaaggctctagctataa Alignment from Spaln_nt2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGAT-CGTAGCTCATGCAGTAGAG cactgttttacgcctcccaaacagcacctttttgtttgtttgtttttcagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATACGTTGC-CATGCAGTTGAAgtaagtggttgagttggccactgagatgtccaaaaaggctctagctataa Alignment from Pairagon ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGAT-CGTAGCTCATGCAGTAGAG cactgttttacgcctcccaaacagcacctttttgtttgtttgtttttcagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATACGTTGC-CATGCAGTTGAAgtaagtggttgagttggccactgagatgtccaaaaaggctctagctataa Alignment from Exonerate_protein2genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactgttttacgcctcccaaacagcacctttttgtttgtttgtttttcagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATACGTTGCCATGCAGTTGAAgtaagtggttgagttggccactgagatgtccaaaaaggctctagctataa Alignment from Exonerate_coding2genome cactgttttacgcctcccaaacagcacctttttgtttgtttgtttttcagatgactcccactgtcccagttagaaaagccatcatcttgaaaaagatacgttgccatgcagttgaagtaagtggttgagttggccactgagatgtccaaaaaggctctagctataa Alignment from GeneWise ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactgttttacgcctcccaaacagcacctttttgtttgtttgtttttcagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATACGTTGCCATGCAGTTGAAgtaagtggttgagttggccactgagatgtccaaaaaggctctagctataa #### Cdk2ap2_ID298_2 --> 2 - 0 Original Alignment ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCA-GGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagctGGTAGTGTCCCATTACCATCGGGCTCAGTACCACGGGG-TGCTGCACCTTTCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from CESAR ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagctGGTAGTGTCCCATTACCATCGGGCTCAGTACCACGGGGTGCTGCACCTTTCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Spaln_aa2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCACGGGGTGCTGCACCTTTCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Spaln_nt2Genome CGGG-AGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCACGGGGTGCTGCACCTTTCAGACC---ATTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Pairagon CCCCGGTCCCTACAGCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacag---------------CTGGTAGTGTCCCATTACCATCGGGCTCAGTACCACGGGGTGCTGCACCTTTCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Exonerate_protein2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCACGGGGTGCTGCACCTTTCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Exonerate_coding2genome CCGGTCCCTACAGCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttCCCTCCTCAACAGCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCACGGGGTGCTGCACCTTTCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from GeneWise CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCACGGGGTGCTGCACCTTTCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt #### Chuk_ID8920_8 --> 1 - 2 Original Alignment gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAA-GTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag gctgaatggttcttggatgcatcaggcttttcctccctaccgtggggcaggCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAACGTTCGGT-TAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagtgatgctcagagtctttgggagtatgccccttatctattcatagt Alignment from CESAR gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag gctgaatggttcttggatgcatcaggcttttcctccctaccgtggggcaggCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAACGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagtgatgctcagagtctttgggagtatgccccttatctattcatagt Alignment from Spaln_aa2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gctgaatggttcttggatgcatcaggcttttcctccctaccgtggggcagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAACGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgctcagagtctttgggagtatgccccttatctattcatagt Alignment from Spaln_nt2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gctgaatggttcttggatgcatcaggcttttcctccctaccgtggggcagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAACGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgctcagagtctttgggagtatgccccttatctattcatagt Alignment from Pairagon GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gctgaatggttcttggatgcatcaggcttttcctccctaccgtggggcagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAACGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgctcagagtctttgggagtatgccccttatctattcatagt Alignment from Exonerate_protein2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gctgaatggttcttggatgcatcaggcttttcctccctaccgtggggcagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAACGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgctcagagtctttgggagtatgccccttatctattcatagt Alignment from Exonerate_coding2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gctgaatggttcttggatgcatcaggcttttcctccctaccgtggggcagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAACGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgctcagagtctttgggagtatgccccttatctattcatagt Alignment from GeneWise GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gctgaatggttcttggatgcatcaggcttttcctccctaccgtggggcagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAACGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgctcagagtctttgggagtatgccccttatctattcatagt #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCAT-CATCTGCAGCCATTTACCtg tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCCATC-ACAGCCATTTACCtggtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCCATCACAGCCATTTACCtggtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTT tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTgcatccatcacagccatttacctggtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAgctactgtggattattggagctttggtaccatggtctttgaatgtattgctggatataggccttttttgcatccatcacagccatttacctggtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCCATCACAGCCATTTACCTGgtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCCATCACAGCCATTTACCTGgtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCCATCACAGCCATTTACCTGgtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCCATCACAGCCATTTACCTGgtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata #### Chuk_ID8922_6 --> 0 - 0 Original Alignment ACAATACATAAAATAATT-GATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTCGATTTGGGGT-TGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from CESAR ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTCGATTTGGGGTTGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Spaln_aa2Genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTCGATTTGGGGTTGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Spaln_nt2Genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTCGATTTGGGGTTGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Pairagon ACAATACATAAAATAATT-GATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTCGATTTGGGGT-TGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Exonerate_protein2genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTCGATTTGGGGTTGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Exonerate_coding2genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTCGATTTGGGGTTGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from GeneWise ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTCGATTTGGGGTTGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg attcaaagatactatatgagccttgaaggaacccttttgctcccccacagccTATGGTATGATTCCAGGTCCACCCTGGC------CGAGATGTAGGGACCCCGGGCCCGCAAggtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from CESAR ccTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg attcaaagatactatatgagccttgaaggaacccttttgctcccccacagccTATGGTATGATTCCAGGTCCACCCTGGCCGA------GATGTAGGGACCCCGGGCCCGCAAggtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG attcaaagatactatatgagccttgaaggaacccttttgctcccccacagCCTATGGTATGATTCCAGGTCCACCCT-----GGCCGAGATGTAGGGACCCCGGGCCCGCAAGgtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG attcaaagatactatatgagccttgaaggaacccttttgctcccccacagCCTATGGTATGATTCCAGGTCCACCCTGGC-----CGAGATGTAGGGACCCCGGGCCCGCAAGgtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Pairagon CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG attcaaagatactatatgagccttgaaggaacccttttgctcccccacagCCTATGGTATGATTCCAGGTCCACCCTGGCC-----GAGATGTAGGGACCCCGGGCCCGCAAGgtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG attcaaagatactatatgagccttgaaggaacccttttgctcccccacagCCTATGGTATGATTCCAGGTCCACCCTGGCCGA------GATGTAGGGACCCCGGGCCCGCAAGgtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Exonerate_coding2genome attcaaagatactatatgagccttgaaggaacccttttgctcccccacagcctatggtatgattccaggtccaccctggccgagatgtagggaccccgggcccgcaaggtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from GeneWise attcaaagatactatatgagccttgaaggaacccttttgctcccccacagcctatggtatgattccaggtccaccctggccgagatgtagggaccccgggcccgcaaggtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGG-CCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCCACCAG-TCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACATACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAagtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCCACCAGTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACATACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAagtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCCACCAGTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACATACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCCACCAGTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACATACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCCACCAGTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACATACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCCACCAGTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACATACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Exonerate_coding2genome aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagccacgagtttgtcgtccaccccaggcccagcaggaccatcaggacccaccagtcctcgagggcctcctggggtttcgacagcctcgtctacatacgctgcggaaaacagtgataacttccgatgtgagctgattagttacctcacaagtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCCACCAGTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACATACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAG-CTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcaatgactctaagtatactttttttcttcatgctaggaAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCCTGAGCAAGC-TATTCTCAACTATATGTCAagtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcaatgactctaagtatactttttttcttcatgctaggaAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCCTGAGCAAGCTATTCTCAACTATATGTCAagtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCCTGAGCAAGCTATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGC-TGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAAGGGTCGCTACTGTC---------TGGAGAGCCTGAGCA-AGCTATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAG-CTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAAGGGTCGCTACTGTC---------TGGAGAGCCTGAGCAAGC-TATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCCTGAGCAAGCTATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Exonerate_coding2genome acatagattgggctcaatgactctaagtatactttttttcttcatgctaggaaatgatgtgtggcaagacctacgtcaaaatctagtaggtcctccgagtccttcagggccattagccatcagtggagaagggtcgctactgtctggagagcctgagcaagctattctcaactatatgtcaagtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCCTGAGCAAGCTATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTG-TCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagctTCAGGATACAGTGCTGGCTTGCTCCTCTG-TTCCTCATCAGAGGATATCTTGGCCATGCTACGAcgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagctTCAGGATACAGTGCTGGCTTGCTCCTCTGTTCCTCATCAGAGGATATCTTGGCCATGCTACGAcgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagCTTCAGGATACAGTGCTGGCTTGCTCCTCTGTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagCTTCAGGATACAGTGCTGGCTTGCTCCTCTGTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTG-TCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagCTTCAGGATACAGTGCTGGCTTGCTCCTCTG-TTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagCTTCAGGATACAGTGCTGGCTTGCTCCTCTGTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Exonerate_coding2genome gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagcttcaggatacagtgctggcttgctcctctgttcctcatcagaggatatcttggccatgctacgacgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagCTTCAGGATACAGTGCTGGCTTGCTCCTCTGTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat #### Col17a1_ID10287_35 --> 2 - 1 Original Alignment gtCCAGCTGGCCCTGCT-GGTCTCCCAGGACAACAAg tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcaggtCCAGCTGGCCCTGGTCGGTC-ACCAGGTGAACAAggtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from CESAR gtCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAg tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcaggtCCAGCTGGCCCTGGTCGGTCACCAGGTGAACAAggtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Spaln_aa2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTCGGTCACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Spaln_nt2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTCGGTCACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Pairagon GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTCGGTCACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Exonerate_protein2genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTCGGTCACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Exonerate_coding2genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTCGGTCACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from GeneWise GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTCGGTCACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATG-GGTCCCCCAGGACCTCCAGGGACGCCAg taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagaaGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGCGGTCCTCCTG-GCCTCCAGGGACACTGggtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from CESAR agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagaaGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGCGGTCCTCCTGGCCTCCAGGGACACTGggtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGCGGTCCTCCTGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATG-GGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGCGGTCCTCCTGG-CCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Pairagon AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGCGGTCCTCCTGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGCGGTCCTCCTGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Exonerate_coding2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGCGGTCCTCCTGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from GeneWise ------CCCGGCGCTCCCGGCAGAGTCATGACTTCAGAGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagCGTCACATGGCATGTCCCCACCCTATCCAACTTGCAGAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGCGGTCCTCCTGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat #### Col17a1_ID10300_22 --> 2 - 1 Original Alignment gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCT-GGAGAGAAAGGAGACAGAg cactattctgtgctcttgcatctttcttctccccgaattccctctggcaggaGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGG-GAAAGGAGACCAAggtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from CESAR gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg cactattctgtgctcttgcatctttcttctccccgaattccctctggcaggaGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGGAAAGGAGACCAAggtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Spaln_aa2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Spaln_nt2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Pairagon GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Exonerate_protein2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Exonerate_coding2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from GeneWise GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTC-ATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAAGTCCATTG-CAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAAGTCCATTGCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAAGTCCATTGCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAAGTCCATTGCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAAGTCCATTGCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAAGTCCATTGCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAAGTCCATTGCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAG-AGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag tggatactaatgaacatttctttgactgttctgttctttgtccctcacagGGTGATTCTAGTATTCGATACTTTGAGAACACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAACAGGGGTATGG-CAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCaggtaagcacaatcagtggttgtatatcagttacctcaatcttagcttgaaa Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag tggatactaatgaacatttctttgactgttctgttctttgtccctcacagGGTGATTCTAGTATTCGATACTTTGAGAACACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAACAGGGGTATGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCaggtaagcacaatcagtggttgtatatcagttacctcaatcttagcttgaaa Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG tggatactaatgaacatttctttgactgttctgttctttgtccctcacagGGTGATTCTAGTATTCGATACTTTGAGAACACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAACAGGGGTATGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagcacaatcagtggttgtatatcagttacctcaatcttagcttgaaa Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG tggatactaatgaacatttctttgactgttctgttctttgtccctcacagGGTGATTCTAGTATTCGATACTTTGAGAACACAGATGAACCCC---ACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAACAGGGGTATGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagcacaatcagtggttgtatatcagttacctcaatcttagcttgaaa Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAG-AGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG tggatactaatgaacatttctttgactgttctgttctttgtccctcacagGGTGATTCTAGTATTCGATACTTTGAGAACACAGATGAACCCC---ACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAACAGGGGTAT-GGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagcacaatcagtggttgtatatcagttacctcaatcttagcttgaaa Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG tggatactaatgaacatttctttgactgttctgttctttgtccctcacagGGTGATTCTAGTATTCGATACTTTGAGAACACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAACAGGGGTATGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagcacaatcagtggttgtatatcagttacctcaatcttagcttgaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG tggatactaatgaacatttctttgactgttctgttctttgtccctcacagGGTGATTCTAGTATTCGATACTTTGAGAACACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAACAGGGGTATGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagcacaatcagtggttgtatatcagttacctcaatcttagcttgaaa #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGAC-GACGTGCGAGTGAACCCTGAG ttaccacgtgcatgctacgctacctgcgtgaccctactctgcctctgcaggTTGGAGGTGACACGCCGACTCTTCCCACCAATCCCAGGGATTAGGGACAAGGTGTCTGATCGATGTGC-AGTGAACCCTGAGgttggtagtcataggcacttagagtttagtgtgacactgggcctatggta Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccacgtgcatgctacgctacctgcgtgaccctactctgcctctgcaggTTGGAGGTGACACGCCGACTCTTCCCACCAATCCCAGGGATTAGGGACAAGGTGTCTGATCGATGTGCAGTGAACCCTGAGgttggtagtcataggcacttagagtttagtgtgacactgggcctatggta Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccacgtgcatgctacgctacctgcgtgaccctactctgcctctgcagGTTGGAGGTGACACGCCGACTCTTCCCACCAATCCCAGGGATTAGGGACAAGGTGTCTGATCGATGTGCAGTGAACCCTGAGgttggtagtcataggcacttagagtttagtgtgacactgggcctatggta Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGA-CGACGTGCGAGTGAACCCTGAG ttaccacgtgcatgctacgctacctgcgtgaccctactctgcctctgcagGTTGGAGGTGACACGCCGACTCTTCCCACCAATCCCAGGGATTAGGGACAAGGTGTCTGATCGATGTGC-AGTGAACCCTGAGgttggtagtcataggcacttagagtttagtgtgacactgggcctatggta Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGA-CGACGTGCGAGTGAACCCTGAG ttaccacgtgcatgctacgctacctgcgtgaccctactctgcctctgcagGTTGGAGGTGACACGCCGACTCTTCCCACCAATCCCAGGGATTAGGGACAAGGTGTCTGATCGATGTGC-AGTGAACCCTGAGgttggtagtcataggcacttagagtttagtgtgacactgggcctatggta Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccacgtgcatgctacgctacctgcgtgaccctactctgcctctgcagGTTGGAGGTGACACGCCGACTCTTCCCACCAATCCCAGGGATTAGGGACAAGGTGTCTGATCGATGTGCAGTGAACCCTGAGgttggtagtcataggcacttagagtttagtgtgacactgggcctatggta Alignment from Exonerate_coding2genome ttaccacgtgcatgctacgctacctgcgtgaccctactctgcctctgcaggttggaggtgacacgccgactcttcccaccaatcccagggattagggacaaggtgtctgatcgatgtgcagtgaaccctgaggttggtagtcataggcacttagagtttagtgtgacactgggcctatggta Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAGACCCTCAGGAAGGACCTCCTGCAGCCC ttaccacgtgcatgctacgctacctgcgtgaccctactctgcctctgcagGTTGGAGGTGACACGCCGACTCTTCCCACCAATCCCAGGGATTAGGGACAAGGTGTCTGATCGATGTGCAGTGAACCCTGAGGTTGGTAGTCATAGGCACTTAGAGTTTagtgtgacactgggcctatggta #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCAC-GGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATCGGATGGC-CAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTggtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATCGGATGGCCAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTggtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATCGGATGGCCAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATCGGATGGCCAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCA-CGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATCGGATGGC-CAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATCGGATGGCCAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGT ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATCGGATGGCCAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGGGCGcagcctcttggtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from GeneWise ----AGCGCAGAGCCAGGAAGCACACCCCGGAAGGTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagTTCTTACTCCCACGCCTTCTTCTTCCCTCCTCAGGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATCGGATGGCCAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgcccatagctgacaaaattaatagcagccccagcaatctttctgtagAGCGCAGAACCACGGAA-CACACCTCGGCAGgtgagctggcccaatgtagcatatggcctggtttctatatggtagcacag Alignment from CESAR AGCGCAGAGCCAGGAAGCACACCCCGGAAG tatgcccatagctgacaaaattaatagcagccccagcaatctttctgtagAGCGCAGAACCACGGAACACACCTCGGCAGgtgagctggcccaatgtagcatatggcctggtttctatatggtagcacag Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG tatgcccatagctgacaaaattaatagcagccccagcaatctttctgtagAGCGCAGAACCACGGAACACACCTCGGCAGgtgagctggcccaatgtagcatatggcctggtttctatatggtagcacag Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG tatgcccatagctgacaaaattaatagcagccccagcaatctttctgtagAGCGCAGAACCACGGAACACACCTCGGCAGgtgagctggcccaatgtagcatatggcctggtttctatatggtagcacag Alignment from Pairagon AGCGCAGAGCCAGGAAGCACACCCCGGAAG tatgcccatagctgacaaaattaatagcagccccagcaatctttctgtagAGCGCAGAACCACGGAACACACCTCGGCAGgtgagctggcccaatgtagcatatggcctggtttctatatggtagcacag Alignment from Exonerate_protein2genome tatgcccatagctgacaaaattaatagcagccccagcaatctttctgtagagcgcagaaccacggaacacacctcggcaggtgagctggcccaatgtagcatatggcctggtttctatatggtagcacag Alignment from Exonerate_coding2genome tatgcccatagctgacaaaattaatagcagccccagcaatctttctgtagagcgcagaaccacggaacacacctcggcaggtgagctggcccaatgtagcatatggcctggtttctatatggtagcacag Alignment from GeneWise tatgcccatagctgacaaaattaatagcagccccagcaatctttctgtagagcgcagaaccacggaacacacctcggcaggtgagctggcccaatgtagcatatggcctggtttctatatggtagcacag #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGT-GACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagagCGTCTTGGTCCTCCATGTCGATGTCA-AGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagagCGTCTTGGTCCTCCATGTCGATGTCAAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTCGATGTCAAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGT-GACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTCGATGTCA-AGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Pairagon AGCGACTCGGTCCCCCACGT-GACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTCGATGTCA-AGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTCGATGTCAAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTCGATGTCAAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTCGATGTCAAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAg ataggactctcagtgcattaccctaacctaccccctcctccaatccttagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGCAAGCTCA-CTTTGTCAATGAGggtaagagtagatgttggggactccatgatacccttactactaagctatca Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg ataggactctcagtgcattaccctaacctaccccctcctccaatccttagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGCAAGCTCACTTTGTCAATGAGggtaagagtagatgttggggactccatgatacccttactactaagctatca Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattaccctaacctaccccctcctccaatccttagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGCAAGCTCACTTTGTCAATGAGGgtaagagtagatgttggggactccatgatacccttactactaagctatca Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattaccctaacctaccccctcctccaatccttagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGCAAGCTCA-CTTTGTCAATGAGGgtaagagtagatgttggggactccatgatacccttactactaagctatca Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattaccctaacctaccccctcctccaatccttagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGCAAGCTCA-CTTTGTCAATGAGGgtaagagtagatgttggggactccatgatacccttactactaagctatca Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattaccctaacctaccccctcctccaatccttagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGCAAGCTCACTTTGTCAATGAGGgtaagagtagatgttggggactccatgatacccttactactaagctatca Alignment from Exonerate_coding2genome ataggactctcagtgcattaccctaacctaccccctcctccaatccttagccctttggttgccgctgctggttcagaaggatgatggcactgcaccatggtgtaacactggacgtcaatggcacagttggaggtgcagccgcacattggcaagctcactttgtcaatgagggtaagagtagatgttggggactccatgatacccttactactaagctatca Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattaccctaacctaccccctcctccaatccttagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGCAAGCTCACTTTGTCAATGAGGgtaagagtagatgttggggactccatgatacccttactactaagctatca #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCG-GGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagccCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCACTCAATAC-CCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagccCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCACTCAATACCCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCACTCAATACCCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCACTCAATACCCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACA--------------------CCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACT--------------GTTACATCATGGGAAGCACTCAATACCCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCACTCAATACCCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Exonerate_coding2genome aggtcctccaccactcactaccaagacacatcttcactctgtatccacagccccaaccactccgtatgttggctctgctctcaacctgatctttgacccttggacccgcatgctgacctgggcttgtgatactgctgcagacaatgtcatggtgatgtcatgcactgtaactgttacatcatgggaagcactcaatacccggcgagtgtcagtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCACTCAATACCCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTG-CTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg tagggtttgtcacatttgtgaatcaataatttgtgtgtctgcctctctagCTCTGTAGTTTTGAAGCCCTTGAAGCACTTAAGGAACACTTGCTCCCTGAGGAGGG-CTGCAGCCCTGTGAATGCCCAGATCACTggtaagcgattgctcaagtagatggataggaagagatcatacccaagtaag Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg tagggtttgtcacatttgtgaatcaataatttgtgtgtctgcctctctagCTCTGTAGTTTTGAAGCCCTTGAAGCACTTAAGGAACACTTGCTCCCTGAGGAGGGCTGCAGCCCTGTGAATGCCCAGATCACTggtaagcgattgctcaagtagatggataggaagagatcatacccaagtaag Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tagggtttgtcacatttgtgaatcaataatttgtgtgtctgcctctctagCTCTGTAGTTTTGAAGCCCTTGAAGCACTTAAGGAACACTTGCTCCCTGAGGAGGGCTGCAGCCCTGTGAATGCCCAGATCACTGgtaagcgattgctcaagtagatggataggaagagatcatacccaagtaag Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tagggtttgtcacatttgtgaatcaataatttgtgtgtctgcctctctagCTCTGTAGTTTTGAAGCCCTTGAAGCACTTAAGGAACACTTGCTCCCTGAGGAGGGCTGCAGCCCTGTGAATGCCCAGATCACTGgtaagcgattgctcaagtagatggataggaagagatcatacccaagtaag Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCT-GCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tagggtttgtcacatttgtgaatcaataatttgtgtgtctgcctctctagCTCTGTAGTTTTGAAGCCCTTGAAGCACTTAAGGAACACTTGCTCCCTGAGGAGGG-CTGCAGCCCTGTGAATGCCCAGATCACTGgtaagcgattgctcaagtagatggataggaagagatcatacccaagtaag Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tagggtttgtcacatttgtgaatcaataatttgtgtgtctgcctctctagCTCTGTAGTTTTGAAGCCCTTGAAGCACTTAAGGAACACTTGCTCCCTGAGGAGGGCTGCAGCCCTGTGAATGCCCAGATCACTGgtaagcgattgctcaagtagatggataggaagagatcatacccaagtaag Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tagggtttgtcacatttgtgaatcaataatttgtgtgtctgcctctctagCTCTGTAGTTTTGAAGCCCTTGAAGCACTTAAGGAACACTTGCTCCCTGAGGAGGGCTGCAGCCCTGTGAATGCCCAGATCACTGgtaagcgattgctcaagtagatggataggaagagatcatacccaagtaag Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tagggtttgtcacatttgtgaatcaataatttgtgtgtctgcctctctagCTCTGTAGTTTTGAAGCCCTTGAAGCACTTAAGGAACACTTGCTCCCTGAGGAGGGCTGCAGCCCTGTGAATGCCCAGATCACTGgtaagcgattgctcaagtagatggataggaagagatcatacccaagtaag #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCA-TTGTTGGACAAGGATCCCCTGCCCCAG tcactgaactaagatttggctggagataagttccctgtcttacctcacagagTTTCGAAATGTCACCCTTGGCTCACTTCTGCCACCTGCTTG-CAAAGATCCCCTGCCCCAGgtaacagggaaaatgttacatagggagaaagcacatctttattcatcttt Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcactgaactaagatttggctggagataagttccctgtcttacctcacagagTTTCGAAATGTCACCCTTGGCTCACTTCTGCCACCTGCTTGCAAAGATCCCCTGCCCCAGgtaacagggaaaatgttacatagggagaaagcacatctttattcatcttt Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcactgaactaagatttggctggagataagttccctgtcttacctcacagAGTTTCGAAATGTCACCCTTGGCTCACTTCTGCCACCTGCTTGCAAAGATCCCCTGCCCCAGgtaacagggaaaatgttacatagggagaaagcacatctttattcatcttt Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCAT-TGTTGGACAAGGATCCCCTGCCCCAG tcactgaactaagatttggctggagataagttccctgtcttacctcacagAGTTTCGAAATGTCACCCTTGGCTCACTTCTGCCACCTGCTTG-CAAAGATCCCCTGCCCCAGgtaacagggaaaatgttacatagggagaaagcacatctttattcatcttt Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCA-----TTGTTGGACAAGGATCCCCTGCCCCAG tcactgaactaagatttggctggagataagttccctgtcttacctcacagAGTTTCGAAATGTCACCCTTGGCTCACTTCTGCCACCTGCTTG-----CAAAGATCCCCTGCCCCAGgtaacagggaaaatgttacatagggagaaagcacatctttattcatcttt Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcactgaactaagatttggctggagataagttccctgtcttacctcacagAGTTTCGAAATGTCACCCTTGGCTCACTTCTGCCACCTGCTTGCAAAGATCCCCTGCCCCAGgtaacagggaaaatgttacatagggagaaagcacatctttattcatcttt Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcactgaactaagatttggctggagataagttccctgtcttacctcacagAGTTTCGAAATGTCACCCTTGGCTCACTTCTGCCACCTGCTTGCAAAGATCCCCTGCCCCAGgtaacagggaaaatgttacatagggagaaagcacatctttattcatcttt Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcactgaactaagatttggctggagataagttccctgtcttacctcacagAGTTTCGAAATGTCACCCTTGGCTCACTTCTGCCACCTGCTTGCAAAGATCCCCTGCCCCAGgtaacagggaaaatgttacatagggagaaagcacatctttattcatcttt #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAAC-GTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATCGGGGAGG-CCAGTGG---TTGATCCGAGGAACTCTGCTTTCA---TCAGAACAGggtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATCGGGGAGGCCAGTGG---TTGATCCGAGGAACTCTGCTTTCA---TCAGAACAGggtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Spaln_aa2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATCGGGGAGGCCAGTGGTTGATC---CGAGGAACTCTGCTTTCA---TCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Spaln_nt2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATCGGGGAGGCCAGTGGT---TGATCCGAGGAACTCTGCTTTC---ATCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Pairagon ------------------------------------------------------GCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG CCTCGGAGAACCCCATTAGAGAACTCTGACCCTTAATTTGGGGGTTCTAGAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATCGGGGAGGCCAGTGGT---TGATCCGAGGAACTCTGCTTTC---ATCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Exonerate_protein2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATCGGGGAGGCCAGTGGTTGATC---CGAGGAACTCTGCTTTCA---TCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Exonerate_coding2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATCGGGGAGGCCAGTGGTTGATC---CGAGGAACTCTGCTTTCA---TCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from GeneWise ---GGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCC------------------------------------------------------------ cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATCGGGGAGGCCAGTGGTTGATC---CGAGGAACTCTGCTTTCATCAGAACAGGGTGAGTATCCTGATCCATTCTGTGTTTATCAGACAAACCCCTCCATAGGG #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCA-AAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccaggaGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCACAAAG-CTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATagtaagtgagggctaccctaggtgacttggggtaacacaactggtctgttt Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccaggaGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCACAAAGCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATagtaagtgagggctaccctaggtgacttggggtaacacaactgggtccttt Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCACAAAGCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtctgttt Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCACAAAGCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtctgttt Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCACAAAGCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtctgttt Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCACAAAGCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtctgttt Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCACAAAGCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtctgttt Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATAAGAT gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCACAAAGCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAGTAAgtgagggctaccctaggtgacttggggtaacacaactggtctgttt #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGAC-GCATATCTAACTGTCCTCAACAACa caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagagCTTTTGGACTGCAAGCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATCGCAT-TCTAACTGTCCTCAATAATagtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from CESAR agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagagCTTTTGGACTGCAAGCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATCGCATTCTAACTGTCCTCAATAATagtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATCGCATTCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATCGCATTCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Pairagon AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGA-CGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATCGCAT-TCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATCGCATTCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Exonerate_coding2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATCGCATTCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from GeneWise AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATCGCATTCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAG-CAGTTTGTGGACGTCTCTGTGCAGg cggtttgcacttatctaacccaaggacagaatctctgatattccccttagAGAGGGTGCAACCATTTCCCTGGCCGATGGATCAGCGTGTGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGCAAGTTTGTGG-TGTCTCAGTCCAGggtcagaggggttaccatgtggttagctgtgttctctactctttacatacc Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cggtttgcacttatctaacccaaggacagaatctctgatattccccttagAGAGGGTGCAACCATTTCCCTGGCCGATGGATCAGCGTGTGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGCAAGTTTGTGGTGTCTCAGTCCAGggtcagaggggttaccatgtggttagctgtgttctctactctttacatacc Alignment from Spaln_aa2Genome -- -AAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG CGgtttgcacttatctaacccaaggacagaatctctgatattccccttagagagggtgcaaccatttccctggccgatggatcagCGTGTGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGCAAGTTTGTGGTGTCTCAGTCCAGGgtcagaggggttaccatgtggttagctgtgttctctactctttacatacc Alignment from Spaln_nt2Genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCA-GTTTGTGGACGTCTCTGTGCAGG cggtttgcacttatctaacccaaggacagaatctctgatattccccttagagagggtgcaaccatttccctggccgatggatcagCG----TG----TGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGCAAGTTTGTGG-TGTCTCAGTCCAGGgtcagaggggttaccatgtggttagctgtgttctctactctttacatacc Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGC-AGTTTGTGGACGTCTCTGTGCAGG cggtttgcacttatctaacccaaggacagaatctctgatattccccttagAGAGGGTGCAACCATTTCCCTGGCCGATGGATCAGCGTGTGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGCAAGTTTGTGG-TGTCTCAGTCCAGGgtcagaggggttaccatgtggttagctgtgttctctactctttacatacc Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cggtttgcacttatctaacccaaggacagaatctctgatattccccttagagagggtgcaaccatttccctggccgaTGGATCAGCGTGTGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGCAAGTTTGTGGTGTCTCAGTCCAGGgtcagaggggttaccatgtggttagctgtgttctctactctttacatacc Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cggtttgcacttatctaacccaaggacagaatctctgatattccccttagagagggtgcaaccatttccctggccgaTGGATCAGCGTGTGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGCAAGTTTGTGGTGTCTCAGTCCAGGgtcagaggggttaccatgtggttagctgtgttctctactctttacatacc Alignment from GeneWise TG CAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG CGgtttgcacttatctaacccaaggacagaatctctgatattccccttagagagggtgcaaccatttccctggccgatggatcagCGTGTGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGCAAGTTTGTGGTGTCTCAGTCCAGGgtcagaggggttaccatgtggttagctgtgttctctactctttacatacc #### Cyp17a1_ID9993_7 --> 1 - 1 Original Alignment cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTG-ATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg ggactctctttggctaaattaactatttttccctctttcccccactgcagtATTGGAGAGTATGCCATCCTAAAAGATACTCATGTACATCATCA-CCTGTGGGCACTGCATCATGACAAAAATGAA---TATCAGGCAGATCAGTTCATGCCTggtaggaccctgtccactccatgcttactcctgtaccatctagtttctcat Alignment from CESAR cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg ggactctctttggctaaattaactatttttccctctttcccccactgcagtATTGGAGAGTATGCCATCCTAAAAGATACTCATGTACATCATCACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTggtaggaccctgtccactccatgcttactcctgtaccatctagtttctcat Alignment from Spaln_aa2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG ggactctctttggctaaattaactatttttccctctttcccccactgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTACATCATCACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtaggaccctgtccactccatgcttactcctgtaccatctagtttctcat Alignment from Spaln_nt2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTG-ATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG ggactctctttggctaaattaactatttttccctctttcccccactgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTACATCATC-ACCTGTGGGCACTGCATCATGACAAAAATGAAT---ATCAGGCAGATCAGTTCATGCCTGgtaggaccctgtccactccatgcttactcctgtaccatctagtttctcat Alignment from Pairagon CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTG-ATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG ggactctctttggctaaattaactatttttccctctttcccccactgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTACATCATC-ACCTGTGGGCACTGCATCATGACAAAAATGAAT---ATCAGGCAGATCAGTTCATGCCTGgtaggaccctgtccactccatgcttactcctgtaccatctagtttctcat Alignment from Exonerate_protein2genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG ggactctctttggctaaattaactatttttccctctttcccccactgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTACATCATCACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtaggaccctgtccactccatgcttactcctgtaccatctagtttctcat Alignment from Exonerate_coding2genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG ggactctctttggctaaattaactatttttccctctttcccccactgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTACATCATCACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtaggaccctgtccactccatgcttactcctgtaccatctagtttctcat Alignment from GeneWise CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG ggactctctttggctaaattaactatttttccctctttcccccactgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTACATCATCACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtaggaccctgtccactccatgcttactcctgtaccatctagtttctcat #### Cyp17a1_ID9997_3 --> 2 - 0 Original Alignment taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATC-TGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGC---------------------------GATCTGGTGGACATATTCCCGTGGTTGAAG caagctacttgtcctgtgctctatcgactattctcctctcctttccacagtaTGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGATGGGGAATCCCAAGATCTATCTACACTCATTTTCAAGTCAGCCATTAACATCATCCTGTA-CATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGACAAACTTTCATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgtaagagggaatttttatgaaacagtgactctacttcccattttagcacc Alignment from CESAR taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGC---------------------------GATCTGGTGGACATATTCCCGTGGTTGAAG caagctacttgtcctgtgctctatcgactattctcctctcctttccacagtaTGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGATGGGGAATCCCAAGATCTATCTACACTCATTTTCAAGTCAGCCATTAACATCATCCTGTACATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGACAAACTTTCATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgtaagagggaatttttatgaaacagtgactctacttcccattttagcacc Alignment from Spaln_aa2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG--- caagctacttgtcctgtgctctatcgactattctcctctcctttccacagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGATGGGGAATCCCAAGATCTATCTACACTCATTTTCAAGTCAGCCATTAACATCATCCTGTACATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGACAAACTTTCATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGgtggagataatcccatggttaaaggtaagagggaatttttatgaaacagtgactctacttcccattttagcacc Alignment from Spaln_nt2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCT---------------------------GGTGGACATATTCCCGTGGTTGAAG caagctacttgtcctgtgctctatcgactattctcctctcctttccacagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGATGGGGAATCCCAAGATCTATCTACACTCATTTTCAAGTCAGCCATTAACATCATCCTGTACATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGACAAACTTTCATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgtaagagggaatttttatgaaacagtgactctacttcccattttagcacc Alignment from Pairagon TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCAT-CTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAG---------------------------CGATCTGGTGGACATATTCCCGTGGTTGAAG caagctacttgtcctgtgctctatcgactattctcctctcctttccacagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGATGGGGAATCCCAAGATCTATCTACACTCATTTTCAAGTCAGCCATTAACATCATCCTGTA-CATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGACAAACTTTCATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgtaagagggaatttttatgaaacagtgactctacttcccattttagcacc Alignment from Exonerate_protein2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG caagctacttgtcctgtgctctatcgactattctcctctcctttccacagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGATGGGGAATCCCAAGATCTATCTACACTCATTTTCAAGTCAGCCATTAACATCATCCTGTACATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGACAAACTTTCATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATctggtggagataatcccatggttaaaggtaagagggaatttttatgaaacagtgactctacttcccattttagcacc Alignment from Exonerate_coding2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG caagctacttgtcctgtgctctatcgactattctcctctcctttccacagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGATGGGGAATCCCAAGATCTATCTACACTCATTTTCAAGTCAGCCATTAACATCATCCTGTACATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGACAAACTTTCATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATctggtggagataatcccatggttaaaggtaagagggaatttttatgaaacagtgactctacttcccattttagcacc Alignment from GeneWise TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAGATT caagctacttgtcctgtgctctatcgactattctcctctcctttccacagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGATGGGGAATCCCAAGATCTATCTACACTCATTTTCAAGTCAGCCATTAACATCATCCTGTACATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGACAAACTTTCATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGgtggagataatcccatggttaaaggtaagagggaatttttatgaaacagtgactctacttcccattttagcacc #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGG-GAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCATTAGTTGACCATGGGCGAAGAATTTG-TGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGggtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from CESAR TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCATTAGTTGACCATGGGCGAAGAATTTGTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGggtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Spaln_aa2Genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCATTAGTTGACCATGGGCGAAGAATTTGTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATG---GCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCATTAGTTGACCATGGGCGAAGAATTTGTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Pairagon TTATCAAAAGTTT---ATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGG-GAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCATTAGTTGACCATGGGCGAAGAATTTG-TGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Exonerate_protein2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCATTAGTTGACCATGGGCGAAGAATTTGTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Exonerate_coding2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCATTAGTTGACCATGGGCGAAGAATTTGTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from GeneWise TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATG--------------------------------------------------- attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCATTAGTTGACCATGGGCGAAGAATTTGTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGGTATCAATAGGTTTGCAATACCAGTGAAAGAATGTGTGAGTCCATCCCAG #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGG-CTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgagaaccagggctggtgacttcacattaccttgtgtttgttgtctgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCCGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTCGCTGGAAGGGGTAGTCCTCCCAG-TTTTGATAAAGCTACTAATGGAATGggtgagttttgtggtgtgtagtatgcatggttgcagtacagtgatacccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgagaaccagggctggtgacttcacattaccttgtgtttgttgtctgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCCGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTCGCTGGAAGGGGTAGTCCTCCCAGTTTTGATAAAGCTACTAATGGAATGggtgagttttgtggtgtgtagtatgcatggttgcagtacagtgatacccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaaccagggctggtgacttcacattaccttgtgtttgttgtctgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCCGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTCGCTGGAAGGGGTAGTCCTCCCAGTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtggtgtgtagtatgcatggttgcagtacagtgatacccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGA---AGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGC-TCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaaccagggctggtgacttcacattaccttgtgtttgttgtctgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCCGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTCGCTGGAAGGGGTAGTCCTCCCAG-TTTTGATAAAGCTACTAATGGAATGGgtgagttttgtggtgtgtagtatgcatggttgcagtacagtgatacccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaaccagggctggtgacttcacattaccttgtgtttgttgtctgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCCGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTCGCTGGAAGGGGTAGTCCTCCCAGTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtggtgtgtagtatgcatggttgcagtacagtgatacccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaaccagggctggtgacttcacattaccttgtgtttgttgtctgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCCGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTCGCTGGAAGGGGTAGTCCTCCCAGTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtggtgtgtagtatgcatggttgcagtacagtgatacccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaaccagggctggtgacttcacattaccttgtgtttgttgtctgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCCGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTCGCTGGAAGGGGTAGTCCTCCCAGTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtggtgtgtagtatgcatggttgcagtacagtgatacccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA---GCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaaccagggctggtgacttcacattaccttgtgtttgttgtctgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCCGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTCGCTGGAAGGGGTAGTCCTCCCAGTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtggtgtgtagtatgcatggttgcagtacagtgatacccaa #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGAT-GTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtaggGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATCGTCTTGCAAC-AAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from CESAR gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtaggGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATCGTCTTGCAACAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATCGTCTTGCAACAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGAT-GTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATCGTCTTGCAAC-AAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Pairagon GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGAT-GTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATCGTCTTGCAAC-AAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATCGTCTTGCAACAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATCGTCTTGCAACAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAG-CAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACCAGGAGA-GGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from CESAR GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACCAGGAGAGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Spaln_aa2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACCAGGAGAGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACCAGGAGAGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAG-CAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACCAGGAGA-GGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACCAGGAGAGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACCAGGAGAGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGACCTG-ACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacactgtacttttgttaaactaccacgctctttctgtactctttccagGATGCCTTAACTGATTTGCACAGGTG-TGCAGAGCACCTTCCTGCAGAGACACACAGAGGTGCCTGGTTGGGGCATAAAgttcagggttaactgaggttcctgcatctcacaattgctctgatgttgaa Alignment from CESAR GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacactgtacttttgttaaactaccacgctctttctgtactctttccagGATGCCTTAACTGATTTGCACAGGTGTGCAGAGCACCTTCCTGCAGAGACACACAGAGGTGCCTGGTTGGGGCATAAAgttcagggttaactgaggttcctgcatctcacaattgctctgatgttgaa Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacactgtacttttgttaaactaccacgctctttctgtactctttccagGATGCCTTAACTGATTTGCACAGGTGTGCAGAGCACCTTCCTGCAGAGACACACAGAGGTGCCTGGTTGGGGCATAAAgttcagggttaactgaggttcctgcatctcacaattgctctgatgttgaa Alignment from Spaln_nt2Genome GATGCCCTGACTGACCTG-ACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacactgtacttttgttaaactaccacgctctttctgtactctttccagGATGCCTTAACTGATTTGCACAGGTG-TGCAGAGCACCTTCCTGCAGAGACACACAGAGGTGCCTGGTTGGGGCATAAAgttcagggttaactgaggttcctgcatctcacaattgctctgatgttgaa Alignment from Pairagon GATGCCCTGACTGACCTG-ACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACA---------------------------------------------------- ttacactgtacttttgttaaactaccacgctctttctgtactctttccagGATGCCTTAACTGATTTGCACAGGTG-TGCAGAGCACCTTCCTGCAGAGACACACAGAGGTGCCTGGTTGGGGCATAAAGTTCAGGGTTAACTGAGGTTCCTGCATCTCACAATTGCTCTGATGTTGAA Alignment from Exonerate_protein2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacactgtacttttgttaaactaccacgctctttctgtactctttccagGATGCCTTAACTGATTTGCACAGGTGTGCAGAGCACCTTCCTGCAGAGACACACAGAGGTGCCTGGTTGGGGCATAAAgttcagggttaactgaggttcctgcatctcacaattgctctgatgttgaa Alignment from Exonerate_coding2genome ttacactgtacttttgttaaactaccacgctctttctgtactctttccaggatgccttaactgatttgcacaggtgtgcagagcaccttcctgcagagacacacagaggtgcctggttggggcataaagttcagggttaactgaggttcctgcatctcacaattgctctgatgttgaa Alignment from GeneWise GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacactgtacttttgttaaactaccacgctctttctgtactctttccagGATGCCTTAACTGATTTGCACAGGTGTGCAGAGCACCTTCCTGCAGAGACACACAGAGGTGCCTGGTTGGGGCATAAAgttcagggttaactgaggttcctgcatctcacaattgctctgatgttgaa #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTG-TGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctatggtgctggggtctggccattttctattgtcaatatagCTAGACTCTCTGCTGGTCAG-GGCACAGGAATTCCAAGCCTGGAAAAGCCCCGGGGCTAGCCTCCTTCCGGTCCTTACAAAAGCTGTGAAGgtacgacactcactagtaatttagctgcacaattaaggatccaaggcttc Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctatggtgctggggtctggccattttctattgtcaatatagCTAGACTCTCTGCTGGTCAGGGCACAGGAATTCCAAGCCTGGAAAAGCCCCGGGGCTAGCCTCCTTCCGGTCCTTACAAAAGCTGTGAAGgtacgacactcactagtaatttagctgcacaattaaggatccaaggcttc Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctatggtgctggggtctggccattttctattgtcaatatagCTAGACTCTCTGCTGGTCAGGGCACAGGAATTCCAAGCCTGGAAAAGCCCCGGGGCTAGCCTCCTTCCGGTCCTTACAAAAGCTGTGAAGgtacgacactcactagtaatttagctgcacaattaaggatccaaggcttc Alignment from Spaln_nt2Genome CTGGATTCTCTG-TGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctatggtgctggggtctggccattttctattgtcaatatagCTAGACTCTCTGCTGGTCAG-GGCACAGGAATTCCAAGCCTGGAAAAGCCCCGGGGCTAGCCTCCTTCCGGTCCTTACAAAAGCTGTGAAGgtacgacactcactagtaatttagctgcacaattaaggatccaaggcttc Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctatggtgctggggtctggccattttctattgtcaatatagCTAGACTCTCTGCTGGTCAGGGCACAGGAATTCCAAGCCTGGAAAAGCCCCGGGGCTAGCCTCCTTCCGGTCCTTACAAAAGCTGTGAAGgtacgacactcactagtaatttagctgcacaattaaggatccaaggcttc Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctatggtgctggggtctggccattttctattgtcaatatagCTAGACTCTCTGCTGGTCAGGGCACAGGAATTCCAAGCCTGGAAAAGCCCCGGGGCTAGCCTCCTTCCGGTCCTTACAAAAGCTGTGAAGgtacgacactcactagtaatttagctgcacaattaaggatccaaggcttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctatggtgctggggtctggccattttctattgtcaatatagCTAGACTCTCTGCTGGTCAGGGCACAGGAATTCCAAGCCTGGAAAAGCCCCGGGGCTAGCCTCCTTCCGGTCCTTACAAAAGCTGTGAAGgtacgacactcactagtaatttagctgcacaattaaggatccaaggcttc #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCTGCA-CCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtaggTATGGAAAGGCTGCACCCAG-AGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggtt Alignment from CESAR gTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtaggTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggcc Alignment from Spaln_aa2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggtt Alignment from Spaln_nt2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggtt Alignment from Pairagon GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggtt Alignment from Exonerate_protein2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggtt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggtt #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTC-TTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag gtaagaactgtaccctattttgcctccctaattttaactcttcttcaaaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCCTTCTCCA-TGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaagtttcctaagtgtctcaagtaggggtcacatatcctttttatgatt Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag gtaagaactgtaccctattttgcctccctaattttaactcttcttcaaaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCCTTCTCCATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaagtttcctaagtgtctcaagtaggggtcacatatcctttttatgatt Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagaactgtaccctattttgcctccctaattttaactcttcttcaaagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCCTTCTCCATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctaagtgtctcaagtaggggtcacatatcctttttatgatt Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagaactgtaccctattttgcctccctaattttaactcttcttcaaagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCCTTCTCCATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctaagtgtctcaagtaggggtcacatatcctttttatgatt Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagaactgtaccctattttgcctccctaattttaactcttcttcaaagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCCTTCTCCATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctaagtgtctcaagtaggggtcacatatcctttttatgatt Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagaactgtaccctattttgcctccctaattttaactcttcttcaaagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCCTTCTCCATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctaagtgtctcaagtaggggtcacatatcctttttatgatt Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagaactgtaccctattttgcctccctaattttaactcttcttcaaagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCCTTCTCCATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctaagtgtctcaagtaggggtcacatatcctttttatgatt Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagaactgtaccctattttgcctccctaattttaactcttcttcaaagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCCTTCTCCATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctaagtgtctcaagtaggggtcacatatcctttttatgatt #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAA-GACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg taggatggttggaacccgtgtagataaagcttctcccgcctgtctgaaagtgCTTCATGCCCACCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGTTAAACGATCCCAACA-TTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATggtactatgatctaggagtccttttccagctttttagaggcctatttgtaa Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg taggatggttggaacccgtgtagataaagcttctcccgcctgtctgaaagtgCTTCATGCCCACCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGTTAAACGATCCCAACATTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATggtactatgatctaggagtccttttccagctttttagaggcctatttgtaa Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggttggaacccgtgtagataaagcttctcccgcctgtctgaaagTGCTTCATGCCCACCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGTTAAACGATCCCAACATTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtactatgatctaggagtccttttccagctttttagaggcctatttgtaa Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggttggaacccgtgtagataaagcttctcccgcctgtctgaaagTGCTTCATGCCCACCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGTTAAACGATCCCAACATTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtactatgatctaggagtccttttccagctttttagaggcctatttgtaa Alignment from Pairagon -----------------------------------------------AAGTGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAA-GACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG TAGGATGGTTGGAACCCGTGTAGATAAAGCTTCTCCCGCCTGTCTGAAAGTGCTTCATGCCCACCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGTTAAACGATCCCAACA-TTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtactatgatctaggagtccttttccagctttttagaggcctatttgtaa Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggttggaacccgtgtagataaagcttctcccgcctgtctgaaagTGCTTCATGCCCACCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGTTAAACGATCCCAACATTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtactatgatctaggagtccttttccagctttttagaggcctatttgtaa Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggttggaacccgtgtagataaagcttctcccgcctgtctgaaagTGCTTCATGCCCACCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGTTAAACGATCCCAACATTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtactatgatctaggagtccttttccagctttttagaggcctatttgtaa Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggttggaacccgtgtagataaagcttctcccgcctgtctgaaagTGCTTCATGCCCACCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGTTAAACGATCCCAACATTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtactatgatctaggagtccttttccagctttttagaggcctatttgtaa #### Ddb1_ID2936_21 --> 2 - 0 Original Alignment gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATG-GTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcaggaAAGCTG---ACTGTCACTGATAAGGAAGTGAAAGGAGCGGTGTACTCCATGCGTGGAGT-TAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from CESAR gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcaggaAAGCTG---ACTGTCACTGATAAGGAAGTGAAAGGAGCGGTGTACTCCATGCGTGGAGTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Spaln_aa2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCTG---ACTGTCACTGATAAGGAAGTGAAAGGAGCGGTGTACTCCATGCGTGGAGTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Spaln_nt2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCT---GACTGTCACTGATAAGGAAGTGAAAGGAGCGGTGTACTCCATGCGTGGAGTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Pairagon GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATG-GTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCT---GACTGTCACTGATAAGGAAGTGAAAGGAGCGGTGTACTCCATGCGTGGAG-TTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Exonerate_protein2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCTG---ACTGTCACTGATAAGGAAGTGAAAGGAGCGGTGTACTCCATGCGTGGAGTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Exonerate_coding2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCTG---ACTGTCACTGATAAGGAAGTGAAAGGAGCGGTGTACTCCATGCGTGGAGTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from GeneWise CTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcaggaaagCTG---ACTGTCACTGATAAGGAAGTGAAAGGAGCGGTGTACTCCATGCGTGGAGTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTT-GTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagtGCCGCAACGACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTCGTCATTG-GTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtaagcgctcaagctcttgtgagatggcttgcttatgcaaaatttctcaa Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagtGCCGCAACGACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTCGTCATTGGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtaagcgctcaagctcttgtgagatggcttgcttatgcaaaagtaacttt Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTCGTCATTGGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaatttctcaa Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTCGTCATTGGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaatttctcaa Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTCGTCATTGGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaatttctcaa Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTCGTCATTGGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaatttctcaa Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTCGTCATTGGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaatttctcaa Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTCGTCATTGGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaatttctcaa #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAG-GAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGCGAGCTAG-GTCCTGTTCTGACTGTGGCCGCTCAggtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGCGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAggtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGCGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGCGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAG-GAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGCGAGCTAG-GTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGCGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGCGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGCGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGAT-ACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATCACACCAA-GCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcacattttcttcttcttttcagGGTACAGGTGTT Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATCACACCAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttgtgactgtctttctctctccagGGTACAGGTGTT Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATCACACCAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcacattttcttcttcttttcagGGTACAGGTGTT Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATCACACCAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcacattttcttcttcttttcagGGTACAGGTGTT Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATCACACCAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcacattttcttcttcttttcagGGTACAGGTGTT Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATCACACCAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcacattttcttcttcttttcagGGTACAGGTGTT Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATCACACCAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcacattttcttcttcttttcagGGTACAGGTGTT Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATCACACCAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcacattttcttcttcttttcagGGTACAGGTGTT #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTG-GGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tggggtagacagccaatctctgatttatccagtgcccactttctccccagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATCAAGAGTGTCATGCTGAGAGTGTGCGGCC-GTATCTCTGT---ACCCCCCAAGTGTTGgagtacttaaaatctccaaattcacaggattttctttttattttctttttta Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tggggtagacagccaatctctgatttatccagtgcccactttctccccagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATCAAGAGTGTCATGCTGAGAGTGTGCGGCCGTATCTCTGT---ACCCCCCAAGTGTTGgagtacttaaaatctccaaattcacaggattttcccttttttttctgttgca Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggtagacagccaatctctgatttatccagtgcccactttctccccagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATCAAGAGTGTCATGCTGAGAGTGTGCGGCCGTATCTCTGT---ACCCCCCAAGTGTTGGAgtacttaaaatctccaaattcacaggattttctttttattttctttttta Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggtagacagccaatctctgatttatccagtgcccactttctccccagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATCAAGAGTGTCATGCTGAGAGTGTGCGGCCGTATCTCTGT---ACCCCCCAAGTGTTGGAgtacttaaaatctccaaattcacaggattttctttttattttctttttta Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggtagacagccaatctctgatttatccagtgcccactttctccccagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATCAAGAGTGTCATGCTGAGAGTGTGCGGCCGTATCTCTGT---ACCCCCCAAGTGTTGGAgtacttaaaatctccaaattcacaggattttctttttattttctttttta Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggtagacagccaatctctgatttatccagtgcccactttctccccagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATCAAGAGTGTCATGCTGAGAGTGTGCGGCCGTATCTCTGT---ACCCCCCAAGTGTTGGAgtacttaaaatctccaaattcacaggattttctttttattttctttttta Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggtagacagccaatctctgatttatccagtgcccactttctccccagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATCAAGAGTGTCATGCTGAGAGTGTGCGGCCGTATCTCTGT---ACCCCCCAAGTGTTGGAgtacttaaaatctccaaattcacaggattttctttttattttctttttta Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGAG------------------------------------------------- tggggtagacagccaatctctgatttatccagtgcccactttctccccagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATCAAGAGTGTCATGCTGAGAGTGTGCGGCCGTATCTCTGT---ACCCCCCAAGTGTTGGAGTACTTAAAATCTCCAAATTCACAGGATTTTCTTTTTATTTTCTTTTTTA #### Dpp3_ID742_11 --> 0 - 0 Original Alignment GACCTGTATATCCGCTGGAAGGGGCCGTCCTTT-GATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgtcatagtgtggctgtggtggccagtgtttttttttttccccctaatagGATCTGTATATCCACTGGAAAGGGCCATCGTTTCGATGTAC-AGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtgagcggtcctaaaggcagatcctgttacaggtgctaccgatcatgccc Alignment from CESAR GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgtcatagtgtggctgtggtggccagtgtttttttttttccccctaatagGATCTGTATATCCACTGGAAAGGGCCATCGTTTCGATGTACAGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtgagcggtcctaaaggcagatcctgttacaggtgctaccgatcatgccc Alignment from Spaln_aa2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgtcatagtgtggctgtggtggccagtgtttttttttttccccctaatagGATCTGTATATCCACTGGAAAGGGCCATCGTTTCGATGTACAGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtgagcggtcctaaaggcagatcctgttacaggtgctaccgatcatgccc Alignment from Spaln_nt2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgtcatagtgtggctgtggtggccagtgtttttttttttccccctaatagGATCTGTATATCCACTGGAAAGGGCCATCGTTTCGATGTACAGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtgagcggtcctaaaggcagatcctgttacaggtgctaccgatcatgccc Alignment from Pairagon GACCTGTATATCCGCTGGAAGGGGCCGTCCTTT-GATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgtcatagtgtggctgtggtggccagtgtttttttttttccccctaatagGATCTGTATATCCACTGGAAAGGGCCATCGTTTCGATGTACA-GTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtgagcggtcctaaaggcagatcctgttacaggtgctaccgatcatgccc Alignment from Exonerate_protein2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgtcatagtgtggctgtggtggccagtgtttttttttttccccctaatagGATCTGTATATCCACTGGAAAGGGCCATCGTTTCGATGTACAGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtgagcggtcctaaaggcagatcctgttacaggtgctaccgatcatgccc Alignment from Exonerate_coding2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgtcatagtgtggctgtggtggccagtgtttttttttttccccctaatagGATCTGTATATCCACTGGAAAGGGCCATCGTTTCGATGTACAGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtgagcggtcctaaaggcagatcctgttacaggtgctaccgatcatgccc Alignment from GeneWise GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgtcatagtgtggctgtggtggccagtgtttttttttttccccctaatagGATCTGTATATCCACTGGAAAGGGCCATCGTTTCGATGTACAGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtgagcggtcctaaaggcagatcctgttacaggtgctaccgatcatgccc #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGC-TTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCCTTCACTG-GGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAaggtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCCTTCACTGGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAaggtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCCTTCACTGGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCCTTCACTGGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCCTTCACTGGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCCTTCACTGGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCCTTCACTGGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCCTTCACTGGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGT-CACCCTCCTGCCCACTTTCAGag tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCCACC-TCCTGCCCATTATCAGaggtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCCACCTCCTGCCCATTATCAGaggtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCCACCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCCACCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCCACCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCCACCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Exonerate_coding2genome AGGATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttAGGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCCACCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCCACCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGAC-ATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagaATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACCATGCAGGGGG-CAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAaggtaaggagccaggggcctgcaacttgaccttcttcctggtaggGGCTGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagaATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACCATGCAGGGGGCAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAaggtaaggagccaggggcctgcatgtctcccctctttgctgtaggGGCTGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACCATGCAGGGGGCAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgcaacttgaccttcttcctggtagGGGCTGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGAC-ATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACCATGCAGGGGG-CAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgcaacttgaccttcttcctggtagGGGCTGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGA-CATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACCATGCAGGGGG-CAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgcaacttgaccttcttcctggtagGGGCTGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACCATGCAGGGGGCAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgcaacttgaccttcttcctggtagGGGCTGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGGGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACCATGCAGGGGGCAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGGTAAGGAGCCAGGGGCCTGCAACTTGACCTTCTTCCTGGTAGGGGCTGTA Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACCATGCAGGGGGCAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgcaacttgaccttcttcctggtagGGGCTGTA #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACC-CAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tagtctgaggtggagtaatgccttacacattggtgctgcctttgttgtagcgCGGGCACTTGAGCTTTTCTTGGAGTCCTTGCTGAAGAAGGCTTGCCAGGTGACCCCAGT-TCGAAATGCAAAGACAATGACCACTTCTCACctgtaggttttcccaacctggcaggggtgtttaaaactatggggcaagaatt Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tagtctgaggtggagtaatgccttacacattggtgctgcctttgttgtagcgCGGGCACTTGAGCTTTTCTTGGAGTCCTTGCTGAAGAAGGCTTGCCAGGTGACCCCAGTTCGAAATGCAAAGACAATGACCACTTCTCACctgtaggttttcccaacctggcaggggtgtttaaaactatggggcaagaatt Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggagtaatgccttacacattggtgctgcctttgttgtagCGCGGGCACTTGAGCTTTTCTTGGAGTCCTTGCTGAAGAAGGCTTGCCAGGTGACCCCAGTTCGAAATGCAAAGACAATGACCACTTCTCACCTgtaggttttcccaacctggcaggggtgtttaaaactatggggcaagaatt Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggagtaatgccttacacattggtgctgcctttgttgtagCGCGGGCACTTGAGCTTTTCTTGGAGTCCTTGCTGAAGAAGGCTTGCCAGGTGACCCCAGTTCGAAATGCAAAGACAATGACCACTTCTCACCTgtaggttttcccaacctggcaggggtgtttaaaactatggggcaagaatt Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggagtaatgccttacacattggtgctgcctttgttgtagCGCGGGCACTTGAGCTTTTCTTGGAGTCCTTGCTGAAGAAGGCTTGCCAGGTGACCCCAGTTCGAAATGCAAAGACAATGACCACTTCTCACCTgtaggttttcccaacctggcaggggtgtttaaaactatggggcaagaatt Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggagtaatgccttacacattggtgctgcctttgttgtagCGCGGGCACTTGAGCTTTTCTTGGAGTCCTTGCTGAAGAAGGCTTGCCAGGTGACCCCAGTTCGAAATGCAAAGACAATGACCACTTCTCACCTgtaggttttcccaacctggcaggggtgtttaaaactatggggcaagaatt Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggagtaatgccttacacattggtgctgcctttgttgtagCGCGGGCACTTGAGCTTTTCTTGGAGTCCTTGCTGAAGAAGGCTTGCCAGGTGACCCCAGTTCGAAATGCAAAGACAATGACCACTTCTCACCTgtaggttttcccaacctggcaggggtgtttaaaactatggggcaagaatt Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggagtaatgccttacacattggtgctgcctttgttgtagCGCGGGCACTTGAGCTTTTCTTGGAGTCCTTGCTGAAGAAGGCTTGCCAGGTGACCCCAGTTCGAAATGCAAAGACAATGACCACTTCTCACCTgtaggttttcccaacctggcaggggtgtttaaaactatggggcaagaatt #### Drap1_ID988_2 --> 0 - 1 Original Alignment GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTG-GCGGCAGCTGTGCCTGTCATCATCt atgcttcccccagatgttgggagtgcagtttgcctgtgctccactctcagACACGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTGCGCAGCTGCTG-GCCTGTCATCATTtgtgagcaactcaagcccagttagtctgaggtggagtaatgccttacacgt Alignment from CESAR GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt atgcttcccccagatgttgggagtgcagtttgcctgtgctccactctcagACACGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTGCGCAGCTGCTGGCCTGTCATCATTtgtgagcaactcaagcccagttagtctgaggtggagtaatgccttacacat Alignment from Spaln_aa2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccagatgttgggagtgcagtttgcctgtgctccactctcagACACGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTGCGCAGCTGCTGGCCTGTCATCATTTgtgagcaactcaagcccagttagtctgaggtggagtaatgccttacacgt Alignment from Spaln_nt2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccagatgttgggagtgcagtttgcctgtgctccactctcagACACGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTGCGCAGCTGCTGGCCTGTCATCATTTgtgagcaactcaagcccagttagtctgaggtggagtaatgccttacacgt Alignment from Pairagon GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTG-GCGGCAGCTGTGCCTGTCATCATCT atgcttcccccagatgttgggagtgcagtttgcctgtgctccactctcagACACGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTGCGCAGCTGCTG-GCCTGTCATCATTTgtgagcaactcaagcccagttagtctgaggtggagtaatgccttacacgt Alignment from Exonerate_protein2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccagatgttgggagtgcagtttgcctgtgctccactctcagACACGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTGCGCAGCTGCTGGCCTGTCATCATTTgtgagcaactcaagcccagttagtctgaggtggagtaatgccttacacgt Alignment from Exonerate_coding2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccagatgttgggagtgcagtttgcctgtgctccactctcagACACGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTGCGCAGCTGCTGGCCTGTCATCATTTgtgagcaactcaagcccagttagtctgaggtggagtaatgccttacacgt Alignment from GeneWise GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccagatgttgggagtgcagtttgcctgtgctccactctcagACACGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTGCGCAGCTGCTGGCCTGTCATCATTTgtgagcaactcaagcccagttagtctgaggtggagtaatgccttacacgt #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCG-GCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgtgcctgttgatttccccctcagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCACGCAGCTC-GGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtaaattttgttggtggtggtccaccactagagtgagaatggtaagtgca Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgtgcctgttgatttccccctcagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCACGCAGCTCGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtaaattttgttggtggtggtccaccactagagtgagaatggtaagtgca Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgtgcctgttgatttccccctcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCACGCAGCTCGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtaaattttgttggtggtggtccaccactagagtgagaatggtaagtgca Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCG-GCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgtgcctgttgatttccccctcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCACGCAGCTC-GGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtaaattttgttggtggtggtccaccactagagtgagaatggtaagtgca Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCG-GCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgtgcctgttgatttccccctcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCACGCAGCTC-GGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtaaattttgttggtggtggtccaccactagagtgagaatggtaagtgca Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgtgcctgttgatttccccctcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCACGCAGCTCGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtaaattttgttggtggtggtccaccactagagtgagaatggtaagtgca Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgtgcctgttgatttccccctcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCACGCAGCTCGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtaaattttgttggtggtggtccaccactagagtgagaatggtaagtgca Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgtgcctgttgatttccccctcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCACGCAGCTCGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtaaattttgttggtggtggtccaccactagagtgagaatggtaagtgca #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCT-GGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtaggtATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTCGGAGTTT-GGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtaggtATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTCGGAGTTTGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTCGGAGTTTGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTCGGAGTTTGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTCGGAGTTTGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTCGGAGTTTGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTCGGAGTTTGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTCGGAGTTTGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGT-GAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg gaaacatccaggttgtttggctgtgctaccaagcagtcttttttattaagacATAGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTACCAGGCTCATTCCGATGCCAATGTCGAGCCAGGCT-CCAATTGGGACCTAACATTCGTTCCTGTGTGggtaagttggtgtgtcctgcgagtctctaacctccaaggggaaccagtatg Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg gaaacatccaggttgtttggctgtgctaccaagcagtcttttttattaagacATAGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTACCAGGCTCATTCCGATGCCAATGTCGAGCCAGGCTCCAATTGGGACCTAACATTCGTTCCTGTGTGggtaagttggtgtgtcctgcgagtctctaacctccaaggggaaccagtatg Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaggttgtttggctgtgctaccaagcagtcttttttattaagACATAGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTACCAGGCTCATTCCGATGCCAATGTCGAGCCAGGCTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtaagttggtgtgtcctgcgagtctctaacctccaaggggaaccagtatg Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaggttgtttggctgtgctaccaagcagtcttttttattaagACATAGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTACCAGGCTCATTCCGATGCCAATGTCGAGCCAGGCTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtaagttggtgtgtcctgcgagtctctaacctccaaggggaaccagtatg Alignment from Pairagon ------------------------------------------------GGACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGT-GAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG GAAACATCCAGGTTGTTTGGCTGTGCTACCAAGCAGTCTTTTTTATTAAGACATAGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTACCAGGCTCATTCCGATGCCAATGTCGAGCCAGGC-TCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtaagttggtgtgtcctgcgagtctctaacctccaaggggaaccagtatg Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaggttgtttggctgtgctaccaagcagtcttttttattaagACATAGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTACCAGGCTCATTCCGATGCCAATGTCGAGCCAGGCTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtaagttggtgtgtcctgcgagtctctaacctccaaggggaaccagtatg Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaggttgtttggctgtgctaccaagcagtcttttttattaagACATAGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTACCAGGCTCATTCCGATGCCAATGTCGAGCCAGGCTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtaagttggtgtgtcctgcgagtctctaacctccaaggggaaccagtatg Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaggttgtttggctgtgctaccaagcagtcttttttattaagACATAGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATTCTACCAGGCTCATTCCGATGCCAATGTCGAGCCAGGCTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtaagttggtgtgtcctgcgagtctctaacctccaaggggaaccagtatg #### Efemp2_ID1033_6 --> 2 - 1 Original Alignment atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTG-TGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGCTGTCGGT-TAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from CESAR atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGCTGTCGGTTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Spaln_aa2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGCTGTCGGTTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Spaln_nt2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGCTGTCGGTTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Pairagon ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTG-TGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGCTGTCGGT-TAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Exonerate_protein2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGCTGTCGGTTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Exonerate_coding2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGCTGTCGGTTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from GeneWise ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGCTGTCGGTTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac #### Efemp2_ID1034_7 --> 2 - 1 Original Alignment atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAG-CCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg tctcaaattttccgcatgaccaataattggtaacctatatttctgacaagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCTGGCCAAT-CTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAggtagagaggcttgggtggacaagcacaaaaagcccataacttaccatgag Alignment from CESAR atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg tctcaaattttccgcatgaccaataattggtaacctatatttctgacaagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCTGGCCAATCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAggtagagaggcttgggtggacaagcacaaaaagcccataacttaccatgag Alignment from Spaln_aa2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttccgcatgaccaataattggtaacctatatttctgacaagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCTGGCCAATCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtagagaggcttgggtggacaagcacaaaaagcccataacttaccatgag Alignment from Spaln_nt2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttccgcatgaccaataattggtaacctatatttctgacaagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCTGGCCAATCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtagagaggcttgggtggacaagcacaaaaagcccataacttaccatgag Alignment from Pairagon ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAGATATTGAC------------------------------------------ tctcaaattttccgcatgaccaataattggtaacctatatttctgacaagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCTGGCCAATCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGGTAGAGAGGCTTGGGTGGACAAGCACAAAAAGCCCATAACTTACCATGAG Alignment from Exonerate_protein2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttccgcatgaccaataattggtaacctatatttctgacaagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCTGGCCAATCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtagagaggcttgggtggacaagcacaaaaagcccataacttaccatgag Alignment from Exonerate_coding2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttccgcatgaccaataattggtaacctatatttctgacaagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCTGGCCAATCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtagagaggcttgggtggacaagcacaaaaagcccataacttaccatgag Alignment from GeneWise ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttccgcatgaccaataattggtaacctatatttctgacaagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCTGGCCAATCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtagagaggcttgggtggacaagcacaaaaagcccataacttaccatgag #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCA-GTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gggaggcaatctgaacctgcaaaagctgtccccttgctaatctgttgtagctGCCAGACCCTCTAGTGCTGAAGACACAAGTCCTGCTCCGCGTAAGTG-CCCTGCGCCCCAAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAaggtaatcatcatctcagcttctttgagcaagaagaggataccacacatccc Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gggaggcaatctgaacctgcaaaagctgtccccttgctaatctgttgtagctGCCAGACCCTCTAGTGCTGAAGACACAAGTCCTGCTCCGCGTAAGTGCCCTGCGCCCCAAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAaggtaatcatcatctcagcttctttgagcaagaagaggataccacacatccc Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctgcaaaagctgtccccttgctaatctgttgtagCTGCCAGACCCTCTAGTGCTGAAGACACAAGTCCTGCTCCGCGTAAGTGCCCTGCGCCCCAAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaatcatcatctcagcttctttgagcaagaagaggataccacacatccc Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCA-GTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctgcaaaagctgtccccttgctaatctgttgtagCTGCCAGACCCTCTAGTGCTGAAGACACAAGTCCTGCTCCGCGTAAGTG-CCCTGCGCCCCAAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGG---GGTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaatcatcatctcagcttctttgagcaagaagaggataccacacatccc Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCC-----AGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctgcaaaagctgtccccttgctaatctgttgtagCTGCCAGACCCTCTAGTGCTGAAGACACAAGTCCTGCTCCGCGTAAGTG-----CCCTGCGCCCCAAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGG---GGTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaatcatcatctcagcttctttgagcaagaagaggataccacacatccc Alignment from Exonerate_protein2genome gggaggcaatctgaacctgcaaaagctgtccccttgctaatctgttgtagctgccagaccctctagtgctgaagacacaagtcctgctccgcgtaagtgccctgcgccccaagttagagctttccggggccaaggggatccaactgccatgactgatggggtggggcatgagaccctagagcccccagcgactccacctgagacaaggtaatcatcatctcagcttctttgagcaagaagaggataccacacatccc Alignment from Exonerate_coding2genome gggaggcaatctgaacctgcaaaagctgtccccttgctaatctgttgtagctgccagaccctctagtgctgaagacacaagtcctgctccgcgtaagtgccctgcgccccaagttagagctttccggggccaaggggatccaactgccatgactgatggggtggggcatgagaccctagagcccccagcgactccacctgagacaaggtaatcatcatctcagcttctttgagcaagaagaggataccacacatccc Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctgcaaaagctgtccccttgctaatctgttgtagCTGCCAGACCCTCTAGTGCTGAAGACACAAGTCCTGCTCCGCGTAAGTGCCCTGCGCCCCAAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaatcatcatctcagcttctttgagcaagaagaggataccacacatccc #### Ehbp1l1_ID1229_6 --> 1 - 1 Original Alignment gGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTG-AAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagaGATGATGATATGCAAAGTCTCGCCAGCCTCATGAGTGTGCAAGCCTA-TGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTggtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from CESAR gGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagaGATGATGATATGCAAAGTCTCGCCAGCCTCATGAGTGTGCAAGCCTATGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTggtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Spaln_aa2Genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagAGATGATGATATGCAAAGTCTCGCCAGCCTCATGAGTGTGCAAGCCTATGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTGgtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Spaln_nt2Genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagAGATGATGATATGCAAAGTCTCGCCAGCCTCATGAGTGTGCAAGCCTATGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTGgtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Pairagon GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTG-AAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagAGATGATGATATGCAAAGTCTCGCCAGCCTCATGAGTGTGCAAGCCTA-TGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTGgtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Exonerate_protein2genome tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagagatgatgatatgcaaagtctcgccagcctcatgagtgtgcaagcctatgatgtgggaaacctggatgactttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggttcagaccagaggcccccggtctggtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Exonerate_coding2genome tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagagatgatgatatgcaaagtctcgccagcctcatgagtgtgcaagcctatgatgtgggaaacctggatgactttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggttcagaccagaggcccccggtctggtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from GeneWise GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagAGATGATGATATGCAAAGTCTCGCCAGCCTCATGAGTGTGCAAGCCTATGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTGgtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCA-GGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCACGGGCCCCTAC-TGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACTTGCAGTC---CTTCTACAAGAAGGCCGTGCCatgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCACGGGCCCCTACTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCatgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCACGGGCCCCTACTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCATgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCACGGGCCCCTACTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACT---TGCAGTCCTTCTACAAGAAGGCCGTGCCATgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCACGGGCCCCTACTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACT---TGCAGTCCTTCTACAAGAAGGCCGTGCCATgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Exonerate_protein2genome ctcccccacccctgccagagcagagaacaagatatttcactttactttaggagtcaaagggacagcggaaagtattagcaacagttggtgtcaattcagaccatcatgcacgggcccctactgcccagatctcacttcaattgcggcagaagcccaagtccgtcaaagttgtgcatgctgagcttagcctcacacttgcagtccttctacaagaaggccgtgccatgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Exonerate_coding2genome ctcccccacccctgccagagcagagaacaagatatttcactttactttaggagtcaaagggacagcggaaagtattagcaacagttggtgtcaattcagaccatcatgcacgggcccctactgcccagatctcacttcaattgcggcagaagcccaagtccgtcaaagttgtgcatgctgagcttagcctcacacttgcagtccttctacaagaaggccgtgccatgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAAGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCACGGGCCCCTACTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCATgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCC-TCCAAATACCGCAAGAACATCTGGATCAAGAGAg caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACC-TAAGAACATCTGGATCAAGAGAggtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCTAAGAACATCTGGATCAAGAGAggtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATG-CCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACC-TAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCA-GAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGCGAACAGATAA-GAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGCGAACAGATAAGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGCGAACAGATAAGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGCGAACAGATAAGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCA-GAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGCGAACAGATAAG-AACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGCGAACAGATAAGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGCGAACAGATAAGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGCGAACAGATAAGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAA-ACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAACACAG-AGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAACACAGAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAACACAGAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAACACAGAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAACACAGAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAACACAGAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAACACAGAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAACACAGAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGC-GGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg ttccttctgctaacccccttccatggccttcattttctctttttccaaagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTCGGTC-GAGACATTATCGGGGTCACACAGACTGTGTTCGAtggtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg ttccttctgctaacccccttccatggccttcattttctctttttccaaagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTCGGTCGAGACATTATCGGGGTCACACAGACTGTGTTCGAtggtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTCGGTCGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTCGGTCGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTCGGTCGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTCGGTCGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTCGGTCGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTCGGTCGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG acgtggagttttaatgtaggatttcatgagagtctgcttctctcgcacagtCTTGCTGTTCATCCTCGATGGAGTTC-TGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagccagtgtgcagatggcaatgagattatggatcaagttttctgc Alignment from CESAR cCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG acgtggagttttaatgtaggatttcatgagagtctgcttctctcgcacagtCTTGCTGTTCATCCTCGATGGAGTT-CTGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagccagtgtgcagatggcaatgagattatggatcaagttttctgc Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG acgtggagttttaatgtaggatttcatgagagtctgcttctctcgcacagTCTTGCTGTTCATCCTCGATGGAGTTCTGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagccagtgtgcagatggcaatgagattatggatcaagttttctgc Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG acgtggagttttaatgtaggatttcatgagagtctgcttctctcgcacagTCTTGCTGTTCATCCTCGATGGAGTTC-TGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagccagtgtgcagatggcaatgagattatggatcaagttttctgc Alignment from Pairagon CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG acgtggagttttaatgtaggatttcatgagagtctgcttctctcgcacagTCTTGCTGTTCATCCTCGATGGAGTTC-TGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagccagtgtgcagatggcaatgagattatggatcaagttttctgc Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG acgtggagttttaatgtaggatttcatgagagtctgcttctctcgcacagTCTTGCTGTTCATCCTCGATGGAGTTCTGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagccagtgtgcagatggcaatgagattatggatcaagttttctgc Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG acgtggagttttaatgtaggatttcatgagagtctgcttctctcgcacagTCTTGCTGTTCATCCTCGATGGAGTTCTGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagccagtgtgcagatggcaatgagattatggatcaagttttctgc Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG-------------------------------------------------- acgtggagttttaatgtaggatttcatgagagtctgcttctctcgcacagTCTTGCTGTTCATCCTCGATGGAGTTCTGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGGTAAGAGCCAGTGTGCAGATGGCAATGAGATTATGGATCAAGTTTTCTGC #### Eml3_ID2512_11 --> 0 - 0 Original Alignment AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAAT-GGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATCGGACTCC-TGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from CESAR AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATCGGACTCCTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Spaln_aa2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATCGGACTCCTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Spaln_nt2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATCGGACTCCTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Pairagon AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATCGGACTCCTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Exonerate_protein2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATCGGACTCCTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Exonerate_coding2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATCGGACTCCTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from GeneWise AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATCGGACTCCTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGT-GTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTCATCTCAG-TTTGAGGACAACAGGCAGGGGAGGAGCAAAAggtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTCATCTCAGTTTGAGGACAACAGGCAGGGGAGGAGCAAAAggtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTCATCTCAGTTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTG-TCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTCATCTCAG-TTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGT-GTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTCATCTCAG-TTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTCATCTCAGTTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTCATCTCAGTTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTCATCTCAGTTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAAT-GAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccaggTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATCGAGCAAC-CTCAGTTGTCCGGTACAGCCCAggtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccaggTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATCGAGCAACCTCAGTTGTCCGGTACAGCCCAggtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATCGAGCAACCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATCGAGCAACCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATCGAGCAACCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATCGAGCAACCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Exonerate_coding2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATCGAGCAACCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATCGAGCAACCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc #### Eno4_ID12833_5 --> 2 - 0 Original Alignment gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTG-GCGTCACTGAAGCATGATCAG tttcaacgttgccttggaaaagactagacttcattttattttacacttaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCGGTTCAGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGCGCATCAC-GAAACAAGATCAAgtttgttaatgttgtggatgtggaaaaagatatggtggcagtatgtagag Alignment from CESAR gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttcaacgttgccttggaaaagactagacttcattttattttacacttaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCGGTTCAGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGCGCATCACGAAACAAGATCAAgtttgttaatgttgtggatgtggaaaaagatatggtggcagtatgtagag Alignment from Spaln_aa2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttcaacgttgccttggaaaagactagacttcattttattttacacttagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCGGTTCAGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGCGCATCACGAAACAAGATCAAgtttgttaatgttgtggatgtggaaaaagatatggtggcagtatgtagag Alignment from Spaln_nt2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTG-GCGTCACTGAAGCATGATCAG tttcaacgttgccttggaaaagactagacttcattttattttacacttagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCGGTTCAGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGCGCATCAC-GAAACAAGATCAAgtttgttaatgttgtggatgtggaaaaagatatggtggcagtatgtagag Alignment from Pairagon GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTG-GCGTCACTGAAGCATGATCAG tttcaacgttgccttggaaaagactagacttcattttattttacacttagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCGGTTCAGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGCGCATCAC-GAAACAAGATCAAgtttgttaatgttgtggatgtggaaaaagatatggtggcagtatgtagag Alignment from Exonerate_protein2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttcaacgttgccttggaaaagactagacttcattttattttacacttagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCGGTTCAGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGCGCATCACGAAACAAGATCAAgtttgttaatgttgtggatgtggaaaaagatatggtggcagtatgtagag Alignment from Exonerate_coding2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttcaacgttgccttggaaaagactagacttcattttattttacacttagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCGGTTCAGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGCGCATCACGAAACAAGATCAAgtttgttaatgttgtggatgtggaaaaagatatggtggcagtatgtagag Alignment from GeneWise GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttcaacgttgccttggaaaagactagacttcattttattttacacttagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCGGTTCAGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGCGCATCACGAAACAAGATCAAgtttgttaatgttgtggatgtggaaaaagatatggtggcagtatgtagag #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAAGGC-AGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcaggtGAACATCTGTGCAACTTAGAAGAAGGCCAGTCCTGGCA-TGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcaggtGAACATCTGTGCAACTTAGAAGAAGGCCAGTCCTGGCATGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcagGTGAACATCTGTGCAACTTAGAAGAAGGCCAGTCCTGGCATGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGC-AGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcagGTGAACATCTGTGCAACTTAGAAGAAGGCCAGTCCTGGCA-TGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAAGGC-AGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcagGTGAACATCTGTGCAACTTAGAAGAAGGCCAGTCCTGGCA-TGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcagGTGAACATCTGTGCAACTTAGAAGAAGGCCAGTCCTGGCATGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Exonerate_coding2genome GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcaGGTGAACATCTGTGCAACTTAGAAGAAGGCCAGTCCTGGCATGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from GeneWise GCACCACCGGTGAGGTACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG tgttgcaggcaacttgataagc------------CATGGTTCTTTCTCAGGTGAACATCTGTGCAACTTAGAAGAAGGCCAGTCCTGGCATGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTC-CTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaaatactatctaatgatgttcacctaaagctctgtttcctttcagAAAGTACTATCTGATGAATTTCGAGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCCTTGGTAT-CCTACTTCGCATTCCTCTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACCGTTCAGgtaaggtttacctctcagtctaaacctcagataccaaaagagtggtctgt Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaaatactatctaatgatgttcacctaaagctctgtttcctttcagAAAGTACTATCTGATGAATTTCGAGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCCTTGGTATCCTACTTCGCATTCCTCTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACCGTTCAGgtaaggtttacctctcagtctaaacctcagataccaaaagagtggtctgt Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaaatactatctaatgatgttcacctaaagctctgtttcctttcagAAAGTACTATCTGATGAATTTCGAGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCCTTGGTATCCTACTTCGCATTCCTCTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACCGTTCAGgtaaggtttacctctcagtctaaacctcagataccaaaagagtggtctgt Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaaatactatctaatgatgttcacctaaagctctgtttcctttcagAAAGTACTATCTGATGAATTTCGAGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCCTTGGTATCCTACTTCGCATTCCTCTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACCGTTCAGgtaaggtttacctctcagtctaaacctcagataccaaaagagtggtctgt Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaaatactatctaatgatgttcacctaaagctctgtttcctttcagAAAGTACTATCTGATGAATTTCGAGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCCTTGGTATCCTACTTCGCATTCCTCTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACCGTTCAGgtaaggtttacctctcagtctaaacctcagataccaaaagagtggtctgt Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaaatactatctaatgatgttcacctaaagctctgtttcctttcagAAAGTACTATCTGATGAATTTCGAGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCCTTGGTATCCTACTTCGCATTCCTCTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACCGTTCAGgtaaggtttacctctcagtctaaacctcagataccaaaagagtggtctgt Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaaatactatctaatgatgttcacctaaagctctgtttcctttcagAAAGTACTATCTGATGAATTTCGAGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCCTTGGTATCCTACTTCGCATTCCTCTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACCGTTCAGgtaaggtttacctctcagtctaaacctcagataccaaaagagtggtctgt Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaaatactatctaatgatgttcacctaaagctctgtttcctttcagAAAGTACTATCTGATGAATTTCGAGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCCTTGGTATCCTACTTCGCATTCCTCTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACCGTTCAGgtaaggtttacctctcagtctaaacctcagataccaaaagagtggtctgt #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGT-TGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACC---TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTCTGGCTAC-GCATGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTCTGGCTACGCATGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTCTGGCTACGCATGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTCTGGCTACGCATGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Pairagon GCTCAGGCAGGT-TGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTCTGGCTAC-GCATGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTCTGGCTACGCATGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTCTGGCTACGCATGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTCTGGCTACGCATGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAAC-AACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACCAACTGGT-CAGTGGACACCTGAATTTCCAGATTGAACACcagtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACCAACTGGTCAGTGGACACCTGAATTTCCAGATTGAACACcagtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACCAACTGGTCAGTGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACCAACTGGTCAGTGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAA-CAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACCAACTGG-TCAGTGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACCAACTGGTCAGTGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACCAACTGGTCAGTGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACCAACTGGTCAGTGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc #### Fads3_ID2663_6 --> 0 - 1 Original Alignment TATGGCAAGAAGAAACGCAGA-TACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGa ctgcgtctagaggagctgtttcccctggcctctctcctgttgtttttcagTATGGTAAGAAGAAACAACGACTACCTGC-ATACAATCATCAACATCTATACTTCTTCCTGggtgagtggtgccagcaagcatttattggtggcagttggcagtcctaaggt Alignment from CESAR TATGGCAAGAAGAAACGCAGATACCTGCCC---TACAACCACCAGCATCTATACTTCTTCCTGa ctgcgtctagaggagctgtttcccctggcctctctcctgttgtttttcagTATGGTAAGAAGAAACAACGA---CTACCTGCATACAATCATCAACATCTATACTTCTTCCTGggtgagtggtgccagcaagcatttattggtggcagttggcagtcctaaggt Alignment from Spaln_aa2Genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA ctgcgtctagaggagctgtttcccctggcctctctcctgttgtttttcagTATGGTAAGAAGAAACAACGACTACCTGCATACAATCATCAACATCTATACTTCTTCCTGGgtgagtggtgccagcaagcatttattggtggcagttggcagtcctaaggt Alignment from Spaln_nt2Genome TATGGCAAGAAGAAACGCAGA-TACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA ctgcgtctagaggagctgtttcccctggcctctctcctgttgtttttcagTATGGTAAGAAGAAACAACGACTACCTG-CATACAATCATCAACATCTATACTTCTTCCTGGgtgagtggtgccagcaagcatttattggtggcagttggcagtcctaaggt Alignment from Pairagon TATGGCAAGAAGAAAC-----------GCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA ctgcgtctagaggagctgtttcccctggcctctctcctgttgtttttcagTATGGTAAGAAGAAACAACGACTACCTGCA-----------TACAATCATCAACATCTATACTTCTTCCTGGgtgagtggtgccagcaagcatttattggtggcagttggcagtcctaaggt Alignment from Exonerate_protein2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA ctgcgtctagaggagctgtttcccctggcctctctcctgttgtttttcagTATGGTAAGAAGAAACAACGACTACCTGCATACAATCATCAACATCTATACTTCTTCCTGGgtgagtggtgccagcaagcatttattggtggcagttggcagtcctaaggt Alignment from Exonerate_coding2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA ctgcgtctagaggagctgtttcccctggcctctctcctgttgtttttcagTATGGTAAGAAGAAACAACGACTACCTGCATACAATCATCAACATCTATACTTCTTCCTGGgtgagtggtgccagcaagcatttattggtggcagttggcagtcctaaggt Alignment from GeneWise TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA ctgcgtctagaggagctgtttcccctggcctctctcctgttgtttttcagTATGGTAAGAAGAAACAACGACTACCTGCATACAATCATCAACATCTATACTTCTTCCTGGgtgagtggtgccagcaagcatttattggtggcagttggcagtcctaaggt #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCT-GCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTCGCCA-TTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGaggtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTCGCCATTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGaggtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTCGCCATTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTCGCCATTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTCGCCATTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTCGCCATTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTCGCCATTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTCGCCATTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATC-CCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacaggGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCCAAGA-GATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacaggGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCCAAGAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCCAAGAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCCAAGAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCCAAGAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCCAAGAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCCAAGAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGCTGGCAGCCACC-- actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCCAAGAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGGCAAGTGCTCTTAAgtacatactagtggtgaaagtgtctgtgctttaagt #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATT-GACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACT------------TCATCACTCTTCATTCGACTGGT-CAGTGGTCACCTTAATTTTCAAATTGAACACtagtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACT------------TCATCACTCTTCATTCGACTGGTCAGTGGTCACCTTAATTTTCAAATTGAACACtagtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACT------------TCATCACTCTTCATTCGACTGGTCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATT-GACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACTT------------CATCACTCTTCATTCGACTGG-TCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATT-GACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACTT------------CATCACTCTTCATTCGACTGG-TCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACT------------TCATCACTCTTCATTCGACTGGTCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Exonerate_coding2genome CTGGCAG ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagttggcagccacttcatcactcttcattcgactggtcagtggtcaccttaattttcaaattgaacactagtagagattgcattgaggggttagtggcaggacccaaacctagAGCTATG Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACT------------TCATCACTCTTCATTCGACTGGTCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG-CAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCCGACCTCGAC-ACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCCGACCTCGACACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAG------CCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCCGACCTCGACACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCCGACCTCGACACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Pairagon AGCCGACTGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttag-------TGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCCGACCTCGACACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCCGACCTCGACACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCCGACCTCGACACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCCGACCTCGACACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAG-CCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCCTGCAGCAG-CAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGgggtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCCTGCAGCAGCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGgggtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCCTGCAGCAGCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCCTGCAGCAGCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGC-----CAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCC-----CTGCAGCAGCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCCTGCAGCAGCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCCTGCAGCAGCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCCTGCAGCAGCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCAC-GAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACCAAAA-GTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAacgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACCAAAAGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAacgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACCAAAAGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACCAAAAGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACCAAAAGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACCAAAAGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACCAAAAGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACCAAAAGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct #### Fau_ID1403_3 --> 2 - 0 Original Alignment gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTG-AGAGGTCAGACTCCCAAG ccctgtgattctgctaattagtttgaactttatttataaatgttttaaaggcATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTACAGAG-CCAGACTCCCAAAgtaagaggcaggggtgaagcttcctttaagacagaatgagcatggacagc Alignment from CESAR gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ccctgtgattctgctaattagtttgaactttatttataaatgttttaaaggcATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTACAGAGCCAGACTCCCAAAgtaagaggcaggggtgaagcttcctttaagacagaatgagcatggacagc Alignment from Spaln_aa2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ccctgtgattctgctaattagtttgaactttatttataaatgttttaaagGCATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTACAGAGCCAGACTCCCAAAgtaagaggcaggggtgaagcttcctttaagacagaatgagcatggacagc Alignment from Spaln_nt2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ccctgtgattctgctaattagtttgaactttatttataaatgttttaaagGCATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTACAGAGCCAGACTCCCAAAgtaagaggcaggggtgaagcttcctttaagacagaatgagcatggacagc Alignment from Pairagon GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ccctgtgattctgctaattagtttgaactttatttataaatgttttaaagGCATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTACAGAGCCAGACTCCCAAAgtaagaggcaggggtgaagcttcctttaagacagaatgagcatggacagc Alignment from Exonerate_protein2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ccctgtgattctgctaattagtttgaactttatttataaatgttttaaagGCATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTACAGAGCCAGACTCCCAAAgtaagaggcaggggtgaagcttcctttaagacagaatgagcatggacagc Alignment from Exonerate_coding2genome ccctgtgattctgctaattagtttgaactttatttataaatgttttaaaggcatagttcatggctccctggcccgagctggaaaagtacagagccagactcccaaagtaagaggcaggggtgaagcttcctttaagacagaatgagcatggacagc Alignment from GeneWise GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG ccctgtgattctgctaattagtttgaactttatttataaatgttttaaagGCATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTACAGAGCCAGACTCCCAAAgtaagaggcaggggtgaagcttcctttaagacagaatgagcatggacagc #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCC-ACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacagtcacgttgtggcatggtgcttgtctctctacccttcagGGAGGCCCAGGAGGGGGGCCTGCGCTGGGCAGGGAGCCACACAT-CCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtgagtagttggggttggtttatccatttcaggccccgggtccccaagca Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacagtcacgttgtggcatggtgcttgtctctctacccttcagGGAGGCCCAGGAGGGGGGCCTGCGCTGGGCAGGGAGCCACACATCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtgagtagttggggttggtttatccatttcaggccccgggtccccaagca Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacagtcacgttgtggcatggtgcttgtctctctacccttcagGGAGGCCCAGGAGGGGGGCCTGCGCTGGGCAGGGAGCCACACATCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtgagtagttggggttggtttatccatttcaggccccgggtccccaagca Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacagtcacgttgtggcatggtgcttgtctctctacccttcagGGAGGCCCAGGAGGGGGGCCTGCGCTGGGCAGGGAGCCACACATCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtgagtagttggggttggtttatccatttcaggccccgggtccccaagca Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacagtcacgttgtggcatggtgcttgtctctctacccttcagGGAGGCCCAGGAGGGGGGCCTGCGCTGGGCAGGGAGCCACACATCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtgagtagttggggttggtttatccatttcaggccccgggtccccaagca Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacagtcacgttgtggcatggtgcttgtctctctacccttcagGGAGGCCCAGGAGGGGGGCCTGCGCTGGGCAGGGAGCCACACATCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtgagtagttggggttggtttatccatttcaggccccgggtccccaagca Alignment from Exonerate_coding2genome CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacagtcacgttgtggcatggtgcttgtctctctacccttCAGGGAGGCCCAGGAGGGGGGCCTGCGCTGGGCAGGGAGCCACACATCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtgagtagttggggttggtttatccatttcaggccccgggtccccaagca Alignment from GeneWise CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacagtcacgttgtggcatggtgcttgtctctctacccttCAGGGAGGCCCAGGAGGGGGGCCTGCGCTGGGCAGGGAGCCACACATCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtgagtagttggggttggtttatccatttcaggccccgggtccccaagca #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCG-CCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag cagggccttctagtgttatatccctcaccctgttttaatttaattttcagtgAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCCAA-GCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAaggtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag cagggccttctagtgttatatccctcaccctgttttaatttaattttcagtgAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCCAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAaggtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCCAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCCAAGCT------CCTGCTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTC-------------------------CAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACT-------------------------------ATGTTCACCCCCCAAGCTCCTGCTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCCAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCCAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCCAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTT-GCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagagagataaagagcataggtgaccaactgttttcctcaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTCGCCTTCC-CGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagagagataaagagcataggtgaccaactgttttcctcaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTCGCCTTCCCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTCGCCTTCCCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTCGCCTTCCCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTCGCCTTCCCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTCGCCTTCCCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTCGCCTTCCCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTCGCCTTCCCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGG-CTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCCTTTTTC-TAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCcggtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCcggtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from GeneWise --------------------------------------------------TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG AGATGTGTTGTAGTAAGTTTTTGGTGAATCCTAAGTGTCTTCCTCCTCAGTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTT-GTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg caatctctcctgggcgttgcatggtctgccttccttccttcttttcctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATTTTCTCCC-TGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGgggtgagattggcatataatccaagttgcagtgaatgctataataaaggcgt Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg caatctctcctgggcgttgcatggtctgccttccttccttcttttcctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATTTTCTCCCTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGgggtgagattggcatataatccaagttgcagtgaatgctataataaaggcgt Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG caatctctcctgggcgttgcatggtctgccttccttccttcttttcctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATTTTCTCCCTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtgagattggcatataatccaagttgcagtgaatgctataataaaggcgt Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG caatctctcctgggcgttgcatggtctgccttccttccttcttttcctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATTTTCTCCCTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtgagattggcatataatccaagttgcagtgaatgctataataaaggcgt Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG caatctctcctgggcgttgcatggtctgccttccttccttcttttcctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATTTTCTCCCTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtgagattggcatataatccaagttgcagtgaatgctataataaaggcgt Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG caatctctcctgggcgttgcatggtctgccttccttccttcttttcctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATTTTCTCCCTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtgagattggcatataatccaagttgcagtgaatgctataataaaggcgt Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG caatctctcctgggcgttgcatggtctgccttccttccttcttttcctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATTTTCTCCCTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtgagattggcatataatccaagttgcagtgaatgctataataaaggcgt Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG caatctctcctgggcgttgcatggtctgccttccttccttcttttcctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATTTTCTCCCTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtgagattggcatataatccaagttgcagtgaatgctataataaaggcgt #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAG-GAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAACGAAA-GGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtgagcaattggcaagtcttaatagtaatgtttccctcttttccctgcag Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAACGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtgagcaattggcaagtcttaatagtaaaagccttaacctgttttgaaag Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAACGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaatgtttccctcttttccctgcag Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAACGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaatgtttccctcttttccctgcag Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAACGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaatgtttccctcttttccctgcag Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAACGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaatgtttccctcttttccctgcag Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAACGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaatgtttccctcttttccctgcag Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAACGAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaatgtttccctcttttccctgcag #### Ganab_ID2471_10 --> 1 - 0 Original Alignment gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCA-CACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG---CTGGCACCACAGCTTTC-TCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from CESAR gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG---CTGGCACCACAGCTTTCTCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Spaln_aa2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG---CTGGCACCACAGCTTTCTCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Spaln_nt2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCAC-ACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCT ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG---CTGGCACCACAGCTTTC-TCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACAAAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Pairagon GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCA-CACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG---CTGGCACCACAGCTTTC-TCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACAC------AAAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Exonerate_protein2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCT ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG---CTGGCACCACAGCTTTCTCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACAAAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Exonerate_coding2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCT ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG---CTGGCACCACAGCTTTCTCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACAAAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from GeneWise GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTGCTG---GCACCACAGCTTTCTCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg #### Ganab_ID2472_11 --> 0 - 1 Original Alignment ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGT-GGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg acatttgagtacagtgccagaaggtcctagtggtggtattcttttgtcagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTCGGCATTA-TGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtatggatgtttttcttccttacaaataaatgctataaagtatttacact Alignment from CESAR ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg acatttgagtacagtgccagaaggtcctagtggtggtattcttttgtcagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTCGGCATTATGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtatggatgtttttcttccttacaaataaatgctataaagtatttacact Alignment from Spaln_aa2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG acatttgagtacagtgccagaaggtcctagtggtggtattcttttgtcagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTCGGCATTATGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtatggatgtttttcttccttacaaataaatgctataaagtatttacact Alignment from Spaln_nt2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG acatttgagtacagtgccagaaggtcctagtggtggtattcttttgtcagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTCGGCATTATGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtatggatgtttttcttccttacaaataaatgctataaagtatttacact Alignment from Pairagon ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGT-GGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG acatttgagtacagtgccagaaggtcctagtggtggtattcttttgtcagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTCGGCATTA-TGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtatggatgtttttcttccttacaaataaatgctataaagtatttacact Alignment from Exonerate_protein2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG acatttgagtacagtgccagaaggtcctagtggtggtattcttttgtcagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTCGGCATTATGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtatggatgtttttcttccttacaaataaatgctataaagtatttacact Alignment from Exonerate_coding2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG acatttgagtacagtgccagaaggtcctagtggtggtattcttttgtcagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTCGGCATTATGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtatggatgtttttcttccttacaaataaatgctataaagtatttacact Alignment from GeneWise ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG acatttgagtacagtgccagaaggtcctagtggtggtattcttttgtcagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTCGGCATTATGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtatggatgtttttcttccttacaaataaatgctataaagtatttacact #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGG-AACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagggTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGCAACTACC-TGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagggTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGCAACTACCTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGCAACTACCTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGCAACTACCTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGG-AACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGCAACTACC-TGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGCAACTACCTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGCAACTACCTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGCAACTACCTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATA-CAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACCAGTGTT-AGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTTTCTCTTCAGGTTTCCAGCGCTTTggtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACCAGTGTTAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTTTCTCTTCAGGTTTCCAGCGCTTTggtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACCAGTGTTAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACCAGTGTTAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACCAGTGTTAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACCAGTGTTAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACCAGTGTTAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACCAGTGTTAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGG-GACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg cttctactattttgtgggtactcagaattgtcttactctccaccctaaaggaGCTGTGTGGACAGGGCGACAACACTG-TGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAggtaagaggagtaatcatttggggtcttgcattggatgcttgtggtgggta Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg cttctactattttgtgggtactcagaattgtcttactctccaccctaaaggaGCTGTGTGGACAGGGCGACAACACTGTGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAggtaagaggagtaatcatttggggtcttgcattggatgcttgtggtgggta Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cttctactattttgtgggtactcagaattgtcttactctccaccctaaagGAGCTGTGTGGACAGGGCGACAACACTGTGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagaggagtaatcatttggggtcttgcattggatgcttgtggtgggta Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cttctactattttgtgggtactcagaattgtcttactctccaccctaaagGAGCTGTGTGGACAGGGCGACAACACTGTGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagaggagtaatcatttggggtcttgcattggatgcttgtggtgggta Alignment from Pairagon GAGCTGTGTGGACAGGG-GACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cttctactattttgtgggtactcagaattgtcttactctccaccctaaagGAGCTGTGTGGACAGGGCGACAACACTG-TGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagaggagtaatcatttggggtcttgcattggatgcttgtggtgggta Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cttctactattttgtgggtactcagaattgtcttactctccaccctaaagGAGCTGTGTGGACAGGGCGACAACACTGTGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagaggagtaatcatttggggtcttgcattggatgcttgtggtgggta Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cttctactattttgtgggtactcagaattgtcttactctccaccctaaagGAGCTGTGTGGACAGGGCGACAACACTGTGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagaggagtaatcatttggggtcttgcattggatgcttgtggtgggta Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cttctactattttgtgggtactcagaattgtcttactctccaccctaaagGAGCTGTGTGGACAGGGCGACAACACTGTGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagaggagtaatcatttggggtcttgcattggatgcttgtggtgggta #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACT-CTCTTTGTTGCTCTCAGTCCCCAG gcaaagcatgaaaggaatgaagtcacctactgaagccctcctcctcacagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCCTTTTCGTTG-TCTCAGTCCCCAGgtaagtatccaatcaccaggactgggttaattatagattcattttaaatg Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaagcatgaaaggaatgaagtcacctactgaagccctcctcctcacagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCCTTTTCGTTGTCTCAGTCCCCAGgtaagtatccaatcaccaggactgggttaattatagattcattttaaatg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaagcatgaaaggaatgaagtcacctactgaagccctcctcctcacagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCCTTTTCGTTGTCTCAGTCCCCAGgtaagtatccaatcaccaggactgggttaattatagattcattttaaatg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaagcatgaaaggaatgaagtcacctactgaagccctcctcctcacagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCCTTTTCGTTGTCTCAGTCCCCAGgtaagtatccaatcaccaggactgggttaattatagattcattttaaatg Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaagcatgaaaggaatgaagtcacctactgaagccctcctcctcacagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCCTTTTCGTTGTCTCAGTCCCCAGgtaagtatccaatcaccaggactgggttaattatagattcattttaaatg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaagcatgaaaggaatgaagtcacctactgaagccctcctcctcacagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCCTTTTCGTTGTCTCAGTCCCCAGgtaagtatccaatcaccaggactgggttaattatagattcattttaaatg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaagcatgaaaggaatgaagtcacctactgaagccctcctcctcacagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCCTTTTCGTTGTCTCAGTCCCCAGgtaagtatccaatcaccaggactgggttaattatagattcattttaaatg Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaagcatgaaaggaatgaagtcacctactgaagccctcctcctcacagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCCTTTTCGTTGTCTCAGTCCCCAGgtaagtatccaatcaccaggactgggttaattatagattcattttaaatg #### Ganab_ID2485_24 --> 1 - 1 Original Alignment tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATT-GAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg gccctgcctccagggttctgctatgtgttcttacctatttgtggttatagcCTAGCAGACCCTAAGGGCCATCAGGAGACACCTATCTGGGTGCGAGCAAGTTG-CATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGggtgagtaaagatgcagtatgaattgatagaaacagtattagagataacca Alignment from CESAR tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTC---ATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg gccctgcctccagggttctgctatgtgttcttacctatttgtggttatagcCTAGCAGACCCTAAGGGCCATCAGGAGACACCTATCTGGGTG---CGAGCAAGTTGCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGggtgagtaaagatgcagtatgaattgatagaaacagtattagagataacca Alignment from Spaln_aa2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttctgctatgtgttcttacctatttgtggttatagCCTAGCAGACCCTAAGGGCCATCAGGAGACACCTATCTGGGTGCGAGCAAGTTGCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtgagtaaagatgcagtatgaattgatagaaacagtattagagataacca Alignment from Spaln_nt2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttctgctatgtgttcttacctatttgtggttatagCCTAGCAGACCCTAAGGGCCATCAGGAGACACCTATCTGGGTGCGAGCAAGTTGCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtgagtaaagatgcagtatgaattgatagaaacagtattagagataacca Alignment from Pairagon TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGAT-TGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttctgctatgtgttcttacctatttgtggttatagCCTAGCAGACCCTAAGGGCCATCAGGAGACACCTATCTGGGTGCGAGCAAGTTG-CATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtgagtaaagatgcagtatgaattgatagaaacagtattagagataacca Alignment from Exonerate_protein2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttctgctatgtgttcttacctatttgtggttatagCCTAGCAGACCCTAAGGGCCATCAGGAGACACCTATCTGGGTGCGAGCAAGTTGCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtgagtaaagatgcagtatgaattgatagaaacagtattagagataacca Alignment from Exonerate_coding2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttctgctatgtgttcttacctatttgtggttatagCCTAGCAGACCCTAAGGGCCATCAGGAGACACCTATCTGGGTGCGAGCAAGTTGCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtgagtaaagatgcagtatgaattgatagaaacagtattagagataacca Alignment from GeneWise TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttctgctatgtgttcttacctatttgtggttatagCCTAGCAGACCCTAAGGGCCATCAGGAGACACCTATCTGGGTGCGAGCAAGTTGCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtgagtaaagatgcagtatgaattgatagaaacagtattagagataacca #### Gbf1_ID9784_6 --> 2 - 2 Original Alignment agTTATTGAGAAAATCCGCAGAG-CACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAag aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagagTTATTGAGAAAATCTGCGGAGCCACACTCTGG-GGACATGGTGCAGCTGCTCTTCACAaggtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from CESAR agTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAag aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagagTTATTGAGAAAATCTGCGGAGCCACACTCTGGGGACATGGTGCAGCTGCTCTTCACAaggtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Spaln_aa2Genome AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCCACACTCTGGGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Spaln_nt2Genome AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCCACACTCTGGGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Pairagon AGTTATTGAGAAAATCCGCAGAG-CACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCCACACTCTGG-GGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Exonerate_protein2genome AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCCACACTCTGGGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Exonerate_coding2genome AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCCACACTCTGGGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from GeneWise AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCCACACTCTGGGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGC-AACCCAGAAACTAACAAGt acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---CAACC-AGATGCTAACAAGtgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---CAACCAGATGCTAACAAGtgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---CAACCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT--CAA-CCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---CAACCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---CAACCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---CAACCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---CAACCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTT-CATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTCTACTTTCCCA-TGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTCTACTTTCCCATGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTCTACTTTCCCATGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTC-ATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTCTACTTTCCCA-TGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTC-ATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTCTACTTTCCCA-TGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTCTACTTTCCCATGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTCTACTTTCCCATGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTCTACTTTCCCATGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcaggAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAG-TTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcaggAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAG-TTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAG-TTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg gacttagcaattgttcccaggtagaagattttgtctcctccacctggcagGTAGAAGATTTTCGTAG-CCCCAATGGCAAGATCTCTTTACAACATAAGGAGATACCATCAAACcagtaagttttgattaataagtgggctagagaagcagatatgatcagttcta Alignment from CESAR GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg gacttagcaattgttcccaggtagaagattttgtctcctccacctggcagGTAGAAGATTTTCGTAGCCCCAATGGCAAGATCTCTTTACAACATAAGGAGATACCATCAAACcagtaagttttgattaataagtgggctagagaagcagatatgatcagttcta Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcaattgttcccaggtagaagattttgtctcctccacctggcagGTAGAAGATTTTCGTAGCCCCAATGGCAAGATCTCTTTACAACATAAGGAGATACCATCAAACCAgtaagttttgattaataagtgggctagagaagcagatatgatcagttcta Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcaattgttcccaggtagaagattttgtctcctccacctggcagGTAGAAGATTTTCGTAGCCCCAATGGCAAGATCTCTTTACAACATAAGGAGATACCATCAAACCAgtaagttttgattaataagtgggctagagaagcagatatgatcagttcta Alignment from Pairagon GTAGAAGATTTTGT---------------------GGAT---------CCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcaattgttcccagGTAGAAGATTTTGTCTCCTCCACCTGGCAGGTAGAAGATTTTCGTAGCCCCAATGGCAAGATCTCTTTACAACATAAGGAGATACCATCAAACCAgtaagttttgattaataagtgggctagagaagcagatatgatcagttcta Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcaattgttcccaggtagaagattttgtctcctccacctggcagGTAGAAGATTTTCGTAGCCCCAATGGCAAGATCTCTTTACAACATAAGGAGATACCATCAAACCAgtaagttttgattaataagtgggctagagaagcagatatgatcagttcta Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcaattgttcccaggtagaagattttgtctcctccacctggcagGTAGAAGATTTTCGTAGCCCCAATGGCAAGATCTCTTTACAACATAAGGAGATACCATCAAACCAgtaagttttgattaataagtgggctagagaagcagatatgatcagttcta Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcaattgttcccaggtagaagattttgtctcctccacctggcagGTAGAAGATTTTCGTAGCCCCAATGGCAAGATCTCTTTACAACATAAGGAGATACCATCAAACCAgtaagttttgattaataagtgggctagagaagcagatatgatcagttcta #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTT-GTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagaGGAAAGTCAACAGTTTTGAGCTTTCGTAAGCT-GCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagaGGAAAGTCAACAGTTTTGAGCTTTCGTAAGCTGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTCGTAAGCTGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTCGTAAGCTGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTT-GTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTCGTAAGCT-GCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTCGTAAGCTGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTCGTAAGCTGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTCGTAAGCTGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAG-CTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCCTGGAAT-ACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCCTGGAATACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCCTGGAATACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCCTGGAATACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCCTGGAATACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCCTGGAATACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCCTGGAATACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCCTGGAATACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGAT-GCCCTGGAGTGGGAGTCCTGTTTTAACAAG actcaaacacacacttgatgacttacacatctccctcacccccatcccaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCACGCACTTCTCGTGCCCGATCTGCAGAAACTGGATCGCCCTGGAGT-GGAATCTTGTTCTAACAAGgtaagtcttcaagtggacagcagtccaaataaccctgcctgggctcaaga Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGAT-GCCCTGGAGTGGGAGTCCTGTTTTAACAAG actcaaacacacacttgatgacttacacatctccctcacccccatcccaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCACGCACTTCTCGTGCCCGATCTGCAGAAACTGGATCGCCCTGGAGT-GGAATCTTGTTCTAACAAGgtaagtcttcaagtggacagcagtccaaataaccctgcctgggctcaaga Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG actcaaacacacacttgatgacttacacatctccctcacccccatcccagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCACGCACTTCTCGTGCCCGATCTGCAGAAACTGGATCGCCCTGGAGTGGAATCTTGTTCTAACAAGgtaagtcttcaagtggacagcagtccaaataaccctgcctgggctcaaga Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGAT-GCCCTGGAGTGGGAGTCCTGTTTTAACAAG actcaaacacacacttgatgacttacacatctccctcacccccatcccagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCACGCACTTCTCGTGCCCGATCTGCAGAAACTGGATCGCCCTGGAGT-GGAATCTTGTTCTAACAAGgtaagtcttcaagtggacagcagtccaaataaccctgcctgggctcaaga Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGAT-GCCCTGGAGTGGGAGTCCTGTTTTAACAAG actcaaacacacacttgatgacttacacatctccctcacccccatcccagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCACGCACTTCTCGTGCCCGATCTGCAGAAACTGGATCGCCCTGGAGT-GGAATCTTGTTCTAACAAGgtaagtcttcaagtggacagcagtccaaataaccctgcctgggctcaaga Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG actcaaacacacacttgatgacttacacatctccctcacccccatcccagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCACGCACTTCTCGTGCCCGATCTGCAGAAACTGGATCGCCCTGGAGTGGAATCTTGTTCTAACAAGgtaagtcttcaagtggacagcagtccaaataaccctgcctgggctcaaga Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG actcaaacacacacttgatgacttacacatctccctcacccccatcccagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCACGCACTTCTCGTGCCCGATCTGCAGAAACTGGATCGCCCTGGAGTGGAATCTTGTTCTAACAAGgtaagtcttcaagtggacagcagtccaaataaccctgcctgggctcaaga Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG actcaaacacacacttgatgacttacacatctccctcacccccatcccagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCACGCACTTCTCGTGCCCGATCTGCAGAAACTGGATCGCCCTGGAGTGGAATCTTGTTCTAACAAGgtaagtcttcaagtggacagcagtccaaataaccctgcctgggctcaaga #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA-CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACCACT-GCGTGATGAACTCTTCAAGCAGACTGTCATCCAAggtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACCACTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAggtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACCACTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACCACTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACCACTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACCACTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACCACTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACCACTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag #### Gif_ID3278_2 --> 2 - 1 Original Alignment ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTG-ATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAg gtcattctgtggagcagcacacatgtagacacctgttcctatccttgcagctGTTCCCCCAGATCAGCAGCCTTGGGTTGAGGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCAAACCCAACCATG---CATTGCCAAGA-CCTGGCTGGTGCATACATTGTGGAACCTCAAAAACTCCTGACTTACCAGCTAATGGCCAGTGACAGTGCAggtaagtcactaagggcacatcctcaccctgagtctctcatgctcacccaa Alignment from CESAR ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAg gtcattctgtggagcagcacacatgtagacacctgttcctatccttgcagctGTTCCCCCAGATCAGCAGCCTTGGGTTGAGGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCAAACCCAACCATGCAT---TGCCAAGACCTGGCTGGTGCATACATTGTGGAACCTCAAAAACTCCTGACTTACCAGCTAATGGCCAGTGACAGTGCAggtaagtcactaagggcacatcctcaccctgagtctctcatgctcacccaa Alignment from Spaln_aa2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagcagcacacatgtagacacctgttcctatccttgcagCTGTTCCCCCAGATCAGCAGCCTTGGGTTGAGGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCAAACCCAACCATGCAT---TGCCAAGACCTGGCTGGTGCATACATTGTGGAACCTCAAAAACTCCTGACTTACCAGCTAATGGCCAGTGACAGTGCAGgtaagtcactaagggcacatcctcaccctgagtctctcatgctcacccaa Alignment from Spaln_nt2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagcagcacacatgtagacacctgttcctatccttgcagCTGTTCCCCCAGATCAGCAGCCTTGGGTTGAGGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCAAACCCAACCATGC--ATTGCCAAG-ACCTGGCTGGTGCATACATTGTGGAACCTCAAAAACTCCTGACTTACCAGCTAATGGCCAGTGACAGTGCAGgtaagtcactaagggcacatcctcaccctgagtctctcatgctcacccaa Alignment from Pairagon CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagcagcacacatgtagacacctgttcctatccttgcagCTGTTCCCCCAGATCAGCAGCCTTGGGTTGAGGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCAAACCCAACCATGC--ATTGCCAAG-ACCTGGCTGGTGCATACATTGTGGAACCTCAAAAACTCCTGACTTACCAGCTAATGGCCAGTGACAGTGCAGgtaagtcactaagggcacatcctcaccctgagtctctcatgctcacccaa Alignment from Exonerate_protein2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagcagcacacatgtagacacctgttcctatccttgcagCTGTTCCCCCAGATCAGCAGCCTTGGGTTGAGGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCAAACCCAACC---ATGCATTGCCAAGACCTGGCTGGTGCATACATTGTGGAACCTCAAAAACTCCTGACTTACCAGCTAATGGCCAGTGACAGTGCAGgtaagtcactaagggcacatcctcaccctgagtctctcatgctcacccaa Alignment from Exonerate_coding2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagcagcacacatgtagacacctgttcctatccttgcagCTGTTCCCCCAGATCAGCAGCCTTGGGTTGAGGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCAAACCCAACC---ATGCATTGCCAAGACCTGGCTGGTGCATACATTGTGGAACCTCAAAAACTCCTGACTTACCAGCTAATGGCCAGTGACAGTGCAGgtaagtcactaagggcacatcctcaccctgagtctctcatgctcacccaa Alignment from GeneWise CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagcagcacacatgtagacacctgttcctatccttgcagCTGTTCCCCCAGATCAGCAGCCTTGGGTTGAGGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCAAACCCAACC---ATGCATTGCCAAGACCTGGCTGGTGCATACATTGTGGAACCTCAAAAACTCCTGACTTACCAGCTAATGGCCAGTGACAGTGCAGgtaagtcactaagggcacatcctcaccctgagtctctcatgctcacccaa #### Gldc_ID6401_14 --> 0 - 0 Original Alignment GGATCCTGCACCATGAAGCTC-AATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATA-CTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from CESAR GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATACTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Spaln_aa2Genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATACTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Spaln_nt2Genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATACTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Pairagon GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATACTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Exonerate_protein2genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATACTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Exonerate_coding2genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATACTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from GeneWise GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATACTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTC-CGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagtTACCACTCAGAAACTAATCTTGTTCCCTTACA-GAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagtTACCACTCAGAAACTAATCTTGTTCCCTTACAGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCCTTACAGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCCTTACAGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCCTTACAGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCCTTACAGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCCTTACAGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCCTTACAGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt #### Gm815_ID5779_3 --> 2 - 0 Original Alignment gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTC-CTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatactctgcatctcctactttacctcttgttcccaccccccaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCCTACATA-TGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtatctgttgtgtgtctgcttgggtccccatgctcctaaattgtgggaac Alignment from CESAR gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatactctgcatctcctactttacctcttgttcccaccccccaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCCTACATATGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtatctgttgtgtgtctgcttgggtccccatgctcctaaattgtgggaac Alignment from Spaln_aa2Genome CACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT CATGATACTCTGCATCTCCTACTTTACCTCTTGTTCC---CACCCCCCAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCCTACATATGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtatctgttgtgtgtctgcttgggtccccatgctcctaaattgtgggaac Alignment from Spaln_nt2Genome CACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT ATCATGATACTCTGCATCTCCTACT-TTACCTCTTGTTCCCACCCCCCAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCCTACATATGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtatctgttgtgtgtctgcttgggtccccatgctcctaaattgtgggaac Alignment from Pairagon GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATT-CCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatactctgcatctcctactttacctcttgttcccaccccccagGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCCTACATA-TGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtatctgttgtgtgtctgcttgggtccccatgctcctaaattgtgggaac Alignment from Exonerate_protein2genome CCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatactctgcatctcctactttacctcttgttcccacCCCCCAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCCTACATATGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtatctgttgtgtgtctgcttgggtccccatgctcctaaattgtgggaac Alignment from Exonerate_coding2genome CCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatactctgcatctcctactttacctcttgttcccacCCCCCAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCCTACATATGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtatctgttgtgtgtctgcttgggtccccatgctcctaaattgtgggaac Alignment from GeneWise TTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT actctgcATCTCCTACTTTACCTCTTGTTCCCAC---------CCCCCAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCCTACATATGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtatctgttgtgtgtctgcttgggtccccatgctcctaaattgtgggaac #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTG-TTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagagAACCATAATGCTGTACTTCTCTGCTG-TGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagagAACCATAATGCTGTACTTCTCTGCTGTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTACTTCTCTGCTGTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTACTTCTCTGCTGTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Pairagon AGAACCATAATGCTG-----------TGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTACTTCTCTGCTGT-----------GGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTACTTCTCTGCTGTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTACTTCTCTGCTGTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTACTTCTCTGCTGTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAA-GGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAACGGTT-CCTCGTGTTTGGTCTCATTCTC---TTTTGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAACGGTTCCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAACGGTTCCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAACGGTTCCTCGTGTTTGGTCTCATTCTCT---TTTGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAACGGTTCCTCGTGTTTGGTCTCATTCTCT---TTTGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAACGGTTCCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAACGGTTCCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAACGGTTCCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca #### Hells_ID7707_14 --> 1 - 0 Original Alignment gACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGT-AATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tgtctttagaacgatctttaaactagggactcaggctcctggtttcttagaACAGTTGTGGAAGGTAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTCAATCACCCTT-CATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from CESAR gACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tggctttagaacgatctttaaactagggactcaggctcctggtttcttagaACAGTTGTGGAAGGTAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTCAATCACCCTTCATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Spaln_aa2Genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tgtctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTCAATCACCCTTCATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Spaln_nt2Genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGT-AATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tgtctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTCAATCACCC-TTCATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Pairagon GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGT-AATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tgtctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTCAATCACCC-TTCATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Exonerate_protein2genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tgtctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTCAATCACCCTTCATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Exonerate_coding2genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tgtctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTCAATCACCCTTCATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from GeneWise GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tgtctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTCAATCACCCTTCATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGG-TTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGCTTCCCCAATT-TCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATtggtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGCTTCCCCAATTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATtggtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGCTTCCCCAATTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGCTTCCCCAATTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGCTTCCCCAATTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGCTTCCCCAATTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGCTTCCCCAATTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGCTTCCCCAATTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCA-AAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt aagttataaattataacatgtttggcagaacttgtctggcttccttgtagcTCGAGGTCCCCCTCACCTCCAGAGGAAGAAGCTCAAAG-TGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTtgtgagtagtcgcatgttatggcttacctttacaaatagagtattttcctg Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt aagttataaattataacatgtttggcagaacttgtctggcttccttgtagcTCGAGGTCCCCCTCACCTCCAGAGGAAGAAGCTCAAAGTGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTtgtgagtagtcgcatgttatggcttacctttacaaatagagtattttcctg Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcagaacttgtctggcttccttgtagCTCGAGGTCCCCCTCACCTCCAGAGGAAGAAGCTCAAAGTGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtgagtagtcgcatgttatggcttacctttacaaatagagtattttcctg Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcagaacttgtctggcttccttgtagCTCGAGGTCCCCCTCACCTCCAGAGGAAGAAGCTCAAAGTGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtgagtagtcgcatgttatggcttacctttacaaatagagtattttcctg Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcagaacttgtctggcttccttgtagCTCGAGGTCCCCCTCACCTCCAGAGGAAGAAGCTCAAAGTGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtgagtagtcgcatgttatggcttacctttacaaatagagtattttcctg Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcagaacttgtctggcttccttgtagCTCGAGGTCCCCCTCACCTCCAGAGGAAGAAGCTCAAAGTGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtgagtagtcgcatgttatggcttacctttacaaatagagtattttcctg Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcagaacttgtctggcttccttgtagCTCGAGGTCCCCCTCACCTCCAGAGGAAGAAGCTCAAAGTGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtgagtagtcgcatgttatggcttacctttacaaatagagtattttcctg Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcagaacttgtctggcttccttgtagCTCGAGGTCCCCCTCACCTCCAGAGGAAGAAGCTCAAAGTGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtgagtagtcgcatgttatggcttacctttacaaatagagtattttcctg #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATAT-GGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagatACATCTGATCTGCACTTTCAAATTAGCAAAGACCGGTATCGGAGGCC-ACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagatACATCTGATCTGCACTTTCAAATTAGCAAAGACCGGTATCGGAGGCCACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTAGCAAAGACCGGTATCGGAGGCCACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTAGCAAAGACCGGTATCGGAGGCCACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATAT-GGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTAGCAAAGACCGGTATCGGAGGCCA-CCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTAGCAAAGACCGGTATCGGAGGCCACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTAGCAAAGACCGGTATCGGAGGCCACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTAGCAAAGACCGGTATCGGAGGCCACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc #### Hnrnpul2_ID2401_5 --> 0 - 1 Original Alignment GTAACTCAGAAT-CTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTg cttacttttagactgtgcaattgtcctatggaacaactatgtatttccagGTTACACAGAATCCTACCAATGC-AGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCACAACTTggtaccttgctctaaatagatagttttggcatcttttctttgtacttttct Alignment from CESAR GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTg cttacttttagactgtgcaattgtcctatggaacaactatgtatttccagGTTACACAGAATCCTACCAATGCAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCACAACTTggtaccttgctctaaatagatagttttggcatcttttctttgtacttttct Alignment from Spaln_aa2Genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG cttacttttagactgtgcaattgtcctatggaacaactatgtatttccagGTTACACAGAATCCTACCAATGCAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCACAACTTGgtaccttgctctaaatagatagttttggcatcttttctttgtacttttct Alignment from Spaln_nt2Genome GTAACTCAGAATC-TCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG cttacttttagactgtgcaattgtcctatggaacaactatgtatttccagGTTACACAGAATCCTACCAATG-CAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCACAACTTGgtaccttgctctaaatagatagttttggcatcttttctttgtacttttct Alignment from Pairagon GTAACTCAGAAT-CTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG cttacttttagactgtgcaattgtcctatggaacaactatgtatttccagGTTACACAGAATCCTACCAATG-CAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCACAACTTGgtaccttgctctaaatagatagttttggcatcttttctttgtacttttct Alignment from Exonerate_protein2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG cttacttttagactgtgcaattgtcctatggaacaactatgtatttccagGTTACACAGAATCCTACCAATGCAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCACAACTTGgtaccttgctctaaatagatagttttggcatcttttctttgtacttttct Alignment from Exonerate_coding2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG cttacttttagactgtgcaattgtcctatggaacaactatgtatttccagGTTACACAGAATCCTACCAATGCAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCACAACTTGgtaccttgctctaaatagatagttttggcatcttttctttgtacttttct Alignment from GeneWise ---ACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG cttacttttagactgtgcaattgtcctatggaacaactatgtatttccagGTTACACAGAATCCTACCAATGCAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCACAACTTGgtaccttgctctaaatagatagttttggcatcttttctttgtacttttct #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACT-GTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTCGTCC-CACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from CESAR GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTCGTCCCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTCGTCCCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Spaln_nt2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTCGTCCCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Pairagon GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTCGTCCCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTCGTCCCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTCGTCCCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTCGTCCCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagtgGGTGGGCAGCACCGAGGCCTATG-CAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagtgGGTGGGCAGCACCGAGGCCTATGCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTAT-CGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCCATGGCC-TATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCCATGGCCTATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCCATGGCCTATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCCATGGCCTATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCCATGGCCTATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCCATGGCCTATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCCATGGCCTATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCCATGGCCTATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta #### Hoga1_ID8381_4 --> 0 - 0 Original Alignment GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCC-GTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ataaacaagggttaagactgcaaatggcttatgtgtctgcttcttttcagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTCGTGGTCACAT-GTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtatgtctttgcagcatccaatttgcccaaacacccaccaccccaggtcg Alignment from CESAR GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ataaacaagggttaagactgcaaatggcttatgtgtctgcttcttttcagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtatgtctttgcagcatccaatttgcccaaacacccaccaccccaggtcg Alignment from Spaln_aa2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ataaacaagggttaagactgcaaatggcttatgtgtctgcttcttttcagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtatgtctttgcagcatccaatttgcccaaacacccaccaccccaggtcg Alignment from Spaln_nt2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ataaacaagggttaagactgcaaatggcttatgtgtctgcttcttttcagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtatgtctttgcagcatccaatttgcccaaacacccaccaccccaggtcg Alignment from Pairagon GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGC-CGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ataaacaagggttaagactgcaaatggcttatgtgtctgcttcttttcagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTCGTGGTCACA-TGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtatgtctttgcagcatccaatttgcccaaacacccaccaccccaggtcg Alignment from Exonerate_protein2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ataaacaagggttaagactgcaaatggcttatgtgtctgcttcttttcagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtatgtctttgcagcatccaatttgcccaaacacccaccaccccaggtcg Alignment from Exonerate_coding2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ataaacaagggttaagactgcaaatggcttatgtgtctgcttcttttcagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtatgtctttgcagcatccaatttgcccaaacacccaccaccccaggtcg Alignment from GeneWise GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ataaacaagggttaagactgcaaatggcttatgtgtctgcttcttttcagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtatgtctttgcagcatccaatttgcccaaacacccaccaccccaggtcg #### Hoga1_ID8382_5 --> 0 - 1 Original Alignment GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCT-GGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCACGGGTCCG-TGGCTCCCTTCTAGCTAGCTATTCTGTGggtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from CESAR GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCACGGGTCCGTGGCTCCCTTCTAGCTAGCTATTCTGTGggtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Spaln_aa2Genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCACGGGTCCGTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Spaln_nt2Genome GTGACCAGGATTGGACTGATAGT---TCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCT-GGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCACGGGTCCG-TGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Pairagon GTGACCAGGATTGGACTGATAGT---TCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGC-TGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCACGGGTCCG-TGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Exonerate_protein2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCACGGGTCCGTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Exonerate_coding2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCACGGGTCCGTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from GeneWise GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCACGGGTCCGTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTG-CAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcaggTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACCAGGAC---CCCCAAAAACTTATGaagtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTG-CAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcaggTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACCAGGAC---CCCCAAAAACTTATGaagtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTG-CAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATAcCAGGAC---CCCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGC-AGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACCAGGACC---CCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTG-CAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACCAGGACC---CCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTG-CAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACCAGGAC---CCCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTG-CAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACCAGGAC---CCCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTG---------------------------------------------------CAGGACCGAGCCCAGAAACTCAT ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACCAGGACCCCCAAAAACTTATGAAGTAAGAGGACCAAGCCCAAAAACTTATCAAGCTAGGGCGTTATGTCTGAG #### Hps1_ID8620_8 --> 0 - 1 Original Alignment GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACT-CCTGCTCCTTCCCCAGGCGATCAGAGTTCAg gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGAT---AATTCC---CCTGAAGAGTATTTCACTCCCTTCTC-TTCCCCAAGT------GGTCCAggtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from CESAR GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGATAAT---TCC---CCTGAAGAGTATTTCACTCCCTTCTCTTCCCCAAGT------GGTCCAggtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Spaln_aa2Genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTAGCCT gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGATAATTCC------CCTGAAGAGTATTTCACTCCCTTCTCTTCCCCAAGTGGTCCAGGTGAGTGTAGCAGgtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Spaln_nt2Genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGATA--AT-TC---CCCTGAAGAGTATTTCACTCCCTTCTCTTCCCCAAGTG------GTCCAGgtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Pairagon GACACAGA-----CAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGATAATTC-----------CCCTGAAGAGTATTTCACTCCCTTCTCTTCCCCAAGTG------GTCCAGgtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Exonerate_protein2genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTAGCCT gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGAT------AATTCCCCTGAAGAGTATTTCACTCCCTTCTCTTCCCCAAGTGGTCCAGGTGAGTGTAGCAGgtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Exonerate_coding2genome GTAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAGATGGCTGAGGACACCCCCGAGGGGCTGGCGTCTCACTCCCCAGAACTTCCCAGCCCCA GAAGATGTTATAAGGTGGTCTGGAATGTCCCTTTGTGTTCCATACTGCAGGATACTGATAATTCCCCTGAAGAGTATTTCACTCCCTTCTCTTCCCCAAGTGGTCCAGgtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from GeneWise gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcaggatactgataattcccctgaagagtatttcactcccttctcttccccaagtggtccaggtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga #### Il33_ID6361_4 --> 2 - 1 Original Alignment gaACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGT-ACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAg taagacacataataggactttgggtatggagtcttctcctcttctcccaggaACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTCACATACA-TGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATggtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from CESAR gaACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAg taagacacataataggactttgggtatggagtcttctcctcttctcccaggaACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTCACATACATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATggtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Spaln_aa2Genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTCACATACATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Spaln_nt2Genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTCACATACATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Pairagon GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGT-ACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTCACATAC-ATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Exonerate_protein2genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTCACATACATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Exonerate_coding2genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTCACATACATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from GeneWise GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTCACATACATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTATGAGTCT-CCCTGTCCTGCAAGTCAATCAg aatcccatagtctcatctttatgagttcagactgtgtctcacttcctcagacCAAGTGCTGCTATGTTATTATGAGTCACCCCTGTC-TGCAAGTCAATCTggtagttcagtcacaagggtagaatggtactcagagtgtctatggagtctc Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg aatcccatagtctcatctttatgagttcagactgtgtctcacttcctcagacCAAGTGCTGCTATGTTATTATGAGTCACCCCTGTCTGCAAGTCAATCTggtagttcagtcacaagggtagaatggtactcagagtgtctatggagtctc Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgagttcagactgtgtctcacttcctcagACCAAGTGCTGCTATGTTATTATGAGTCACCCCTGTCTGCAAGTCAATCTGgtagttcagtcacaagggtagaatggtactcagagtgtctatggagtctc Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgagttcagactgtgtctcacttcctcagACCAAGTGCTGCTATGTTATTATGAGTCACCCCTGTCTGCAAGTCAATCTGgtagttcagtcacaagggtagaatggtactcagagtgtctatggagtctc Alignment from Pairagon ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgagttcagactgtgtctcacttcctcagACCAAGTGCTGCTATGTTATTATGAGTCACCCCTGTCTGCAAGTCAATCTGgtagttcagtcacaagggtagaatggtactcagagtgtctatggagtctc Alignment from Exonerate_protein2genome aatcccatagtctcatctttatgagttcagactgtgtctcacttcctcagaccaagtgctgctatgttattatgagtcacccctgtctgcaagtcaatctggtagttcagtcacaagggtagaatggtactcagagtgtctatggagtctc Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgagttcagactgtgtctcacttcctcagACCAAGTGCTGCTATGTTATTATGAGTCACCCCTGTCTGCAAGTCAATCTGgtagttcagtcacaagggtagaatggtactcagagtgtctatggagtctc Alignment from GeneWise ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAGGC- aatcccatagtctcatctttatgagttcagactgtgtctcacttcctcagACCAAGTGCTGCTATGTTATTATGAGTCACCCCTGTCTGCAAGTCAATCTGGTAgttcagtcacaagggtagaatggtactcagagtgtctatggagtctc #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAG-GCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACAGGAAGAACAGCGCACGGA-AGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACAGGAAGAACAGCGCACGGAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACAGGAAGAACAGCGCACGGAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACAGGAAGAACAGCGCACGGAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACAGGAAGAACAGCGCACGGAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACAGGAAGAACAGCGCACGGAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACAGGAAGAACAGCGCACGGAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACAGGAAGAACAGCGCACGGAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTG-GAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcaggGAGATGCAAGAGAGAGAGAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGG-AAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcaggGAGATGCAAGAGAGAGAGAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca #### Incenp_ID2608_11 --> 1 - 0 Original Alignment gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAG-ACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from CESAR gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Spaln_aa2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Spaln_nt2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Pairagon GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAG-ACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Exonerate_protein2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Exonerate_coding2genome CGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAGGCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCT GCCCCTCAGAAG---TTACAGAGGCTCTATTGCTTTCCTTTGCATTGCAGGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAGTAAGGCTACCCTATAACACATTAACACAGGGCAGTGCCTTCCTTTGGCT Alignment from GeneWise GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTG-CAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcaggAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTCAAGCCATGTC-GAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from CESAR gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcaggAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTCAAGCCATGTCGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Spaln_aa2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTCAAGCCATGTCGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Spaln_nt2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCA-GCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTCAAGCCATGTC-GAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Pairagon GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCA---------GAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGA---------CCGTCAAGCCATGTCGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Exonerate_protein2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTCAAGCCATGTCGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Exonerate_coding2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTCAAGCCATGTCGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from GeneWise GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTCAAGCCATGTCGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAA-CTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactaggtAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACCTCCTGC-ATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactaggtAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACCTCCTGCATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACCTCCTGCATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACCTCCTGCATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACCTCCTGCATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACCTCCTGCATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACCTCCTGCATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACCTCCTGCATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATG-GGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccaggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGCGGGCTGA-GTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccaggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGCGGGCTGAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGCGGGCTGAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGCGGGCTGAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGCGGGCTGAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGCGGGCTGAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGCGGGCTGAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGCGGGCTGAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCC-TACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATTTTAACTCTACCCCCCCTACC-GCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCagtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from CESAR GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATTTTAACTCTACCCCCCCTACCGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCagtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATTTTAACTCTACCCCCCCTACCGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATTTTAACTCTACCCCCCCTACCGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Pairagon GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATTTTAACTCTACCCCCCCTACCGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATTTTAACTCTACCCCCCCTACCGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATTTTAACTCTACCCCCCCTACCGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATTTTAACTCTACCCCCCCTACCGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAA-TTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gctcaccccagtactcacctgctaacactgcaacctgttttctttcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACAAATGACAGGTAGTCTAGTATCTGACCAGGGCCATGATGACATTGTCACCCAAATGAAGAATATTGAGTGCATTGAACTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCGTAT---CAAGTGCTCACTACCCTACCTATCCTCTACCTGTGTGAACTTTTGCC-GAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtagggggtgacttaggcgttggtgtggttcagcactgttactggtggac Alignment from CESAR GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gctcaccccagtactcacctgctaacactgcaacctgttttctttcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACAAATGACAGGTAGTCTAGTATCTGACCAGGGCCATGATGACATTGTCACCCAAATGAAGAATATTGAGTGCATTGAACTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCGTAT---CAAGTGCTCACTACCCTACCTATCCTCTACCTGTGTGAACTTTTGCCGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtagggggtgacttaggcgttggtgtggttcagcactgttactggtggac Alignment from Spaln_aa2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gctcaccccagtactcacctgctaacactgcaacctgttttctttcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACAAATGACAGGTAGTCTAGTATCTGACCAGGGCCATGATGACATTGTCACCCAAATGAAGAATATTGAGTGCATTGAACTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCGTAT---CAAGTGCTCACTACCCTACCTATCCTCTACCTGTGTGAACTTTTGCCGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtagggggtgacttaggcgttggtgtggttcagcactgttactggtggac Alignment from Spaln_nt2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gctcaccccagtactcacctgctaacactgcaacctgttttctttcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACAAATGACAGGTAGTCTAGTATCTGACCAGGGCCATGATGACATTGTCACCCAAATGAAGAATATTGAGTGCATTGAACTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCGTA---TCAAGTGCTCACTACCCTACCTATCCTCTACCTGTGTGAACTTTTGCCGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtagggggtgacttaggcgttggtgtggttcagcactgttactggtggac Alignment from Pairagon GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gctcaccccagtactcacctgctaacactgcaacctgttttctttcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACAAATGACAGGTAGTCTAGTATCTGACCAGGGCCATGATGACATTGTCACCCAAATGAAGAATATTGAGTGCATTGAACTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCGTAT---CAAGTGCTCACTACCCTACCTATCCTCTACCTGTGTGAACTTTTGCCGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtagggggtgacttaggcgttggtgtggttcagcactgttactggtggac Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gctcaccccagtactcacctgctaacactgcaacctgttttctttcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACAAATGACAGGTAGTCTAGTATCTGACCAGGGCCATGATGACATTGTCACCCAAATGAAGAATATTGAGTGCATTGAACTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCGTAT---CAAGTGCTCACTACCCTACCTATCCTCTACCTGTGTGAACTTTTGCCGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtagggggtgacttaggcgttggtgtggttcagcactgttactggtggac Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gctcaccccagtactcacctgctaacactgcaacctgttttctttcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACAAATGACAGGTAGTCTAGTATCTGACCAGGGCCATGATGACATTGTCACCCAAATGAAGAATATTGAGTGCATTGAACTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCGTAT---CAAGTGCTCACTACCCTACCTATCCTCTACCTGTGTGAACTTTTGCCGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtagggggtgacttaggcgttggtgtggttcagcactgttactggtggac Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG-------------------------------------------------- gctcaccccagtactcacctgctaacactgcaacctgttttctttcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACAAATGACAGGTAGTCTAGTATCTGACCAGGGCCATGATGACATTGTCACCCAAATGAAGAATATTGAGTGCATTGAACTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCGTAT---CAAGTGCTCACTACCCTACCTATCCTCTACCTGTGTGAACTTTTGCCGAAGTATGGCCATAGTCTCAAGTGCCTTAAGCGCCACCTTGTAGGGGGTGACTTAGGCGTTGGTGTGGTTCAGCACTGTTACTGGTGGAC #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTG-GAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTCGAGGTAGTTT-GCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTCGAGGTAGTTTGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTCGAGGTAGTTTGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Spaln_nt2Genome AAACGGAAGGTG-GAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTCGAGGTAGTTT-GCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Pairagon AAACGGAAG--------------------------GTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTCGAGGTAGTTTGCCAACCAGTTTG--------------------------GTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTCGAGGTAGTTTGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTCGAGGTAGTTTGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTCGAGGTAGTTTGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAG-CTTTTCTATGTCCATTACATTGACt ctccaggctggccccgatggctaaactctaacatttccactcctttttagcaTTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCCTTTTCT-TGTTTACTACATTGACtgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from CESAR ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccaggctggccccgatggctaaactctaacatttccactcctttttagcaTTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCCTTTTCTTGTTTACTACATTGACtgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCCTTTTCTTGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCCTTTTCTTGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Pairagon CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCCTTTTCTTGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCCTTTTCTTGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCCTTTTCTTGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCCTTTTCTTGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAAC-TGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATCTGGGCTT-CAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATCTGGGCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATCTGGGCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATCTGGGCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATCTGGGCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATCTGGGCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATCTGGGCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATCTGGGCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg #### Kcnip2_ID9608_4 --> 2 - 0 Original Alignment acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAG-GGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtaatgaagtattgcagtcctattctgtcctcagatAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAACAGTTTGGAAC-GCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtccgtggggaatggaactagctgtgcagtagccgaccctccaagctccc Alignment from CESAR acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtaatgaagtattgcagtcctattctgtcctcagatAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAACAGTTTGGAACGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtccgtggggaatggaactagctgtgcagtagccgaccctccaagctccc Alignment from Spaln_aa2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtaatgaagtattgcagtcctattctgtcctcagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAACAGTTTGGAACGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtccgtggggaatggaactagctgtgcagtagccgaccctccaagctccc Alignment from Spaln_nt2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGG-GTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTG---CAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtaatgaagtattgcagtcctattctgtcctcagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAACAGTTTGGAAC-GCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtccgtggggaatggaactagctgtgcagtagccgaccctccaagctccc Alignment from Pairagon ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAG-GGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGA---GTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtaatgaagtattgcagtcctattctgtcctcagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAACAGTTTGGAAC-GCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtccgtggggaatggaactagctgtgcagtagccgaccctccaagctccc Alignment from Exonerate_protein2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtaatgaagtattgcagtcctattctgtcctcagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAACAGTTTGGAACGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtccgtggggaatggaactagctgtgcagtagccgaccctccaagctccc Alignment from Exonerate_coding2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtaatgaagtattgcagtcctattctgtcctcagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAACAGTTTGGAACGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtccgtggggaatggaactagctgtgcagtagccgaccctccaagctccc Alignment from GeneWise ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTG---CAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtaatgaagtattgcagtcctattctgtcctcagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAACAGTTTGGAACGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtccgtggggaatggaactagctgtgcagtagccgaccctccaagctccc #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGAC-CCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagacTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCCTTA-CTTTAAGAATGCTGATGGACTTGGAATCaggtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from CESAR atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagacTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCCTTACTTTAAGAATGCTGATGGACTTGGAATCaggtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCCTTACTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCCTTACTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Pairagon ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCCTTACTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCCTTACTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCCTTACTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACACCCCCCTTACTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAG-TCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacactctctcattagtggatgtatctgtccctttcag------GTGCAAATTTTGGATTCACACCTCTG-TTTGCTGGAAGACCCTCAGAGTATGCTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaaggataagtatggtggattgaccacattgaagcctctattaagagaa Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacactctctcattagtggatgtatctgtccctttcag------GTGCAAATTTTGGATTCACACCTCTGTTTGCTGGAAGACCCTCAGAGTATGCTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaaggataagtatggtggattgaccacattgaagcctctattaagagaa Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacactctctcattagtggatgtatctgtccctttcag------GTGCAAATTTTGGATTCACACCTCTGTTTGCTGGAAGACCCTCAGAGTATGCTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaaggataagtatggtggattgaccacattgaagcctctattaagagaa Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacactctctcattagtggatgtatctgtccctttcag------GTGCAAATTTTGGATTCACACCTCTGTTTGCTGGAAGACCCTCAGAGTATGCTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGT---ACAGGAATTTAGTTTTTCTAAAgtaaggataagtatggtggattgaccacattgaagcctctattaagagaa Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACA-GTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacactctctcattagtggatgtatctgtccctttcag------GTGCAAATTTTGGATTCACACCTCTGTT-TGCTGGAAGACCCTCAGAGTATGCTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGT---ACAGGAATTTAGTTTTTCTAAAgtaaggataagtatggtggattgaccacattgaagcctctattaagagaa Alignment from Exonerate_protein2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacactctctcattagtggatgtatctgtccctttcagGTGCAAATTTTGGATTCACACCTCTGTTTGCTGGAAGACCCTCAGAGTATGCTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaaggataagtatggtggattgaccacattgaagcctctattaagagaa Alignment from Exonerate_coding2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacactctctcattagtggatgtatctgtccctttcagGTGCAAATTTTGGATTCACACCTCTGTTTGCTGGAAGACCCTCAGAGTATGCTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaaggataagtatggtggattgaccacattgaagcctctattaagagaa Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacactctctcattagtggatgtatctgtccctttcagGTGCAAATTTTGGATTCACACCTCTGTTTGCTGGAAGACCCTCAGAGTATGCTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaaggataagtatggtggattgaccacattgaagcctctattaagagaa #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagggCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAACAGG---------TCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGG-CATAAAGGGATATTCTTTTATAAAAggtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagggCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGCATAAAGGGATATTCTTTTATAAAAggtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGCATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGCATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGCATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGCATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Exonerate_coding2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTGGACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttgggGATTGCAGTTAAAGTAAACTGTTCATTTGTGTTACAGGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGCATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGCATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATC-AACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagaTTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCCAACACACCCC-GTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAaagtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagaTTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCCAACACACCCCGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAaagtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCCAACACACCCCGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATC-AACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCCAACAC-ACCCCGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTA---------TTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCCA---------ACACACCCCGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCCAACACACCCCGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCCAACACACCCCGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAAG- ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCCAACACACCCCGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAGTgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGA-CACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCCATTGCCGCG-TAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattttc Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCCATTGCCGCGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaagtctc Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCCATTGCCGCGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattttc Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACG-AGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCCATTGCCG-CGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattttc Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGC---------------AGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGAC---------------ACAGCCCATTGCCGCGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattttc Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCCATTGCCGCGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCCATTGCCGCGTAGTAGAGATGTGATTGGGCCTCCT---GAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattttc #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAG-GGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagtCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAACGGCAAAC-GGATGCTACACACACACTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagtCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAACGGCAAACGGATGCTACACACACACTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAACGGCAAACGGATGCTACACACACACTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAG-GGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAACGGCAAAC-GGATGCTACACACACACTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGC-----------------GCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAACGGCAAACGGATGCTA-----------------CACACACACTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAACGGCAAACGGATGCTACACACACACTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Exonerate_coding2genome ACAAAGCCTGTAAAGTTGACAGTCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggaggggaagcctggaattttcaattagTGAAAGAATTT---CTCAATAGTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAACGGCAAACGGATGCTACACACACACTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAACGGCAAACGGATGCTACACACACACTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGA-GCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATACTATTACCCACGGCGGCTTGA-GATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATACTATTACCCACGGCGGCTTGAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATACTATTACCCACGGCGGCTTGAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATACTATTACCCACGGCGGCTTGAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATACTATTACCCACGGCGGCTTGAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATACTATTACCCACGGCGGCTTGAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGGAATACTATTACCCACGGCGGCTTGAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGA-GCACTGGAGATCCGGGAGAAG agtccttcagggcccttgaaggaagatactgacttgtctatggttggcagGTA------GCCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCACACTGCAGAAGACTCAC-TGAAATCCGAGAGAAGgtaagtccaggcacaacagcgtcacatgaatgccaagcagcactaggatc Alignment from CESAR GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagggcccttgaaggaagatactgacttgtctatggttggcagGTAGCC------CTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCACACTGCAGAAGACTCACTGAAATCCGAGAGAAGgtaagtccaggcacaacagcgtcacatgaatgccaagcagcactaggatc Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagggcccttgaaggaagatactgacttgtctatggttggcagGTAGCC------CTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCACACTGCAGAAGACTCACTGAAATCCGAGAGAAGgtaagtccaggcacaacagcgtcacatgaatgccaagcagcactaggatc Alignment from Spaln_nt2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAG-CACTGGAGATCCGGGAGAAG agtccttcagggcccttgaaggaagatactgacttgtctatggttggcagGTAG------CCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCACACTGCAGAAGACTCACT-GAAATCCGAGAGAAGgtaagtccaggcacaacagcgtcacatgaatgccaagcagcactaggatc Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTG-------------GAGATCCGGGAGAAG agtccttcagggcccttgaaggaagatactgacttgtctatggttggcagGTAG------CCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCA-------------CACTGCAGAAGACTCACTGAAATCCGAGAGAAGgtaagtccaggcacaacagcgtcacatgaatgccaagcagcactaggatc Alignment from Exonerate_protein2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagggcccttgaaggaagatactgacttgtctatggttggcagGTAGCC------CTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCACACTGCAGAAGACTCACTGAAATCCGAGAGAAGgtaagtccaggcacaacagcgtcacatgaatgccaagcagcactaggatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise --CTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG-------------------------------------------------- agtccttcagggcccttgaaggaagatactgacttgtctatggttggcaggtagCCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCACACTGCAGAAGACTCACTGAAATCCGAGAGAAGGTAAGTCCAGGCACAACAGCGTCACATGAATGCCAAGCAGCACTAGGATC #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTC-CAGAAGTGGCAGCGAATGGTAGCGCCTCCCg gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCCAGA-GTGGCAGCGAATGGTAGCACCTCCTggtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCCAGAGTGGCAGCGAATGGTAGCACCTCCTggtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCCAGAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCCAGAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCCAGAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCCAGAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCCAGAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCCAGAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGG-CAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCCAGCACA-AGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCCAGCACAAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCCAGCACAAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAA-CACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCCAGCACA-AGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCCAGCACAAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCCAGCACAAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCCAGCACAAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCCAGCACAAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACT-TTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCCTTTTGTT-GAAGGATGGGCCAAACAGGTACagtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCCTTTTGTTGAAGGATGGGCCAAACAGGTACagtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCCTTTTGTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCCTTTTGTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Pairagon GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCCTTTTGTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCCTTTTGTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCCTTTTGTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from GeneWise --------------------------------------------------GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA AGGATGAGAGGTTGACAGGGGTGTGCCTCTCACCTTTCTCCACCCTGCAGGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCCTTTTGTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCA-AAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccaggtTTCATAGCTTTTTCACAAATGCCTGAGTTAGCCCAAGAAGA-CAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccaggtTTCATAGCTTTTTCACAAATGCCTGAGTTAGCCCAAGAAGACAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCCCAAGAAGACAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCCCAAGAAGACAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGG-CAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCCCAAGAAGA-CAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCCCAAGAAGACAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCCCAAGAAGACAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCCCAAGAAGACAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt #### Lipf_ID6846_2 --> 0 - 1 Original Alignment AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTAT-GGGAAGAAAAATTCTGAGAATATCg gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATCAGCAAGAGAA-CTCTGAAAACATAggtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from CESAR AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATCAGCAAGAGAACTCTGAAAACATAggtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from Spaln_aa2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATCAGCAAGAGAACTCTGAAAACATAGgtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from Spaln_nt2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTA--------------------------------------------TGGGAAGAAAAATTCTGA gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATCAGCAAGAGAACTCTGAAAACATAGGTAAGGACATCATGTGCGTGGGAAGAAAAATCCTGAgcaagccaatccac Alignment from Pairagon AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTA--------------------------------------------TGGGAAGAAAAATTCTGA gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATCAGCAAGAGAACTCTGAAAACATAGGTAAGGACATCATGTGCGTGGGAAGAAAAATCCTGAgcaagccaatccac Alignment from Exonerate_protein2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATCAGCAAGAGAACTCTGAAAACATAGgtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from Exonerate_coding2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATCAGCAAGAGAACTCTGAAAACATAGgtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from GeneWise AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATCAGCAAGAGAACTCTGAAAACATAGgtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGT-GACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGCGATTGTC-GACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAggtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGCGATTGTCGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAggtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGCGATTGTCGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGCGATTGTCGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGG--------TGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGCGATTGTCGAC--------CAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGCGATTGTCGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Exonerate_coding2genome gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagacataaatgaatgtgtgatgcctgggatgtgtcgtcatgggcgattgtcgaccaaccccggctcttatcactgtgtctgcccacctggtcatagcttaggtcctttccgcaaacagtgtataggtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGCGATTGTCGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGC-CTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagccGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCCTTGTGA-CACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGggtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagccGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCCTTGTGACACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGggtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCCTTGTGACACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCCTTGTGACACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCG-CCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCCTTGTGA-CACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCCTTGTGACACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCCTTGTGACACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCCTTGTGACACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACC-TCACCCCCCCGGCCTTACCCAg tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCCTCACCTT-TCGGCCTTTCCTGggtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from CESAR CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCCTCACCTTTCGGCCTTTCCTGggtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCCTCACCTTTCGGCCTTTCCTGGgtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCCTCACCTTTCGGCCTTTCCTGGgtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Pairagon CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCCTCACCTTTCGGCCTTTCCTGGgtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCCTCACCTTTCGGCCTTTCCTGGgtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Exonerate_coding2genome tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagccagtgagtgaggagcgatctgtgcaacagagccatcccactaccattaccctcacctttcggcctttcctgggtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from GeneWise ---GTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCCTCACCTTTCGGCCTTTCCTGGgtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCCTGCGGC-CCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatatgactggtcaattccgcccatatcgtgcattgctttttcaacacagatGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCCTGGAAAAG-TATCTGTATGACCACTGGTGGATCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGggttcggatacttgggtagcacacacctgggtccatttctgaccccagccc Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatatgactggtcaattccgcccatatcgtgcattgctttttcaacacagatGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCCTGGAAAAGTATCTGTATGACCACTGGTGGATCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGggttcggatacttgggtagcacacacctgggtccatttctgaccccagccc Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactggtcaattccgcccatatcgtgcattgctttttcaacacagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCCTGGAAAAGTATCTGTATGACCACTGGTGGATCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgttcggatacttgggtagcacacacctgggtccatttctgaccccagccc Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactggtcaattccgcccatatcgtgcattgctttttcaacacagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCCTGGAAAAGTATCTGTATGACCACTGGTGGATCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgttcggatacttgggtagcacacacctgggtccatttctgaccccagccc Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactggtcaattccgcccatatcgtgcattgctttttcaacacagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCCTGGAAAAGTATCTGTATGACCACTGGTGGATCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgttcggatacttgggtagcacacacctgggtccatttctgaccccagccc Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactggtcaattccgcccatatcgtgcattgctttttcaacacagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCCTGGAAAAGTATCTGTATGACCACTGGTGGATCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgttcggatacttgggtagcacacacctgggtccatttctgaccccagccc Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactggtcaattccgcccatatcgtgcattgctttttcaacacagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCCTGGAAAAGTATCTGTATGACCACTGGTGGATCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgttcggatacttgggtagcacacacctgggtccatttctgaccccagccc Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactggtcaattccgcccatatcgtgcattgctttttcaacacagATGTGAATGGGTGTGGGGCTGAGCCCTGTGGCCCCTGGAAAAGTATCTGTATGACCACTGGTGGATCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgttcggatacttgggtagcacacacctgggtccatttctgaccccagccc #### Ltbp3_ID1268_20 --> 2 - 1 Original Alignment agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTA-TTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg gtcatagctcagtaaatattaattggaataagttgccttatcgtttaaagagGTGGAGCAGCCTCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACCTAGCTA-TAATGTTACTCAACAGGAATGCTGTTGCTCTCTGGGAGCAGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtaaatcaacagactgaatcatggccctatgaaactggcctgagaattct Alignment from CESAR agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg gtcatagctcagtaaatattaattggaataagttgccttatcgtttaaagagGTGGAGCAGCCTCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACCTAGCTATAATGTTACTCAACAGGAATGCTGTTGCTCTCTGGGAGCAGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtaaatcaacagactgaatcatggccctatgaaactggcctgagaattct Alignment from Spaln_aa2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gtcatagctcagtaaatattaattggaataagttgccttatcgtttaaagAGGTGGAGCAGCCTCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACCTAGCTATAATGTTACTCAACAGGAATGCTGTTGCTCTCTGGGAGCAGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtaaatcaacagactgaatcatggccctatgaaactggcctgagaattct Alignment from Spaln_nt2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gtcatagctcagtaaatattaattggaataagttgccttatcgtttaaagAGGTGGAGCAGCCTCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACCTAGCTATAATGTTACTCAACAGGAATGCTGTTGCTCTCTGGGAGCAGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtaaatcaacagactgaatcatggccctatgaaactggcctgagaattct Alignment from Pairagon AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACC-------AATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gtcatagctcagtaaatattaattggaataagttgccttatcgtttaaagAGGTGGAGCAGCCTCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCA-------TACCTAGCTATAATGTTACTCAACAGGAATGCTGTTGCTCTCTGGGAGCAGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtaaatcaacagactgaatcatggccctatgaaactggcctgagaattct Alignment from Exonerate_protein2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gtcatagctcagtaaatattaattggaataagttgccttatcgtttaaagAGGTGGAGCAGCCTCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACCTAGCTATAATGTTACTCAACAGGAATGCTGTTGCTCTCTGGGAGCAGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtaaatcaacagactgaatcatggccctatgaaactggcctgagaattct Alignment from Exonerate_coding2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gtcatagctcagtaaatattaattggaataagttgccttatcgtttaaagAGGTGGAGCAGCCTCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACCTAGCTATAATGTTACTCAACAGGAATGCTGTTGCTCTCTGGGAGCAGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtaaatcaacagactgaatcatggccctatgaaactggcctgagaattct Alignment from GeneWise AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gtcatagctcagtaaatattaattggaataagttgccttatcgtttaaagAGGTGGAGCAGCCTCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACCTAGCTATAATGTTACTCAACAGGAATGCTGTTGCTCTCTGGGAGCAGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtaaatcaacagactgaatcatggccctatgaaactggcctgagaattct #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTg agtgacatgggaatataagtgaacccaccctatcatcttttcccccacagcgGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACCCAAGACAATAACATTGTGCAATTATGGCA-TCCTACCCACCGGggtaggcaagccagtttagtttttagggttcctgatgagaatgctgttgta Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTg agtgacatgggaatataagtgaacccaccctatcatcttttcccccacagcgGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACCCAAGACAATAACATTGTGCAATTATGGCA-TCCTACCCACCGGggtaggcaagccagtttagtttttagggttcctgatgagaatgctgttgta Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtgacatgggaatataagtgaacccaccctatcatcttttcccccacagCGGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACCCAAGACAATAACATTGTGCAATTATGGCATCCTACCCACCGGGgtaggcaagccagtttagtttttagggttcctgatgagaatgctgttgta Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtgacatgggaatataagtgaacccaccctatcatcttttcccccacagCGGAATTTCATAG---GTGTCCTGACGGTAAAGGCTATACCCAAGACAATAACATTGTGCAATTATGGCATCCTACCCACCGGGgtaggcaagccagtttagtttttagggttcctgatgagaatgctgttgta Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTG agtgacatgggaatataagtgaacccaccctatcatcttttcccccacagCGGAATTTCATAG---GTGTCCTGACGGTAAAGGCTATACCCAAGACAATAACATTGTGCAATTATGGCA-TCCTACCCACCGGGgtaggcaagccagtttagtttttagggttcctgatgagaatgctgttgta Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtgacatgggaatataagtgaacccaccctatcatcttttcccccacagCGGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACCCAAGACAATAACATTGTGCAATTATGGCATCCTACCCACCGGGgtaggcaagccagtttagtttttagggttcctgatgagaatgctgttgta Alignment from Exonerate_coding2genome agtgacatgggaatataagtgaacccaccctatcatcttttcccccacagcggaatttcataggtgtcctgacggtaaaggctatacccaagacaataacattgtgcaattatggcatcctacccaccggggtaggcaagccagtttagtttttagggttcctgatgagaatgctgttgta Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtgacatgggaatataagtgaacccaccctatcatcttttcccccacagCGGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACCCAAGACAATAACATTGTGCAATTATGGCATCCTACCCACCGGGgtaggcaagccagtttagtttttagggttcctgatgagaatgctgttgta #### Ltbp3_ID1271_23 --> 2 - 1 Original Alignment acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCC-TGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg tatcatgccacccaaggaacagctgaatacttctctttttttttttctagatTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTCTTTGAAAACACACATGGTGGCTACCGTTGTGCACTGTACAC-ACCAGCTGAATATAGTTCAGCACAACACCAATGTTCGAGTCCTGAGGAGATGggtgaggacttagaaaacaagtttggcaatgccaaggggtggattctgctg Alignment from CESAR acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg tatcatgccacccaaggaacagctgaatacttctctttttttttttctagatTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTCTTTGAAAACACACATGGTGGCTACCGTTGTGCACTGTACACACCAGCTGAATATAGTTCAGCACAACACCAATGTTCGAGTCCTGAGGAGATGggtgaggacttagaaaacaagtttggcaatgccaaggggtggattctgctg Alignment from Spaln_aa2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatcatgccacccaaggaacagctgaatacttctctttttttttttctagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTCTTTGAAAACACACATGGTGGCTACCGTTGTGCACTGTACACACCAGCTGAATATAGTTCAGCACAACACCAATGTTCGAGTCCTGAGGAGATGGgtgaggacttagaaaacaagtttggcaatgccaaggggtggattctgctg Alignment from Spaln_nt2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGC-CTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatcatgccacccaaggaacagctgaatacttctctttttttttttctagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTCTTTGAAAACACACATGGTGGCTACCGTTGTGCACTGTAC-ACACCAGCTGAATATAGTTCAGCACAACACCAATGTTCGAGTCCTGAGGAGATGGgtgaggacttagaaaacaagtttggcaatgccaaggggtggattctgctg Alignment from Pairagon ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGC-CTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatcatgccacccaaggaacagctgaatacttctctttttttttttctagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTCTTTGAAAACACACATGGTGGCTACCGTTGTGCACTGTACA-CACCAGCTGAATATAGTTCAGCACAACACCAATGTTCGAGTCCTGAGGAGATGGgtgaggacttagaaaacaagtttggcaatgccaaggggtggattctgctg Alignment from Exonerate_protein2genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatcatgccacccaaggaacagctgaatacttctctttttttttttctagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTCTTTGAAAACACACATGGTGGCTACCGTTGTGCACTGTACACACCAGCTGAATATAGTTCAGCACAACACCAATGTTCGAGTCCTGAGGAGATGGgtgaggacttagaaaacaagtttggcaatgccaaggggtggattctgctg Alignment from Exonerate_coding2genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatcatgccacccaaggaacagctgaatacttctctttttttttttctagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTCTTTGAAAACACACATGGTGGCTACCGTTGTGCACTGTACACACCAGCTGAATATAGTTCAGCACAACACCAATGTTCGAGTCCTGAGGAGATGGgtgaggacttagaaaacaagtttggcaatgccaaggggtggattctgctg Alignment from GeneWise ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatcatgccacccaaggaacagctgaatacttctctttttttttttctagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTCTTTGAAAACACACATGGTGGCTACCGTTGTGCACTGTACACACCAGCTGAATATAGTTCAGCACAACACCAATGTTCGAGTCCTGAGGAGATGGgtgaggacttagaaaacaagtttggcaatgccaaggggtggattctgctg #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGA-GAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGACGAAG-TGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTggtgagcatttttgaaggttaccaattcttttacttttagggTCCCAGTGC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGACGAAGTGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTggtgagcatttttgaaggcggtttctctcttaacttacagggTCCCAGTGC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGACGAAGTGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggttaccaattcttttacttttagGGTCCCAGTGC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGACGAAGTGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggttaccaattcttttacttttagGGTCCCAGTGC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGACGAAGTGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggttaccaattcttttacttttagGGTCCCAGTGC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGACGAAGTGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggttaccaattcttttacttttagGGTCCCAGTGC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCGGG ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGACGAAGTGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGGTgagcatttttgaaggttaccaattcttttacttttagggtcccagtgc Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGACGAAGTGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggttaccaattcttttacttttagGGTCCCAGTGC #### Ltbp3_ID1273_25 --> 2 - 1 Original Alignment ACGTGGCACCg ggTCCCAGTGCCCGACTTCA-CAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg ACGTGGTACTggtaagcatttttgaaggcggtttctctcttaacttacagggTCCCAGTGCTCTACTTTACCAGA-TGAGATGCTCAACTCATTTTGGGATACCACCCCGCTGCTACTTGGG---------CGAggtaagtaaggctaagctgatgattgtatgcaaagtctactatgggaagct Alignment from CESAR ACGTGGCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg ACGTGGTACTggtgagcatttttgaaggcggtttctctcttaacttacagggTCCCAGTGCTCTACTTTACCAGATGAGATGCTCAACTCATTTTGGGATACCACCCCGCTGCTACTTGGG---------CGAggtaagtaaggctaagctgatgattgtatgcaaagtctactatgggaaaat Alignment from Spaln_aa2Genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtaagcatttttgaaggcggtttctctcttaacttacagGGTCCCAGTGCTCTACTTTACCAGATGAGATGCTCAACTCATTTTGGGATACCACCCCGCTGCTACTTGGG---------CGAGgtaagtaaggctaagctgatgattgtatgcaaagtctactatgggaagct Alignment from Spaln_nt2Genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAG---CAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtaagcatttttgaaggcggtttctctcttaacttacagGGTCCCAGTGCTCTACTTTACCAGATGAGATGCTCAACTCATTTTGGGATACCACCCCGCTGCTACTTGG---------GCGAGgtaagtaaggctaagctgatgattgtatgcaaagtctactatgggaagct Alignment from Pairagon ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGA---GCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtaagcatttttgaaggcggtttctctcttaacttacagGGTCCCAGTGCTCTACTTTACCAGATGAGATGCTCAACTCATTTTGGGATACCACCCCGCTGCTACTTGG---------GCGAGgtaagtaaggctaagctgatgattgtatgcaaagtctactatgggaagct Alignment from Exonerate_protein2genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGT ACGTGGTACTGgtaagcatttttgaaggcggtttctctcttaacttacagGGTCCCAGTGCTCTACTTTACCAGATGAGATGCTCAACTCATTTTGGGATACCACCCCGCTGCTACTTGGGCGAGgtaagtaaggctaagctgatgattgtatgcaaagtctactatgggaagct Alignment from Exonerate_coding2genome ACGTGGCACCGGG ACGTGGTACTGGTaagcatttttgaaggcggtttctctcttaacttacagggtcccagtgctctactttaccagatgagatgctcaactcattttgggataccaccccgctgctacttgggcgaggtaagtaaggctaagctgatgattgtatgcaaagtctactatgggaagct Alignment from GeneWise ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCT-- -- ACGTGGTACTGgtaagcatttttgaaggcggtttctctcttaacttacagGGTCCCAGTGCTCTACTTTACCAGATGAGATGCTCAACTCATTTTGGGATACCACCCCGCTGCTACTTGGGCGAGGTAAgtaaggctaagctgatgattgtatgcaaagtctactatgggaagCT #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTG-CGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacaggcTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGG-ATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacaggcTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Exonerate_coding2genome aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacaggctaccccaatgaggaggctgcagaggtagtgctggtttcattgccgggatggttggagcaacacaaggacaaggtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from GeneWise CATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gtggggtccaatatgcatttacaaatctagCTTCACC------TTAACAGGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCT-ACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg atagttccacctggatcacatccgcgcgagcatacttaattgttccccagtTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGCAAAGTGCCATACCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTCACTT-TCCCGAGCCCTTCGCACAACTCATGGCTggtaagagagataaggttgtgtggagctgaaatgcaggcccctggtgcgaa Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg atagttccacctggatcacatccgcgcgagcatacttaattgttccccagtTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGCAAAGTGCCATACCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTCACTTTCCCGAGCCCTTCGCACAACTCATGGCTggtaagagagataaggttgtgtggagctgaaatgcaggcccctggtgcgaa Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG atagttccacctggatcacatccgcgcgagcatacttaattgttccccagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGCAAAGTGCCATACCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTCACTTTCCCGAGCCCTTCGCACAACTCATGGCTGgtaagagagataaggttgtgtggagctgaaatgcaggcccctggtgcgaa Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG atagttccacctggatcacatccgcgcgagcatacttaattgttccccagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGCAAAGTGCCATACCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTCACTTTCCCGAGCCCTTCGCACAACTCATGGCTGgtaagagagataaggttgtgtggagctgaaatgcaggcccctggtgcgaa Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG atagttccacctggatcacatccgcgcgagcatacttaattgttccccagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGCAAAGTGCCATACCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTCACTTTCCCGAGCCCTTCGCACAACTCATGGCTGgtaagagagataaggttgtgtggagctgaaatgcaggcccctggtgcgaa Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG atagttccacctggatcacatccgcgcgagcatacttaattgttccccagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGCAAAGTGCCATACCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTCACTTTCCCGAGCCCTTCGCACAACTCATGGCTGgtaagagagataaggttgtgtggagctgaaatgcaggcccctggtgcgaa Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG atagttccacctggatcacatccgcgcgagcatacttaattgttccccagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGCAAAGTGCCATACCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTCACTTTCCCGAGCCCTTCGCACAACTCATGGCTGgtaagagagataaggttgtgtggagctgaaatgcaggcccctggtgcgaa Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG atagttccacctggatcacatccgcgcgagcatacttaattgttccccagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGCAAAGTGCCATACCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTCACTTTCCCGAGCCCTTCGCACAACTCATGGCTGgtaagagagataaggttgtgtggagctgaaatgcaggcccctggtgcgaa #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAG-CAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagggGATGACATCAGCTCTCTTCAGCCAGGAAA-CACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCaggtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagggGATGACATCAGCTCTCTTCAGCCAGGAAACACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCaggtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagGGGATGACATCAGCTCTCTTCAGCCAGGAAACACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCAGgtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagGGGATGACATCAGCTCTCTTCAGCCAGGAAACACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCAGgtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagGGGATGACATCAGCTCTCTTCAGCCAGGAAACACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCAGgtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Exonerate_protein2genome tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccaggggatgacatcagctctcttcagccaggaaacaccatccttcgtgaatgccgccaccccaatgttgtggcctacatcagtagctacctcaggtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Exonerate_coding2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagGGGATGACATCAGCTCTCTTCAGCCAGGAAACACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCAGgtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagGGGATGACATCAGCTCTCTTCAGCCAGGAAACACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCAGgtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca #### Map4k2_ID1625_5 --> 2 - 0 Original Alignment ccACTGGGCCCCTGGAAGAACGGCAGATTGCC-TATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaattccttctatctaaggtgctgtgtttctgtttttagctACCGGACCACTTGAAGAAAGGCAAATTGCCCTATGTTTGTT-GGCAGCCCTTAGGgtataggatttgctaacagtatcaatttgagcagttagattgcccattag Alignment from CESAR ccACTGGGCCCCTGGAAGAACGGCAGATTGCC-TATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaattccttctatctaaggtgctgtgtttctgtttttagctACCGGACCACTTGAAGAAAGGCAAATTGCCCTATGTTTGTTGGC-AGCCCTTAGGgtataggatttgctaacagtatcaatttgagcagttagattgcccattag Alignment from Spaln_aa2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaattccttctatctaaggtgctgtgtttctgtttttagCTACCGGACCACTTGAAGAAAGGCAAATTGCCCTATGTTTGTTGGCAGCCCTTAGGgtataggatttgctaacagtatcaatttgagcagttagattgcccattag Alignment from Spaln_nt2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCC-TATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaattccttctatctaaggtgctgtgtttctgtttttagCTACCGGACCACTTGAAGAAAGGCAAATTGCCCTATGTTTGTTGGCA-GCCCTTAGGgtataggatttgctaacagtatcaatttgagcagttagattgcccattag Alignment from Pairagon CCACTGGGCCCCTGGAAGAACGGCAGATTG-CCTATGTTT cttaaagatatcaattccttctatctaaggtgctgtgtttctgtttttagCTACCGGACCACTTGAAGAAAGGCAAATTGCCCTATGTTTgttggcagcccttagggtataggatttgctaacagtatcaatttgagcagttagattgcccattag Alignment from Exonerate_protein2genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaattccttctatctaaggtgctgtgtttctgtttttagCTACCGGACCACTTGAAGAAAGGCAAATTGCCCTATGTTTGTTGGCAGCCCTTAGGgtataggatttgctaacagtatcaatttgagcagttagattgcccattag Alignment from Exonerate_coding2genome cttaaagatatcaattccttctatctaaggtgctgtgtttctgtttttagctaccggaccacttgaagaaaggcaaattgccctatgtttgttggcagcccttagggtataggatttgctaacagtatcaatttgagcagttagattgcccattag Alignment from GeneWise CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttaaagatatcaattccttctatctaaggtgctgtgtttctgtttttagCTACCGGACCACTTGAAGAAAGGCAAATTGCCCTATGTTTGTTGGCAGCCCTTAGGgtataggatttgctaacagtatcaatttgagcagttagattgcccattag #### Map4k2_ID1627_6 --> 0 - 0 Original Alignment GGGCTCCACCACCTGCATTCTCAGGGG-AAAATTCACCGAGACATTAAG------ GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCTGCGTTCTAAGGGACAAAA-TCACAGAGACATTAAGGTAGGAgtgagttatttttgtctttggttttcagGGTGCAAACCTTCTGCTCACAT Alignment from CESAR GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCTGCGTTCTAAGGGACAAAATCACAGAGACATTAAGgtaggagtggagccgatgtcaccttctgctgcagGGTGCAAACCTTCTGCTCACAT Alignment from Spaln_aa2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCTGCGTTCTAAGGGACAAAATCACAGAGACATTAAGgtaggagtgagttatttttgtctttggttttcagGGTGCAAACCTTCTGCTCACAT Alignment from Spaln_nt2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCTGCGTTCTAAGGGACAAAATCACAGAGACATTAAGgtaggagtgagttatttttgtctttggttttcagGGTGCAAACCTTCTGCTCACAT Alignment from Pairagon GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCTGCGTTCTAAGGGACAAAATCACAGAGACATTAAGgtaggagtgagttatttttgtctttggttttcagGGTGCAAACCTTCTGCTCACAT Alignment from Exonerate_protein2genome agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagggcctccatcacctgcgttctaagggacaaaatcacagagacattaaggtaggagtgagttatttttgtctttggttttcagggtgcaaaccttctgctcacat Alignment from Exonerate_coding2genome agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagggcctccatcacctgcgttctaagggacaaaatcacagagacattaaggtaggagtgagttatttttgtctttggttttcagggtgcaaaccttctgctcacat Alignment from GeneWise GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCTGCGTTCTAAGGGACAAAATCACAGAGACATTAAGgtaggagtgagttatttttgtctttggttttcagGGTGCAAACCTTCTGCTCACAT #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGCAGC-TTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg tgtgctcgtccctcctgatacccttgacttttcccctctgcttgtaacaggGCACTGATGCTCATGTCAAAGAGCAGTCTTCCAGCCAC-TAAGCTAAGAGATAAGACACGTtggtaatactccaccacaactgggaaattcccagcttactgtatgagataga Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg tgtgctcgtccctcctgatacccttgacttttcccctctgcttgtaacaggGCACTGATGCTCATGTCAAAGAGCAGTCTTCCAGCCACTAAGCTAAGAGATAAGACACGTtggtaatactccaccacaactgggaaattcccagcttactgtatgagataga Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgtgctcgtccctcctgatacccttgacttttcccctctgcttgtaacagGGCACTGATGCTCATGTCAAAGAGCAGTCTTCCAGCCACTAAGCTAAGAGATAAGACACGTTGgtaatactccaccacaactgggaaattcccagcttactgtatgagataga Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgtgctcgtccctcctgatacccttgacttttcccctctgcttgtaacagGGCACTGATGCTCATGTCAAAGAGCAGTCTTCCAGCCACTAAGCTAAGAGATAAGACACGTTGgtaatactccaccacaactgggaaattcccagcttactgtatgagataga Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAGCAG-CTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgtgctcgtccctcctgatacccttgacttttcccctctgcttgtaacagGGCACTGATGCTCATGTCAAAGAGCAGTCTTCCAGCCA-CTAAGCTAAGAGATAAGACACGTTGgtaatactccaccacaactgggaaattcccagcttactgtatgagataga Alignment from Exonerate_protein2genome tgtgctcgtccctcctgatacccttgacttttcccctctgcttgtaacagggcactgatgctcatgtcaaagagcagtcttccagccactaagctaagagataagacacgttggtaatactccaccacaactgggaaattcccagcttactgtatgagataga Alignment from Exonerate_coding2genome tgtgctcgtccctcctgatacccttgacttttcccctctgcttgtaacagggcactgatgctcatgtcaaagagcagtcttccagccactaagctaagagataagacacgttggtaatactccaccacaactgggaaattcccagcttactgtatgagataga Alignment from GeneWise GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgtgctcgtccctcctgatacccttgacttttcccctctgcttgtaacagGGCACTGATGCTCATGTCAAAGAGCAGTCTTCCAGCCACTAAGCTAAGAGATAAGACACGTTGgtaatactccaccacaactgggaaattcccagcttactgtatgagataga #### Map4k2_ID1635_14 --> 2 - 0 Original Alignment ttCACCAAGTGAAATTCGGT------------------GCTCCTCGC-CGGAAGGAGACAGATCCTCTCAATGAACCG aataagatcaggtacctgcagagggactccgtcccttatacctgatgcagttCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGACTCCCCAACCAGA-AGAGACAGAC------AATGATCCAgtgagataaaggtatagggggagaggctgaggtcgactcccacttcaggt Alignment from CESAR ttCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACA------------GATCCTCTCAATGAACCG aataagatcaggtacctgcagagggactccgtcccttatacctgatgcagttCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGACTCCCCAACCAGAAGAGACAGACAATGATCCAgtgagataaaggtatagggggagaggctgaggtcgactcccacttcaggt Alignment from Spaln_aa2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACA------------GATCCTCTCAATGAACCG aataagatcaggtacctgcagagggactccgtcccttatacctgatgcagTTCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGACTCCCCAACCAGAAGAGACAGACAATGATCCAgtgagataaaggtatagggggagaggctgaggtcgactcccacttcaggt Alignment from Spaln_nt2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGAC------------AGATCCTCTCAATGAACCG aataagatcaggtacctgcagagggactccgtcccttatacctgatgcagTTCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGACTCCCCAACCAGAAGAGACAGACAATGATCCAgtgagataaaggtatagggggagaggctgaggtcgactcccacttcaggt Alignment from Pairagon TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAG------------------GAGACAGATCCTCTCAATGAACCG aataagatcaggtacctgcagagggactccgtcccttatacctgatgcagTTCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGACTCCCCAACCAGAAGAGACAGA------CAATGATCCAgtgagataaaggtatagggggagaggctgaggtcgactcccacttcaggt Alignment from Exonerate_protein2genome aataagatcaggtacctgcagagggactccgtcccttatacctgatgcagttcaccaagtggaattcgcagctccacaccagaaggagactccccaaccagaagagacagacaatgatccagtgagataaaggtatagggggagaggctgaggtcgactcccacttcaggt Alignment from Exonerate_coding2genome aataagatcaggtacctgcagagggactccgtcccttatacctgatgcagttcaccaagtggaattcgcagctccacaccagaaggagactccccaaccagaagagacagacaatgatccagtgagataaaggtatagggggagaggctgaggtcgactcccacttcaggt Alignment from GeneWise TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACA------------GATCCTCTCAATGAACCG aataagatcaggtacctgcagagggactccgtcccttatacctgatgcagTTCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGACTCCCCAACCAGAAGAGACAGACAATGATCCAgtgagataaaggtatagggggagaggctgaggtcgactcccacttcaggt #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTgg ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGACGCTCCCTGG-AAAAGAGGAACTAAGTgggtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from CESAR TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTAAGTgggtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Pairagon TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Exonerate_coding2genome ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagtgggaagaggagtggacgctccctggaaaagaggaactaagtgggtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGACGCTCCCTGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg #### Map4k2_ID1637_16 --> 1 - 2 Original Alignment gAGCCTGCTGCAGTCAGTC-CAGGAGGCCCTGGAGGAAag gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacaggAGCCTGTTGCAGTCAGTGCCAGG-AGCTCTGGAGGATaagtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from CESAR gAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAag gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacaggAGCCTGTTGCAGTCAGTGCCAGGAGCTCTGGAGGATaagtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Spaln_aa2Genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacagGAGCCTGTTGCAGTCAGTGCCAGGAGCTCTGGAGGATAAgtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Spaln_nt2Genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacagGAGCCTGTTGCAGTCAGTGCCAGGAGCTCTGGAGGATAAgtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Pairagon GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacagGAGCCTGTTGCAGTCAGTGCCAGGAGCTCTGGAGGATAAgtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Exonerate_protein2genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacagGAGCCTGTTGCAGTCAGTGCCAGGAGCTCTGGAGGATAAgtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Exonerate_coding2genome gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacaggagcctgttgcagtcagtgccaggagctctggaggataagtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from GeneWise gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacaggagcctgttgcagtcagtgccaggagctctggaggataagtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag #### Map4k2_ID1638_17 --> 1 - 0 Original Alignment gAGCCTGACTATC-CGGCCAGCCTTAGAACTCCAG actatcccccttgcaaatagtaataccaactgtgcctctttgctttccaggAGCCTGGCTATCCCGGCCAG-CTTAGAACTGCAGgtgagggttgatagtattatactaggagtggactcatagactagtgagct Alignment from CESAR gAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatcccccttgcaaatagtaataccaactgtgcctctttgctttccaggAGCCTGGCTATCCCGGCCAGCTTAGAACTGCAGgtgagggttgatagtattatactaggagtggactcatagactagtgagct Alignment from Spaln_aa2Genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatcccccttgcaaatagtaataccaactgtgcctctttgctttccagGAGCCTGGCTATCCCGGCCAGCTTAGAACTGCAGgtgagggttgatagtattatactaggagtggactcatagactagtgagct Alignment from Spaln_nt2Genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatcccccttgcaaatagtaataccaactgtgcctctttgctttccagGAGCCTGGCTATCCCGGCCAGCTTAGAACTGCAGgtgagggttgatagtattatactaggagtggactcatagactagtgagct Alignment from Pairagon GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatcccccttgcaaatagtaataccaactgtgcctctttgctttccagGAGCCTGGCTATCCCGGCCAGCTTAGAACTGCAGgtgagggttgatagtattatactaggagtggactcatagactagtgagct Alignment from Exonerate_protein2genome actatcccccttgcaaatagtaataccaactgtgcctctttgctttccaggagcctggctatcccggccagcttagaactgcaggtgagggttgatagtattatactaggagtggactcatagactagtgagct Alignment from Exonerate_coding2genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatccccctTGCAAATAGTAATACCAACTGTGCCTCTTTGCTTTCCAGGAGCCTGGCTATCCCGGCCAGCTTAGAACTGCAGgtgagggttgatagtattatactaggagtggactcatagactagtgagct Alignment from GeneWise actatcccccttgcaaatagtaataccaactgtgcctctttgctttccaggagcctggctatcccggccagcttagaactgcaggtgagggttgatagtattatactaggagtggactcatagactagtgagct #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGC-CCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacaggcACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATG-CCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctagttcctgggttc Alignment from CESAR gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacaggcACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctactttgttctgtc Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctagttcctgggttc Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctagttcctgggttc Alignment from Pairagon ------------------------------------------CTCCCCAGGTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG GTTGCGGACATGCCAGGGGCTGGCACCATAGCCCTTGTCCTACCCTACAGGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctagttcctgggttc Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctagttcctgggttc Alignment from Exonerate_coding2genome gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacaggcaccttgtcagcccccccagctcctgatagcccatgcctgctaccaactgcttgggctaccctaaagcagcaagaggaccgtgaggtaaggcagataactggatggtaagggtgggaatcctagttcctgggttc Alignment from GeneWise GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctagttcctgggttc #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGCCATGGG-CTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCCTTCCTCCCA-CCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactggctcccaccccttgactct Alignment from CESAR CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCCTTCCTCCCACCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactggtctttctgtcaccctggg Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCCTTCCTCCCACCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactggctcccaccccttgactct Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGC-TTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCCTTCCTCCCA-CCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactggctcccaccccttgactct Alignment from Pairagon CGATCATCCTGCCATGG-GCTTCCTCCCACCCCCAAGG------------------------------------------------------T taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCCTTCCTCCCA-CCCGAAGGTCCCTGTGAGGGGTGCCATGATGTCCTAGCCAACTGGCTCCCACCCCTTGACTCT Alignment from Exonerate_protein2genome GCCATGGGCT TCCTCCCACCCCCAAGGT TAACTGGATGgtaagggtgggaatcctactttgttctgtcttctctacagcggtcatcctgttatggtccttcctcccacccgaaggtccctgtgaggggtgccatgatgtcctagccaactggCTCCCACCCCTTGACTCT Alignment from Exonerate_coding2genome GT taactggatggtaagggtgggaatcctactttgttctgtcttctctacagcggtcatcctgttatggtccttcctcccacccgaaggtccctgtgaggggtgccatgatgtcctagccaactggctcccaccccttgactCT Alignment from GeneWise CGATCATCCTGCCATGGGCTTCCTCC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagcggtcatcctgttatggtccttcctcccacccgaaggtccctgtgaggggtgccatgatgtcctagCCAACTGGCTCCCACCCCTTGACT-- #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGC-CCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg gcggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCTCTGC-GATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAggtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg ggggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCTCTGCGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAggtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gcggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCTCTGCGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gcggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCTCTGCGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Pairagon ------------------------------------------------ACATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG GCGGTGCCATGATGTCCTAGCCAACTGGTCTTTCTGTCACCCTGGGCTAGATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCTCTGCGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gcggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCTCTGCGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gcggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCTCTGCGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gcggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCTCTGCGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag #### Map4k2_ID1643_22 --> 2 - 0 Original Alignment acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTAT-ACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttatattcagaggccagcatgatgtgtgtcttttgtctgcctctcaagacCAGTTCTTGGTAGTGGGAGCTAAGGAGGGCTTCTATCACCCTCA-CCTGCATAAACTGCATGAGGATCGAATGGAAAAGgcagggcttgtgggtctttgctgtcaccctagCTGATCTCTCAGCGCTAC Alignment from CESAR acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttatattcagaggccagcatgatgtgtgtcttttgtctgcctctcaagacCAGTTCTTGGTAGTGGGAGCTAAGGAGGGCTTCTATCACCCTCACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgcagggcttgggtgatgtgtttatgattaaagCTGATCTCTCAGCGCTAC Alignment from Spaln_aa2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttatattcagaggccagcatgatgtgtgtcttttgtctgcctctcaagACCAGTTCTTGGTAGTGGGAGCTAAGGAGGGCTTCTATCACCCTCACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgcagggcttgtgggtctttgctgtcaccctagCTGATCTCTCAGCGCTAC Alignment from Spaln_nt2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttatattcagaggccagcatgatgtgtgtcttttgtctgcctctcaagACCAGTTCTTGGTAGTGGGAGCTAAGGAGGGCTTCTATCACCCTCACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgcagggcttgtgggtctttgctgtcaccctagCTGATCTCTCAGCGCTAC Alignment from Pairagon ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGA--------------------------------AGCTCATCTCCCAGCGCTGC agttatattcagaggccagcatgatgtgtgtcttttgtctgcctctcaagACCAGTTCTTGGTAGTGGGAGCTAAGGAGGGCTTCTATCACCCTCACCTGCATAAACTGCATGAGGATCGAATGGAAAAGGCAGGGCTTGTGGGTCTTTGCTGTCACCCTAGCTGATCTCTCAGCGCTAC Alignment from Exonerate_protein2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttatattcagaggccagcatgatgtgtgtcttttgtctgcctctcaagACCAGTTCTTGGTAGTGGGAGCTAAGGAGGGCTTCTATCACCCTCACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgcagggcttgtgggtctttgctgtcaccctagCTGATCTCTCAGCGCTAC Alignment from Exonerate_coding2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGC agttatattcagaggccagcatgatgtgtgtcttttgtctgcctctcaagACCAGTTCTTGGTAGTGGGAGCTAAGGAGGGCTTCTATCACCCTCACCTGCATAAACTGCATGAGGATCGAATGGAAAAGgcagggcttgtgggtctttgctgtcaccctagCTGATCTCTCAGCGCTAC Alignment from GeneWise ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG---------------------------------CTCATCTCCCAGCGCTG agttatattcagaggccagcatgatgtgtgtcttttgtctgcctctcaagACCAGTTCTTGGTAGTGGGAGCTAAGGAGGGCTTCTATCACCCTCACCTGCATAAACTGCATGAGGATCGAATGGAAAAGGCAGGGCTTGTGGGTCTTTGCTGTCACCCTAG-CTGATCTCTCAGCGCTA #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCC-TGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg GAGGATCGAATGGAAAAGgtgagtcttgggtgatgtgtttatgattaaagCTGATCTCTCAGCGCTACTCACTGGCTCT-CTGTGTGAATAATGTATTGCTGGCACTCCCAggtgagtgatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from CESAR GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg GAGGATCGAATGGAAAAGgcagggcttgggtgatgtgtttatgattaaagCTGATCTCTCAGCGCTACTCACTGGCTCTCTGTGTGAATAATGTATTGCTGGCACTCCCAggtgagtgatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Spaln_aa2Genome GAGGACACAATGGAG--------------------------------AAGCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGGTGAGTCTTGGGTGATGTGTTTATGATtaAAGCTGATCTCTCAGCGCTACTCACTGGCTCTCTGTGTGAATAATGTATTGCTGGCACTCCCAGgtgagtgatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Spaln_nt2Genome GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGgtgagtcttgggtgatgtgtttatgattaaagCTGATCTCTCAGCGCTACTCACTGGCTCTCTGTGTGAATAATGTATTGCTGGCACTCCCAGgtgagtgatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Pairagon GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTC-CTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGgtgagtcttgggtgatgtgtttatgattaaagCTGATCTCTCAGCGCTACTCACTGGCTCT-CTGTGTGAATAATGTATTGCTGGCACTCCCAGgtgagtgatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Exonerate_protein2genome GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGgtgagtcttgggtgatgtgtttatgattaaagCTGATCTCTCAGCGCTACTCACTGGCTCTCTGTGTGAATAATGTATTGCTGGCACTCCCAGgtgagtgatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Exonerate_coding2genome gaggatcgaatggaaaaggtgagtcttgggtgatgtgtttatgattaaagctgatctctcagcgctactcactggctctctgtgtgaataatgtattgctggcactcccaggtgagtgatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from GeneWise GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAGGGAA GAGGATCGAATGGAAAAGgtgagtcttgggtgatgtgtttatgattaaagCTGATCTCTCAGCGCTACTCACTGGCTCTCTGTGTGAATAATGTATTGCTGGCACTCCCAGGTGAgtgatggcagctgtagagccagcctggataacatgttcccaagggt #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCC-ACGGAGAGTAACTGTGAGGTGCCTCGGCCCag cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCCACGGAGA-TAACTGTGAGGTGCCTCAGCCCaggtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCCACGGAGATAACTGTGAGGTGCCTCAGCCCaggtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCCACGGAGATAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCCACGGAGATAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTG-CCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCCACGGAGA-TAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCCACGGAGATAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCCACGGAGATAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCCACGGAGATAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAG-GCCTCCATCCAGAATGGTAAAGACag ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGCGCCT-CATTCAGAATGGAAAAGACaggtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGCGCCTCATTCAGAATGGAAAAGACaggtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGCGCCTCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGCGCCTCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGCGCCTCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGCGCCTCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGCGCCTCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGCGCCTCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCT-GGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tcgaaaggacttgtacagagagattgggctagctttactttaccatgtagccGTCCCCGGCATTCCCACCTCCAATTCCTACTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCACGGCCTGG-TAGGAAGAAGACTACC---GCACCCTCCACAgtaatccctaaagttactctccaaggggctaagtgcactacattagaggc Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tcgaaaggacttgtacagagagattgggctagctttactttaccatgtagccGTCCCCGGCATTCCCACCTCCAATTCCTACTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCACGGCCTGGTAGGAAGAAGACTACC---GCACCCTCCACAgtaatccctaaagttactctccaaggggctaagtgcactacattagaggc Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tcgaaaggacttgtacagagagattgggctagctttactttaccatgtagCCGTCCCCGGCATTCCCACCTCCAATTCCTACTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCACGGCCTGGTAGGAAGAAGACTACC---GCACCCTCCACAgtaatccctaaagttactctccaaggggctaagtgcactacattagaggc Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCT-GGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tcgaaaggacttgtacagagagattgggctagctttactttaccatgtagCCGTCCCCGGCATTCCCACCTCCAATTCCTACTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCACGGCCTGG-TAGGAAGAAG---ACTACCGCACCCTCCACAgtaatccctaaagttactctccaaggggctaagtgcactacattagaggc Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCC-TGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tcgaaaggacttgtacagagagattgggctagctttactttaccatgtagCCGTCCCCGGCATTCCCACCTCCAATTCCTACTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCACGGCCTGG-TAGGAAGAAGACTA---CCGCACCCTCCACAgtaatccctaaagttactctccaaggggctaagtgcactacattagaggc Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tcgaaaggacttgtacagagagattgggctagctttactttaccatgtagCCGTCCCCGGCATTCCCACCTCCAATTCCTACTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCACGGCCTGGTAGGAAGAAGACTACC---GCACCCTCCACAgtaatccctaaagttactctccaaggggctaagtgcactacattagaggc Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tcgaaaggacttgtacagagagattgggctagctttactttaccatgtagCCGTCCCCGGCATTCCCACCTCCAATTCCTACTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCACGGCCTGGTAGGAAGAAGACTACC---GCACCCTCCACAgtaatccctaaagttactctccaaggggctaagtgcactacattagaggc Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tcgaaaggacttgtacagagagattgggctagctttactttaccatgtagCCGTCCCCGGCATTCCCACCTCCAATTCCTACTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCACGGCCTGGTAGGAAGAAGACTACC---GCACCCTCCACAgtaatccctaaagttactctccaaggggctaagtgcactacattagaggc #### Mark2_ID2111_10 --> 0 - 1 Original Alignment CAAATTATG---------------AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAG-CTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTT-TGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAggtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from CESAR CAAATTATG---------------AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTTTGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAggtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Spaln_aa2Genome CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTTTGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Spaln_nt2Genome CAAATT--ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagcaaattatgaaagATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTTTGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Pairagon CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTTTGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Exonerate_protein2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagcaaattatgaaagatCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTTTGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Exonerate_coding2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagcaaattatgaaagatCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTTTGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from GeneWise ---------------CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACCTAAAGCTTTTGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAGTACTGTCACCAG-AAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGCAAGTTCA-TGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from CESAR ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGCAAGTTCATGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGCAAGTTCATGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGCAAGTTCATGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Pairagon ATAGTGTCTGCTGTGCAGTACTGTCACCAG-AAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGCAAGTTCA-TGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGCAAGTTCATGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGCAAGTTCATGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from GeneWise ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGCAAGTTCATGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATT-GAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattaagatctgttaagaacgactcgggtttctgggtttcagtGCACCTGACATTCGAGCTCC-GGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtggagttgtggcctttgttttcaatgacaaaagcactgccttctcctac Alignment from CESAR tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattaagatctgttaagaacgactcgggtttctgggtttcagtGCACCTGACATTCGAGCTCCGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtggagttgtggcctttgttttcaatgacaaaagcactgccttctcctac Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattaagatctgttaagaacgactcgggtttctgggtttcagTGCACCTGACATTCGAGCTCCGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtggagttgtggcctttgttttcaatgacaaaagcactgccttctcctac Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattaagatctgttaagaacgactcgggtttctgggtttcagTGCACCTGACATTCGAGCTCCGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtggagttgtggcctttgttttcaatgacaaaagcactgccttctcctac Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattaagatctgttaagaacgactcgggtttctgggtttcagTGCACCTGACATTCGAGCTCCGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtggagttgtggcctttgttttcaatgacaaaagcactgccttctcctac Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattaagatctgttaagaacgactcgggtttctgggtttcagTGCACCTGACATTCGAGCTCCGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtggagttgtggcctttgttttcaatgacaaaagcactgccttctcctac Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattaagatctgttaagaacgactcgggtttctgggtttcagTGCACCTGACATTCGAGCTCCGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtggagttgtggcctttgttttcaatgacaaaagcactgccttctcctac Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattaagatctgttaagaacgactcgggtttctgggtttcagTGCACCTGACATTCGAGCTCCGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtggagttgtggcctttgttttcaatgacaaaagcactgccttctcctac #### Ms4a5_ID3161_4 --> 0 - 0 Original Alignment ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGT-ATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTCATGCAGT-TGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from CESAR ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTCATGCAGTTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Spaln_aa2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTCATGCAGTTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Spaln_nt2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGT-ATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTCATGCAGT-TGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Pairagon ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGT-ATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTCATGCAGT-TGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Exonerate_protein2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTCATGCAGTTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Exonerate_coding2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTCATGCAGTTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from GeneWise ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTCATGCAGTTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAG-ATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg cacacttctattagtacattatggctgactctgtgctttttgtcttacaggaGAGTCAGATAATAGAAACCAACAGAAGATGGAGCATGA-AGTCTGGGACCCAGGCAATCCCCTCACAGACCAGCAGATTGACCAGTTCCTAGTTGTGGCTcggtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg cacacttctattagtacattatggctgactctgtgctttttgtcttacaggaGAGTCAGATAATAGAAACCAACAGAAGATGGAGCATGAAGTCTGGGACCCAGGCAATCCCCTCACAGACCAGCAGATTGACCAGTTCCTAGTTGTGGCTcggtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGCATGAAGTCTGGGACCCAGGCAATCCCCTCACAGACCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGCATGAAGTCTGGGACCCAGGCAATCCCCTCACAGACCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGCATGAAGTCTGGGACCCAGGCAATCCCCTCACAGACCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGCATGAAGTCTGGGACCCAGGCAATCCCCTCACAGACCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Exonerate_coding2genome cacacttctattagtacattatggctgactctgtgctttttgtcttacaggagagtcagataatagaaaccaacagaagatggagcatgaagtctgggacccaggcaatcccctcacagaccagcagattgaccagttcctagttgtggctcggtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGCATGAAGTCTGGGACCCAGGCAATCCCCTCACAGACCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCT-GCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTta ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTCGCCGAAG-AGACAGTATATTGAAACAGGTGTATATCCCCACTtagtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTta ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTCGCCGAAGAGACAGTATATTGAAACAGGTGTATATCCCCACTtagtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTCGCCGAAGAGACAGTATATTGAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Spaln_nt2Genome AAAAGATTGAAAGCT-GCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTCGCCGAAG-AGACAGTATATTGAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Pairagon AAAAGATTGAAAGCT-GCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTCGCCGAAG-AGACAGTATATTGAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTCGCCGAAGAGACAGTATATTGAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Exonerate_coding2genome ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagaaaaggctaaaagctcgccgaagagacagtatattgaaacaggtgtatatccccacttagtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from GeneWise AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTCGCCGAAGAGACAGTATATTGAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCA-AAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa atcatggtaggagaaagtcaagtggtctctaacagtatttgttttcacagtACTAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCGCAAGCCTG-CATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATagtaagatattcatgtggcatacctttactattagatgttcatggtttgtt Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa atcatggtaggagaaagtcaagtggtctctaacagtatttgttttcacagtACTAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCGCAAGCCTGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATagtaagatattcatgtggcatacctttactattagatgttcatggtttgtt Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcatggtaggagaaagtcaagtggtctctaacagtatttgttttcacagTACTAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCGCAAGCCTGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagatattcatgtggcatacctttactattagatgttcatggtttgtt Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcatggtaggagaaagtcaagtggtctctaacagtatttgttttcacagTACTAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCGCAAGCCTGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagatattcatgtggcatacctttactattagatgttcatggtttgtt Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcatggtaggagaaagtcaagtggtctctaacagtatttgttttcacagTACTAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCGCAAGCCTGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagatattcatgtggcatacctttactattagatgttcatggtttgtt Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcatggtaggagaaagtcaagtggtctctaacagtatttgttttcacagTACTAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCGCAAGCCTGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagatattcatgtggcatacctttactattagatgttcatggtttgtt Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcatggtaggagaaagtcaagtggtctctaacagtatttgttttcacagTACTAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCGCAAGCCTGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagatattcatgtggcatacctttactattagatgttcatggtttgtt Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcatggtaggagaaagtcaagtggtctctaacagtatttgttttcacagTACTAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCGCAAGCCTGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagatattcatgtggcatacctttactattagatgttcatggtttgtt #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCT-CGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagttGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTA-TGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagttGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTATGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTATGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTATGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTATGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTATGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTATGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTATGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta #### Myof_ID7468_34 --> 0 - 0 Original Alignment GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATG-GTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGCGTCCCACAGG-GATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from CESAR GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGCGTCCCACAGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Spaln_aa2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGCGTCCCACAGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Spaln_nt2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGCGTCCCACAGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Pairagon GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATG-GTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGCGTCCCACA-GGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Exonerate_protein2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGCGTCCCACAGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGCGTCCCACAGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc #### Myof_ID7472_30 --> 0 - 1 Original Alignment GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACT-GTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACa tgcttgttatggatgagggaagccataatcacctccactcccaactccagGTT---GACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCATAGTGCCAGCACTCCTGTTTGGGG-AAACACACCCATTGTTTCCTGTAATTATGATagtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from CESAR GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACa tgcttgttatggatgagggaagccataatcacctccactcccaactccag---GTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCATAGTGCCAGCACTCCTGTTTGGGGAAACACACCCATTGTTTCCTGTAATTATGATagtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Spaln_aa2Genome GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccag---GTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCATAGTGCCAGCACTCCTGTTTGGGGAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Spaln_nt2Genome GCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccagGTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCATAGTGCCAGCACTCCTGTTTGGGGAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Pairagon GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACT-GTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccag---GTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCATAGTGCCAGCACTCCTGTTTGG-GGAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Exonerate_protein2genome GCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccagGTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCATAGTGCCAGCACTCCTGTTTGGGGAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccagGTT---GACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCATAGTGCCAGCACTCCTGTTTGGGGAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAG-ACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGCACTCGCA-TGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from CESAR GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGCACTCGCATGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGCACTCGCATGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGCACTCGCATGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Pairagon GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAG-ACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGCACTCGCA-TGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGCACTCGCATGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGCACTCGCATGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGCACTCGCATGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCT-GAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcaggtGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTCGAAGCCGTGG-GGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcaggtGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTCGAAGCCGTGGGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTCGAAGCCGTGGGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCT-GAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTCGAAGCCGTG-GGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCT-GAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTCGAAGCCGTG-GGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTCGAAGCCGTGGGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTCGAAGCCGTGGGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTCGAAGCCGTGGGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg cctgaggtcactgtgcccacagactaatccctcccccacttctgctttagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGCTACAAGC-AGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCGCCAGAGACAggtgagtatgcgtgtctgaagggttcctaactatgcctggcttctcctaac Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg cctgaggtcactgtgcccacagactaatccctcccccacttctgctttagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGCTACAAGCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCGCCAGAGACAggtgagtatgcgtgtctgaagggttcctaactatgcctggcttctcctaac Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctgaggtcactgtgcccacagactaatccctcccccacttctgctttagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGCTACAAGCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCGCCAGAGACAGgtgagtatgcgtgtctgaagggttcctaactatgcctggcttctcctaac Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctgaggtcactgtgcccacagactaatccctcccccacttctgctttagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGCTACAAG-CAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCGCCAGAGACAGgtgagtatgcgtgtctgaagggttcctaactatgcctggcttctcctaac Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctgaggtcactgtgcccacagactaatccctcccccacttctgctttagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGCTACAAGCA-GAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCGCCAGAGACAGgtgagtatgcgtgtctgaagggttcctaactatgcctggcttctcctaac Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctgaggtcactgtgcccacagactaatccctcccccacttctgctttagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGCTACAAGCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCGCCAGAGACAGgtgagtatgcgtgtctgaagggttcctaactatgcctggcttctcctaac Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctgaggtcactgtgcccacagactaatccctcccccacttctgctttagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGCTACAAGCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCGCCAGAGACAGgtgagtatgcgtgtctgaagggttcctaactatgcctggcttctcctaac Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctgaggtcactgtgcccacagactaatccctcccccacttctgctttagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGCTACAAGCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCGCCAGAGACAGgtgagtatgcgtgtctgaagggttcctaactatgcctggcttctcctaac #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggacaatgggtacaggtatccctgatgactgtgaattttgttttcaggTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGA-TTCAGAGCGTATCATTGTGCGGgtaccaactacaactacaccctagcagcccagatttcaaagcatatcatt Alignment from CESAR gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggacaatgggtacaggtatccctgatgactgtgaattttgttttcaggTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGA-TTCAGAGCGTATCATTGTGCGGgtaccaactacaactacaccctagcagcccagatttcaaagcatatcatt Alignment from Spaln_aa2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggacaatgggtacaggtatccctgatgactgtgaattttgttttcagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTCAGAGCGTATCATTGTGCGGgtaccaactacaactacaccctagcagcccagatttcaaagcatatcatt Alignment from Spaln_nt2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggacaatgggtacaggtatccctgatgactgtgaattttgttttcagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTCAGAGCGTATCATTGTGCGGgtaccaactacaactacaccctagcagcccagatttcaaagcatatcatt Alignment from Pairagon GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggacaatgggtacaggtatccctgatgactgtgaattttgttttcagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGAT-TCAGAGCGTATCATTGTGCGGgtaccaactacaactacaccctagcagcccagatttcaaagcatatcatt Alignment from Exonerate_protein2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggacaatgggtacaggtatccctgatgactgtgaattttgttttcagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTCAGAGCGTATCATTGTGCGGgtaccaactacaactacaccctagcagcccagatttcaaagcatatcatt Alignment from Exonerate_coding2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggacaatgggtacaggtatccctgatgactgtgaattttgttttcagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTCAGAGCGTATCATTGTGCGGgtaccaactacaactacaccctagcagcccagatttcaaagcatatcatt Alignment from GeneWise GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggacaatgggtacaggtatccctgatgactgtgaattttgttttcagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTCAGAGCGTATCATTGTGCGGgtaccaactacaactacaccctagcagcccagatttcaaagcatatcatt #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCC-TATCAGTTCTTCCGAGAGGCACTGca ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagcACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGT-CTTCCATGAGACACTTcagtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from CESAR cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagcACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTCTTCCATGAGACACTTcagtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCC-TATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAG-TCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Pairagon CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCG-CCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAG-TCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Exonerate_coding2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAG-CTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag tgcgtctctccatggtgtccaggtgctcagtttttctttgtttgttttagcTATGAAGTACAGCCTAGAAA-CAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACaggtagccagcatcttgcaagaattggcttgctgggagaggttggtcctgag Alignment from CESAR cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag tgcgtctctccatggtgtccaggtgctcagtttttctttgtttgttttagcTATGAAGTACAGCCTAGAAACAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACaggtagccagcatcttgcaagaattggcttgctgggagaggttggtcctgag Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG tgcgtctctccatggtgtccaggtgctcagtttttctttgtttgttttagCTATGAAGTACAGCCTAGAAACAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtagccagcatcttgcaagaattggcttgctgggagaggttggtcctgag Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG tgcgtctctccatggtgtccaggtgctcagtttttctttgtttgttttagCTATGAAGTACAGCCTAGAAACAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtagccagcatcttgcaagaattggcttgctgggagaggttggtcctgag Alignment from Pairagon CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG tgcgtctctccatggtgtccaggtgctcagtttttctttgtttgttttagCTATGAAGTACAGCCTAGAAACAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtagccagcatcttgcaagaattggcttgctgggagaggttggtcctgag Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG tgcgtctctccatggtgtccaggtgctcagtttttctttgtttgttttagCTATGAAGTACAGCCTAGAAACAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtagccagcatcttgcaagaattggcttgctgggagaggttggtcctgag Alignment from Exonerate_coding2genome tgcgtctctccatggtgtccaggtgctcagtttttctttgtttgttttagctatgaagtacagcctagaaacaaggtaaggcagaaaggtctagagaagtttctcattcagattctccagctaatggccaacaggtagccagcatcttgcaagaattggcttgctgggagaggttggtcctgag Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG tgcgtctctccatggtgtccaggtgctcagtttttctttgtttgttttagCTATGAAGTACAGCCTAGAAACAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTAATGGCCAACAGgtagccagcatcttgcaagaattggcttgctgggagaggttggtcctgag #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGAC-CGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacaggTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCCACGCCT-GTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATtggtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacaggTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCCACGCCTGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATtggtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCCACGCCTGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCCACGCCTGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCCACGCCTGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCCACGCCTGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCCACGCCTGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCCACGCCTGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGG-CAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaagctaatgacacagcctgccctacttctcactcaatccttatagtAACCTCACAGGAACTTCCGCCCCTACTTTCTGGCCAGAGAG-TCTAGGCTGTGAATACAAGCTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtgagtttaggacacatgaagctaagtccccttgagggggcccccagaat Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaagctaatgacacagcctgccctacttctcactcaatccttatagtAACCTCACAGGAACTTCCGCCCCTACTTTCTGGCCAGAGAGTCTAGGCTGTGAATACAAGCTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtgagtttaggacacatgaagctaagtccccttgagggggcccccagaat Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaagctaatgacacagcctgccctacttctcactcaatccttatagTAACCTCACAGGAACTTCCGCCCCTACTTTCTGGCCAGAGAGTCTAGGCTGTGAATACAAGCTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgagtttaggacacatgaagctaagtccccttgagggggcccccagaat Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaagctaatgacacagcctgccctacttctcactcaatccttatagTAACCTCACAGGAACTTCCGCCCCTACTTTCTGGCCAGAGAGTCTAGGCTGTGAATACAAGCTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgagtttaggacacatgaagctaagtccccttgagggggcccccagaat Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaagctaatgacacagcctgccctacttctcactcaatccttatagTAACCTCACAGGAACTTCCGCCCCTACTTTCTGGCCAGAGAGTCTAGGCTGTGAATACAAGCTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgagtttaggacacatgaagctaagtccccttgagggggcccccagaat Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaagctaatgacacagcctgccctacttctcactcaatccttatagTAACCTCACAGGAACTTCCGCCCCTACTTTCTGGCCAGAGAGTCTAGGCTGTGAATACAAGCTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgagtttaggacacatgaagctaagtccccttgagggggcccccagaat Alignment from Exonerate_coding2genome aattgaagctaatgacacagcctgccctacttctcactcaatccttatagtaacctcacaggaacttccgcccctactttctggccagagagtctaggctgtgaatacaagctaggacctggatttgagccaaatgaaagtttccctgatggaaggtgagtttaggacacatgaagctaagtccccttgagggggcccccagaat Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaagctaatgacacagcctgccctacttctcactcaatccttatagTAACCTCACAGGAACTTCCGCCCCTACTTTCTGGCCAGAGAGTCTAGGCTGTGAATACAAGCTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgagtttaggacacatgaagctaagtccccttgagggggcccccagaat #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGAACA-CCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagcaAATACTACTCTGCAGGCCCAGGGCACACCCAC-GGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagcaAATACTACTCTGCAGGCCCAGGGCACACCCACGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACACCCACGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACACCCACGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACACCCACGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACACCCACGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Exonerate_coding2genome caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagcaaatactactctgcaggcccagggcacacccacggtacaaggtgtgctcttttcttcagccaaagatgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACACCCACGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTA-GAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcaggtTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTACGAAAAGC-GAATGTAAGCTTGggtaaggcacaacatcctgaggcagtggtgccttctgccacttttataggg Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcaggtTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTACGAAAAGCGAATGTAAGCTTGggtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcaggg Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTACGAAAAGCGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtggtgccttctgccacttttatagGG Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTACGAAAAGCGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtggtgccttctgccacttttatagGG Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTACGAAAAGCGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtggtgccttctgccacttttatagGG Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTACGAAAAGCGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtggtgccttctgccacttttatagGG Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG------------------------------------------------GGG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTACGAAAAGCGAATGTAAGCTTGGGTAAGGCACAACATCCTGAGGCAGTGGTGCCTTCTGCCACTTTTATAGGG #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAAT-GACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagtCCTCTGCAGGTTCAGATGGTTAACCGACC-ACTGATGCTCTTAGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACaggtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagtCCTCTGCAGGTTCAGATGGTTAACCGACCACTGATGCTCTTAGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACaggtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACCGACCACTGATGCTCTTAGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAAT-GACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACCGACCA-CTGATGCTCTTAGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACCGACCACTGATGCTCTTAGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACCGACCACTGATGCTCTTAGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Exonerate_coding2genome acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagtcctctgcaggttcagatggttaaccgaccactgatgctcttagagtgtgcatttttgaaccctagggcgttcccagaggagaggcattacaggtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACCGACCACTGATGCTCTTAGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt #### Ndufs8_ID194_2 --> 2 - 1 Original Alignment gaCATCTTAATGGACAAAGCCTT-CATAGCAGCGCAGTGGCGGCAACGTACa ctggggcccttgaggaacaggtcttccattttcctttatttttcttctaggaCATCTGAATGGACAGAGCCTGCCACAGCA-TGCTGTGGCATCAACATACagtaagtagctgaaattaagatccggctcatataacccttaggatgctgaa Alignment from CESAR gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACa ctggggcccttgaggaacaggtcttccattttcctttatttttcttctaggaCATCTGAATGGACAGAGCCTGCCACAGCATGCTGTGGCATCAACATACagtaagtagctgaaattaagatccggctcatataacccttaggatgctgaa Alignment from Spaln_aa2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctggggcccttgaggaacaggtcttccattttcctttatttttcttctagGACATCTGAATGGACAGAGCCTGCCACAGCATGCTGTGGCATCAACATACAgtaagtagctgaaattaagatccggctcatataacccttaggatgctgaa Alignment from Spaln_nt2Genome GACATCTTAATGGACAAAGCCTTC-ATAGCAGCGCAGTGGCGGCAACGTACA ctggggcccttgaggaacaggtcttccattttcctttatttttcttctagGACATCTGAATGGACAGAGCCTGCCACAGCA-TGCTGTGGCATCAACATACAgtaagtagctgaaattaagatccggctcatataacccttaggatgctgaa Alignment from Pairagon GACATCTTAATGGACAAAGCCTTCATAGCAGC--------GCAGTGGCGGCAACGTACA ctggggcccttgaggaacaggtcttccattttcctttatttttcttctagGACATCTGAATGGACAGAGCCT--------GCCACAGCATGCTGTGGCATCAACATACAgtaagtagctgaaattaagatccggctcatataacccttaggatgctgaa Alignment from Exonerate_protein2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctggggcccttgaggaacaggtcttccattttcctttatttttcttctagGACATCTGAATGGACAGAGCCTGCCACAGCATGCTGTGGCATCAACATACAgtaagtagctgaaattaagatccggctcatataacccttaggatgctgaa Alignment from Exonerate_coding2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctggggcccttgaggaacaggtcttccattttcctttatttttcttctagGACATCTGAATGGACAGAGCCTGCCACAGCATGCTGTGGCATCAACATACAgtaagtagctgaaattaagatccggctcatataacccttaggatgctgaa Alignment from GeneWise GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctggggcccttgaggaacaggtcttccattttcctttatttttcttctagGACATCTGAATGGACAGAGCCTGCCACAGCATGCTGTGGCATCAACATACAgtaagtagctgaaattaagatccggctcatataacccttaggatgctgaa #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTG-GGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctaggtGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCC---ACATTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGCGGAA-AGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctaggtGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGCGGAAAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGCGGAAAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCA---CATTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGCGGAAAGCTACAGTTA---TCATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCA---CATTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGCGGAAAGCTACAGTTA---TCATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGCGGAAAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGCGGAAAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGCGGAAAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTG-AAAGAGCTGATTGAGAAACATGCTg gacggtgtttgatcatgccttagttaatggcttgtgtcattactttgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACAATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCCAAAGAGCTGA-TGAGAAACATACTggtgtgtcttaagcgaactcaaggtcagggcatcagaggggtgcttgcaaa Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacggtgtttgatcatgccttagttaatggcttgtgtcattactttgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACAATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCCAAAGAGCTGATGAGAAACATACTggtgtgtcttaagcgaactcaaggtcagggcatcagaggggtgcttgcaaa Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgtttgatcatgccttagttaatggcttgtgtcattactttgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACAATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCCAAAGAGCTGATGAGAAACATACTGgtgtgtcttaagcgaactcaaggtcagggcatcagaggggtgcttgcaaa Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTG-AAAGAGCTGATTGAGAAACATGCTG gacggtgtttgatcatgccttagttaatggcttgtgtcattactttgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACAATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCCAAAGAGCTGA-TGAGAAACATACTGgtgtgtcttaagcgaactcaaggtcagggcatcagaggggtgcttgcaaa Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACT-GAAAGAGCTGATTGAGAAACATGCTG gacggtgtttgatcatgccttagttaatggcttgtgtcattactttgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACAATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCCAAAGAGCTGA-TGAGAAACATACTGgtgtgtcttaagcgaactcaaggtcagggcatcagaggggtgcttgcaaa Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgtttgatcatgccttagttaatggcttgtgtcattactttgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACAATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCCAAAGAGCTGATGAGAAACATACTGgtgtgtcttaagcgaactcaaggtcagggcatcagaggggtgcttgcaaa Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgtttgatcatgccttagttaatggcttgtgtcattactttgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACAATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCCAAAGAGCTGATGAGAAACATACTGgtgtgtcttaagcgaactcaaggtcagggcatcagaggggtgcttgcaaa Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgtttgatcatgccttagttaatggcttgtgtcattactttgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACAATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCCAAAGAGCTGATGAGAAACATACTGgtgtgtcttaagcgaactcaaggtcagggcatcagaggggtgcttgcaaa #### Ndufv1_ID280_2 --> 0 - 2 Original Alignment ACAGCACCCAAGAAAACCTCA-TTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGag g tgagctgactgctcctctcactactcaaccgctgccccatctccacacagACAGCACCCAAGAAAACCTCACTTTGGCT-GGTGAAGGATGATGACTGCATTTTTTCCAACCTCTGTGGGCGCCATGACTGGaggtgcgtcaaggttatgacctaggcaagttgttttacttttgattttcaga Alignment from CESAR ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGag g tgagctgactgctcctctcactactcaaccgctgccccatctccacacagACAGCACCCAAGAAAACCTCACTTTGGCTGGTGAAGGATGATGACTGCATTTTTTCCAACCTCTGTGGGCGCCATGACTGGaggtgcgtcaaggttatgacctaggcaagaaattatgtgttgacgtcacaga Alignment from Spaln_aa2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG G tgagctgactgctcctctcactactcaaccgctgccccatctccacacagACAGCACCCAAGAAAACCTCACTTTGGCTGGTGAAGGATGATGACTGCATTTTTTCCAACCTCTGTGGGCGCCATGACTGGAGgtgcgtcaaggttatgacctaggcaagttgttttacttttgattttcagA Alignment from Spaln_nt2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG G tgagctgactgctcctctcactactcaaccgctgccccatctccacacagACAGCACCCAAGAAAACCTCACTTTGGCTGGTGAAGGATGATGACTGCATTTTTTCCAACCTCTGTGGGCGCCATGACTGGAGgtgcgtcaaggttatgacctaggcaagttgttttacttttgattttcagA Alignment from Pairagon ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG G tgagctgactgctcctctcactactcaaccgctgccccatctccacacagACAGCACCCAAGAAAACCTCACTTTGGCTGGTGAAGGATGATGACTGCATTTTTTCCAACCTCTGTGGGCGCCATGACTGGAGgtgcgtcaaggttatgacctaggcaagttgttttacttttgattttcagA Alignment from Exonerate_protein2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG G tgagctgactgctcctctcactactcaaccgctgccccatctccacacagACAGCACCCAAGAAAACCTCACTTTGGCTGGTGAAGGATGATGACTGCATTTTTTCCAACCTCTGTGGGCGCCATGACTGGAGgtgcgtcaaggttatgacctaggcaagttgttttacttttgattttcagA Alignment from Exonerate_coding2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG G tgagctgactgctcctctcactactcaaccgctgccccatctccacacagACAGCACCCAAGAAAACCTCACTTTGGCTGGTGAAGGATGATGACTGCATTTTTTCCAACCTCTGTGGGCGCCATGACTGGAGgtgcgtcaaggttatgacctaggcaagttgttttacttttgattttcagA Alignment from GeneWise ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG G tgagctgactgctcctctcactactcaaccgctgccccatctccacacagACAGCACCCAAGAAAACCTCACTTTGGCTGGTGAAGGATGATGACTGCATTTTTTCCAACCTCTGTGGGCGCCATGACTGGAGgtgcgtcaaggttatgacctaggcaagttgttttacttttgattttcagA #### Nfkb2_ID9824_2 --> 0 - 1 Original Alignment GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCC-ATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg catcaattgatcccttaataccgctaccctaaatgtagaatttttcctagGGGCTAGAAGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACGCATAGTAGAAC-TAATGATCCAGCCCCTGAAACAggtgggtgaatataaggagaaactattgtgctgttgcacttcagttgaaga Alignment from CESAR GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg catcaattgatcccttaataccgctaccctaaatgtagaatttttcctagGGGCTAGAAGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACGCATAGTAGAACTAATGATCCAGCCCCTGAAACAggtgggtgaatataaggagaaactattgtgctgttgcacttcagttgaaga Alignment from Spaln_aa2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG catcaattgatcccttaataccgctaccctaaatgtagaatttttcctagGGGCTAGAAGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACGCATAGTAGAACTAATGATCCAGCCCCTGAAACAGgtgggtgaatataaggagaaactattgtgctgttgcacttcagttgaaga Alignment from Spaln_nt2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG catcaattgatcccttaataccgctaccctaaatgtagaatttttcctagGGGCTAGAAGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACGCATAGTAGAACTAATGATCCAGCCCCTGAAACAGgtgggtgaatataaggagaaactattgtgctgttgcacttcagttgaaga Alignment from Pairagon GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGC-----------CTAAGGATCCAGCCCCTGAGACAG catcaattgatcccttaataccgctaccctaaatgtagaatttttcctagGGGCTAGAAGGAATCCCAGATTATGAGGATTTTGAATTCAGCCC-----------AACGCATAGTAGAACTAATGATCCAGCCCCTGAAACAGgtgggtgaatataaggagaaactattgtgctgttgcacttcagttgaaga Alignment from Exonerate_protein2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG catcaattgatcccttaataccgctaccctaaatgtagaatttttcctagGGGCTAGAAGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACGCATAGTAGAACTAATGATCCAGCCCCTGAAACAGgtgggtgaatataaggagaaactattgtgctgttgcacttcagttgaaga Alignment from Exonerate_coding2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG catcaattgatcccttaataccgctaccctaaatgtagaatttttcctagGGGCTAGAAGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACGCATAGTAGAACTAATGATCCAGCCCCTGAAACAGgtgggtgaatataaggagaaactattgtgctgttgcacttcagttgaaga Alignment from GeneWise GACAATTGCTACGATCCAGGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG catcaattgatcccttaataccgctaccctaaatgtagaatttttcctag------------------GGGCTAGAAGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACGCATAGTAGAACTAATGATCCAGCCCCTGAAACAGgtgggtgaatataaggagaaactattgtgctgttgcacttcagttgaaga #### Nfkb2_ID9825_3 --> 2 - 0 Original Alignment ctGATGGCCCCTATCTGGTG-ATTGTGGAACAGCCCAAACAG ctgctagtaagaccaataaagaggggaaagatcatcttgtctgtccacagctGATGGCCCCTATCTTGTGCATTGTGG-ACAGACCAAACAGgtaagtgtacaataaaacaataaaaaaatgtgtgctttagagttaggtag Alignment from CESAR ctGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaagaccaataaagaggggaaagatcatcttgtctgtccacagctGATGGCCCCTATCTTGTGCATTGTGGACAGACCAAACAGgtaagtgtacaataaaacaataaaaaaatgtgtgctttagagttaggtag Alignment from Spaln_aa2Genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaagaccaataaagaggggaaagatcatcttgtctgtccacagCTGATGGCCCCTATCTTGTGCATTGTGGACAGACCAAACAGgtaagtgtacaataaaacaataaaaaaatgtgtgctttagagttaggtag Alignment from Spaln_nt2Genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaagaccaataaagaggggaaagatcatcttgtctgtccacagCTGATGGCCCCTATCTTGTGCATTGTGGACAGACCAAACAGgtaagtgtacaataaaacaataaaaaaatgtgtgctttagagttaggtag Alignment from Pairagon CTGATGGCCCCTATCTGGTG-ATTGTGGAACAGCCCAAACAG ctgctagtaagaccaataaagaggggaaagatcatcttgtctgtccacagCTGATGGCCCCTATCTTGTGCATTGTGG-ACAGACCAAACAGgtaagtgtacaataaaacaataaaaaaatgtgtgctttagagttaggtag Alignment from Exonerate_protein2genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaagaccaataaagaggggaaagatcatcttgtctgtccacagCTGATGGCCCCTATCTTGTGCATTGTGGACAGACCAAACAGgtaagtgtacaataaaacaataaaaaaatgtgtgctttagagttaggtag Alignment from Exonerate_coding2genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaagaccaataaagaggggaaagatcatcttgtctgtccacagCTGATGGCCCCTATCTTGTGCATTGTGGACAGACCAAACAGgtaagtgtacaataaaacaataaaaaaatgtgtgctttagagttaggtag Alignment from GeneWise CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaagaccaataaagaggggaaagatcatcttgtctgtccacagCTGATGGCCCCTATCTTGTGCATTGTGGACAGACCAAACAGgtaagtgtacaataaaacaataaaaaaatgtgtgctttagagttaggtag #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGC-TGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCCTGTG-GGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaagttt Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCCTGTGGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaaactc Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCCTGTGGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaagttt Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCCTGTGGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaagttt Alignment from Pairagon CGAGGCTTCAGATTTCGATATGG-CTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCCTGTG-GGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaagttt Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCCTGTGGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaagttt Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCCTGTGGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaagttt Alignment from GeneWise CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCCTGTGGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaagttt #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTG-GTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGCGCGACAC-CAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGCGCGACACCAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGCGCGACACCAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTG-GTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGCGCGACAC-CAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTG-GTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGCGCGACAC-CAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGCGCGACACCAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGCGCGACACCAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGCGCGACACCAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTG-GGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg ggggtgcctcagcacggatcatccagaacatggtaccactttccccacagaTTCAATAATTTGCGGC------CATGTAACAAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTAGCTggtgacacactggaaggtgtcttgggtggtgctcttaaataggctgtaaaa Alignment from CESAR aTTTAATAATCTG-GGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg ggggtgcctcagcacggatcatccagaacatggtaccactttccccacagaTTCAATAATTTGCGGC------CATGTAACAAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTAGCTggtgacacactggaaggtgtcttgggtggtgctcttaaataggctgtaaaa Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG ggggtgcctcagcacggatcatccagaacatggtaccactttccccacagATTCAATAATTTGCGGC-----CATGTAACAAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTAGCTGgtgacacactggaaggtgtcttgggtggtgctcttaaataggctgtaaaa Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG ggggtgcctcagcacggatcatccagaacatggtaccactttccccacagATTCAATAATTTG-----CGGCCATGTAACAAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTAGCTGgtgacacactggaaggtgtcttgggtggtgctcttaaataggctgtaaaa Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCC-------------------------------------------------------- ggggtgcctcagcacggatcatccagaacatggtaccactttccccacagATTCAATAATTTG-----CGGCCATGTAACAAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTAGCTGGTGACACACTGGAAGGTGTCTTGGGTGGTGCTCTTAAATAGGCTGTAAAA Alignment from Exonerate_protein2genome ATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG ggggtgcctcagcacggatcatccagaacatggtaccactttccccacagATTCAATAATTTGCGGCCATGTAACAAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTAGCTGgtgacacactggaaggtgtcttgggtggtgctcttaaataggctgtaaaa Alignment from Exonerate_coding2genome ATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG ggggtgcctcagcacggatcatccagaacatggtaccactttccccacagATTCAATAATTTGCGGCCATGTAACAAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTAGCTGgtgacacactggaaggtgtcttgggtggtgctcttaaataggctgtaaaa Alignment from GeneWise ATTTAATAAT-CTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG ggggtgcctcagcacggatcatccagaacatggtaccactttccccacagATTCAATAATTTGCGGC------CATGTAACAAAGAAAAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTAGCTGgtgacacactggaaggtgtcttgggtggtgctcttaaataggctgtaaaa #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGG-TTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagatGACATCGAGGTTCAACTTCT-TGAGGATGATGAGAATGGGTGGCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagatGACATCGAGGTTCAACTTCTTGAGGATGATGAGAATGGGTGGCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAACTTCTTGAGGATGATGAGAATGGGTGGCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAACTTCTTGAGGATGATGAGAATGGGTGGCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAACTTCTTGAGGATGATGAGAATGGGTGGCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAACTTCTTGAGGATGATGAGAATGGGTGGCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAACTTCTTGAGGATGATGAGAATGGGTGGCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAACTTCTTGAGGATGATGAGAATGGGTGGCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCG-CCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAg catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCCTATCACA-GATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGggtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAg catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCCTATCACAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGggtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCCTATCACAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTA---CCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCCTATCACAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Pairagon TATGCCATTGTGTTCCGGACACCG-CCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCCTATCAC-AGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCCTATCACAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCCTATCACAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCCTATCACAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAAC-ACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATCACGC-ACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATCACGCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATCACGCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATCACGCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATCACGCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATCACGCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATCACGCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATCACGCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCG-CTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtaggcGCTGATACCCATACAGAGAATGAAGAGCCACTGTGTCCTCCTGCCATCCC-CTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtaggcGCTGATACCCATACAGAGAATGAAGAGCCACTGTGTCCTCCTGCCATCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACAGAGAATGAAGAGCCACTGTGTCCTCCTGCCATCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGC-TGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACAGAGAATGAAGAGCCACTGTGTCCTCCTGCCATC-CCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGGTG----------------------------------------------- cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACAGAGAATGAAGAGCCACTGTGTCCTCCTGCCATCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGGTGAGTTACGCAGAGTCTGCTACTGTTCAGAAAGTATCCAAGTGGGTGTA Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACAGAGAATGAAGAGCCACTGTGTCCTCCTGCCATCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACAGAGAATGAAGAGCCACTGTGTCCTCCTGCCATCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from GeneWise --GGTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagTAGGCGCTGATACCCATACAGAGAATGAAGAGCCACTGTGTCCTCCTGCCATCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTG---AAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTACAACGCTGCTC-GAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAggtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from CESAR GTGAAG---ACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTACAACGCTGCTCGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAggtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Spaln_aa2Genome GTG---AAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTACAACGCTGCTCGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Spaln_nt2Genome GTGAAGA---CTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTACAACGCTGCTC-GAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Pairagon GT---GAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTACAACGCTGCTC-GAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Exonerate_protein2genome GTG---AAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTACAACGCTGCTCGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Exonerate_coding2genome tgatagtgacacatacttcccctttaggcctccatctgccatccccacaggtaaaaaaaaccctactgctacaacgctgctcgaattccacagagccacccttggccccaccgaccccagtaggtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from GeneWise GTGAAG---ACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTACAACGCTGCTCGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTC-AGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCCAGGCTTC-GAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAggtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from CESAR CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCCAGGCTTCGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAggtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Spaln_aa2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCCAGGCTTCGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Spaln_nt2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCCAGGCTTCGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Pairagon -----------------------------------------------------GCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGT-CAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG GTCAGTTAGACTGCTGAGGCCTCAACCATGGGCTGCTTCTCATCCCACAGTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCCAGGCTTC-GAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Exonerate_protein2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCCAGGCTTCGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Exonerate_coding2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCCAGGCTTCGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from GeneWise CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCCAGGCTTCGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag #### Nmrk1_ID4439_5 --> 1 - 2 Original Alignment gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTT-CCATATGAAGAATGTAAGAGGAGAAGGag gggaaatgggagaaacactattttgtaaatcgggccgggcctctccacagaCTTTTGGATACAATATGGAATAGGAGTTACTGCCTAACTGTTCCAATATG-CCAATGCAAGAGGGGAAGGaggtaattttggagactgactgtggattgtaagcaggattatgacccttaag Alignment from CESAR gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag gggaaatgggagaaacactattttgtaaatcgggccgggcctctccacagaCTTTTGGATACAATATGGAATAGGAGTTACTGCCTAACTGTTCCAATATGCCAATGCAAGAGGGGAAGGaggtaattttggagactgactgtggattgtaagcaggattatgacccttaag Alignment from Spaln_aa2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggaaatgggagaaacactattttgtaaatcgggccgggcctctccacagACTTTTGGATACAATATGGAATAGGAGTTACTGCCTAACTGTTCCAATATGCCAATGCAAGAGGGGAAGGAGgtaattttggagactgactgtggattgtaagcaggattatgacccttaag Alignment from Spaln_nt2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggaaatgggagaaacactattttgtaaatcgggccgggcctctccacagACTTTTGGATACAATATGGAATAGGAGTTACTGCCTAACTGTTCCAATATGCCAATGCAAGAGGGGAAGGAGgtaattttggagactgactgtggattgtaagcaggattatgacccttaag Alignment from Pairagon GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCC-ATATGAAGAATGTAAGAGGAGAAGGAG gggaaatgggagaaacactattttgtaaatcgggccgggcctctccacagACTTTTGGATACAATATGGAATAGGAGTTACTGCCTAACTGTTCCAATATGCC-AATGCAAGAGGGGAAGGAGgtaattttggagactgactgtggattgtaagcaggattatgacccttaag Alignment from Exonerate_protein2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggaaatgggagaaacactattttgtaaatcgggccgggcctctccacagACTTTTGGATACAATATGGAATAGGAGTTACTGCCTAACTGTTCCAATATGCCAATGCAAGAGGGGAAGGAGgtaattttggagactgactgtggattgtaagcaggattatgacccttaag Alignment from Exonerate_coding2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggaaatgggagaaacactattttgtaaatcgggccgggcctctccacagACTTTTGGATACAATATGGAATAGGAGTTACTGCCTAACTGTTCCAATATGCCAATGCAAGAGGGGAAGGAGgtaattttggagactgactgtggattgtaagcaggattatgacccttaag Alignment from GeneWise GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggaaatgggagaaacactattttgtaaatcgggccgggcctctccacagACTTTTGGATACAATATGGAATAGGAGTTACTGCCTAACTGTTCCAATATGCCAATGCAAGAGGGGAAGGAGgtaattttggagactgactgtggattgtaagcaggattatgacccttaag #### Noc3l_ID7658_17 --> 2 - 0 Original Alignment gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATT-GGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacaggcACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTCGGGC-TTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from CESAR gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacaggcACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTCGGGCTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Spaln_aa2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTCGGGCTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Spaln_nt2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTCGGGCTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Pairagon GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTCGGGCTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Exonerate_protein2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTCGGGCTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Exonerate_coding2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTCGGGCTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from GeneWise GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTCGGGCTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTT-CAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCCAAACTG-TTTTCATGTTCTTTCTGGACCAggtatgaagtccatttggtctccctttcatttcactaaattaacgttggcc Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCCAAACTGTTTTCATGTTCTTTCTGGACCAggtatgaagtccatttggtctccctttcatttcactaaatcgtgtgttctc Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCCAAACTGTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaattaacgttggcc Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCCAAACTGTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaattaacgttggcc Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCCAAACTGTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaattaacgttggcc Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCCAAACTGTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaattaacgttggcc Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCCAAACTGTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaattaacgttggcc Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA--------------------------------------------------- gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCCAAACTGTTTTCATGTTCTTTCTGGACCAGGTATGAAGTCCATTTGGTCTCCCTTTCATTTCACTAAATTAACGTTGGCC #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGAT-GACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtccagggtgtacctaggaggtatagacgtccgtgtctccctaggtTGTGAGCTCTCTGATCACACACGCTCGTTCACTTTCAATGTTGCAGAGGAAGATCGACA-AGAGCAGGTGCTGGCATTGAACATGgtgagtgctacataaggagtgaggtcaggcacacccctggtcttatcttt Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtccagggtgtacctaggaggtatagacgtccgtgtctccctaggtTGTGAGCTCTCTGATCACACACGCTCGTTCACTTTCAATGTTGCAGAGGAAGATCGACAAGAGCAGGTGCTGGCATTGAACATGgtgagtgctacataaggagtgaggtcaggcacacccctggtcttatcttt Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtccagggtgtacctaggaggtatagacgtccgtgtctccctagGTTGTGAGCTCTCTGATCACACACGCTCGTTCACTTTCAATGTTGCAGAGGAAGATCGACAAGAGCAGGTGCTGGCATTGAACATGgtgagtgctacataaggagtgaggtcaggcacacccctggtcttatcttt Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtccagggtgtacctaggaggtatagacgtccgtgtctccctagGTTGTGAGCTCTCTGATCACACACGCTCGTTCACTTTCAATGTTGCAGAGGAAGATCGACAAGAGCAGGTGCTGGCATTGAACATGgtgagtgctacataaggagtgaggtcaggcacacccctggtcttatcttt Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGAT-GACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtccagggtgtacctaggaggtatagacgtccgtgtctccctagGTTGTGAGCTCTCTGATCACACACGCTCGTTCACTTTCAATGTTGCAGAGGAAGATCGACA-AGAGCAGGTGCTGGCATTGAACATGgtgagtgctacataaggagtgaggtcaggcacacccctggtcttatcttt Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtccagggtgtacctaggaggtatagacgtccgtgtctccctagGTTGTGAGCTCTCTGATCACACACGCTCGTTCACTTTCAATGTTGCAGAGGAAGATCGACAAGAGCAGGTGCTGGCATTGAACATGgtgagtgctacataaggagtgaggtcaggcacacccctggtcttatcttt Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtccagggtgtacctaggaggtatagacgtccgtgtctccctagGTTGTGAGCTCTCTGATCACACACGCTCGTTCACTTTCAATGTTGCAGAGGAAGATCGACAAGAGCAGGTGCTGGCATTGAACATGgtgagtgctacataaggagtgaggtcaggcacacccctggtcttatcttt Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtccagggtgtacctaggaggtatagacgtccgtgtctccctagGTTGTGAGCTCTCTGATCACACACGCTCGTTCACTTTCAATGTTGCAGAGGAAGATCGACAAGAGCAGGTGCTGGCATTGAACATGgtgagtgctacataaggagtgaggtcaggcacacccctggtcttatcttt #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGC-TCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCCTCCCAGC-GACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Exonerate_coding2genome GTAGCAATGAGCGCCCGGACATT---AGTTCCATCCAGAGACGGATTAAGAAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG GTATTGCCAAAGGATTAGATATAGTTGCGTCTGCTGTTGTCCTCTTTCAGGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCCTCCCAGCGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta #### Nt5c2_ID10037_16 --> 1 - 0 Original Alignment gCACCTGGACAGCAGTAGCAATGAGCGCCCG-GACATTAGTTCCATCCAGAGACGGATTAAG tccaaccaggggcgctttctcttagacccatgcaatgtttcttttggaaggCATTTGGACAGCAGTAGC------------CAATA-TAGTCCTATCCAAAGGCAGATTAAGgtaactagattgcatctgggagacaacattaggtgttagtattgccaaag Alignment from CESAR gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccaggggcgctttctcttagacccatgcaatgtttcttttggaaggCATTTGGACAGCAGTAGCCAA------------TATAGTCCTATCCAAAGGCAGATTAAGgtaactagattgcatctgggagacaacattaggtgttagtattgccaaag Alignment from Spaln_aa2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccaggggcgctttctcttagacccatgcaatgtttcttttggaagGCATTTGGACAGCAGTAGC------------CAATATAGTCCTATCCAAAGGCAGATTAAGgtaactagattgcatctgggagacaacattaggtgttagtattgccaaag Alignment from Spaln_nt2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccaggggcgctttctcttagacccatgcaatgtttcttttggaagGCATTTGGACAGCAGTAGCCAATA------------TAGTCCTATCCAAAGGCAGATTAAGgtaactagattgcatctgggagacaacattaggtgttagtattgccaaag Alignment from Pairagon GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccaggggcgctttctcttagacccatgcaatgtttcttttggaagGCATTTGGACAGCAGTAGCCAATA------------TAGTCCTATCCAAAGGCAGATTAAGgtaactagattgcatctgggagacaacattaggtgttagtattgccaaag Alignment from Exonerate_protein2genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccaggggcgctttctcttagacccatgcaatgtttcttttggaagGCATTTGGACAGCAGTAGCCAATATAGTCCT------------ATCCAAAGGCAGATTAAGgtaactagattgcatctgggagacaacattaggtgttagtattgccaaag Alignment from Exonerate_coding2genome GCACCTGGACAGCAGTAGCAATGAGC tccaaccaggggcgctttctcttagacccatgcaatgtttcttttggaaggcatttggacagcagtagccaatatagtcctatccaaaggcagattaaggtaactagattgcatctgggagacAACATTAGGTGTTAGTATTGCCAAAG Alignment from GeneWise -------AAGC tccaaccaggggcgctttctcttagacccatgcaatgtttcttttggaaggcatttggacagcagtagccaatatagtcctatccaaaggcagattaaggtaactagattgcatctgggagacaacattaggtgttagTATTGCCAAAG #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTGAAAATTGGC-ACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgagtaccagactaatgagaaagctgaaaattttattttccatttggcagAAAACTGGAAAACTGAAGAATGGCCTCCTACA-AGGCCCTTTGCAGCAT---GTTGTATATTCTGGGggtaaggatgccatcagcctatgagggttattttcatgagaagtactcttt Alignment from CESAR AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgagtaccagactaatgagaaagctgaaaattttattttccatttggcagAAAACTGGAAAACTGAAGAATGGCCTCCTACAAGGCCCTTTGCAGCAT---GTTGTATATTCTGGGggtaaggatgccatcagcctatgagggttattttcatgagaagtactcttt Alignment from Spaln_aa2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagactaatgagaaagctgaaaattttattttccatttggcagAAAACTGGAAAACTGAAGAATGGCCTCCTACAAGGCCCTTTGCAGCAT---GTTGTATATTCTGGGGgtaaggatgccatcagcctatgagggttattttcatgagaagtactcttt Alignment from Spaln_nt2Genome AAAACTGGAAAACTGAAAATTGGCA-CCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagactaatgagaaagctgaaaattttattttccatttggcagAAAACTGGAAAACTGAAGAATGGCCTCCTACA-AGGCCCTTTGCAGCATG---TTGTATATTCTGGGGgtaaggatgccatcagcctatgagggttattttcatgagaagtactcttt Alignment from Pairagon AAAACTGGAAAACTGAAAATTGGCA-CCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagactaatgagaaagctgaaaattttattttccatttggcagAAAACTGGAAAACTGAAGAATGGCCTCCTACA-AGGCCCTTTGCAGCATG---TTGTATATTCTGGGGgtaaggatgccatcagcctatgagggttattttcatgagaagtactcttt Alignment from Exonerate_protein2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagactaatgagaaagctgaaaattttattttccatttggcagAAAACTGGAAAACTGAAGAATGGCCTCCTACAAGGCCCTTTGCAGCAT---GTTGTATATTCTGGGGgtaaggatgccatcagcctatgagggttattttcatgagaagtactcttt Alignment from Exonerate_coding2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagactaatgagaaagctgaaaattttattttccatttggcagAAAACTGGAAAACTGAAGAATGGCCTCCTACAAGGCCCTTTGCAGCAT---GTTGTATATTCTGGGGgtaaggatgccatcagcctatgagggttattttcatgagaagtactcttt Alignment from GeneWise AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagactaatgagaaagctgaaaattttattttccatttggcagAAAACTGGAAAACTGAAGAATGGCCTCCTACAAGGCCCTTTGCAGCAT---GTTGTATATTCTGGGGgtaaggatgccatcagcctatgagggttattttcatgagaagtactcttt #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAG-GCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gactacgaggattcagcactatcctgggactccctatgcataccccacaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGCGCCCACG-GTCTACAGGAATCATCTTTGTGGAAACGCAGgtaaaagaatttagctccagttggctgctagcacattcagggttattaac Alignment from CESAR gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gactacgaggattcagcactatcctgggactccctatgcataccccacaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGCGCCCACGGTCTACAGGAATCATCTTTGTGGAAACGCAGgtaaaagaatttagctccagttggctgctagcacattcagggttattaac Alignment from Spaln_aa2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gactacgaggattcagcactatcctgggactccctatgcataccccacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGCGCCCACGGTCTACAGGAATCATCTTTGTGGAAACGCAGgtaaaagaatttagctccagttggctgctagcacattcagggttattaac Alignment from Spaln_nt2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gactacgaggattcagcactatcctgggactccctatgcataccccacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGCGCCCACGGTCTACAGGAATCATCTTTGTGGAAACGCAGgtaaaagaatttagctccagttggctgctagcacattcagggttattaac Alignment from Pairagon GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAG-GCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gactacgaggattcagcactatcctgggactccctatgcataccccacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGCGCCCACG-GTCTACAGGAATCATCTTTGTGGAAACGCAGgtaaaagaatttagctccagttggctgctagcacattcagggttattaac Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gactacgaggattcagcactatcctgggactccctatgcataccccacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGCGCCCACGGTCTACAGGAATCATCTTTGTGGAAACGCAGgtaaaagaatttagctccagttggctgctagcacattcagggttattaac Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gactacgaggattcagcactatcctgggactccctatgcataccccacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGCGCCCACGGTCTACAGGAATCATCTTTGTGGAAACGCAGgtaaaagaatttagctccagttggctgctagcacattcagggttattaac Alignment from GeneWise GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gactacgaggattcagcactatcctgggactccctatgcataccccacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGCGCCCACGGTCTACAGGAATCATCTTTGTGGAAACGCAGgtaaaagaatttagctccagttggctgctagcacattcagggttattaac #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTG-GGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgccacttcatgcttcttgctttagGACAAGGCAATCTTAGTCCCTGTTCTTGCTAATGTGCGGCCCAT-GGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaggtggtgcacttttaggacaggggaacttaagagtggatgcatggcc Alignment from CESAR GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgccacttcatgcttcttgctttagGACAAGGCAATCTTAGTCCCTGTTCTTGCTAATGTGCGGCCCATGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaggtggtgcacttttaggacaggggaacttaagagtggatgcatggcc Alignment from Spaln_aa2Genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgccacttcatgcttcttgctttagGACAAGGCAATCTTAGTCCCTGTTCTTGCTAATGTGCGGCCCATGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaggtggtgcacttttaggacaggggaacttaagagtggatgcatggcc Alignment from Spaln_nt2Genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgccacttcatgcttcttgctttagGACAAGGCAATCTTAGTCCCTGTTCTTGCTAATGTGCGGCCCATGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaggtggtgcacttttaggacaggggaacttaagagtggatgcatggcc Alignment from Pairagon GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgccacttcatgcttcttgctttagGACAAGGCAATCTTAGTCCCTGTTCTTGCTAATGTGCGGCCCATGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaggtggtgcacttttaggacaggggaacttaagagtggatgcatggcc Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgccacttcatgcttcttgctttagGACAAGGCAATCTTAGTCCCTGTTCTTGCTAATGTGCGGCCCATGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaggtggtgcacttttaggacaggggaacttaagagtggatgcatggcc Alignment from Exonerate_coding2genome AAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgccacttcatgcttcttgctttaggACAAGGCAATCTTAGTCCCTGTTCTTGCTAATGTGCGGCCCATGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaggtggtgcacttttaggacaggggaacttaagagtggatgcatggcc Alignment from GeneWise GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgccacttcatgcttcttgctttagGACAAGGCAATCTTAGTCCCTGTTCTTGCTAATGTGCGGCCCATGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaggtggtgcacttttaggacaggggaacttaagagtggatgcatggcc #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAA-CTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgttccttgtcttccattcctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACCTAA-GGCTGAACAAATAGAGCAGCTCAAGgtaagtcgcataagtctagttacactaagggcaacccctgaactcacgtc Alignment from CESAR ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgttccttgtcttccattcctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACCTAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtcgcataagtctagttacactaagggcaacccctgaactcacgtc Alignment from Spaln_aa2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgttccttgtcttccattcctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACCTAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtcgcataagtctagttacactaagggcaacccctgaactcacgtc Alignment from Spaln_nt2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgttccttgtcttccattcctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACCTAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtcgcataagtctagttacactaagggcaacccctgaactcacgtc Alignment from Pairagon ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgttccttgtcttccattcctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACCTAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtcgcataagtctagttacactaagggcaacccctgaactcacgtc Alignment from Exonerate_protein2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgttccttgtcttccattcctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACCTAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtcgcataagtctagttacactaagggcaacccctgaactcacgtc Alignment from Exonerate_coding2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgttccttgtcttccattcctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACCTAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtcgcataagtctagttacactaagggcaacccctgaactcacgtc Alignment from GeneWise ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgttccttgtcttccattcctgcagATATCAATCATAATTAATACATCTGCTCCAGCCTACACTGTGCAGAACGAACCTAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtcgcataagtctagttacactaagggcaacccctgaactcacgtc #### Nxf1_ID2347_7 --> 0 - 1 Original Alignment CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTC-AAGGGGCTCCGCTCAGACCCAg ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTCAAGGAGC-TCGCTCAGACCCAggtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from CESAR CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTCAAGGAGCTCGCTCAGACCCAggtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Spaln_aa2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTCAAGGAGCTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Spaln_nt2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCT-CAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTCAAGGAGCT-CGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Pairagon CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACC-TCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTCAAGGAGCT-CGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Exonerate_protein2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTCAAGGAGCTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Exonerate_coding2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTCAAGGAGCTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from GeneWise CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTCAAGGAGCTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACC-CTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccag---TTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTCTTAAATC-TTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from CESAR CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccag---TTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTCTTAAATCTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccag---TTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTCTTAAATCTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Spaln_nt2Genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCT-AAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccagTTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTCTTAAATCT-TCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Pairagon CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccag---TTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTCTTAAATCTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Exonerate_protein2genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccagTTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTCTTAAATCTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Exonerate_coding2genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccagTTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTCTTAAATCTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from GeneWise ---TCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccagTTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTCTTAAATCTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGAT-GGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaatttgtttatacatatctaagggtttgttttgttttttcctctaggTACTTTGTCATTTGTGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATCGGTGCTTGTT-CTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCaggtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from CESAR gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaatttgtttatacatatctaagggtttgttttgttttttcctctaggTACTTTGTCATTTGTGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATCGGTGCTTGTTCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCaggtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATCGGTGCTTGTTCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Spaln_nt2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATCGGTGCTTGTTCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Pairagon GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGAT-GGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATCGGTGCTTGTT-CTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATCGGTGCTTGTTCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Exonerate_coding2genome ---TTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCAGTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG TAACAATTTGTTTATACATATCTAAGGGTTTGTTTTGTTTTTTCCTCTAGGTACTTTGTCATTTGTGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATCGGTGCTTGTTCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from GeneWise GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATCGGTGCTTGTTCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac #### Nxf1_ID2355_15 --> 1 - 1 Original Alignment aAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTG-AAGAAGCTTAAAGAACCCa accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagaAAAAACCTAGCGGAATATGTTAAAGACTGTAGAAATGTACAAGA-GCTTAAGGAACCCagtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from CESAR aAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagaAAAAACCTAGCGGAATATGTTAAAGACTGTAGAAATGTACAAGAGCTTAAGGAACCCagtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Spaln_aa2Genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTAAAGACTGTAGAAATGTACAAGAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Spaln_nt2Genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTAAAGACTGTAGAAATGTACAAGAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Pairagon AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTAAAGACTGTAGAAATGTACAAGAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Exonerate_protein2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTAAAGACTGTAGAAATGTACAAGAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Exonerate_coding2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTAAAGACTGTAGAAATGTACAAGAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from GeneWise AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTAAAGACTGTAGAAATGTACAAGAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGAC-GAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATCGAAA-TGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACaagtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATCGAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACaagtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATCGAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATCGAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATCGAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATCGAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATCGAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATCGAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag #### Osbp_ID3347_6 --> 1 - 0 Original Alignment aCGTACTGGCAGCAAT-ATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagaCGTACTGGCAGCAATCATCAGTG-GCCCAGCAGTGATGTCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from CESAR aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagaCGTACTGGCAGCAATCATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Spaln_aa2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATCATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Spaln_nt2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATCATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Pairagon ACGTACTGGCAGCAAT-ATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATCATCAGT-GGCCCAGCAGTGATGTCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Exonerate_protein2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATCATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Exonerate_coding2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATCATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from GeneWise ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATCATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt #### Otub1_ID2061_5 --> 1 - 0 Original Alignment gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATT-GAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacaggTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTCGAAG-CTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from CESAR gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacaggTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTCGAAGCTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Spaln_aa2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTCGAAGCTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Spaln_nt2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTCGAAGCTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Pairagon GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTCGAAGCTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Exonerate_protein2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTCGAAGCTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Exonerate_coding2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTCGAAGCTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from GeneWise GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTCGAAGCTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAG-CTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt ttaagggtctagtggaatataattcttatgtgatcttcgtgtttccccagaaCCACTAGATGTGGTGGGTCGTGTGATGCTGTATATCAATGGTGCTATAACAACACACCAGCCTTCCCA-TGCTGAAGCTATGCTGACCTGCAGACATAAGttgtgagtccaatatcaggaccttcaggaaatcagcttggactaatggatga Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt ttaagggtctagtggaatataattcttatgtgatcttcgtgtttccccagaaCCACTAGATGTGGTGGGTCGTGTGATGCTGTATATCAATGGTGCTATAACAACACACCAGCCTTCCCATGCTGAAGCTATGCTGACCTGCAGACATAAGttgtgagtccaatatcaggaccttcaggaaatcagcttggactaatggatga Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttaagggtctagtggaatataattcttatgtgatcttcgtgtttccccagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATATCAATGGTGCTATAACAACACACCAGCCTTCCCATGCTGAAGCTATGCTGACCTGCAGACATAAGTTgtgagtccaatatcaggaccttcaggaaatcagcttggactaatggatga Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttaagggtctagtggaatataattcttatgtgatcttcgtgtttccccagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATATCAATGGTGCTATAACAACACACCAGCCTTCCCATGCTGAAGCTATGCTGACCTGCAGACATAAGTTgtgagtccaatatcaggaccttcaggaaatcagcttggactaatggatga Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttaagggtctagtggaatataattcttatgtgatcttcgtgtttccccagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATATCAATGGTGCTATAACAACACACCAGCCTTCCCATGCTGAAGCTATGCTGACCTGCAGACATAAGTTgtgagtccaatatcaggaccttcaggaaatcagcttggactaatggatga Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttaagggtctagtggaatataattcttatgtgatcttcgtgtttccccagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATATCAATGGTGCTATAACAACACACCAGCCTTCCCATGCTGAAGCTATGCTGACCTGCAGACATAAGTTgtgagtccaatatcaggaccttcaggaaatcagcttggactaatggatga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttaagggtctagtggaatataattcttatgtgatcttcgtgtttccccagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATATCAATGGTGCTATAACAACACACCAGCCTTCCCATGCTGAAGCTATGCTGACCTGCAGACATAAGTTgtgagtccaatatcaggaccttcaggaaatcagcttggactaatggatga #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGAT-TCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgtttggaacaagtacttcatccttagccgggactcttatctttcaggcTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCCTGCATGGA-AGATCTATTCAGCCAGTCAGAGCCCTTAGTGTCAggtgagaaccctcagtaggagtttgctacctttggtactatctcccatcac Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgtttggaacaagtacttcatccttagccgggactcttatctttcaggcTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCCTGCATGGAAGATCTATTCAGCCAGTCAGAGCCCTTAGTGTCAggtgagaaccctcagtaggagtttgctacctttggtactatctcccatcac Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgtttggaacaagtacttcatccttagccgggactcttatctttcagGCTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCCTGCATGGAAGATCTATTCAGCCAGTCAGAGCCCTTAGTGTCAGgtgagaaccctcagtaggagtttgctacctttggtactatctcccatcac Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTC-TGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgtttggaacaagtacttcatccttagccgggactcttatctttcagGCTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCCTGCATGGA-AGATCTATTCAGCCAGTCAGAGCCCTTAGTGTCAGgtgagaaccctcagtaggagtttgctacctttggtactatctcccatcac Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGAT-TCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgtttggaacaagtacttcatccttagccgggactcttatctttcagGCTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCCTGCATGGA-AGATCTATTCAGCCAGTCAGAGCCCTTAGTGTCAGgtgagaaccctcagtaggagtttgctacctttggtactatctcccatcac Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgtttggaacaagtacttcatccttagccgggactcttatctttcagGCTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCCTGCATGGAAGATCTATTCAGCCAGTCAGAGCCCTTAGTGTCAGgtgagaaccctcagtaggagtttgctacctttggtactatctcccatcac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgtttggaacaagtacttcatccttagccgggactcttatctttcagGCTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCCTGCATGGAAGATCTATTCAGCCAGTCAGAGCCCTTAGTGTCAGgtgagaaccctcagtaggagtttgctacctttggtactatctcccatcac #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGC-TCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg tcacccaaaatatcaccctttcccacccactcctgcctcttccaccttagtTGCAACTGCAACTCATCTATGCCAAGGCCGGTTAAAGTAGCAGCTGTGGGTAGCCAAAGTTACCTTAGTCTCCATCC-TCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACCCCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAggtattgtcttaccaggagttgttgagtaacatcttttaggatgaagctca Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg tcacccaaaatatcaccctttcccacccactcctgcctcttccaccttagtTGCAACTGCAACTCATCTATGCCAAGGCCGGTTAAAGTAGCAGCTGTGGGTAGCCAAAGTTACCTTAGTCTCCATCCTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACCCCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAggtattgtcttaccaggagttgttgagtaacatcttttaggatgaagctca Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcacccaaaatatcaccctttcccacccactcctgcctcttccaccttagTTGCAACTGCAACTCATCTATGCCAAGGCCGGTTAAAGTAGCAGCTGTGGGTAGCCAAAGTTACCTTAGTCTCCATCCTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACCCCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtattgtcttaccaggagttgttgagtaacatcttttaggatgaagctca Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcacccaaaatatcaccctttcccacccactcctgcctcttccaccttagTTGCAACTGCAACTCATCTATGCCAAGGCCGGTTAAAGTAGCAGCTGTGGGTAGCCAAAGTTACCTTAGTCTCCATCCTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACCCCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtattgtcttaccaggagttgttgagtaacatcttttaggatgaagctca Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAG-CTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcacccaaaatatcaccctttcccacccactcctgcctcttccaccttagTTGCAACTGCAACTCATCTATGCCAAGGCCGGTTAAAGTAGCAGCTGTGGGTAGCCAAAGTTACCTTAGTCTCCATCCT-CGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACCCCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtattgtcttaccaggagttgttgagtaacatcttttaggatgaagctca Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcacccaaaatatcaccctttcccacccactcctgcctcttccaccttagTTGCAACTGCAACTCATCTATGCCAAGGCCGGTTAAAGTAGCAGCTGTGGGTAGCCAAAGTTACCTTAGTCTCCATCCTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACCCCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtattgtcttaccaggagttgttgagtaacatcttttaggatgaagctca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcacccaaaatatcaccctttcccacccactcctgcctcttccaccttagTTGCAACTGCAACTCATCTATGCCAAGGCCGGTTAAAGTAGCAGCTGTGGGTAGCCAAAGTTACCTTAGTCTCCATCCTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACCCCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtattgtcttaccaggagttgttgagtaacatcttttaggatgaagctca #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAA-GAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ctggatattgtgaaactctcattgcagtgaccctgtctttccttgcatagacCGCTCCCCAGACATTGACAATTATTCAGAACGAGGAGG-AGAAAGCTTCTCCTCAGCGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgaggatctgacagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ctggatattgtgaaactctcattgcagtgaccctgtctttccttgcatagacCGCTCCCCAGACATTGACAATTATTCAGAACGAGGAGGAGAAAGCTTCTCCTCAGCGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgaggatctgacagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ctggatattgtgaaactctcattgcagtgaccctgtctttccttgcatagACCGCTCCCCAGACATTGACAATTATTCAGAACGAGGAGGAGAAAGCTTCTCCTCAGCGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgaggatctgacagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ctggatattgtgaaactctcattgcagtgaccctgtctttccttgcatagACCGCTCCCCAGACATTGACAATTATTCAGAACGAGGAGGAGAAAGCTTCTCCTCAGCGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgaggatctgacagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ctggatattgtgaaactctcattgcagtgaccctgtctttccttgcatagACCGCTCCCCAGACATTGACAATTATTCAGAACGAGGAGGAGAAAGCTTCTCCTCAGCGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgaggatctgacagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ctggatattgtgaaactctcattgcagtgaccctgtctttccttgcatagACCGCTCCCCAGACATTGACAATTATTCAGAACGAGGAGGAGAAAGCTTCTCCTCAGCGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgaggatctgacagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ctggatattgtgaaactctcattgcagtgaccctgtctttccttgcatagACCGCTCCCCAGACATTGACAATTATTCAGAACGAGGAGGAGAAAGCTTCTCCTCAGCGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgaggatctgacagtgtacaagttgaaacagggtgaggcaccacctcac #### Patl1_ID3332_17 --> 0 - 2 Original Alignment TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATA-GAATCAACGCAAAATAACCAGtg cacccctgaccaccctgactgttagctgtgggtctgtgtgcccaccacagTTTGGGTTGTCACTGCTCCTAATCCTATTGAGCCGAGGAGAAGACCTGCAGAGCTCAGATCCAGCTATACGAAC-TATGCAAAATAACCAGtggtgagtatagtagcaggctatgtgaatcaactctgtcgccttccatgtca Alignment from CESAR TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGtg cacccctgaccaccctgactgttagctgtgggtctgtgtgcccaccacagTTTGGGTTGTCACTGCTCCTAATCCTATTGAGCCGAGGAGAAGACCTGCAGAGCTCAGATCCAGCTATACGAACTATGCAAAATAACCAGtggtgagtatagtagcaggctatgtgaatcaactctgtcgccttccatgtca Alignment from Spaln_aa2Genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG cacccctgaccaccctgactgttagctgtgggtctgtgtgcccaccacagTTTGGGTTGTCACTGCTCCTAATCCTATTGAGCCGAGGAGAAGACCTGCAGAGCTCAGATCCAGCTATACGAACTATGCAAAATAACCAGTGgtgagtatagtagcaggctatgtgaatcaactctgtcgccttccatgtca Alignment from Spaln_nt2Genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG cacccctgaccaccctgactgttagctgtgggtctgtgtgcccaccacagTTTGGGTTGTCACTGCTCCTAATCCTATTGAGCCGAGGAGAAGACCTGCAGAGCTCAGATCCAGCTATACGAACTATGCAAAATAACCAGTGgtgagtatagtagcaggctatgtgaatcaactctgtcgccttccatgtca Alignment from Pairagon TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG cacccctgaccaccctgactgttagctgtgggtctgtgtgcccaccacagTTTGGGTTGTCACTGCTCCTAATCCTATTGAGCCGAGGAGAAGACCTGCAGAGCTCAGATCCAGCTATACGAACTATGCAAAATAACCAGTGgtgagtatagtagcaggctatgtgaatcaactctgtcgccttccatgtca Alignment from Exonerate_protein2genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG cacccctgaccaccctgactgttagctgtgggtctgtgtgcccaccacagTTTGGGTTGTCACTGCTCCTAATCCTATTGAGCCGAGGAGAAGACCTGCAGAGCTCAGATCCAGCTATACGAACTATGCAAAATAACCAGTGgtgagtatagtagcaggctatgtgaatcaactctgtcgccttccatgtca Alignment from Exonerate_coding2genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG cacccctgaccaccctgactgttagctgtgggtctgtgtgcccaccacagTTTGGGTTGTCACTGCTCCTAATCCTATTGAGCCGAGGAGAAGACCTGCAGAGCTCAGATCCAGCTATACGAACTATGCAAAATAACCAGTGgtgagtatagtagcaggctatgtgaatcaactctgtcgccttccatgtca Alignment from GeneWise TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG cacccctgaccaccctgactgttagctgtgggtctgtgtgcccaccacagTTTGGGTTGTCACTGCTCCTAATCCTATTGAGCCGAGGAGAAGACCTGCAGAGCTCAGATCCAGCTATACGAACTATGCAAAATAACCAGTGgtgagtatagtagcaggctatgtgaatcaactctgtcgccttccatgtca #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCAACCCGA-GAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tcctagctttccccttttctggtctatcaatatttgaatcttaacattaggACAGAGGTGATGTTTATGGCAGCCCGACGAACTGG-CCGTATCCTGCAAGTGGCCCTTTCCAACTCAATTTCTATTCCTACAAATCTAGCATCCTTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAATTTGTTAGAGACCAAACTGcagtgagttttgtcacgctttttctgctttgtcggctgacaaaaactgagtt Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tcctagctttccccttttctggtctatcaatatttgaatcttaacattaggACAGAGGTGATGTTTATGGCAGCCCGACGAACTGGCCGTATCCTGCAAGTGGCCCTTTCCAACTCAATTTCTATTCCTACAAATCTAGCATCCTTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAATTTGTTAGAGACCAAACTGcagtgagttttgtcacgctttttctgctttgtcggctgacaaaaactgagtt Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcctagctttccccttttctggtctatcaatatttgaatcttaacattagGACAGAGGTGATGTTTATGGCAGCCCGACGAACTGGCCGTATCCTGCAAGTGGCCCTTTCCAACTCAATTTCTATTCCTACAAATCTAGCATCCTTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAATTTGTTAGAGACCAAACTGCAgtgagttttgtcacgctttttctgctttgtcggctgacaaaaactgagtt Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcctagctttccccttttctggtctatcaatatttgaatcttaacattagGACAGAGGTGATGTTTATGGCAGCCCGACGAACTGGCCGTATCCTGCAAGTGGCCCTTTCCAACTCAATTTCTATTCCTACAAATCTAGCATCCTTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAATTTGTTAGAGACCAAACTGCAgtgagttttgtcacgctttttctgctttgtcggctgacaaaaactgagtt Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcctagctttccccttttctggtctatcaatatttgaatcttaacattagGACAGAGGTGATGTTTATGGCAGCCCGACGAACTGGCCGTATCCTGCAAGTGGCCCTTTCCAACTCAATTTCTATTCCTACAAATCTAGCATCCTTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAATTTGTTAGAGACCAAACTGCAgtgagttttgtcacgctttttctgctttgtcggctgacaaaaactgagtt Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tcctagctttccccttttctggtctatcaatatttgaatcttaacattagGACAGAGGTGATGTTTATGGCAGCCCGACGAACTGGCCGTATCCTGCAAGTGGCCCTTTCCAACTCAATTTCTATTCCTACAAATCTAGCATCCTTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAATTTGTTAGAGACCAAACTGCAGtgagttttgtcacgctttttctgctttgtcggctgacaaaaactgagtt Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tcctagctttccccttttctggtctatcaatatttgaatcttaacattagGACAGAGGTGATGTTTATGGCAGCCCGACGAACTGGCCGTATCCTGCAAGTGGCCCTTTCCAACTCAATTTCTATTCCTACAAATCTAGCATCCTTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAATTTGTTAGAGACCAAACTGCAGtgagttttgtcacgctttttctgctttgtcggctgacaaaaactgagtt Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tcctagctttccccttttctggtctatcaatatttgaatcttaacattagGACAGAGGTGATGTTTATGGCAGCCCGACGAACTGGCCGTATCCTGCAAGTGGCCCTTTCCAACTCAATTTCTATTCCTACAAATCTAGCATCCTTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAATTTGTTAGAGACCAAACTGCAGtgagttttgtcacgctttttctgctttgtcggctgacaaaaactgagtt #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCA-CCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tataaggtgagacattgtgctggcagctacccccaccttccccaccgcaggcAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCCCGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCCTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCCTGCTCCCA-TGATGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtacaggacttgtggtaaaggggtctccctggtcaccaaggtggttactc Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tataaggtgagacattgtgctggcagctacccccaccttccccaccgcaggcAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCCCGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCCTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCCTGCTCCCATGATGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtacaggacttgtggtaaaggggtctccctggtcaccaaggtggttactc Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tataaggtgagacattgtgctggcagctacccccaccttccccaccgcagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCCCGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCCTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCCTGCTCCCATGATGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtacaggacttgtggtaaaggggtctccctggtcaccaaggtggttactc Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tataaggtgagacattgtgctggcagctacccccaccttccccaccgcagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCCCGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCCTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCCTGCTCCCATGATGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtacaggacttgtggtaaaggggtctccctggtcaccaaggtggttactc Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCA-CCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tataaggtgagacattgtgctggcagctacccccaccttccccaccgcagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCCCGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCCTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCCTGCTCCCA-TGATGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtacaggacttgtggtaaaggggtctccctggtcaccaaggtggttactc Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tataaggtgagacattgtgctggcagctacccccaccttccccaccgcagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCCCGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCCTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCCTGCTCCCATGATGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtacaggacttgtggtaaaggggtctccctggtcaccaaggtggttactc Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tataaggtgagacattgtgctggcagctacccccaccttccccaccgcagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCCCGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCCTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCCTGCTCCCATGATGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtacaggacttgtggtaaaggggtctccctggtcaccaaggtggttactc Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tataaggtgagacattgtgctggcagctacccccaccttccccaccgcagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCCCGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCCTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCCTGCTCCCATGATGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtacaggacttgtggtaaaggggtctccctggtcaccaaggtggttactc #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGAT-GACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagaCTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATCGATGCAG-TTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAggtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagaCTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATCGATGCAGTTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAggtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATCGATGCAGTTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATCGATGCAGTTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAAT-------------GTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATCGATGCAGT-------------TGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATCGATGCAGTTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATCGATGCAGTTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAGGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATCGATGCAGTTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGGTAGgtgcaaggttttaagaaaattataaggtgagacattgtgctggcag #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGAC-TTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagcCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATCTTCAGGA-CACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagcCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATCTTCAGGACACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATCTTCAGGACACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCA------G ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATCTTCAGGACACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from Pairagon CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCA------------------------------------------------------------ ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATCTTCAGGACACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGGTATGTTATAATTAAGGCAGAGTAGGGGCGGGTGCCTTCCCTTTACCTTA Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATCTTCAGGACACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from Exonerate_coding2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATCTTCAGGACACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCAC------CAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATCTTCAGGACACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment GTGGCCACTg tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATA-GACATGCATGGCTTTGGAGGCACAg GTGGCAACTggtaatgcagttcaagatacacttatgttttctttgtttagtaTTCACCTTATGCTTTCCATTTGTCTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAAATACGATATGCATG-TTTTGGAGGCACAggtgtgttgtgctcagggtggtcttttccaggaagatcgcatctaccaaat Alignment from CESAR GTGGCCACTg tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATA-GACATGCATGGCTTTGGAGGCACAg GTGGCAACTggtagaccagttcaagatacacttatgttttctttgtttagtaTTCACCTTATGCTTTCCATTTGTCTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAAATACGATATGCAT-GTTTTGGAGGCACAggtgtgttgtgctcagggtggtcttttccaggaagatcgcatctaccaaat Alignment from Spaln_aa2Genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaatgcagttcaagatacacttatgttttctttgtttagTATTCACCTTATGCTTTCCATTTGTCTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAAATACGATATGCATGTTTTGGAGGCACAGgtgtgttgtgctcagggtggtcttttccaggaagatcgcatctaccaaat Alignment from Spaln_nt2Genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATA-GACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaatgcagttcaagatacacttatgttttctttgtttagTATTCACCTTATGCTTTCCATTTGTCTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAAATACGATATGCAT-GTTTTGGAGGCACAGgtgtgttgtgctcagggtggtcttttccaggaagatcgcatctaccaaat Alignment from Pairagon GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATA-GACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaatgcagttcaagatacacttatgttttctttgtttagTATTCACCTTATGCTTTCCATTTGTCTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAAATACGATATGCAT-GTTTTGGAGGCACAGgtgtgttgtgctcagggtggtcttttccaggaagatcgcatctaccaaat Alignment from Exonerate_protein2genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaatgcagttcaagatacacttatgttttctttgtttagTATTCACCTTATGCTTTCCATTTGTCTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAAATACGATATGCATGTTTTGGAGGCACAGgtgtgttgtgctcagggtggtcttttccaggaagatcgcatctaccaaat Alignment from Exonerate_coding2genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaatgcagttcaagatacacttatgttttctttgtttagTATTCACCTTATGCTTTCCATTTGTCTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAAATACGATATGCATGTTTTGGAGGCACAGgtgtgttgtgctcagggtggtcttttccaggaagatcgcatctaccaaat Alignment from GeneWise GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaatgcagttcaagatacacttatgttttctttgtttagTATTCACCTTATGCTTTCCATTTGTCTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAAATACGATATGCATGTTTTGGAGGCACAGgtgtgttgtgctcagggtggtcttttccaggaagatcgcatctaccaaat #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACC-GCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACACACTCAAC-CTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTggtagaccagttcaagatatctttttcttttctaataacagtaTTCACCTT Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACACACTCAACCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTggtagaccagttcaagatacacttatgttttctttgtttagtaTTCACCTT Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACACACTCAACCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatatctttttcttttctaataacagTATTCACCTT Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACACACTCAACCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatatctttttcttttctaataacagTATTCACCTT Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGAC-CGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACACACTCAA-CCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatatctttttcttttctaataacagTATTCACCTT Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACACACTCAACCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatatctttttcttttctaataacagTATTCACCTT Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACACACTCAACCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatatctttttcttttctaataacagTATTCACCTT Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACACACTCAACCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatatctttttcttttctaataacagTATTCACCTT #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTCGATGCAG-ATCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTCGATGCAGATCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTCGATGCAGATCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Spaln_nt2Genome AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTCGATGCAG-ATCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Pairagon AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTCGATGCAG-ATCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Exonerate_protein2genome atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagagcatccaacctcgatgcagatcacccatgcatgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Exonerate_coding2genome atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagagcatccaacctcgatgcagatcacccatgcatgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from GeneWise atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagagcatccaacctcgatgcagatcacccatgcatgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGGATGGAG-GATTCTGGGCCCCTCAGAg tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGCGATT-TGGACCTCTCAGAggtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from CESAR GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGCGATTTGGACCTCTCAGAggtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGCGATTTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGCGATTTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Pairagon GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGCGATTTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Exonerate_protein2genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGCGATTTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Exonerate_coding2genome tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagaagttgctaccacggatggagcgatttggacctctcagaggtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from GeneWise GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGCGATTTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTC-CGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcaggGATCCTGGTGTAGAGACTACAGTATTTCCAGAAAGTTA-TTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcaggGATCCTGGTGTAGAGACTACAGTATTTCCAGAAAGTTATTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTAGAGACTACAGTATTTCCAGAAAGTTATTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTT-CCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTAGAGACTACAGTATTTCCAGAAAGTTA-TTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCAC------------------------GCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTAGAGA------------------------CTACAGTATTTCCAGAAAGTTATTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTAGAGACTACAGTATTTCCAGAAAGTTATTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Exonerate_coding2genome aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagggatcctggtgtagagactacagtatttccagaaagttattccttgcctcctgtacactgcagtttccagcgctctgaagtaggatttaaccatgtgtcagtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTAGAGACTACAGTATTTCCAGAAAGTTATTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg #### Pcsk5_ID4264_19 --> 2 - 2 Original Alignment ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGT-AGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gggtatgacatgtaccagctgattgcctttaattgtcttttctacaaaagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTCAGTGTGA-TTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtaaggttaccaattgtagtccagccccgacactcagtatgagttggctc Alignment from CESAR ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gggtatgacatgtaccagctgattgcctttaattgtcttttctacaaaagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTCAGTGTGATTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtaaggttaccaattgtagtccagccccgacactcagtatgagttggctc Alignment from Spaln_aa2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtaccagctgattgcctttaattgtcttttctacaaaagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTCAGTGTGATTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtaaggttaccaattgtagtccagccccgacactcagtatgagttggctc Alignment from Spaln_nt2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtaccagctgattgcctttaattgtcttttctacaaaagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTCAGTGTGATTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtaaggttaccaattgtagtccagccccgacactcagtatgagttggctc Alignment from Pairagon GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGT-AGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtaccagctgattgcctttaattgtcttttctacaaaagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTCAGTGTGA-TTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtaaggttaccaattgtagtccagccccgacactcagtatgagttggctc Alignment from Exonerate_protein2genome CTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtaccagctgattgcctttaattgtcttttCTACAAAAGGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTCAGTGTGATTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtaaggttaccaattgtagtccagccccgacactcagtatgagttggctc Alignment from Exonerate_coding2genome ACTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtaccagctgattgcctttaattgtctttTCTACAAAAGGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTCAGTGTGATTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtaaggttaccaattgtagtccagccccgacactcagtatgagttggctc Alignment from GeneWise GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtaccagctgattgcctttaattgtcttttctacaaaagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTCAGTGTGATTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtaaggttaccaattgtagtccagccccgacactcagtatgagttggctc #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACC-CGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCCGAGCCT-CTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCCGAGCCTCTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCCGAGCCTCTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Spaln_nt2Genome tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacaggagctagagaagaattataccccgagcctctctgaagccttggcggcttttgggaacagagccctgtttgtcgagaagtttattggacagccaagccattttgaggtgcagatcctaggtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCCGAGCCTCTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCCGAGCCTCTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCCGAGCCTCTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCCGAGCCTCTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGC-CTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctcaatcttttgatcatagctctgttctgttctttggtgatagGGCATAGCAGGCCCTGCTGA-GCCAGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGGTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTGGCTTGTTCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAggtgagacaagagattgacttatagttgaatgactgatagtgctgcaataa Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctcaatcttttgatcatagctctgttctgttctttggtgatagGGCATAGCAGGCCCTGCTGAGCCAGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGGTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTGGCTTGTTCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAggtgagacaagagattgacttatagttgaatgactgatagtgctgcaataa Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagctctgttctgttctttggtgatagGGCATAGCAGGCCCTGCTGAGCCAGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGGTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTGGCTTGTTCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtgagacaagagattgacttatagttgaatgactgatagtgctgcaataa Alignment from Spaln_nt2Genome GACATGGCGGGCC-TGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagctctgttctgttctttggtgatagGGCATAGCAGGCCCTGCTG-AGCCAGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGGTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTGGCTTGTTCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtgagacaagagattgacttatagttgaatgactgatagtgctgcaataa Alignment from Pairagon GACATGGCGGG-CCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagctctgttctgttctttggtgatagGGCATAGCAGGCCCTGCTG-AGCCAGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGGTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTGGCTTGTTCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtgagacaagagattgacttatagttgaatgactgatagtgctgcaataa Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagctctgttctgttctttggtgatagGGCATAGCAGGCCCTGCTGAGCCAGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGGTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTGGCTTGTTCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtgagacaagagattgacttatagttgaatgactgatagtgctgcaataa Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagctctgttctgttctttggtgatagGGCATAGCAGGCCCTGCTGAGCCAGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGGTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTGGCTTGTTCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtgagacaagagattgacttatagttgaatgactgatagtgctgcaataa Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagctctgttctgttctttggtgatagGGCATAGCAGGCCCTGCTGAGCCAGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGGTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTGGCTTGTTCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtgagacaagagattgacttatagttgaatgactgatagtgctgcaataa #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCC-CAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCCAGTTCA-GGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtcttttcttttgtctttgtg Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCCAGTTCAGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtcttttgagtatacggccac Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCCAGTTCAGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtcttttcttttgtctttgtg Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCCAGTTCAGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtcttttcttttgtctttgtg Alignment from Pairagon ------------------------------------------------AGGTGACACCATCCTCCAAGATTGTGGGGGACCTGG-CCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTA---------------------------------------------------- CTATCTATGGTGGTTACCTGACAAGCCTCTGTTGATGTCTGTCTCTGCAGGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCCAGTTCA-GGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAGTGATGTAGGTTGGTCAGGGTGTAAATCAGTCTTTTCTTTTGTCTTTGTG Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCCAGTTCAGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtcttttcttttgtctttgtg Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCCAGTTCAGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtcttttcttttgtctttgtg Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCCAGTTCAGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtcttttcttttgtctttgtg #### Pcx_ID569_18 --> 0 - 0 Original Alignment GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTG-AACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtgtaaatcagtcttttgagtatacggccactgagcagGTGCTAAAGGACCTGCCAAGAATTGAAGGACGGCCGGGAGCCTCCTTACCTCCCTTACAACC-GAAGGAGTTGGATAAGGGCCTGATTGATAGACACGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCGGCTATGTACCCATAT------ACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTCGATAGCCTAAATACGCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgcgtggtttctatatttgtgtctactcatcccatgggcctttagtgtg Alignment from CESAR GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtgtaaatcagtcttttgagtatacggccactgagcagGTGCTAAAGGACCTGCCAAGAATTGAAGGACGGCCGGGAGCCTCCTTACCTCCCTTACAACCGAAGGAGTTGGATAAGGGCCTGATTGATAGACACGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCGGCTATGTACCCA------TATACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTCGATAGCCTAAATACGCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgcgtggtttctatatttgtgtctactcatcccatgggcctttagtgtg Alignment from Spaln_aa2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtgtaaatcagtcttttgagtatacggccactgagcagGTGCTAAAGGACCTGCCAAGAATTGAAGGACGGCCGGGAGCCTCCTTACCTCCCTTACAACCGAAGGAGTTGGATAAGGGCCTGATTGATAGACACGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCGGCTATGTACCCA------TATACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTCGATAGCCTAAATACGCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgcgtggtttctatatttgtgtctactcatcccatgggcctttagtgtg Alignment from Spaln_nt2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtgtaaatcagtcttttgagtatacggccactgagcagGTGCTAAAGGACCTGCCAAGAATTGAAGGACGGCCGGGAGCCTCCTTACCTCCCTTACAACCGAAGGAGTTGGATAAGGGCCTGATTGATAGACACGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCGGCTATGTACCC------ATATACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTCGATAGCCTAAATACGCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgcgtggtttctatatttgtgtctactcatcccatgggcctttagtgtg Alignment from Pairagon ------------------------------------------------AGGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG AGGTTGGTCAGGGTGTAAATCAGTCTTTTGAGTATACGGCCACTGAGCAGGTGCTAAAGGACCTGCCAAGAATTGAAGGACGGCCGGGAGCCTCCTTACCTCCCTTACAACCGAAGGAGTTGGATAAGGGCCTGATTGATAGACACGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCGGCTATGTACCC------ATATACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTCGATAGCCTAAATACGCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgcgtggtttctatatttgtgtctactcatcccatgggcctttagtgtg Alignment from Exonerate_protein2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtgtaaatcagtcttttgagtatacggccactgagcagGTGCTAAAGGACCTGCCAAGAATTGAAGGACGGCCGGGAGCCTCCTTACCTCCCTTACAACCGAAGGAGTTGGATAAGGGCCTGATTGATAGACACGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCGGCTATGTACCCA------TATACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTCGATAGCCTAAATACGCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgcgtggtttctatatttgtgtctactcatcccatgggcctttagtgtg Alignment from Exonerate_coding2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtgtaaatcagtcttttgagtatacggccactgagcagGTGCTAAAGGACCTGCCAAGAATTGAAGGACGGCCGGGAGCCTCCTTACCTCCCTTACAACCGAAGGAGTTGGATAAGGGCCTGATTGATAGACACGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCGGCTATGTACCCA------TATACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTCGATAGCCTAAATACGCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgcgtggtttctatatttgtgtctactcatcccatgggcctttagtgtg Alignment from GeneWise GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtgtaaatcagtcttttgagtatacggccactgagcagGTGCTAAAGGACCTGCCAAGAATTGAAGGACGGCCGGGAGCCTCCTTACCTCCCTTACAACCGAAGGAGTTGGATAAGGGCCTGATTGATAGACACGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCGGCTATGTACCCA------TATACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTCGATAGCCTAAATACGCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgcgtggtttctatatttgtgtctactcatcccatgggcctttagtgtg #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGG-CAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA ctgcctccaagacttaggtccctcctcccacccacctgcctgtcctccagGTTAAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACCAGG-GTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaagcctaaatttgatttcaatatattgttttactctctagGAAATGCA Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA ctgcctccaagacttaggtccctcctcccacccacctgcctgtcctccagGTTAAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACCAGGGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaagcctaaatttgatttccctctgtctgtctgcccaacagGAAATGCA Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA ctgcctccaagacttaggtccctcctcccacccacctgcctgtcctccagGTTAAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACCAGGGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaagcctaaatttgatttcaatatattgttttactctctagGAAATGCA Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA ctgcctccaagacttaggtccctcctcccacccacctgcctgtcctccagGTTAAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACCAGGGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaagcctaaatttgatttcaatatattgttttactctctagGAAATGCA Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA ctgcctccaagacttaggtccctcctcccacccacctgcctgtcctccagGTTAAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACCAGGGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaagcctaaatttgatttcaatatattgttttactctctagGAAATGCA Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA ctgcctccaagacttaggtccctcctcccacccacctgcctgtcctccagGTTAAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACCAGGGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaagcctaaatttgatttcaatatattgttttactctctagGAAATGCA Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA ctgcctccaagacttaggtccctcctcccacccacctgcctgtcctccagGTTAAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACCAGGGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaagcctaaatttgatttcaatatattgttttactctctagGAAATGCA Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA ctgcctccaagacttaggtccctcctcccacccacctgcctgtcctccagGTTAAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACCAGGGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaagcctaaatttgatttcaatatattgttttactctctagGAAATGCA #### Pdcd11_ID10126_20 --> 1 - 2 Original Alignment gTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATC-CTGGAGCTGAGTGTTCGGCCAag tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagaTTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCCTGG-GTTGAGTGTTCGTCCAaggtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from CESAR gTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAag tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagaTTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCCTGGGTTGAGTGTTCGTCCAaggtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Spaln_aa2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCCTGGGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Spaln_nt2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCCTGGGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Pairagon GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCCTGGGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Exonerate_protein2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCCTGGGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Exonerate_coding2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCA tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCCTGGGTTGAGTGTTCGTCCAaggtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from GeneWise GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCCTGGGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTG-TCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagcATCAACCCCATGAAGAACCTGATAGAGTTGCTCCCTCCTTC-AAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagcATCAACCCCATGAAGAACCTGATAGAGTTGCTCCCTCCTTCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGCTCCCTCCTTCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGCTCCCTCCTTCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTG-TCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGCTCCCTCCTT-CAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGCTCCCTCCTTCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Exonerate_coding2genome ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagcatcaaccccatgaagaacctgatagagttgctccctccttcaagtgacactgggaggcaagatgtttcccctcctgccccagaaccagaacaagaggaaggtagcggaggggctgaagggggccaaaaacagaaggaaaagaatcagaagagacgggatgagaaggaagagccacagaagtcacagaggggtgggcgaggaaagcgtgagcatcatgaatctgagagtgagcaggtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGCTCCCTCCTTCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGC-TTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTCTTTCTCT-GGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTCTTTCTCTGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTCTTTCTCTGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTCTTTCTCTGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTCTTTCTCTGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTCTTTCTCTGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Exonerate_coding2genome gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcaggggaagaagacaaagtctacggaagtgtctcgtctgcacctctcttcaggtctttctctggatgtgggacttgattctctaaccccgtccttgccactccgggaagaaagctcagacagtgaggatgagcagccacaccaggctaaggtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTCTTTCTCTGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTC-ATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatcttactcaaaggagttggagctcattctctttctctttcccacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAGGCGAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGCATGGACC-TGGGCGACAACCAGAGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtgaggactctgggtcttctgcagttcagatggataatcagttttaaact Alignment from CESAR AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatcttactcaaaggagttggagctcattctctttctctttcccacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAGGCGAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGCATGGACCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtgaggactctgggtcttctgcagttcagatggataatcagttttaaact Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagttggagctcattctctttctctttcccacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAGGCGAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGCATGGACCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtgaggactctgggtcttctgcagttcagatggataatcagttttaaact Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACT-CATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagttggagctcattctctttctctttcccacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAGGCGAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGCATGGA-CCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtgaggactctgggtcttctgcagttcagatggataatcagttttaaact Alignment from Pairagon AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACT-CATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagttggagctcattctctttctctttcccacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAGGCGAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGCATGGA-CCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtgaggactctgggtcttctgcagttcagatggataatcagttttaaact Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagttggagctcattctctttctctttcccacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAGGCGAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGCATGGACCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtgaggactctgggtcttctgcagttcagatggataatcagttttaaact Alignment from Exonerate_coding2genome ctcatcttactcaaaggagttggagctcattctctttctctttcccacagaagaagaaaggtaaaaaagaaagggagctggagaagcaaaaggcgaagaaagagctgtcacgcatcgaaaaggcactgcatggacctgggcgacaaccagagtctgctgatgaatctgaccagctggtgctaagttttcctaacagctccatcctttggctgcagtacatggcattccatctgcaaactacagaaattgaaagggcccgggctgtagctgagagggctttgaagaccatctcattccggtgaggactctgggtcttctgcagttcagatggataatcagttttaaact Alignment from GeneWise AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagttggagctcattctctttctctttcccacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAGGCGAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGCATGGACCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtgaggactctgggtcttctgcagttcagatggataatcagttttaaact #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAG-CTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagatGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGTTCCAACCTTGGGG-TGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagatGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGTTCCAACCTTGGGGTGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGTTCCAACCTTGGGGTGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGTTCCAACCTTGGGGTGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAGGG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGTTCCAACCTTGGGGTGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGGTgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGTTCCAACCTTGGGGTGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGTTCCAACCTTGGGGTGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGTTCCAACCTTGGGGTGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTACATT-TTACATGGAAAAGAAGAGATCAACGTGATTcc ggatacctttgatgctatttagttcgtcgcgcgccgagagccccacgcagGAGATCATATTCTACAAAATTACTGACTACATTCTTGC-TGGGAAGGAAGAACTCAATGTGATTccgtaggtagtcacttggagccagtttaccttcccatgccacaatgacataa Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ggatacctttgatgctatttagttcgtcgcgcgccgagagccccacgcagGAGATCATATTCTACAAAATTACTGACTACATTCTTGCTGGGAAGGAAGAACTCAATGTGATTccgtaggtagtcacttggagccagtttaccttcccatgccacaatgacataa Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ggatacctttgatgctatttagttcgtcgcgcgccgagagccccacgcagGAGATCATATTCTACAAAATTACTGACTACATTCTTGCTGGGAAGGAAGAACTCAATGTGATTCCgtaggtagtcacttggagccagtttaccttcccatgccacaatgacataa Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ggatacctttgatgctatttagttcgtcgcgcgccgagagccccacgcagGAGATCATATTCTACAAAATTACTGACTACATTCTTGCTGGGAAGGAAGAACTCAATGTGATTCCgtaggtagtcacttggagccagtttaccttcccatgccacaatgacataa Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ggatacctttgatgctatttagttcgtcgcgcgccgagagccccacgcagGAGATCATATTCTACAAAATTACTGACTACATTCTTGCTGGGAAGGAAGAACTCAATGTGATTCCgtaggtagtcacttggagccagtttaccttcccatgccacaatgacataa Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ggatacctttgatgctatttagttcgtcgcgcgccgagagccccacgcagGAGATCATATTCTACAAAATTACTGACTACATTCTTGCTGGGAAGGAAGAACTCAATGTGATTCCgtaggtagtcacttggagccagtttaccttcccatgccacaatgacataa Alignment from Exonerate_coding2genome ggatacctttgatgctatttagttcgtcgcgcgccgagagccccacgcaggagatcatattctacaaaattactgactacattcttgctgggaaggaagaactcaatgtgattccgtaggtagtcacttggagccagtttaccttcccatgccacaatgacataa Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ggatacctttgatgctatttagttcgtcgcgcgccgagagccccacgcagGAGATCATATTCTACAAAATTACTGACTACATTCTTGCTGGGAAGGAAGAACTCAATGTGATTCCgtaggtagtcacttggagccagtttaccttcccatgccacaatgacataa #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGT-GTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTA---------------CTTTACAT-CCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTACTTTACATC---------------CCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTACTTTACATC---------------CCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGA---TGTTAACTGCTTGCCAGATATTGTACT--------------TTACAT-CCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTA------------------------CCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGA------------------------------------------TGTTAACTGCTTGCCAGATATTGTACTTTACATCCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTACTTTACATC---------------CCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Exonerate_coding2genome tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagtactttctaaagtgtgatgttaactgcttgccagatattgtactttacatcccagtgccagctagtacctacattcgaaaggtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTACTTTACATC---------------CCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCC-CGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg atcttaagcttccaaaggcttccaacgtgtcatatccatcttcctcccaggtGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCCGAGACT-CAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATggtgagtaagaaaggcagaatgtagagaatgctgttatgggtgatattaat Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg atcttaagcttccaaaggcttccaacgtgtcatatccatcttcctcccaggtGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCCGAGACTCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATggtgagtaagaaaggcagaatgtagagaatgctgttatgggtgatattaat Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaacgtgtcatatccatcttcctcccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCCGAGACTCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgagtaagaaaggcagaatgtagagaatgctgttatgggtgatattaat Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaacgtgtcatatccatcttcctcccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCCGAGACTCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgagtaagaaaggcagaatgtagagaatgctgttatgggtgatattaat Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTG-CCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaacgtgtcatatccatcttcctcccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCCGAGACTC-AAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgagtaagaaaggcagaatgtagagaatgctgttatgggtgatattaat Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaacgtgtcatatccatcttcctcccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCCGAGACTCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgagtaagaaaggcagaatgtagagaatgctgttatgggtgatattaat Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaacgtgtcatatccatcttcctcccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCCGAGACTCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgagtaagaaaggcagaatgtagagaatgctgttatgggtgatattaat Alignment from GeneWise GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaacgtgtcatatccatcttcctcccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCCGAGACTCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgagtaagaaaggcagaatgtagagaatgctgttatgggtgatattaat #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGT-GGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTCGGCATTC-TGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTCGGCATTCTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTCGGCATTCTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGT-GGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTCGGCATTCT-GGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGT-GGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTCGGCATTCT-GGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTCGGCATTCTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTCGGCATTCTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTCGGCATTCTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAG-TGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACCGGAGAAGAGgtcagtgcgtgcttttctttgacagGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGCTGGA-TCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCATCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtaagtgagttagaagttagctgctaacttggctcctgtgaaacactgac Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACCGGAGAAGAGgtcgcagcgtgcttttctttgacagGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGCTGGATCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCATCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtaagtgagttagaagttagctgctaacttggctcctgtgaaacactgac Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGGTCAGTGCGTGCTTTTCTTTGACAgGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGCTGGATCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCATCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtaagtgagttagaagttagctgctaacttggctcctgtgaaacactgac Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGA------------------------GA-AGGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGGTCAGTGCGTGCTTTTCTTTGACAGGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGCTGGATCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCATCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtaagtgagttagaagttagctgctaacttggctcctgtgaaacactgac Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGGTCAGTGCGTGCTTTTCTTTGACAGGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGCTGGATCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCATCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtaagtgagttagaagttagctgctaacttggctcctgtgaaacactgac Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGAGAGAAGGTG TGTAGTTACACTCACCGGAGAAGAGGTCagtgcgtgcttttctttgacaggttgatgtctatgtcatgacacagcccctgtcaggcaagctggatcattttggcacagaggtcactaacagttctggccatcttaccttcccagtgtcatcagaacatgcactgggcattggtgtctaccctttgcacatggtggtcaggtaagtgagttagaagttagctgctaacttggctcctgtgaaacactgac Alignment from Exonerate_coding2genome TGTGGTCACGCTCACTGGAGAGAAGGTG TGTAGTTACACTCACCGGAGAAGAGGTCagtgcgtgcttttctttgacaggttgatgtctatgtcatgacacagcccctgtcaggcaagctggatcattttggcacagaggtcactaacagttctggccatcttaccttcccagtgtcatcagaacatgcactgggcattggtgtctaccctttgcacatggtggtcaggtaagtgagttagaagttagctgctaacttggctcctgtgaaacactgac Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCGGAGAAGAGgtcagtgcgtgcttttctttgacagGTTGATGTCTATGTCATGACACAGCCCCTGTCAGGCAAGCTGGATCATTTTGGCACAGAGGTCACTAACAGTTCTGGCCATCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtaagtgagttagaagttagctgctaacttggctcctgtgaaacactgac #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTG-CGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacactgacttactctgtatgaatatatttttcattttaggGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCGGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGCAGTGACCCCAAGGTGCCGAGCTGGAG-AGTAGATGTGGTGaggtaaccccagactgccgggccatatattgatcttctgtctgtgatgtggt Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacactgacttactctgtatgaatatatttttcattttaggGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCGGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGCAGTGACCCCAAGGTGCCGAGCTGGAGAGTAGATGTGGTGaggtaaccccagactgccgggccatatattgatcttctgtctgtgatgtggt Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacactgacttactctgtatgaatatatttttcattttagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCGGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGCAGTGACCCCAAGGTGCCGAGCTGGAGAGTAGATGTGGTGAGgtaaccccagactgccgggccatatattgatcttctgtctgtgatgtggt Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGC-GCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacactgacttactctgtatgaatatatttttcattttagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCGGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGCAGTGACCCCAAGGTGCCGAGCTGGAG-AGTAGATGTGGTGAGgtaaccccagactgccgggccatatattgatcttctgtctgtgatgtggt Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTG-CGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacactgacttactctgtatgaatatatttttcattttagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCGGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGCAGTGACCCCAAGGTGCCGAGCTGGAG-AGTAGATGTGGTGAGgtaaccccagactgccgggccatatattgatcttctgtctgtgatgtggt Alignment from Exonerate_protein2genome gctcctgtgaaacactgacttactctgtatgaatatatttttcattttaggggtgaccacacatatgctgaatgctgcttaaccattgtctccagaggtgctgaagcggtggttttcagcattgatggttcttttactgcaagtgtctcaatcatgggcagtgaccccaaggtgccgagctggagagtagatgtggtgaggtaaccccagactgccgggccatatattgatcttctgtctgtgatgtggt Alignment from Exonerate_coding2genome gctcctgtgaaacactgacttactctgtatgaatatatttttcattttaggggtgaccacacatatgctgaatgctgcttaaccattgtctccagaggtgctgaagcggtggttttcagcattgatggttcttttactgcaagtgtctcaatcatgggcagtgaccccaaggtgccgagctggagagtagatgtggtgaggtaaccccagactgccgggccatatattgatcttctgtctgtgatgtggt Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacactgacttactctgtatgaatatatttttcattttagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCGGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGCAGTGACCCCAAGGTGCCGAGCTGGAGAGTAGATGTGGTGAGgtaaccccagactgccgggccatatattgatcttctgtctgtgatgtggt #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTAC-AATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcagatacacagcgtgctccagcacatttttgcctctctagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACCAATGCCATTG-CAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtgacttaaagaactgtgtgttctttttctgttggggatattct Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcagatacacagcgtgctccagcacatttttgcctctctagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACCAATGCCATTGCAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtgacttaaagaactgtgtgttctttttctgttggggatattct Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcagatacacagcgtgctccagcacatttttgcctctctagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACCAATGCCATTGCAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtgacttaaagaactgtgtgttctttttctgttggggatattct Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcagatacacagcgtgctccagcacatttttgcctctctagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACCAATGCCATTGCAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtgacttaaagaactgtgtgttctttttctgttggggatattct Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTA-CAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcagatacacagcgtgctccagcacatttttgcctctctagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACCAATGCCATTG-CAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtgacttaaagaactgtgtgttctttttctgttggggatattct Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcagatacacagcgtgctccagcacatttttgcctctctagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACCAATGCCATTGCAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtgacttaaagaactgtgtgttctttttctgttggggatattct Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcagatacacagcgtgctccagcacatttttgcctctctagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACCAATGCCATTGCAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtgacttaaagaactgtgtgttctttttctgttggggatattct Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcagatacacagcgtgctccagcacatttttgcctctctagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACCAATGCCATTGCAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtgacttaaagaactgtgtgttctttttctgttggggatattct #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTG-GCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcctcatcattgctctgcctacaacctatttttcaaattcttttctagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACAAC-GCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtgagaccttgtggggttgcatatacacaccaataggggaactggtcagc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcctcatcattgctctgcctacaacctatttttcaaattcttttctagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACAACGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtgagaccttgtggggttgcatatacacaccaataggggaactggtcagc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcctcatcattgctctgcctacaacctatttttcaaattcttttctagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACAACGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtgagaccttgtggggttgcatatacacaccaataggggaactggtcagc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTG-GCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcctcatcattgctctgcctacaacctatttttcaaattcttttctagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACAAC-GCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtgagaccttgtggggttgcatatacacaccaataggggaactggtcagc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTG-GCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcctcatcattgctctgcctacaacctatttttcaaattcttttctagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACAAC-GCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtgagaccttgtggggttgcatatacacaccaataggggaactggtcagc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcctcatcattgctctgcctacaacctatttttcaaattcttttctagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACAACGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtgagaccttgtggggttgcatatacacaccaataggggaactggtcagc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcctcatcattgctctgcctacaacctatttttcaaattcttttctagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACAACGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtgagaccttgtggggttgcatatacacaccaataggggaactggtcagc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcctcatcattgctctgcctacaacctatttttcaaattcttttctagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACAACGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtgagaccttgtggggttgcatatacacaccaataggggaactggtcagc #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment gGAACTGACAGAGATTAATCGGCGGCACATCACT-GAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatacttaagctcagtgccctcttgttttgcaggGAGTTGACAGAGATTAACCGGCAACACATCACTCGAGTCCA-AAATTCCAACAGACGGgtaggcgggacttatctctttgtcaccaacggaggccatcctctactatt Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatacttaagctcagtgccctcttgttttgcaggGAGTTGACAGAGATTAACCGGCAACACATCACTCGAGTCCAAAATTCCAACAGACGGgtaggcgggacttatctctttgtcaccaacggaggccatcctctactatt Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatacttaagctcagtgccctcttgttttgcagGGAGTTGACAGAGATTAACCGGCAACACATCACTCGAGTCCAAAATTCCAACAGACGGgtaggcgggacttatctctttgtcaccaacggaggccatcctctactatt Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatacttaagctcagtgccctcttgttttgcagGGAGTTGACAGAGATTAACCGGCAACACATCACTCGAGTCCAAAATTCCAACAGACGGgtaggcgggacttatctctttgtcaccaacggaggccatcctctactatt Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGGCACATCACT-GAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatacttaagctcagtgccctcttgttttgcagGGAGTTGACAGAGATTAACCGGCAACACATCACTCGAGTCCA-AAATTCCAACAGACGGgtaggcgggacttatctctttgtcaccaacggaggccatcctctactatt Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatacttaagctcagtgccctcttgttttgcagGGAGTTGACAGAGATTAACCGGCAACACATCACTCGAGTCCAAAATTCCAACAGACGGgtaggcgggacttatctctttgtcaccaacggaggccatcctctactatt Alignment from Exonerate_coding2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatacttaagctcagtgccctcttgttttgcagGGAGTTGACAGAGATTAACCGGCAACACATCACTCGAGTCCAAAATTCCAACAGACGGgtaggcgggacttatctctttgtcaccaacggaggccatcctctactatt Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gctctgagatgcagggcaatacttaagctcagtgccctcttgttttgcagGGAGTTGACAGAGATTAACCGGCAACACATCACTCGAGTCCAAAATTCCAACAGACGGgtaggcgggacttatctctttgtcaccaacggaggccatcctctactatt #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTG-GAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttatgtcagtcagagagtatcctagctttttttcccacaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAACTGAGAGAAGCCCAGGGTGATGTGCGAGACCA-CCGCAAGCTGGAACATCTACGACAGgtatgtgatcagtggggggtggttgtttggctgttatttttgcagGCGCA Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttatgtcagtcagagagtatcctagctttttttcccacaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAACTGAGAGAAGCCCAGGGTGATGTGCGAGACCACCGCAAGCTGGAACATCTACGACAGgtatgtgatcagtggggggtggtcctgccacatcggctctcctagGCGCA Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttatgtcagtcagagagtatcctagctttttttcccacagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAACTGAGAGAAGCCCAGGGTGATGTGCGAGACCACCGCAAGCTGGAACATCTACGACAGgtatgtgatcagtggggggtggttgtttggctgttatttttgcagGCGCA Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttatgtcagtcagagagtatcctagctttttttcccacagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAACTGAGAGAAGCCCAGGGTGATGTGCGAGACCACCGCAAGCTGGAACATCTACGACAGgtatgtgatcagtggggggtggttgtttggctgttatttttgcagGCGCA Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTG-GAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttatgtcagtcagagagtatcctagctttttttcccacagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAACTGAGAGAAGCCCAGGGTGATGTGCGAGACCAC-CGCAAGCTGGAACATCTACGACAGgtatgtgatcagtggggggtggttgtttggctgttatttttgcagGCGCA Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttatgtcagtcagagagtatcctagctttttttcccacagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAACTGAGAGAAGCCCAGGGTGATGTGCGAGACCACCGCAAGCTGGAACATCTACGACAGgtatgtgatcagtggggggtggttgtttggctgttatttttgcagGCGCA Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttatgtcagtcagagagtatcctagctttttttcccacagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAACTGAGAGAAGCCCAGGGTGATGTGCGAGACCACCGCAAGCTGGAACATCTACGACAGgtatgtgatcagtggggggtggttgtttggctgttatttttgcagGCGCA Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGA---------------------------------------------CAGGCTCA agaggtccagttatgtcagtcagagagtatcctagctttttttcccacagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAACTGAGAGAAGCCCAGGGTGATGTGCGAGACCACCGCAAGCTGGAACATCTACGACAGGTATGTGATCAGTGGGGGGTGGTTGTTTGGCTGTTATTTTTGCAGGCGCA #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCT-GCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcaggcTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTCGCCT-GCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGggtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcaggcTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTCGCCTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGggtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTCGCCTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTCGCCTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTCGCCTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTCGCCTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTCGCCTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from GeneWise GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTCGCCTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTAC-TTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagatTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATCTTGC-CAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagatTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATCTTGCCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATCTTGCCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATCTTGCCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATCTTGCCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATCTTGCCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATCTTGCCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATCTTGCCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTG-CTCATTGACCCTCTCGACAAATACCCG ttgcacaggtcatattcacgggtcatatagctggccatctttctccccagaGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACCTTATTG-CCCTCTTGACAAGTATCCAgtaagtgacaggcctggacctccaggtgcatgtgggggaggggagcctga Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ttgcacaggtcatattcacgggtcatatagctggccatctttctccccagaGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACCTTATTGCCCTCTTGACAAGTATCCAgtaagtgacaggcctggacctccaggtgcatgtgggggaggggagcctga Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ttgcacaggtcatattcacgggtcatatagctggccatctttctccccagAGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACCTTATTGCCCTCTTGACAAGTATCCAgtaagtgacaggcctggacctccaggtgcatgtgggggaggggagcctga Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGC-TCATTGACCCTCTCGACAAATACCCG ttgcacaggtcatattcacgggtcatatagctggccatctttctccccagAGCAAAGCAGCA---CGAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACCTTATTG-CCCTCTTGACAAGTATCCAgtaagtgacaggcctggacctccaggtgcatgtgggggaggggagcctga Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTG-CTCATTGACCCTCTCGACAAATACCCG ttgcacaggtcatattcacgggtcatatagctggccatctttctccccagAGCAAAGCAGCA---CGAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACCTTATTG-CCCTCTTGACAAGTATCCAgtaagtgacaggcctggacctccaggtgcatgtgggggaggggagcctga Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ttgcacaggtcatattcacgggtcatatagctggccatctttctccccagAGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACCTTATTGCCCTCTTGACAAGTATCCAgtaagtgacaggcctggacctccaggtgcatgtgggggaggggagcctga Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ttgcacaggtcatattcacgggtcatatagctggccatctttctccccagAGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACCTTATTGCCCTCTTGACAAGTATCCAgtaagtgacaggcctggacctccaggtgcatgtgggggaggggagcctga Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ttgcacaggtcatattcacgggtcatatagctggccatctttctccccagAGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACCTTATTGCCCTCTTGACAAGTATCCAgtaagtgacaggcctggacctccaggtgcatgtgggggaggggagcctga #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATC-AAC------CAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagaGGCATGAAGGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGCAACCAACAAG-GAAGCAGAGAGACCCGAGACTG---------------------------TCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTggtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagaGGCATGAAGGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGCAACCAACAAGGAAGCAGAGAGACCCGAGACTG---------------------------TCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTggtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATC------AACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagAGGCATGAAGGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGCAACCAACAAGGAAGCAGAGAGACCCGAGACTG---------------------------TCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTAT-CAACCA-----GAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagAGGCATGAAGGGCAAGCCTTACCT---TCTGGAGCAGCTTATGGACTTTGTGCAACCAACAAGGAAGCAGAGAGACCCGAGACT---------------------------GTCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTAT-CAACCA-----GAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagAGGCATGAAGGGCAAGCCTTACCT---TCTGGAGCAGCTTATGGACTTTGTGCAACCAACAAGGAAGCAGAGAGACCCGAGACT---------------------------GTCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Exonerate_protein2genome CCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagaggcatgaagggcaagccttaccttctggagcagcttatggactttgtgcaaccaacaaggaagcagagagacCCGAGACTGTCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Exonerate_coding2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCGAC agtagtaaggagctaccatcaggagtgttcaccttgttctgGTGTCCTAGAGGCATGAAGGGCAAGCCTTACCTTCTGGAGCAGCTTATGGACTTTGTGCAACCAACAAGGAAGCAGAGAGACCCGAGACTGTCCT---CACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGGTATGGCCATACAGgtaagatagcagtgcgggtgggatctgctttgctta Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATC------AACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagAGGCATGAAGGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGCAACCAACAAGGAAGCAGAGAGACCCGAGACTG---------------------------TCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCC-GTGCAAGATGACACAGTCAAG aggatcaaaatttatgcacattttgagcttgggttcctttcttgtttcagGATCCTAAGATTCGAGAAGTT------TTTGGTGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAATTTCATGGCTCGTGCAGG-CGGCACAGTCAAGgtgagtccaggctgatctccatattgaaggcattagtacattcaaacctt Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG aggatcaaaatttatgcacattttgagcttgggttcctttcttgtttcagGATCCTAAGATTCGAGAAGTT------TTTGGTGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAATTTCATGGCTCGTGCAGGCGGCACAGTCAAGgtgagtccaggctgatctccatattgaaggcattagtacattcaaacctt Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG aggatcaaaatttatgcacattttgagcttgggttcctttcttgtttcagGATCCTAAGATTCGAGAAGTT------TTTGGTGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAATTTCATGGCTCGTGCAGGCGGCACAGTCAAGgtgagtccaggctgatctccatattgaaggcattagtacattcaaacctt Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG aggatcaaaatttatgcacattttgagcttgggttcctttcttgtttcagGATCCTAAGATTCGAGAAGT------TTTTGGTGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAATTTCATGGCTCGTGCAGGCGGCACAGTCAAGgtgagtccaggctgatctccatattgaaggcattagtacattcaaacctt Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGC-CGTGCAAGATGACACAGTCAAG aggatcaaaatttatgcacattttgagcttgggttcctttcttgtttcagGATCCTAAGATTCGAGAAGT------TTTTGGTGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAATTTCATGGCTCGTGC-AGGCGGCACAGTCAAGgtgagtccaggctgatctccatattgaaggcattagtacattcaaacctt Alignment from Exonerate_protein2genome aggatcaaaatttatgcacattttgagcttgggttcctttcttgtttcaggatcctaagattcgagaagtttttggtggccctgatacacgactggaggagagattgatgacagtggttgctgggccggatttagtaactaccacattcttgaatttcatggctcgtgcaggcggcacagtcaaggtgagtccaggctgatctccatattgaaggcattagtacattcaaacctt Alignment from Exonerate_coding2genome aggatcaaaatttatgcacattttgagcttgggttcctttcttgtttcaggatcctaagattcgagaagtttttggtggccctgatacacgactggaggagagattgatgacagtggttgctgggccggatttagtaactaccacattcttgaatttcatggctcgtgcaggcggcacagtcaaggtgagtccaggctgatctccatattgaaggcattagtacattcaaacctt Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG aggatcaaaatttatgcacattttgagcttgggttcctttcttgtttcagGATCCTAAGATTCGAGAAGTT------TTTGGTGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAATTTCATGGCTCGTGCAGGCGGCACAGTCAAGgtgagtccaggctgatctccatattgaaggcattagtacattcaaacctt #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGA-AATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa agcatgcaaggctggtaattgcccccatgaccaccactgttcgctctcaggtTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGAAGGAGACTGGG---CTCCTAGTG---TTGTTCGGACAACG-ACGTAACTCTAAGCAGTATCAAGTTTTCaagtaagtaattggaaacatcacacagccccttagtgttctaagtgaggaat Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa agcatgcaaggctggtaattgcccccatgaccaccactgttcgctctcaggtTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGAAGGAGACTGGG---CTCCTAGTG---TTGTTCGGACAACGACGTAACTCTAAGCAGTATCAAGTTTTCaagtaagtaattggaaacatcacacagccccttagtgttctaagtgaggaat Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA agcatgcaaggctggtaattgcccccatgaccaccactgttcgctctcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGAAGGAGACTGGG------CTCCTAGTGTTGTTCGGACAACGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaagtaattggaaacatcacacagccccttagtgttctaagtgaggaat Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA agcatgcaaggctggtaattgcccccatgaccaccactgttcgctctcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGAAGGAGACTGGGC---TCCTAGT---GTTGTTCGGACAACGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaagtaattggaaacatcacacagccccttagtgttctaagtgaggaat Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA agcatgcaaggctggtaattgcccccatgaccaccactgttcgctctcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGAAGGAGACTGGGC---TCCTAGT---GTTGTTCGGACAACGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaagtaattggaaacatcacacagccccttagtgttctaagtgaggaat Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA agcatgcaaggctggtaattgcccccatgaccaccactgttcgctctcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGAAGGAGACTGGG------CTCCTAGTGTTGTTCGGACAACGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaagtaattggaaacatcacacagccccttagtgttctaagtgaggaat Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA agcatgcaaggctggtaattgcccccatgaccaccactgttcgctctcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGAAGGAGACTGGG------CTCCTAGTGTTGTTCGGACAACGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaagtaattggaaacatcacacagccccttagtgttctaagtgaggaat Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTC-- agcatgcaaggctggtaattgcccccatgaccaccactgttcgctctcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGAAGGAGACTGGG------CTCCTAGTGTTGTTCGGACAACGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaagtaattggaaacatcacacagccccttagtgttctaagtgaggaat #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTT-CTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCCTCCCTT-GAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCCTCCCTTGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCCTCCCTTGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCCTCCCTTGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCCTCCCTTGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCCTCCCTTGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Exonerate_coding2genome GGGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctaGGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCCTCCCTTGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCCTCCCTTGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac #### Pold4_ID437_2 --> 2 - 1 Original Alignment ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGG-CAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gcaagaaggtttaggcggagcagggggattttccatctttcattttatagggGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCCAGT-TGACTTGACATGGCAATATGGGCCTTGTACAggtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from CESAR ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gcaagaaggtttaggcggagcagggggattttccatctttcattttatagggGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCCAGTTGACTTGACATGGCAATATGGGCCTTGTACAggtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Spaln_aa2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCCAGTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Spaln_nt2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCCAGTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Pairagon GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCCAGTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Exonerate_protein2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCCAGTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Exonerate_coding2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCCAGTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from GeneWise GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCCAGTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt #### Poll_ID9484_3 --> 1 - 0 Original Alignment gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGC-ACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttaaatagctccctgctgagggtcccttcacacaggTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTCACCC-GTGGGACTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCTCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtaaaatggcaagccactcgagaccgttaatgatagaaaatgcaagaatc Alignment from CESAR gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttaaatagctccctgctgagggtcccttcacacaggTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTCACCCGTGGGACTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCTCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtaaaatggcaagccactcgagaccgttaatgatagaaaatgcaagaatc Alignment from Spaln_aa2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttaaatagctccctgctgagggtcccttcacacagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTCACCCGTGGGACTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCTCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtaaaatggcaagccactcgagaccgttaatgatagaaaatgcaagaatc Alignment from Spaln_nt2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttaaatagctccctgctgagggtcccttcacacagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTCACCCGTGGGACTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCTCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtaaaatggcaagccactcgagaccgttaatgatagaaaatgcaagaatc Alignment from Pairagon GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttaaatagctccctgctgagggtcccttcacacagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTCACCCGTGGGACTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCTCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtaaaatggcaagccactcgagaccgttaatgatagaaaatgcaagaatc Alignment from Exonerate_protein2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttaaatagctccctgctgagggtcccttcacacagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTCACCCGTGGGACTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCTCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtaaaatggcaagccactcgagaccgttaatgatagaaaatgcaagaatc Alignment from Exonerate_coding2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttaaatagctccctgctgagggtcccttcacacagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTCACCCGTGGGACTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCTCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtaaaatggcaagccactcgagaccgttaatgatagaaaatgcaagaatc Alignment from GeneWise GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttaaatagctccctgctgagggtcccttcacacagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTCACCCGTGGGACTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCTCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtaaaatggcaagccactcgagaccgttaatgatagaaaatgcaagaatc #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTG-AAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtcccttgtgaagctagttaaagtctgtttgacccttctctaccagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGCAAGCAGA-GCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGaagtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtcccttgtgaagctagttaaagtctgtttgacccttctctaccagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGCAAGCAGAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGaagtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttctctaccagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGCAAGCAGAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttctctaccagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGCAAGCAGAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Pairagon TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTG-AAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttCTCTACCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGCAAGCAG-AGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Exonerate_protein2genome TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttCTCTACCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGCAAGCAGAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Exonerate_coding2genome TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttCTCTACCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGCAAGCAGAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttCTCTACCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGCAAGCAGAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa #### Ppp1ca_ID411_5 --> 2 - 0 Original Alignment gcCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACA-GACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgttctcatcctttagttaggtataagactgcaataacaatctcttttaggcCTGTCTCCAGGCTTACAATCCATGGAGCAAATCAGGCACATTATGCGGCCCACACGATGTTCCAG-CCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtatgtacaaatgacactgggactggtgggcagtccccatggattgacca Alignment from CESAR gcCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgttctcatcctttagttaggtataagactgcaataacaatctcttttaggcCTGTCTCCAGGCTTACAATCCATGGAGCAAATCAGGCACATTATGCGGCCCACACGATGTTCCAGCCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtatgtacaaatgacactgggactggtgggcagtccccatggattgacca Alignment from Spaln_aa2Genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgttctcatcctttagttaggtataagactgcaataacaatctcttttagGCCTGTCTCCAGGCTTACAATCCATGGAGCAAATCAGGCACATTATGCGGCCCACACGATGTTCCAGCCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtatgtacaaatgacactgggactggtgggcagtccccatggattgacca Alignment from Spaln_nt2Genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgttctcatcctttagttaggtataagactgcaataacaatctcttttagGCCTGTCTCCAGGCTTACAATCCATGGAGCAAATCAGGCACATTATGCGGCCCACACGATGTTCCAGCCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtatgtacaaatgacactgggactggtgggcagtccccatggattgacca Alignment from Pairagon GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACA-GACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgttctcatcctttagttaggtataagactgcaataacaatctcttttagGCCTGTCTCCAGGCTTACAATCCATGGAGCAAATCAGGCACATTATGCGGCCCACACGATGTTCCAG-CCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtatgtacaaatgacactgggactggtgggcagtccccatggattgacca Alignment from Exonerate_protein2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgttctcatcctttagttaggtataagactgcaataacaatctcttttagGCCTGTCTCCAGGCTTACAATCCATGGAGCAAATCAGGCACATTATGCGGCCCACACGATGTTCCAGCCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtatgtacaaatgacactgggactggtgggcagtccccatggattgacca Alignment from Exonerate_coding2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgttctcatcctttagttaggtataagactgcaataacaatctcttttagGCCTGTCTCCAGGCTTACAATCCATGGAGCAAATCAGGCACATTATGCGGCCCACACGATGTTCCAGCCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtatgtacaaatgacactgggactggtgggcagtccccatggattgacca Alignment from GeneWise GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgttctcatcctttagttaggtataagactgcaataacaatctcttttagGCCTGTCTCCAGGCTTACAATCCATGGAGCAAATCAGGCACATTATGCGGCCCACACGATGTTCCAGCCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtatgtacaaatgacactgggactggtgggcagtccccatggattgacca #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTTGAC-TGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACCTGTT-TAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctat Alignment from CESAR GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctcc Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctat Alignment from Spaln_nt2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctat Alignment from Pairagon GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctat Alignment from Exonerate_protein2genome GAGCTGT atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagcaactattagttgacctgtttaaacccactgaggtaagttactgcccctccccacaggcatgaagctgtttctttgGATCTAT Alignment from Exonerate_coding2genome GAGCTGT atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagcaactattagttgacctgtttaaacccactgaggtaagttactgcccctccccacaggcatgaagctgtttctttgGATCTAT Alignment from GeneWise GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctat #### Ppp1r32_ID2841_10 --> 0 - 2 Original Alignment GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTAT-GTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAgg gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATCGTTCAAA-TTCTTATGAGGAAGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGgggtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from CESAR GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAgg gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATCGTTCAAATTCTTATGAGGAAGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGgggtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Spaln_aa2Genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATCGTTCAAATTCTTATGAGGAAGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Spaln_nt2Genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATCGTTCAAATTCTTATGAGGAAGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Pairagon ---------------------------------------------ACAAGGAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG GTTATCATCCCAAATTATGAGCTACCATTGTTTTATTCTCCTGTTATAAGGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATCGTTCAAATTCTTATGAGGAAGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Exonerate_protein2genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATCGTTCAAATTCTTATGAGGAAGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Exonerate_coding2genome gttatcatcccaaattatgagctaccattgttttattctcctgttataaggaaccaacagggtttaacctgaacaaccccagttatcgttcaaattcttatgaggaagacagagaccagaggtacctaagtacctataatcaggggtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from GeneWise GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATCGTTCAAATTCTTATGAGGAAGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCA-CAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCCAATCTGCCA-CATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCCAATCTGCCACATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCCAATCTGCCACATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Spaln_nt2Genome GTGCCTACTCCAGC-CCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCCAATCTGCCA-CATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Pairagon GTGCCTACTCCAGC-CCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCCAATCTGCCA-CATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCCAATCTGCCACATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCCAATCTGCCACATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCCAATCTGCCACATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGATGATTCT-TTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACCTGCTTT-TCTATGTGGGAACCATTGGCTGAAAaggtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACCTGCTTTTCTATGTGGGAACCATTGGCTGAAAaggtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACCTGCTTTTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACCTGCTTTTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Pairagon GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACCTGCTTTTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACCTGCTTTTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Exonerate_coding2genome GCGACAGACTTATTATT ctacaaataatagggccatccttgcaccataaatatattttctgatttaggtgactgacctcttattagatgattcacctgcttttctatgtgggaaccattggctgaaaaggtaagggagacctccagtctctcccccatacttACTGACTGCAGGATAGC Alignment from GeneWise GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACCTGCTTTTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAAT-GGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagtcTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATCGGCACAG-TCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAggtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagtcTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATCGGCACAGTCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAggtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATCGGCACAGTCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATCGGCACAGTCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAAT-GGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATCGGCACAG-TCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Exonerate_protein2genome TCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttccccttTCAGTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATCGGCACAGTCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Exonerate_coding2genome TCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttccccttTCAGTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATCGGCACAGTCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG ttaacttttctgtgacattcttcctgctttgctt---TTTCCCCTTTCAGTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATCGGCACAGTCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCT-CTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaagtctacttttgcccattcaccctccctagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAAC-TGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtatgtcacattccactgtagactccccatgtgtcttctttctgacctta Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgagactacttttgcccattcaccctccctagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACTGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtatgtcacattccactgtagactccccacactcgcctctctctttgaca Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagtctacttttgcccattcaccctccctagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACTGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacattccactgtagactccccatgtgtcttctttctgacctta Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagtctacttttgcccattcaccctccctagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACTGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacattccactgtagactccccatgtgtcttctttctgacctta Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCT-CTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagtctacttttgcccattcaccctccctagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAAC-TGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacattccactgtagactccccatgtgtcttctttctgacctta Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagtctacttttgcccattcaccctccctagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACTGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacattccactgtagactccccatgtgtcttctttctgacctta Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagtctacttttgcccattcaccctccctagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACTGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacattccactgtagactccccatgtgtcttctttctgacctta Alignment from GeneWise CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAA--------------------------------------------------- CCTTGCAAGATGAGTGGgtaagtctacttttgcccattcaccctccctagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACTGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGGTATGTCACATTCCACTGTAGACTCCCCATGTGTCTTCTTTCTGACCTTA #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCA-AGCTCACAGCCCAGTGTTGTG tcagccacattccactgtagactccccacactcgcctctctctttgacagccTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCACAGCTCAC-ACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from CESAR ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tatgtcacattccactgtagactccccacactcgcctctctctttgacagccTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCACAGCTCACACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tcagccacattccactgtagactccccacactcgcctctctctttgacagCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCACAGCTCACACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tcagccacattccactgtagactccccacactcgcctctctctttgacagCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCACAGCTCACACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Pairagon TC---------------------------------------------------TGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCA-AGCTCACAGCCCAGTGTTGTG TCAGCCACATTCCACTGTAGACTCCCCACACTCGCCTCTCTCTTTGACAGCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCACAGCTCACA-CCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tcagccacattccactgtagactccccacactcgcctctctctttgacagCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCACAGCTCACACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAA tcagccacattccactgtagactccccacactcgcctctctctttgacagccttggccaccctaaaaccacaagctggcctgatagtacctcaagctgtgccacagctcacacccagtgtagtagtaagttttgcacccttagcaccccactagcaaaTAACACCTCATGAGAG Alignment from GeneWise -------------------------------------------------GCTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG TCAGCCACATTCCACTGTAGACTCCCCACACTCGCCTCTCTCTTTGACAGCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCACAGCTCACACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATG-ACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGCACCCCTG-GATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGCACCCCTGGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGCACCCCTGGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGT---GGGAATG-ACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGCACCCCTG-GATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGT---GGGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGCACCCCTGGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGCACCCCTGGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGCACCCCTGGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGCACCCCTGGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCT-ACTGTGCTAACCACGGAG------CGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCCACTGTGT-AACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCCACTGTGTAACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCCACTGTGTAACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Spaln_nt2Genome CTTCAAGACAAGGCT-ACTGTGCTAACCACGGAG------CGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCCACTGTG-TAACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Pairagon CTTCAAGACAAGG-CTACTGT ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCCACTGTgtaaccacagacacaggacaaaagaaagtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCCACTGTGTAACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Exonerate_coding2genome ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagcttcaagacaaggcccactgtgtaaccacagacacaggacaaaagaaagtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from GeneWise --------------- ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagcttcaagacaaggcccactgtgtaaccacagacacaggacaaaagaaagtgaggctggcctatgtggatatctgcatctttagCGAGAAGTGTGTGCA #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATC-CAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCTTTGACATCCCAGA-AGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCTTTGACATCCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCTTTGACATCCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCTTTGACATCCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Pairagon TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCTTTGACATCCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCTTTGACATCCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCTTTGACATCCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCTTTGACATCCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTAC-CTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGG-GTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaacaccatt Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttatttgttttt Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaacaccatt Alignment from Spaln_nt2Genome AGGATCTACTA-CCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGG-GTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaacaccatt Alignment from Pairagon AGGATCTACTA-CCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGG-GTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaacaccatt Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaacaccatt Alignment from Exonerate_coding2genome gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagcggatttattatcctgtctttgggttctacatgggccggacactacaaaacaccatggtaaatcttgccttagggaatgcctgtgatgaggctacttaccaggtgagtaataaagcagcatctacgtgagcatttgagttttaaacaccatt Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaacaccatt #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTG---GCCATCCCAGAGCTGATGAGGATTCTG-GTGGACCTGGAACGACTGGACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCACGTAGACC-TGAACAACTAGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from CESAR GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCACGTAGACCTGAACAACTAGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCACGTAGACCTGAACAACTAGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Spaln_nt2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATC---CCAGAGCTGATGAGGATTCTG-GTGGACCTGGAACGACTGGACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCACGTAGACCT-GAACAACTAGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Pairagon GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATC---CCAGAGCTGATGAGGATTCTG-GTGGACCTGGAACGACTGGACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCACGTAGACCT-GAACAACTAGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCACGTAGACCTGAACAACTAGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Exonerate_coding2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCACGTAGACCTGAACAACTAGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCACGTAGACCTGAACAACTAGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAA-GTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagaTTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAACGTCA-TGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagaTTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAACGTCATGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAACGTCATGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAA-GTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAACGTCA-TGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAACgtcatggattatataatgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAACGTCATGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Exonerate_coding2genome aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagatttaaagtgtttgtggatcacgaggagtatattaaatgtcaggacaaacgtcatggattatataatgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAACGTCATGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTC-AAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTCAAGA-ACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgcattgtgtctcacctt Alignment from CESAR GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTCAAGAACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgctttctctttttctct Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTCAAGAACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgcattgtgtctcacctt Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTCAAGAACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgcattgtgtctcacctt Alignment from Pairagon GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTCAAGAACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgcattgtgtctcacctt Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTCAAGAACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgcattgtgtctcacctt Alignment from Exonerate_coding2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTCAAGAACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgcattgtgtctcacctt Alignment from GeneWise GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT--------------- gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTCAAGAACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCGCAAGTTCTAGCCTGgtccagtgtcttgtggctgcattgtgtctcacctt #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGG-GAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctattcctgtccaggtttttttagtggattataactgttttacttgtagGAAGCCCACAAAATGGTGCAGCGAAGCAAACA-GAAACAGGCAACATCAGAAAAGCAGCTGAAGGAAGCTTGGGGCAAGgtgagctggggcaaagtgatcgctagtgccgtgcaccttacaatgcgcct Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctattcctgtccaggtttttttagtggattataactgttttacttgtagGAAGCCCACAAAATGGTGCAGCGAAGCAAACAGAAACAGGCAACATCAGAAAAGCAGCTGAAGGAAGCTTGGGGCAAGgtgagctggggcaaagtgatcgctagtgccgtgcaccttacaatgcgcct Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctattcctgtccaggtttttttagtggattataactgttttacttgtagGAAGCCCACAAAATGGTGCAGCGAAGCAAACAGAAACAGGCAACATCAGAAAAGCAGCTGAAGGAAGCTTGGGGCAAGgtgagctggggcaaagtgatcgctagtgccgtgcaccttacaatgcgcct Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGG-GAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctattcctgtccaggtttttttagtggattataactgttttacttgtagGAAGCCCACAAAATGGTGCAGCGAAGCAAACA-GAAACAGGCAACATCAGAAAAGCAGCTGAAGGAAGCTTGGGGCAAGgtgagctggggcaaagtgatcgctagtgccgtgcaccttacaatgcgcct Alignment from Pairagon GAAGCTCACAAGATGGTTCGG-GAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctattcctgtccaggtttttttagtggattataactgttttacttgtagGAAGCCCACAAAATGGTGCAGCGAAGCAAACA-GAAACAGGCAACATCAGAAAAGCAGCTGAAGGAAGCTTGGGGCAAGgtgagctggggcaaagtgatcgctagtgccgtgcaccttacaatgcgcct Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctattcctgtccaggtttttttagtggattataactgttttacttgtagGAAGCCCACAAAATGGTGCAGCGAAGCAAACAGAAACAGGCAACATCAGAAAAGCAGCTGAAGGAAGCTTGGGGCAAGgtgagctggggcaaagtgatcgctagtgccgtgcaccttacaatgcgcct Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctattcctgtccaggtttttttagtggattataactgttttacttgtagGAAGCCCACAAAATGGTGCAGCGAAGCAAACAGAAACAGGCAACATCAGAAAAGCAGCTGAAGGAAGCTTGGGGCAAGgtgagctggggcaaagtgatcgctagtgccgtgcaccttacaatgcgcct Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctattcctgtccaggtttttttagtggattataactgttttacttgtagGAAGCCCACAAAATGGTGCAGCGAAGCAAACAGAAACAGGCAACATCAGAAAAGCAGCTGAAGGAAGCTTGGGGCAAGgtgagctggggcaaagtgatcgctagtgccgtgcaccttacaatgcgcct #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTT-CGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCCGAACTG-TGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCaagtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCCGAACTGTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCaagtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCCGAACTGTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCCGAACTGTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCCGAACTGTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCCGAACTGTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCCGAACTGTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCCGAACTGTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc #### Rasgrp2_ID1703_2 --> 2 - 2 Original Alignment atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACtt cgatgtccccaggctgaagctccaagacctgaccctcccccaccccgcagatGATTCAGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTAATGATGTATCCATGGTACATACCTCTCCACTC-GTTGGCTTCAAAACTGCTCCACttgtgagtttggtggtccataacattggaaaatgttgagtgtctagtaccaa Alignment from CESAR atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt cgatgtccccaggctgaagctccaagacctgaccctcccccaccccgcagatGATTCAGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTAATGATGTATCCATGGTACATACCTCTCCACTCGTTGGCTTCAAAACTGCTCCACttgtgagtttggtggtccataacattggaaaatgttgagtgtctagtaccaa Alignment from Spaln_aa2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT cgatgtccccaggctgaagctccaagacctgaccctcccccaccccgcagATGATTCAGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTAATGATGTATCCATGGTACATACCTCTCCACTCGTTGGCTTCAAAACTGCTCCACTTgtgagtttggtggtccataacattggaaaatgttgagtgtctagtaccaa Alignment from Spaln_nt2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT cgatgtccccaggctgaagctccaagacctgaccctcccccaccccgcagATGATTCAGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTAATGATGTATCCATGGTACATACCTCTCCACTCGTTGGCTTCAAAACTGCTCCACTTgtgagtttggtggtccataacattggaaaatgttgagtgtctagtaccaa Alignment from Pairagon ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACTT cgatgtccccaggctgaagctccaagacctgaccctcccccaccccgcagATGATTCAGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTAATGATGTATCCATGGTACATACCTCTCCACTC-GTTGGCTTCAAAACTGCTCCACTTgtgagtttggtggtccataacattggaaaatgttgagtgtctagtaccaa Alignment from Exonerate_protein2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT cgatgtccccaggctgaagctccaagacctgaccctcccccaccccgcagATGATTCAGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTAATGATGTATCCATGGTACATACCTCTCCACTCGTTGGCTTCAAAACTGCTCCACTTgtgagtttggtggtccataacattggaaaatgttgagtgtctagtaccaa Alignment from Exonerate_coding2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT cgatgtccccaggctgaagctccaagacctgaccctcccccaccccgcagATGATTCAGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTAATGATGTATCCATGGTACATACCTCTCCACTCGTTGGCTTCAAAACTGCTCCACTTgtgagtttggtggtccataacattggaaaatgttgagtgtctagtaccaa Alignment from GeneWise ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT cgatgtccccaggctgaagctccaagacctgaccctcccccaccccgcagATGATTCAGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTAATGATGTATCCATGGTACATACCTCTCCACTCGTTGGCTTCAAAACTGCTCCACTTgtgagtttggtggtccataacattggaaaatgttgagtgtctagtaccaa #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACC-TCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG cgttgacttccactacaactctttggctgatctcttaactcctatttcagCCTACCAGTCCGACGAGTTGTATGTCACCTCCTCGACCT---GTCTTAGAAGAGTGGACACTCAGCTG-TAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaaatgcatgctcatttttctgaggctctaccccacccaatggtccact Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG cgttgacttccactacaactctttggctgatctcttaactcctatttcagCCTACCAGTCCGACGAGTTGTATGTCACCTCCTCGA---CCTGTCTTAGAAGAGTGGACACTCAGCTGTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaaatgcatgctcatttttctgaggctctaccccacccaatggtccact Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG cgttgacttccactacaactctttggctgatctcttaactcctatttcagCCTACCAGTCCGACGAGTTGTATGTCACCTCCTCGA---CCTGTCTTAGAAGAGTGGACACTCAGCTGTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaaatgcatgctcatttttctgaggctctaccccacccaatggtccact Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGAC-CTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG cgttgacttccactacaactctttggctgatctcttaactcctatttcagCCTACCAGTCCGACGAGTTGTATGTCACCTCCTCG---ACCTGTCTTAGAAGAGTGGACACTCAGCTG-TAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaaatgcatgctcatttttctgaggctctaccccacccaatggtccact Alignment from Pairagon CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGAC-CTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG cgttgacttccactacaactctttggctgatctcttaactcctatttcagCCTACCAGTCCGACGAGTTGTATGTCACCTCCTCGA---CCTGTCTTAGAAGAGTGGACACTCAGCTG-TAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaaatgcatgctcatttttctgaggctctaccccacccaatggtccact Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG cgttgacttccactacaactctttggctgatctcttaactcctatttcagCCTACCAGTCCGACGAGTTGTATGTCACCTCCTCGA---CCTGTCTTAGAAGAGTGGACACTCAGCTGTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaaatgcatgctcatttttctgaggctctaccccacccaatggtccact Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG cgttgacttccactacaactctttggctgatctcttaactcctatttcagCCTACCAGTCCGACGAGTTGTATGTCACCTCCTCGA---CCTGTCTTAGAAGAGTGGACACTCAGCTGTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaaatgcatgctcatttttctgaggctctaccccacccaatggtccact Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG cgttgacttccactacaactctttggctgatctcttaactcctatttcagCCTACCAGTCCGACGAGTTGTATGTCACCTCCTCGA---CCTGTCTTAGAAGAGTGGACACTCAGCTGTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaaatgcatgctcatttttctgaggctctaccccacccaatggtccact #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCT-GAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag ctaatttaggtgggaggtgaacttaggcactgttctccattcttacacagTTTTCAGGGCTCTTGTACACTATTGCA---AAGGGTCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTT-CGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGaggtaagtgaacctgagtacagtactgtcactttagctaaataaggagggga Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag ctaatttaggtgggaggtgaacttaggcactgttctccattcttacacagTTTTCAGGGCTCTTGTACACTATTGCA---AAGGGTCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGaggtaagtgaacctgagtacagtactgtcactttagctaaataaggagggga Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttaggtgggaggtgaacttaggcactgttctccattcttacacagTTTTCAGGGCTCTTGTACACTATTGCA---AAGGGTCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtaagtgaacctgagtacagtactgtcactttagctaaataaggagggga Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttaggtgggaggtgaacttaggcactgttctccattcttacacagTTTTCAGGGCTCTTGTACACTATTGC---AAAGGGTCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtaagtgaacctgagtacagtactgtcactttagctaaataaggagggga Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCT-GAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttaggtgggaggtgaacttaggcactgttctccattcttacacagTTTTCAGGGCTCTTGTACACTATTGC---AAAGGGTCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTC-GTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtaagtgaacctgagtacagtactgtcactttagctaaataaggagggga Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttaggtgggaggtgaacttaggcactgttctccattcttacacagTTTTCAGGGCTCTTGTACACTATTGCA---AAGGGTCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtaagtgaacctgagtacagtactgtcactttagctaaataaggagggga Alignment from Exonerate_coding2genome GCTCGTTTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttaggtgggaggtgaacttaggcactgttctccattcttACACAGTTTTCAGGGCTCTTGTACACTATTGCA---AAGGGTCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtaagtgaacctgagtacagtactgtcactttagctaaataaggagggga Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttaggtgggaggtgaacttaggcactgttctccattcttacacagTTTTCAGGGCTCTTGTACACTATTGCAAAG---GGTCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtaagtgaacctgagtacagtactgtcactttagctaaataaggagggga #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCT-GTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagcaTTTCAATTCTCGTACACTGCCCATAT-TGGTGCTTATACAGCGTTCCTCTTCATCCACACAggtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagcaTTTCAATTCTCGTACACTGCCCATATTGGTGCTTATACAGCGTTCCTCTTCATCCACACAggtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCCATATTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCCATATTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCCATATTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCCATATTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCCATATTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from GeneWise ------GTGGGAAGTATCTTCGTGTCTGCA---------------GCGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagGGTGTGGTAGGTGGGATTTTATGCTCTTGTACTATTAACTTTACAGCATTTCAATTCTCGTACACTGCCCATATTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTGCTTACCTTGATGGGC-TTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG gaatcttttgctcacaaaggcacaacaaaaatattgcttttttccttcagCCTGGAACATCACTGCTCATCTTGATGGGTCTTCA-GCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTACTAACTATGgtaaatcatgcttggtatttttactgcattattgtaacaagggatttggt Alignment from CESAR CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG gaatcttttgctcacaaaggcacaacaaaaatattgcttttttccttcagCCTGGAACATCACTGCTCATCTTGATGGGTCTTCAGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTACTAACTATGgtaaatcatgcttggtatttttactgcattattgtaacaagggatttggt Alignment from Spaln_aa2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG gaatcttttgctcacaaaggcacaacaaaaatattgcttttttccttcagCCTGGAACATCACTGCTCATCTTGATGGGTCTTCAGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTACTAACTATGgtaaatcatgcttggtatttttactgcattattgtaacaagggatttggt Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG gaatcttttgctcacaaaggcacaacaaaaatattgcttttttccttcagCCTGGAACATCACTGCTCATCTTGATGGGTCTTCAGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTACTAACTATGgtaaatcatgcttggtatttttactgcattattgtaacaagggatttggt Alignment from Pairagon CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG gaatcttttgctcacaaaggcacaacaaaaatattgcttttttccttcagCCTGGAACATCACTGCTCATCTTGATGGGTCTTCAGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTACTAACTATGgtaaatcatgcttggtatttttactgcattattgtaacaagggatttggt Alignment from Exonerate_protein2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG gaatcttttgctcacaaaggcacaacaaaaatattgcttttttccttcagCCTGGAACATCACTGCTCATCTTGATGGGTCTTCAGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTACTAACTATGgtaaatcatgcttggtatttttactgcattattgtaacaagggatttggt Alignment from Exonerate_coding2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG gaatcttttgctcacaaaggcacaacaaaaatattgcttttttccttcagCCTGGAACATCACTGCTCATCTTGATGGGTCTTCAGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTACTAACTATGgtaaatcatgcttggtatttttactgcattattgtaacaagggatttggt Alignment from GeneWise CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG gaatcttttgctcacaaaggcacaacaaaaatattgcttttttccttcagCCTGGAACATCACTGCTCATCTTGATGGGTCTTCAGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTACTAACTATGgtaaatcatgcttggtatttttactgcattattgtaacaagggatttggt #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGA-CGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagtGATGAAGTAGATGAGGGGCCAACGGG-TGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagtGATGAAGTAGATGAGGGGCCAACGGGTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCCAACGGGTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCCAACGGGTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCCAACGGGTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCCAACGGGTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCCAACGGGTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCCAACGGGTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAA-GACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagccATTTGTAGATATGGGACACGACTTTG-GGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctatttctatgccttaatcccagGT Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagccATTTGTAGATATGGGACACGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctgtcctttctttgcatctgcagGT Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACACGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctatttctatgccttaatcccagGT Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAA-GACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACACGACTTT-GGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctatttctatgccttaatcccagGT Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACACGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctatttctatgccttaatcccagGT Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACACGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctatttctatgccttaatcccagGT Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACACGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctatttctatgccttaatcccagGT Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACACGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctatttctatgccttaatcccagGT #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAG-AGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagaaCCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGCAGAAGCA-GGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagaaCCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGCAGAAGCAGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGCAGAAGCAGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGCAGAAGCAGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Pairagon AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAG-AGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGCAGAAGCA-GGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGCAGAAGCAGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Exonerate_coding2genome ctggaggccagggcacactgtaccacctttttttcttattctctcctcagaaccagcccaggcagctggcccttatgtggacatcatcaaacaaccaaatcaacaaggccgtttccgctataaatctgaggggcactctgaaggtggtatccctggtgagcagaagcaggatactaaaaagacacatcccactataaaggtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG agggcacactgtaccacct---------TTTTTTCTTATTCTCTCCTCAGAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGCAGAAGCAGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc #### Rela_ID1129_6 --> 2 - 1 Original Alignment ttCCTATAGAGGAGCAGCGCGGGGACTATGAC-TTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagaatttggtgttttctctttttgtctcctgcttctcctctagtcCCCATGGAGGAGCAGCACGGGGAATATGACCTTAA-TGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACcgtaaatggcagattcagatagtcacaaagtctttcttctcagccgcattc Alignment from CESAR ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagaatttggtgttttctctttttgtctcctgcttctcctctagtcCCCATGGAGGAGCAGCACGGGGAATATGACCTTAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACcgtaaatggcagattcagatagtcacaaagtctttcttctcagccgcattc Alignment from Spaln_aa2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgttttctctttttgtctcctgcttctcctctagTCCCCATGGAGGAGCAGCACGGGGAATATGACCTTAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaaatggcagattcagatagtcacaaagtctttcttctcagccgcattc Alignment from Spaln_nt2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgttttctctttttgtctcctgcttctcctctagTCCCCATGGAGGAGCAGCACGGGGAATATGACCTTAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaaatggcagattcagatagtcacaaagtctttcttctcagccgcattc Alignment from Pairagon TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgttttctctttttgtctcctgcttctcctctagTCCCCATGGAGGAGCAGCACGGGGAATATGACCTTAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaaatggcagattcagatagtcacaaagtctttcttctcagccgcattc Alignment from Exonerate_protein2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgttttctctttttgtctcctgcttctcctctagTCCCCATGGAGGAGCAGCACGGGGAATATGACCTTAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaaatggcagattcagatagtcacaaagtctttcttctcagccgcattc Alignment from Exonerate_coding2genome ttaccacagaatttggtgttttctctttttgtctcctgcttctcctctagtccccatggaggagcagcacggggaatatgaccttaatgctgtgcgcctctgcttcgaggtgacagtgcgggacccagcaggtgggccactcctcctcacccctgtcctctcacatccaatttttgataaccgtaaatggcagattcagatagtcacaaagtctttcttctcagccgcattc Alignment from GeneWise TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgttttctctttttgtctcctgcttctcctctagTCCCCATGGAGGAGCAGCACGGGGAATATGACCTTAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaaatggcagattcagatagtcacaaagtctttcttctcagccgcattc #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAG-ATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg aatggtcagggctaaggcacccatcgatatgaacacttttctctgtgtagggGCTCCCAACACTTCTAAGCTTAAGCATCTGCAGAG-AAACAGGAACTCAGGTAGCTGTCTTGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAAggtgagtagtgaactacacataaagacagtggggggggcagaagtggagtt Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg aatggtcagggctaaggcacccatcgatatgaacacttttctctgtgtagggGCTCCCAACACTTCTAAGCTTAAGCATCTGCAGAGAAACAGGAACTCAGGTAGCTGTCTTGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAAggtgagtagtgaactacacataaagacagtggggggggcagaagtggagtt Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG aatggtcagggctaaggcacccatcgatatgaacacttttctctgtgtagGGGCTCCCAACACTTCTAAGCTTAAGCATCTGCAGAGAAACAGGAACTCAGGTAGCTGTCTTGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAAGgtgagtagtgaactacacataaagacagtggggggggcagaagtggagtt Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG aatggtcagggctaaggcacccatcgatatgaacacttttctctgtgtagGGGCTCCCAACACTTCTAAGCTTAAGCATCTGCAGAGAAACAGGAACTCAGGTAGCTGTCTTGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAAGgtgagtagtgaactacacataaagacagtggggggggcagaagtggagtt Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAG-ATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG aatggtcagggctaaggcacccatcgatatgaacacttttctctgtgtagGGGCTCCCAACACTTCTAAGCTTAAGCATCTGCAGAG-AAACAGGAACTCAGGTAGCTGTCTTGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAAGgtgagtagtgaactacacataaagacagtggggggggcagaagtggagtt Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG aatggtcagggctaaggcacccatcgatatgaacacttttctctgtgtagGGGCTCCCAACACTTCTAAGCTTAAGCATCTGCAGAGAAACAGGAACTCAGGTAGCTGTCTTGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAAGgtgagtagtgaactacacataaagacagtggggggggcagaagtggagtt Alignment from Exonerate_coding2genome aatggtcagggctaaggcacccatcgatatgaacacttttctctgtgtaggggctcccaacacttctaagcttaagcatctgcagagaaacaggaactcaggtagctgtcttggaggggaagagattttccttctgtgtgacagggtgcaaaaaggtgagtagtgaactacacataaagacagtggggggggcagaagtggagtt Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG aatggtcagggctaaggcacccatcgatatgaacacttttctctgtgtagGGGCTCCCAACACTTCTAAGCTTAAGCATCTGCAGAGAAACAGGAACTCAGGTAGCTGTCTTGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAAGgtgagtagtgaactacacataaagacagtggggggggcagaagtggagtt #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCC-GCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gggttttaaaacaatgggcagaggaagtgtatttatatattcttttacaggCCCTCCACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTGAGCCTTCACGAGCGGCTGTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTCGCACTACATG-GCTAAGTACAGAGCCTCCAGGGgtgagtcacttagtcaccaattggccacatctgatcaggacaaaaggtgc Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gggttttaaaacaatgggcagaggaagtgtatttatatattcttttacaggCCCTCCACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTGAGCCTTCACGAGCGGCTGTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTCGCACTACATGGCTAAGTACAGAGCCTCCAGGGgtgagtcacttagtcaccaattggccacatctgatcaggacaaaaggtgc Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gggttttaaaacaatgggcagaggaagtgtatttatatattcttttacagGCCCTCCACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTGAGCCTTCACGAGCGGCTGTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTCGCACTACATGGCTAAGTACAGAGCCTCCAGGGgtgagtcacttagtcaccaattggccacatctgatcaggacaaaaggtgc Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGC-CGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gggttttaaaacaatgggcagaggaagtgtatttatatattcttttacagGCCCTCCACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTGAGCCTTCACGAGCGGCTGTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTCGCACTACATG-GCTAAGTACAGAGCCTCCAGGGgtgagtcacttagtcaccaattggccacatctgatcaggacaaaaggtgc Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGC-CGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gggttttaaaacaatgggcagaggaagtgtatttatatattcttttacagGCCCTCCACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTGAGCCTTCACGAGCGGCTGTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTCGCACTACATG-GCTAAGTACAGAGCCTCCAGGGgtgagtcacttagtcaccaattggccacatctgatcaggacaaaaggtgc Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gggttttaaaacaatgggcagaggaagtgtatttatatattcttttacagGCCCTCCACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTGAGCCTTCACGAGCGGCTGTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTCGCACTACATGGCTAAGTACAGAGCCTCCAGGGgtgagtcacttagtcaccaattggccacatctgatcaggacaaaaggtgc Alignment from Exonerate_coding2genome AAGCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gggttttaaaacaatgggcagaggaagtgtatttatatattcttttacAGGCCCTCCACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTGAGCCTTCACGAGCGGCTGTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTCGCACTACATGGCTAAGTACAGAGCCTCCAGGGgtgagtcacttagtcaccaattggccacatctgatcaggacaaaaggtgc Alignment from GeneWise GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gggttttaaaacaatgggcagaggaagtgtatttatatattcttttacagGCCCTCCACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTGAGCCTTCACGAGCGGCTGTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTCGCACTACATGGCTAAGTACAGAGCCTCCAGGGgtgagtcacttagtcaccaattggccacatctgatcaggacaaaaggtgc #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCT-TTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTCTTTGTCT-CAGCCACTATATTGAAGAAAGTACTGGTggtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from CESAR ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTCTTTGTCTCAGCCACTATATTGAAGAAAGTACTGGTggtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTCTTTGTCTCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCT-TTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTCTTTGTCT-CAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Pairagon ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCT-TTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTCTTTGTCT-CAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTCTTTGTCTCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTCTTTGTCTCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from GeneWise ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTCTTTGTCTCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCag tgaggattgcactgagctaaacagatagttttctgctatcattctttcaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TATTGCCGTACCaggtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCag tgaggattgcactgagctaaacagatagttttctgctatcattctttcaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TATTGCCGTACCaggtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATA tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATCTATTGCCgtaccaggtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCAG tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TATTGCCGTACCAGgtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Pairagon GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCT-CATCTGTGGATACTGCCGTACCAG tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TATTGCCGTACCAGgtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCAG tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TATTGCCGTACCAGgtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Exonerate_coding2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCAG tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TATTGCCGTACCAGgtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from GeneWise GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATA tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATCTATTGCCgtaccaggtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAG-GCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggtggcttttccccaggcttctttaccacttccctaaaaggGCAATTCATCAGCGCAGCCACCC-CAAAGAGCTAGAAGCTATCTCCCATCTGGGGATGggtaagtaaccctgtcttttatataaaacatattggggttacctggttaag Alignment from CESAR aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggtggcttttccccaggcttctttaccacttccctaaaaggGCAATTCATCAGCGCAGCCACCCCAAAGAGCTAGAAGCTATCTCCCATCTGGGGATGggtaagtaaccctgtcttttatataaaacatattggggttacctggttaag Alignment from Spaln_aa2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggtggcttttccccaggcttctttaccacttccctaaaagGGCAATTCATCAGCGCAGCCACCCCAAAGAGCTAGAAGCTATCTCCCATCTGGGGATGGgtaagtaaccctgtcttttatataaaacatattggggttacctggttaag Alignment from Spaln_nt2Genome AGCCATTCATCAG-GCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggtggcttttccccaggcttctttaccacttccctaaaagGGCAATTCATCAGCGCAGCCACCC-CAAAGAGCTAGAAGCTATCTCCCATCTGGGGATGGgtaagtaaccctgtcttttatataaaacatattggggttacctggttaag Alignment from Pairagon AGCCATTCATCAG-GCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggtggcttttccccaggcttctttaccacttccctaaaagGGCAATTCATCAGCGCAGCCACCC-CAAAGAGCTAGAAGCTATCTCCCATCTGGGGATGGgtaagtaaccctgtcttttatataaaacatattggggttacctggttaag Alignment from Exonerate_protein2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggtggcttttccccaggcttctttaccacttccctaaaagGGCAATTCATCAGCGCAGCCACCCCAAAGAGCTAGAAGCTATCTCCCATCTGGGGATGGgtaagtaaccctgtcttttatataaaacatattggggttacctggttaag Alignment from Exonerate_coding2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggtggcttttccccaggcttctttaccacttccctaaaagGGCAATTCATCAGCGCAGCCACCCCAAAGAGCTAGAAGCTATCTCCCATCTGGGGATGGgtaagtaaccctgtcttttatataaaacatattggggttacctggttaag Alignment from GeneWise AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggtggcttttccccaggcttctttaccacttccctaaaagGGCAATTCATCAGCGCAGCCACCCCAAAGAGCTAGAAGCTATCTCCCATCTGGGGATGGgtaagtaaccctgtcttttatataaaacatattggggttacctggttaag #### Rin1_ID811_6 --> 2 - 1 Original Alignment agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAG-CTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg gctagaatcaactgtacgcacccctccccctggcctttcactgccaccagagTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATACCTCAGCTAAAGGCTCGCTCCCCACAGGATCTGGCCCAAGGGTCTGGAGCTGCGCTTTGCTTCTTCAACCCTCCCTTATCAGGAGATCTAGGCCCAACTAGACGAGAGAAATTCAAGAGGAGTTTGAAAGTGCGAGTGTCTACTGACACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGCACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGCGGGAAGGCTCAGTGGGGTATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCAGGT---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAGCCTCTACTCAGATCCATGAGTTCTGCTTTCTGCTCTTTGCTGATACCAGAACGGCAGGTTGACTGGGCAGCCACAACACTGATGCAAAATCGATGCACAGTTGTGGGTCAACTGGTCCAAGACACCCTGTCTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACAAGCTATGCTAAGTGCAGAGCCTGGGGCCGG-AGAGCTACTGCTACCAGAGTGGCTCagtaaggcacttcagaagtacgatttcaacacaaaatcccctggatctctc Alignment from CESAR agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg gctagaatcaactgtacgcacccctccccctggcctttcactgccaccagagTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATACCTCAGCTAAAGGCTCGCTCCCCACAGGATCTGGCCCAAGGGTCTGGAGCTGCGCTTTGCTTCTTCAACCCTCCCTTATCAGGAGATCTAGGCCCAACTAGACGAGAGAAATTCAAGAGGAGTTTGAAAGTGCGAGTGTCTACTGACACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGCACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGCGGGAAGGCTCAGTGGGGTATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCAGGT---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAGCCTCTACTCAGATCCATGAGTTCTGCTTTCTGCTCTTTGCTGATACCAGAACGGCAGGTTGACTGGGCAGCCACAACACTGATGCAAAATCGATGCACAGTTGTGGGTCAACTGGTCCAAGACACCCTGTCTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACAAGCTATGCTAAGTGCAGAGCCTGGGGCCGGAGAGCTACTGCTACCAGAGTGGCTCagtaaggcacttcagaagtacgatttcaacacaaaatcccctgggatctgc Alignment from Spaln_aa2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactgtacgcacccctccccctggcctttcactgccaccagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATACCTCAGCTAAAGGCTCGCTCCCCACAGGATCTGGCCCAAGGGTCTGGAGCTGCGCTTTGCTTCTTCAACCCTCCCTTATCAGGAGATCTAGGCCCAACTAGACGAGAGAAATTCAAGAGGAGTTTGAAAGTGCGAGTGTCTACTGACACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGCACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGCGGGAAGGCTCAGTGGGGTATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCAGGT---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAGCCTCTACTCAGATCCATGAGTTCTGCTTTCTGCTCTTTGCTGATACCAGAACGGCAGGTTGACTGGGCAGCCACAACACTGATGCAAAATCGATGCACAGTTGTGGGTCAACTGGTCCAAGACACCCTGTCTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACAAGCTATGCTAAGTGCAGAGCCTGGGGCCGGAGAGCTACTGCTACCAGAGTGGCTCAgtaaggcacttcagaagtacgatttcaacacaaaatcccctggatctctc Alignment from Spaln_nt2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGC-TGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactgtacgcacccctccccctggcctttcactgccaccagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATACCTCAGCTAAAGGCTCGCTCCCCACAGGATCTGGCCCAAGGGTCTGGAGCTGCGCTTTGCTTCTTCAACCCTCCCTTATCAGGAGATCTAGGCCCAACTAGACGAGAGAAATTCAAGAGGAGTTTGAAAGTGCGAGTGTCTACTGACACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGCACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGCGGGAAGGCTCAGTGGGGTATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCAG---GTCCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAGCCTCTACTCAGATCCATGAGTTCTGCTTTCTGCTCTTTGCTGATACCAGAACGGCAGGTTGACTGGGCAGCCACAACACTGATGCAAAATCGATGCACAGTTGTGGGTCAACTGGTCCAAGACACCCTGTCTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACAAGCTATGCTAAGTGCAGAGCCTGGGGCCGGAG-AGCTACTGCTACCAGAGTGGCTCAgtaaggcacttcagaagtacgatttcaacacaaaatcccctggatctctc Alignment from Pairagon AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAG-CTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactgtacgcacccctccccctggcctttcactgccaccagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATACCTCAGCTAAAGGCTCGCTCCCCACAGGATCTGGCCCAAGGGTCTGGAGCTGCGCTTTGCTTCTTCAACCCTCCCTTATCAGGAGATCTAGGCCCAACTAGACGAGAGAAATTCAAGAGGAGTTTGAAAGTGCGAGTGTCTACTGACACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGCACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGCGGGAAGGCTCAGTGGGGTATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCAG---GTCCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAGCCTCTACTCAGATCCATGAGTTCTGCTTTCTGCTCTTTGCTGATACCAGAACGGCAGGTTGACTGGGCAGCCACAACACTGATGCAAAATCGATGCACAGTTGTGGGTCAACTGGTCCAAGACACCCTGTCTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACAAGCTATGCTAAGTGCAGAGCCTGGGGCCGGAG-AGCTACTGCTACCAGAGTGGCTCAgtaaggcacttcagaagtacgatttcaacacaaaatcccctggatctctc Alignment from Exonerate_protein2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactgtacgcacccctccccctggcctttcactgccaccagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATACCTCAGCTAAAGGCTCGCTCCCCACAGGATCTGGCCCAAGGGTCTGGAGCTGCGCTTTGCTTCTTCAACCCTCCCTTATCAGGAGATCTAGGCCCAACTAGACGAGAGAAATTCAAGAGGAGTTTGAAAGTGCGAGTGTCTACTGACACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGCACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGCGGGAAGGCTCAGTGGGGTATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCAGGT---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAGCCTCTACTCAGATCCATGAGTTCTGCTTTCTGCTCTTTGCTGATACCAGAACGGCAGGTTGACTGGGCAGCCACAACACTGATGCAAAATCGATGCACAGTTGTGGGTCAACTGGTCCAAGACACCCTGTCTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACAAGCTATGCTAAGTGCAGAGCCTGGGGCCGGAGAGCTACTGCTACCAGAGTGGCTCAgtaaggcacttcagaagtacgatttcaacacaaaatcccctggatctctc Alignment from Exonerate_coding2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactgtacgcacccctccccctggcctttcactgccaccagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATACCTCAGCTAAAGGCTCGCTCCCCACAGGATCTGGCCCAAGGGTCTGGAGCTGCGCTTTGCTTCTTCAACCCTCCCTTATCAGGAGATCTAGGCCCAACTAGACGAGAGAAATTCAAGAGGAGTTTGAAAGTGCGAGTGTCTACTGACACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGCACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGCGGGAAGGCTCAGTGGGGTATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCAGGT---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAGCCTCTACTCAGATCCATGAGTTCTGCTTTCTGCTCTTTGCTGATACCAGAACGGCAGGTTGACTGGGCAGCCACAACACTGATGCAAAATCGATGCACAGTTGTGGGTCAACTGGTCCAAGACACCCTGTCTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACAAGCTATGCTAAGTGCAGAGCCTGGGGCCGGAGAGCTACTGCTACCAGAGTGGCTCAgtaaggcacttcagaagtacgatttcaacacaaaatcccctggatctctc Alignment from GeneWise AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactgtacgcacccctccccctggcctttcactgccaccagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATACCTCAGCTAAAGGCTCGCTCCCCACAGGATCTGGCCCAAGGGTCTGGAGCTGCGCTTTGCTTCTTCAACCCTCCCTTATCAGGAGATCTAGGCCCAACTAGACGAGAGAAATTCAAGAGGAGTTTGAAAGTGCGAGTGTCTACTGACACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGCACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGCGGGAAGGCTCAGTGGGGTATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCAGGT---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAGCCTCTACTCAGATCCATGAGTTCTGCTTTCTGCTCTTTGCTGATACCAGAACGGCAGGTTGACTGGGCAGCCACAACACTGATGCAAAATCGATGCACAGTTGTGGGTCAACTGGTCCAAGACACCCTGTCTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACAAGCTATGCTAAGTGCAGAGCCTGGGGCCGGAGAGCTACTGCTACCAGAGTGGCTCAgtaaggcacttcagaagtacgatttcaacacaaaatcccctggatctctc #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGT-CGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccaggaTTACAGGCACCATTTCATGGTCCGTGGCT-GTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccaggaTTACAGGCACCATTTCATGGTCCGTGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccagGATTACAGGCACCATTTCATGGTCCGTGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGA cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccagGATTACAGGCACCATTTCATGGTCCGTGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAGGACGATGCCCAGGAACCATTAGAGAGA---GACTT----GGTAAAAATGA--AGAGATTGTACAAG-----TGAGAGAATTTTGCACAAg Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccagGATTACAGGCACCATTTCATGGTCCGTGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGA------------------------------------------------------------GGACGATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from Exonerate_protein2genome CGC-GGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCG------CCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC CGTAGGTCTTGAGGTCCATGGGTTTGACCATGTCCTCCCTTCCACTCCAGGATTACAGGCACCATTTCATGGTCCGTGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAGGACGATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from Exonerate_coding2genome cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccaggattacaggcaccatttcatggtccgtggctgtggggtgaggaggtagctgtgccaccagagtttgcaggatttgtgatggtgacagaggacgatgcccaggaaccattagagagagacttggtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccagGATTACAGGCACCATTTCATGGTCCGTGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc #### Rpp30_ID7088_8 --> 0 - 0 Original Alignment AATGTAATTCTG-TCCAGTGCTGCAGAAAGG tagtatgcaactggtcattgatttctctctctgccttcctcttgatgcagAATGTTATTCTGCTCAA-TACGGCAGCGAGAgtactattagggcactggcagtggttaggacacttaacataggcaactct Alignment from CESAR AATGTAATTCTGTCCAGTGCTGCAGAAAGG tagtatgcaactggtcattgatttctctctctgccttcctcttgatgcagAATGTTATTCTGCTCAATACGGCAGCGAGAgtactattagggcactggcagtggttaggacacttaacataggcaactct Alignment from Spaln_aa2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tagtatgcaactggtcattgatttctctctctgccttcctcttgatgcagAATGTTATTCTGCTCAATACGGCAGCGAGAgtactattagggcactggcagtggttaggacacttaacataggcaactct Alignment from Spaln_nt2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tagtatgcaactggtcattgatttctctctctgccttcctcttgatgcagAATGTTATTCTGCTCAATACGGCAGCGAGAgtactattagggcactggcagtggttaggacacttaacataggcaactct Alignment from Pairagon AATGTAATTCTGTCCAGTGCTGCAGAAAGG tagtatgcaactggtcattgatttctctctctgccttcctcttgatgcagAATGTTATTCTGCTCAATACGGCAGCGAGAgtactattagggcactggcagtggttaggacacttaacataggcaactct Alignment from Exonerate_protein2genome tagtatgcaactggtcattgatttctctctctgccttcctcttgatgcagaatgttattctgctcaatacggcagcgagagtactattagggcactggcagtggttaggacacttaacataggcaactct Alignment from Exonerate_coding2genome tagtatgcaactggtcattgatttctctctctgccttcctcttgatgcagaatgttattctgctcaatacggcagcgagagtactattagggcactggcagtggttaggacacttaacataggcaactct Alignment from GeneWise tagtatgcaactggtcattgatttctctctctgccttcctcttgatgcagaatgttattctgctcaatacggcagcgagagtactattagggcactggcagtggttaggacacttaacataggcaactct #### Rpp30_ID7089_9 --> 0 - 2 Original Alignment CCTTTGGAAATA-AGAGGACCATATGACGTGGCAAACtt gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACCGAGGACCAT-TGATGTGGCCAATttgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from CESAR CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACtt gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACCGAGGACCATTGATGTGGCCAATttgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Spaln_aa2Genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACCGAGGACCATTGATGTGGCCAATTTgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Spaln_nt2Genome CCTTTGGAAATAA-GAGGACCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACCGAGGACCAT-TGATGTGGCCAATTTgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Pairagon CCTTTGGAAATA-AGAGGACCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACCGAGGACCAT-TGATGTGGCCAATTTgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Exonerate_protein2genome gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagcccctggaaataccgaggaccattgatgtggccaatttgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Exonerate_coding2genome gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagcccctggaaataccgaggaccattgatgtggccaatttgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from GeneWise gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagcccctggaaataccgaggaccattgatgtggccaatttgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGAT-GACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ataggggttttcagtaccccagatcattctaacctgtcttcattctctagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACGCGACAAACTCCAGTCGGTACCCCTGATCGACACACCAC-GACTGAGTGCGCCAACCAAGCCTTCTTGgtaaagggcggaattatgagaaagaagggggttgtgccacttggctttac Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ataggggttttcagtaccccagatcattctaacctgtcttcattctctagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACGCGACAAACTCCAGTCGGTACCCCTGATCGACACACCACGACTGAGTGCGCCAACCAAGCCTTCTTGgtaaagggcggaattatgagaaagaagggggttgtgccacttggctttac Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ataggggttttcagtaccccagatcattctaacctgtcttcattctctagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACGCGACAAACTCCAGTCGGTACCCCTGATCGACACACCACGACTGAGTGCGCCAACCAAGCCTTCTTGgtaaagggcggaattatgagaaagaagggggttgtgccacttggctttac Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGAT-GACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ataggggttttcagtaccccagatcattctaacctgtcttcattctctagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACGCGACAAACTCCAGTCGGTACCCCTGATCGACACA-CCACGACTGAGTGCGCCAACCAAGCCTTCTTGgtaaagggcggaattatgagaaagaagggggttgtgccacttggctttac Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGAT-----------GACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ataggggttttcagtaccccagatcattctaacctgtcttcattctctagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACGCGACAAACTCCAGTCGGTACCCCTGATCGACACACCACGAC-----------TGAGTGCGCCAACCAAGCCTTCTTGgtaaagggcggaattatgagaaagaagggggttgtgccacttggctttac Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ataggggttttcagtaccccagatcattctaacctgtcttcattctctagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACGCGACAAACTCCAGTCGGTACCCCTGATCGACACACCACGACTGAGTGCGCCAACCAAGCCTTCTTGgtaaagggcggaattatgagaaagaagggggttgtgccacttggctttac Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ataggggttttcagtaccccagatcattctaacctgtcttcattctctagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACGCGACAAACTCCAGTCGGTACCCCTGATCGACACACCACGACTGAGTGCGCCAACCAAGCCTTCTTGgtaaagggcggaattatgagaaagaagggggttgtgccacttggctttac Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ataggggttttcagtaccccagatcattctaacctgtcttcattctctagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACGCGACAAACTCCAGTCGGTACCCCTGATCGACACACCACGACTGAGTGCGCCAACCAAGCCTTCTTGgtaaagggcggaattatgagaaagaagggggttgtgccacttggctttac #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGAC-CCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCCTCTCT-CAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from CESAR AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCCTCTCTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCCTCTCTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCCTCTCTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Pairagon AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCCTCTCTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCCTCTCTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Exonerate_coding2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCCTCTCTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from GeneWise AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCCTCTCTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGG-AGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG ggataccacaaagggactacaactgtgtatgtatggtcttttgcctacaggGTGCCAGAGATTCTATTGCGCACGGGTCATAATCGGGCAGTGGACTGGTGGCAGCC-TGGGGCTCTAATGTATGACATGCTCACTGAATCAgtagggccctttcattggtggtattggagggagactatatggagctcttc Alignment from CESAR gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG ggataccacaaagggactacaactgtgtatgtatggtcttttgcctacaggGTGCCAGAGATTCTATTGCGCACGGGTCATAATCGGGCAGTGGACTGGTGGCAGCCTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtagggccctttcattggtggtattggagggagactatatggagctcttc Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG ggataccacaaagggactacaactgtgtatgtatggtcttttgcctacagGGTGCCAGAGATTCTATTGCGCACGGGTCATAATCGGGCAGTGGACTGGTGGCAGCCTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtagggccctttcattggtggtattggagggagactatatggagctcttc Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG ggataccacaaagggactacaactgtgtatgtatggtcttttgcctacagGGTGCCAGAGATTCTATTGCGCACGGGTCATAATCGGGCAGTGGACTGGTGGCAGCCTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtagggccctttcattggtggtattggagggagactatatggagctcttc Alignment from Pairagon GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGG-AGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG ggataccacaaagggactacaactgtgtatgtatggtcttttgcctacagGGTGCCAGAGATTCTATTGCGCACGGGTCATAATCGGGCAGTGGACTGGTGGCAGCCTGGG-GCTCTAATGTATGACATGCTCACTGAATCAgtagggccctttcattggtggtattggagggagactatatggagctcttc Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG ggataccacaaagggactacaactgtgtatgtatggtcttttgcctacagGGTGCCAGAGATTCTATTGCGCACGGGTCATAATCGGGCAGTGGACTGGTGGCAGCCTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtagggccctttcattggtggtattggagggagactatatggagctcttc Alignment from Exonerate_coding2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG ggataccacaaagggactacaactgtgtatgtatggtcttttgcctacagGGTGCCAGAGATTCTATTGCGCACGGGTCATAATCGGGCAGTGGACTGGTGGCAGCCTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtagggccctttcattggtggtattggagggagactatatggagctcttc Alignment from GeneWise GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG ggataccacaaagggactacaactgtgtatgtatggtcttttgcctacagGGTGCCAGAGATTCTATTGCGCACGGGTCATAATCGGGCAGTGGACTGGTGGCAGCCTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtagggccctttcattggtggtattggagggagactatatggagctcttc #### Rps6kb2_ID374_8 --> 2 - 2 Original Alignment gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCAC-ACCTTCTGTGGCACCATTGAGTACat accttcagttttgccagtgtcaattcattttgtttccgttctgcacacaggtCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCACTATCAACCATCACTTTCT-TGGCACCATAGAGTACatgtgagctttgagagggataccacaaagggactacaactgtgttatttcac Alignment from CESAR gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACat accttcagttttgccagtgtcaattcattttgtttccgttctgcacacaggtCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCACTATCAACCATCACTTTCTTGGCACCATAGAGTACatgtgagctttgagagggataccacaaagggactacaactgtgtatgtatgg Alignment from Spaln_aa2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT accttcagttttgccagtgtcaattcattttgtttccgttctgcacacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCACTATCAACCATCACTTTCTTGGCACCATAGAGTACATgtgagctttgagagggataccacaaagggactacaactgtgttatttcac Alignment from Spaln_nt2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCA-CACCTTCTGTGGCACCATTGAGTACAT accttcagttttgccagtgtcaattcattttgtttccgttctgcacacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCACTATCAACCATCACTTTCT-TGGCACCATAGAGTACATgtgagctttgagagggataccacaaagggactacaactgtgttatttcac Alignment from Pairagon GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT accttcagttttgccagtgtcaattcattttgtttccgttctgcacacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCACTATCAACCATCACTTTCTTGGCACCATAGAGTACATgtgagctttgagagggataccacaaagggactacaactgtgttatttcac Alignment from Exonerate_protein2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT accttcagttttgccagtgtcaattcattttgtttccgttctgcacacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCACTATCAACCATCACTTTCTTGGCACCATAGAGTACATgtgagctttgagagggataccacaaagggactacaactgtgttatttcac Alignment from Exonerate_coding2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT accttcagttttgccagtgtcaattcattttgtttccgttctgcacacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCACTATCAACCATCACTTTCTTGGCACCATAGAGTACATgtgagctttgagagggataccacaaagggactacaactgtgttatttcac Alignment from GeneWise GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT accttcagttttgccagtgtcaattcattttgtttccgttctgcacacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCACTATCAACCATCACTTTCTTGGCACCATAGAGTACATgtgagctttgagagggataccacaaagggactacaactgtgttatttcac #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAAC-ATCATGCTCAGCAGCCAGg tgtgtagtagatattaagctctgcctccaccatgccttacatcccaccagtTTCTACCTTGCAGAGATCACTCTGGCACTAGGCCATCTCCATTTCCATAGTATCATTTACCGTGACCGCAAGCCTGGAAACCATAA-GCTCACCAGTCAGggtgagggagatgcgagcatccctgtgtgttaaaccttcagttttgccagt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg tgtgtagtagatattaagctctgcctccaccatgccttacatcccaccagtTTCTACCTTGCAGAGATCACTCTGGCACTAGGCCATCTCCATTTCCATAGTATCATTTACCGTGACCGCAAGCCTGGAAACCATAAGCTCACCAGTCAGggtgagggagatgcgagcatccctgtgtgttaaaccttcagttttgccagt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtagtagatattaagctctgcctccaccatgccttacatcccaccagTTTCTACCTTGCAGAGATCACTCTGGCACTAGGCCATCTCCATTTCCATAGTATCATTTACCGTGACCGCAAGCCTGGAAACCATAAGCTCACCAGTCAGGgtgagggagatgcgagcatccctgtgtgttaaaccttcagttttgccagt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtagtagatattaagctctgcctccaccatgccttacatcccaccagTTTCTACCTTGCAGAGATCACTCTGGCACTAGGCCATCTCCATTTCCATAGTATCATTTACCGTGACCGCAAGCCTGGAAACCATAAGCTCACCAGTCAGGgtgagggagatgcgagcatccctgtgtgttaaaccttcagttttgccagt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtagtagatattaagctctgcctccaccatgccttacatcccaccagTTTCTACCTTGCAGAGATCACTCTGGCACTAGGCCATCTCCATTTCCATAGTATCATTTACCGTGACCGCAAGCCTGGAAACCATAAGCTCACCAGTCAGGgtgagggagatgcgagcatccctgtgtgttaaaccttcagttttgccagt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtagtagatattaagctctgcctccaccatgccttacatcccaccagTTTCTACCTTGCAGAGATCACTCTGGCACTAGGCCATCTCCATTTCCATAGTATCATTTACCGTGACCGCAAGCCTGGAAACCATAAGCTCACCAGTCAGGgtgagggagatgcgagcatccctgtgtgttaaaccttcagttttgccagt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtagtagatattaagctctgcctccaccatgccttacatcccaccagTTTCTACCTTGCAGAGATCACTCTGGCACTAGGCCATCTCCATTTCCATAGTATCATTTACCGTGACCGCAAGCCTGGAAACCATAAGCTCACCAGTCAGGgtgagggagatgcgagcatccctgtgtgttaaaccttcagttttgccagt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtagtagatattaagctctgcctccaccatgccttacatcccaccagTTTCTACCTTGCAGAGATCACTCTGGCACTAGGCCATCTCCATTTCCATAGTATCATTTACCGTGACCGCAAGCCTGGAAACCATAAGCTCACCAGTCAGGgtgagggagatgcgagcatccctgtgtgttaaaccttcagttttgccagt #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTG-AGTGTACTGGGCAAGGGGGGCTATGGCAAG tagggcaccatataagattttgtctctcatgtaattttgttgatttgtaggACAGTGGGACACTATGACGAAGTCGAATTGACAGAGAGA------AACCTTGATCCTGAACGTATAGGGCCCCACTGCTTTGAGTTACTCCAGTGTCC-GGTCAAAGGAGGTTATGGAAAGgttaggtatcttacccctcccagtgacatcagctctagtgcaagtgtaag Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG tagggcaccatataagattttgtctctcatgtaattttgttgatttgtaggACAGTGGGACACTATGACGAAGTCGAATTGACAGAGAGA------AACCTTGATCCTGAACGTATAGGGCCCCACTGCTTTGAGTTACTCCAGTGTCCGGTCAAAGGAGGTTATGGAAAGgttaggtatcttacccctcccagtgacatcagctctagtgcaagtgtaag Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG tagggcaccatataagattttgtctctcatgtaattttgttgatttgtagGACAGTGGGACACTATGACGAAGTCGAATTGACAGAGAGA------AACCTTGATCCTGAACGTATAGGGCCCCACTGCTTTGAGTTACTCCAGTGTCCGGTCAAAGGAGGTTATGGAAAGgttaggtatcttacccctcccagtgacatcagctctagtgcaagtgtaag Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTG-AGTGTACTGGGCAAGGGGGGCTATGGCAAG tagggcaccatataagattttgtctctcatgtaattttgttgatttgtagGACAGTGGGACACTATGACGAAGTCGAATTGACAGAGAGAA------ACCTTGATCCTGAACGTATAGGGCCCCACTGCTTTGAGTTACTCCAGTGT-CCGGTCAAAGGAGGTTATGGAAAGgttaggtatcttacccctcccagtgacatcagctctagtgcaagtgtaag Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACT-GAGTGTACTGGGCAAGGGGGGCTATGGCAAG tagggcaccatataagattttgtctctcatgtaattttgttgatttgtagGACAGTGGGACACTATGACGAAGTCGAATTGACAGAGAG------AAACCTTGATCCTGAACGTATAGGGCCCCACTGCTTTGAGTTACTCCAGTGT-CCGGTCAAAGGAGGTTATGGAAAGgttaggtatcttacccctcccagtgacatcagctctagtgcaagtgtaag Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG tagggcaccatataagattttgtctctcatgtaattttgttgatttgtagGACAGTGGGACACTATGACGAAGTCGAATTGACAGAGAGA------AACCTTGATCCTGAACGTATAGGGCCCCACTGCTTTGAGTTACTCCAGTGTCCGGTCAAAGGAGGTTATGGAAAGgttaggtatcttacccctcccagtgacatcagctctagtgcaagtgtaag Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG tagggcaccatataagattttgtctctcatgtaattttgttgatttgtagGACAGTGGGACACTATGACGAAGTCGAATTGACAGAGAGA------AACCTTGATCCTGAACGTATAGGGCCCCACTGCTTTGAGTTACTCCAGTGTCCGGTCAAAGGAGGTTATGGAAAGgttaggtatcttacccctcccagtgacatcagctctagtgcaagtgtaag Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG tagggcaccatataagattttgtctctcatgtaattttgttgatttgtagGACAGTGGGACACTATGACGAAGTCGAATTGACAGAGAGA------AACCTTGATCCTGAACGTATAGGGCCCCACTGCTTTGAGTTACTCCAGTGTCCGGTCAAAGGAGGTTATGGAAAGgttaggtatcttacccctcccagtgacatcagctctagtgcaagtgtaag #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGT-GGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctagggctgggtagcctcattatttgcttctccttttcctgttaacagcATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------TTGGTG------AGGAGCCGATCATGG---AAGGATGGAGGTCGGT---GCGC-TCTCAATTTC------CCAAAAGTAGCACATCGTGTCCAGggtaagaaggggtaaggttacccccctttgttgatggggtcatgggatagg Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctagggctgggtagcctcattatttgcttctccttttcctgttaacagcATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------TTGGTG------AGGAGCCGATCATGG---AAGGATGGAGGTCGGTGC---GCTCTCAATTTC------CCAAAAGTAGCACATCGTGTCCAGggtaagaaggggtaaggttacccccctttgttgatggggtcatgggatagg Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctagggctgggtagcctcattatttgcttctccttttcctgttaacagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------TTGGTG------AGGAGCCGATCATGG---AAGGATGGAGGTCGGTGC---GCTCTCAATTTC------CCAAAAGTAGCACATCGTGTCCAGGgtaagaaggggtaaggttacccccctttgttgatggggtcatgggatagg Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctagggctgggtagcctcattatttgcttctccttttcctgttaacagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGC------AATTGG------TGAGGAGCCGATCATG---GAAGGATGGAGGT--CGGTGCG-CTCTCAATTTC------CCAAAAGTAGCACATCGTGTCCAGGgtaagaaggggtaaggttacccccctttgttgatggggtcatgggatagg Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctagggctgggtagcctcattatttgcttctccttttcctgttaacagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA-------------------------------------------------------------------------------------------------TTGgtgaggagccgatcatggaaggatggaggtcggtgcgctctcaatttcccaaaagtagcacatcgtgtccagggtaagaaggggtaaggttacccccctttgttgatggggtcatgggatagg Alignment from Exonerate_protein2genome TGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctagggctgggtagcctcattatttgcttctccttttcctgttaacagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAATTGGTGAGGAGCCGATCATGGAAGGATGGAGGTCGGTGCGCTCTCAATTTCCCAAAAGTAGCACATCGTGTCCAGGgtaagaaggggtaaggttacccccctttgttgatggggtcatgggatagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctagggctgggtagcctcattatttgcttctccttttcctgttaacagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAATTG------------GTGAGGAGCCGATCATGG------AAGGATGGAGGTCGGTGCGCTCTCAATTTC------CCAAAAGTAGCACATCGTGTCCAGGgtaagaaggggtaaggttacccccctttgttgatggggtcatgggatagg #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTC-ATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCCATACATA-TGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCCATACATATGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCCATACATATGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTC-ATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCCC---TAAAATGTCTCCATACATA-TGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Pairagon CCCCGTTTGAAGTGCCT-CATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCCC---TAAAATGTCTCCATACATA-TGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCCATACATATGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Exonerate_coding2genome gaatggttagacaaacagccaggggggcttttttaatatttattttgtagcccctaaaatgtctccatacatatgtgaaaacactgttagctgaacatgaagaattcatagctgctttgatccctgaggtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCCATACATATGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg #### Rrp12_ID8307_16 --> 2 - 0 Original Alignment caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCG-AAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCCCAAGATT---G-TACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from CESAR caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGAT---ACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCCCAA------GATTGTACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Spaln_aa2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCCAAGATTGT---ACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Spaln_nt2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCG-AAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCCCAAGATT----GTACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Pairagon CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGT-CGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCCCAAGATT----GTACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Exonerate_protein2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCCAAGATTGT---ACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Exonerate_coding2genome ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaatggatctagctcaagccacagtggagtcccaagattgtacactccagtggcaagtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from GeneWise -------ATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAA ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaatggatctagctcaagccacagtggagtcccaagattgtacactccagtggcaagtgagTGCCAACTGGGAACTGACAAGGGCTGAGCATATCTGTGAAGTA-- #### Rrp12_ID8308_15 --> 1 - 1 Original Alignment gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACC-AGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAg cagggggctggttcaataagctttcgcttttttttcgcatttaattttaggGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCCGGCTTG-TTTCTTCACCACTTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAggtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from CESAR gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAg cagggggctggttcaataagctttcgcttttttttcgcatttaattttaggGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCCGGCTTGTTTCTTCACCACTTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAggtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Spaln_aa2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCCGGCTTGTTTCTTCACCACTTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Spaln_nt2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTT---TCAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCCGGCTTGTTTCTTCACCACTTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Pairagon GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCCGGCTTGTTTCTTCACCACTTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Exonerate_protein2genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCCGGCTTGTTTCTTCACCACTTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCCGGCTTGTTTCTTCACCACTTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAG-GCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ataatatgtcaaaattggcagcgctgactgagcctgtgcttctccttaagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGAACGGTGGCATTGCTCCAGGAGAAGCAGAAGCGCCCAAAAGA-ACCTCAAATTGTACTCAGTGGCAGTGGCAAGAGCATGAATgcgtgagtgggtaggagttggcagcttggatggtgtgctgaataattagtga Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ataatatgtcaaaattggcagcgctgactgagcctgtgcttctccttaagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGAACGGTGGCATTGCTCCAGGAGAAGCAGAAGCGCCCAAAAGAACCTCAAATTGTACTCAGTGGCAGTGGCAAGAGCATGAATgcgtgagtgggtaggagttggcagcttggatggtgtgctgaataattagtga Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcaaaattggcagcgctgactgagcctgtgcttctccttaagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGAACGGTGGCATTGCTCCAGGAGAAGCAGAAGCGCCCAAAAGAACCTCAAATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCgtgagtgggtaggagttggcagcttggatggtgtgctgaataattagtga Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcaaaattggcagcgctgactgagcctgtgcttctccttaagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGAACGGTGGCATTGCTCCAGGAGAAGCAGAAGCGCCCAAAAGAACCTCAAATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCgtgagtgggtaggagttggcagcttggatggtgtgctgaataattagtga Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAG-GCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcaaaattggcagcgctgactgagcctgtgcttctccttaagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGAACGGTGGCATTGCTCCAGGAGAAGCAGAAGCGCCCAAAAGA-ACCTCAAATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCgtgagtgggtaggagttggcagcttggatggtgtgctgaataattagtga Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcaaaattggcagcgctgactgagcctgtgcttctccttaagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGAACGGTGGCATTGCTCCAGGAGAAGCAGAAGCGCCCAAAAGAACCTCAAATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCGtgagtgggtaggagttggcagcttggatggtgtgctgaataattagtga Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcaaaattggcagcgctgactgagcctgtgcttctccttaagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGAACGGTGGCATTGCTCCAGGAGAAGCAGAAGCGCCCAAAAGAACCTCAAATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCGtgagtgggtaggagttggcagcttggatggtgtgctgaataattagtga Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcaaaattggcagcgctgactgagcctgtgcttctccttaagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGAACGGTGGCATTGCTCCAGGAGAAGCAGAAGCGCCCAAAAGAACCTCAAATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCGtgagtgggtaggagttggcagcttggatggtgtgctgaataattagtga #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTAC-GGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATCGAGTTGG-GGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATCGAGTTGGGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATCGAGTTGGGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTA-CGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATCGAGTTGG-GGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTA-CGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATCGAGTTGGG-GGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATCGAGTTGGGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATCGAGTTGGGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATCGAGTTGGGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAG-CTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagaaGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCTGCGGCAACCTCCAGCAAC-ACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagaaGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCTGCGGCAACCTCCAGCAACACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCTGCGGCAACCTCCAGCAACACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCTGCGGCAACCTCCAGCAACACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAG-CTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCTGCGGCAACCTCCAGCAAC-ACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCTGCGGCAACCTCCAGCAACACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCTGCGGCAACCTCCAGCAACACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCTGCGGCAACCTCCAGCAACACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTG-GTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagggGTACTCCAGGATGGAGAAGATGTGCTGCGTGAATG-GAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaatcttctactgctgccctaacag Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagggGTACTCCAGGATGGAGAAGATGTGCTGCGTGAATGGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaattctgagcctgggcccttttag Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGCGTGAATGGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaatcttctactgctgccctaacag Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGCGTGAATGGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaatcttctactgctgccctaacag Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTG-GTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGCGTGAATG-GAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaatcttctactgctgccctaacag Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGCGTGAATGGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaatcttctactgctgccctaacag Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGCGTGAATGGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaatcttctactgctgccctaacag Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGCGTGAATGGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaatcttctactgctgccctaacag #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGG-GAGACTGTGGTCCTCACCCTCAAGGACAAAg acagatccagcttgtaccctcgtttctgtggtttcctcattgttttgtagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAGGGGCGAGACTGTGG-TCTCACCCTCAAAGACAAAggtatgcggtatctgggagatgcttaatggggtagaatatgactgctgtgg Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGG-GAGACTGTGGTCCTCACCCTCAAGGACAAAg acagatccagcttgtaccctcgtttctgtggtttcctcattgttttgtagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAGGGGCGAGACTGTGG-TCTCACCCTCAAAGACAAAggtatgcggtatctgggagatgcttaatggggtagaatatgactggtatgt Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagatccagcttgtaccctcgtttctgtggtttcctcattgttttgtagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAGGGGCGAGACTGTGGTCTCACCCTCAAAGACAAAGgtatgcggtatctgggagatgcttaatggggtagaatatgactgctgtgg Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGG-GAGACTGTGGTCCTCACCCTCAAGGACAAAG acagatccagcttgtaccctcgtttctgtggtttcctcattgttttgtagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAGGGGCGAGACTGTGGT-CTCACCCTCAAAGACAAAGgtatgcggtatctgggagatgcttaatggggtagaatatgactgctgtgg Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGG-GAGACTGTGGTCCTCACCCTCAAGGACAAAG acagatccagcttgtaccctcgtttctgtggtttcctcattgttttgtagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAGGGGCGAGACTGTGGT-CTCACCCTCAAAGACAAAGgtatgcggtatctgggagatgcttaatggggtagaatatgactgctgtgg Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagatccagcttgtaccctcgtttctgtggtttcctcattgttttgtagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAGGGGCGAGACTGTGGTCTCACCCTCAAAGACAAAGgtatgcggtatctgggagatgcttaatggggtagaatatgactgctgtgg Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagatccagcttgtaccctcgtttctgtggtttcctcattgttttgtagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAGGGGCGAGACTGTGGTCTCACCCTCAAAGACAAAGgtatgcggtatctgggagatgcttaatggggtagaatatgactgctgtgg Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagatccagcttgtaccctcgtttctgtggtttcctcattgttttgtagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAGGGGCGAGACTGTGGTCTCACCCTCAAAGACAAAGgtatgcggtatctgggagatgcttaatggggtagaatatgactgctgtgg #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATGGACCAAGAGTTT-GGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTCGGTGTGAGCA-ATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from CESAR GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTCGGTGTGAGCAATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTCGGTGTGAGCAATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTT-GGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTCGGTGTGAGCA-ATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Pairagon GCTAAGCTACTAGAGGAGATGGACCAAGAGTTT-GGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTCGGTGTGAGCAA-TTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTCGGTGTGAGCAATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTCGGTGTGAGCAATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTCGGTGTGAGCAATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACA-CTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccaagggtggggaagatggattatctggtaatctctttcagtAAAGTTAAAACTCCTGGGAG-AGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAAAGAAGAGGgtacaaacacaaggttcttcaagagcaccatctacccgttaatttaccca Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccaagggtggggaagatggattatctggtaatctctttcagtAAAGTTAAAACTCCTGGGAGAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAAAGAAGAGGgtacaaacacaaggttcttcaagagcaccatctacccgttaatttaccca Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccaagggtggggaagatggattatctggtaatctctttcagTAAAGTTAAAACTCCTGGGAGAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAAAGAAGAGGgtacaaacacaaggttcttcaagagcaccatctacccgttaatttaccca Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccaagggtggggaagatggattatctggtaatctctttcagTAAAGTTAAAACTCCTGGGAGAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAAAGAAGAGGgtacaaacacaaggttcttcaagagcaccatctacccgttaatttaccca Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccaagggtggggaagatggattatctggtaatctctttcagTAAAGTTAAAACTCCTGGGAGAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAAAGAAGAGGgtacaaacacaaggttcttcaagagcaccatctacccgttaatttaccca Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccaagggtggggaagatggattatctggtaatctctttcagTAAAGTTAAAACTCCTGGGAGAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAAAGAAGAGGgtacaaacacaaggttcttcaagagcaccatctacccgttaatttaccca Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccaagggtggggaagatggattatctggtaatctctttcagTAAAGTTAAAACTCCTGGGAGAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAAAGAAGAGGgtacaaacacaaggttcttcaagagcaccatctacccgttaatttaccca Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccaagggtggggaagatggattatctggtaatctctttcagTAAAGTTAAAACTCCTGGGAGAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAAAGAAGAGGgtacaaacacaaggttcttcaagagcaccatctacccgttaatttaccca #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCT-CCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCCAGCAC-AACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAATGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCCAGCACAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAATGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCCAGCACAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAATGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCC-AGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCCAGCA-CAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAATGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCCAGCACAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAATGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCCAGCACAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAATGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCCAGCACAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAATGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCCAGCACAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAATGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG gttgttaatgactagtaacccctgcccaattctctgctgtggttctccaggaCCCCAGGACTCATGGAAAGTTACCCCTGCCTCCGAGCGGAAACC-TCAACGGAAGAAAgttagtgcctttccataaccattaacctattccatccccatgttcttaca Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgttaatgactagtaacccctgcccaattctctgctgtggttctccaggaCCCCAGGACTCATGGAAAGTTACCCCTGCCTCCGAGCGGAAACCTCAACGGAAGAAAgttagtgcctttccataaccattaacctattccatccccatgttcttaca Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgttaatgactagtaacccctgcccaattctctgctgtggttctccagGACCCCAGGACTCATGGAAAGTTACCCCTGCCTCCGAGCGGAAACCTCAACGGAAGAAAgttagtgcctttccataaccattaacctattccatccccatgttcttaca Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG gttgttaatgactagtaacccctgcccaattctctgctgtggttctccagGACCCCAGGACTCATGGAAAGTTACCCCTGCCTCCGAGCGGAAACCT-CAACGGAAGAAAgttagtgcctttccataaccattaacctattccatccccatgttcttaca Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgttaatgactagtaacccctgcccaattctctgctgtggttctccagGACCCCAGGACTCATGGAAAGTTACCCCTGCCTCCGAGCGGAAACCTCAACGGAAGAAAgttagtgcctttccataaccattaacctattccatccccatgttcttaca Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgttaatgactagtaacccctgcccaattctctgctgtggttctccagGACCCCAGGACTCATGGAAAGTTACCCCTGCCTCCGAGCGGAAACCTCAACGGAAGAAAgttagtgcctttccataaccattaacctattccatccccatgttcttaca Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgttaatgactagtaacccctgcccaattctctgctgtggttctccagGACCCCAGGACTCATGGAAAGTTACCCCTGCCTCCGAGCGGAAACCTCAACGGAAGAAAgttagtgcctttccataaccattaacctattccatccccatgttcttaca Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgttaatgactagtaacccctgcccaattctctgctgtggttctccagGACCCCAGGACTCATGGAAAGTTACCCCTGCCTCCGAGCGGAAACCTCAACGGAAGAAAgttagtgcctttccataaccattaacctattccatccccatgttcttaca #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCC---TTCTTTGATGAGCTGATACCT-CAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg ggcttaagagatgcacttcacacatgatcctctgtggttcattcatacagGCCACCAAACACACTGCTAGGGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGCTAATACCTCGAAAACA-GACCCCCTGGGTGATCCCCACTACAGAAggtaagctgttcctgtgcaaggggatatcactgtataggcataattgggta Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg ggcttaagagatgcacttcacacatgatcctctgtggttcattcatacagGCCACCAAACACACTGCTAGGGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGCTAATACCTCGAAAACAGACCCCCTGGGTGATCCCCACTACAGAAggtaagctgttcctgtgcaaggggatatcactgtataggcataattgggta Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaagagatgcacttcacacatgatcctctgtggttcattcatacagGCCACCAAACACACTGCTAGGGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGCTAATACCTCGAAAACAGACCCCCTGGGTGATCCCCACTACAGAAGgtaagctgttcctgtgcaaggggatatcactgtataggcataattgggta Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCC---TTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaagagatgcacttcacacatgatcctctgtggttcattcatacagGCCACCAAACACACTGCTAGGGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGCTAATACCTCGAAAACAGACCCCCTGGGTGATCCCCACTACAGAAGgtaagctgttcctgtgcaaggggatatcactgtataggcataattgggta Alignment from Pairagon GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCT---CAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaagagatgcacttcacacatgatcctctgtggttcattcatacagGCCACCAAACACACTGCTAGGGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGCTAATACCTCGAAAACAGACCCCCTGGGTGATCCCCACTACAGAAGgtaagctgttcctgtgcaaggggatatcactgtataggcataattgggta Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaagagatgcacttcacacatgatcctctgtggttcattcatacagGCCACCAAACACACTGCTAGGGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGCTAATACCTCGAAAACAGACCCCCTGGGTGATCCCCACTACAGAAGgtaagctgttcctgtgcaaggggatatcactgtataggcataattgggta Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaagagatgcacttcacacatgatcctctgtggttcattcatacagGCCACCAAACACACTGCTAGGGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGCTAATACCTCGAAAACAGACCCCCTGGGTGATCCCCACTACAGAAGgtaagctgttcctgtgcaaggggatatcactgtataggcataattgggta Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCC---TTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaagagatgcacttcacacatgatcctctgtggttcattcatacagGCCACCAAACACACTGCTAGGGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGCTAATACCTCGAAAACAGACCCCCTGGGTGATCCCCACTACAGAAGgtaagctgttcctgtgcaaggggatatcactgtataggcataattgggta #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGT-GCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctaggAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAAGCTGTCTTT---AGCCCCTTTATGGAGTACCAGGATGGTCGCCCGAT-TTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctaggAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAAGCTGTCTTT---AGCCCCTTTATGGAGTACCAGGATGGTCGCCCGATTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAAGCTGTCTTTAGC---CCCTTTATGGAGTACCAGGATGGTCGCCCGATTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAAGCTGTCTTTA---GCCCCTTTATGGAGTACCAGGATGGTCGCCCGATTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAAGCTGTCTTTA---GCCCCTTTATGGAGTACCAGGATGGTCGCCCGATTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAAGCTGTCTTTAGC---CCCTTTATGGAGTACCAGGATGGTCGCCCGATTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAAGCTGTCTTTAGC---CCCTTTATGGAGTACCAGGATGGTCGCCCGATTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAAGCTGTCTTTAGC---CCCTTTATGGAGTACCAGGATGGTCGCCCGATTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCT-GGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagcaGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACA-CATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCT---GGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagcaGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACAC---ATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCT-GGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACAC-ATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTCGGAATGCACACATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta #### Sf1_ID1667_8 --> 1 - 2 Original Alignment gATCTTAAGGCCCTGGCAGAGCTCAGAG-ACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGag ttaagttttactgaagggttatggagtgcactaatgtatttgtcttgtagaATCTTGAGGCCCTGGCAAAGCTCAGAGCACCCGGACTA-TACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGaggtatccccaacctagaagacctggctactgcacaggttgataagaggtgg Alignment from CESAR gATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGag ttaagttttactgaagggttatggagtgcactaatgtatttgtcttgtagaATCTTGAGGCCCTGGCAAAGCTCAGAGCACCCGGACTATACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGaggtatccccaacctagaagacctggctactgcacaggttgataagaggtgg Alignment from Spaln_aa2Genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG ttaagttttactgaagggttatggagtgcactaatgtatttgtcttgtagAATCTTGAGGCCCTGGCAAAGCTCAGAGCACCCGGACTATACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtatccccaacctagaagacctggctactgcacaggttgataagaggtgg Alignment from Spaln_nt2Genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG ttaagttttactgaagggttatggagtgcactaatgtatttgtcttgtagAATCTTGAGGCCCTGGCAAAGCTCAGAGCACCCGGACTATACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtatccccaacctagaagacctggctactgcacaggttgataagaggtgg Alignment from Pairagon -----------------------------------------TGATAATAGGATCTTAAGGCCCTGGCAGAGCTCAGAG----------ACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG GTTTTACTGAAGGGTTATGGAGTGCACTAATGTATTTGTCTTG----TAGAATCTTGAGGCCCTGGCAAAGCTCAGAGCACCCGGACTA----------TACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtatccccaacctagaagacctggctactgcacaggttgataagaggtgg Alignment from Exonerate_protein2genome TAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG ttaagttttactgaagggttatggagtgcactaatgtatttgtcttgTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGCACCCGGACTATACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtatccccaacctagaagacctggctactgcacaggttgataagaggtgg Alignment from Exonerate_coding2genome TAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG ttaagttttactgaagggttatggagtgcactaatgtatttgtcttgTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGCACCCGGACTATACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtatccccaacctagaagacctggctactgcacaggttgataagaggtgg Alignment from GeneWise TAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG ttaagttttactgaagggttatggagtgcactaatgtatttgtcttgtagA---ATCTTGAGGCCCTGGCAAAGCTCAGAGCACCCGGACTATACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtatccccaacctagaagacctggctactgcacaggttgataagaggtgg #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTG-ACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCCACAGGTG-GCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCCACAGGTGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCCACAGGTGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCCACAGGTGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCT-GACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCCACAGGT-GGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCCACAGGTGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCCACAGGTGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCCACAGGTGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGTACGCCTGTGGGCTCT-GGGGTCTATCGCCTGCATCAAGGAAAAg aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagatCAGTATCTGGGAAGTACACCAGTGGCCTCTCGGGG-TTATCGCCTGCATCAAGGAAAAggtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from CESAR atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagatCAGTATCTGGGAAGTACACCAGTGGCCTCTCGGGGTTATCGCCTGCATCAAGGAAAAggtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCAGTGGCCTCTCGGGGTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCAGTGGCCTCTCGGGGTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCAGTGGCCTCTCGGGGTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCAGTGGCCTCTCGGGGTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCAGTGGCCTCTCGGGGTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCAGTGGCCTCTCGGGGTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcctcacatgatgacacctaacatcttttgtcttgtcacctagAAGAAGAAGCCAGAGGCCCCCAAACCTAT-ACGAAAGAAGTTGCGCCGTATGAACCGATTTACTGTTGCAGAATTAAAGCAAgtgagttctgggaaggtcaagccagctactccagctctgttcaacattca Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcctcacatgatgacacctaacatcttttgtcttgtcacctagAAGAAGAAGCCAGAGGCCCCCAAACCTATACGAAAGAAGTTGCGCCGTATGAACCGATTTACTGTTGCAGAATTAAAGCAAgtgagttctgggaaggtcaagccagctactccagctctgttcaacattca Alignment from Spaln_aa2Genome AAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcctcacatgatgacacctaacatcttttgtcttgtcacctagaagaagAAGCCAGAGGCCCCCAAACCTATACGAAAGAAGTTGCGCCGTATGAACCGATTTACTGTTGCAGAATTAAAGCAAgtgagttctgggaaggtcaagccagctactccagctctgttcaacattca Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcctcacatgatgacacctaacatcttttgtcttgtcacctagAAGAAGAAGCCAGAGGCCCCCAAACCTATACGAAAGAAGTTGCGCCGTATGAACCGATTTACTGTTGCAGAATTAAAGCAAgtgagttctgggaaggtcaagccagctactccagctctgttcaacattca Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcctcacatgatgacacctaacatcttttgtcttgtcacctagAAGAAGAAGCCAGAGGCCCCCAAACCTATACGAAAGAAGTTGCGCCGTATGAACCGATTTACTGTTGCAGAATTAAAGCAAgtgagttctgggaaggtcaagccagctactccagctctgttcaacattca Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcctcacatgatgacacctaacatcttttgtcttgtcacctagAAGAAGAAGCCAGAGGCCCCCAAACCTATACGAAAGAAGTTGCGCCGTATGAACCGATTTACTGTTGCAGAATTAAAGCAAgtgagttctgggaaggtcaagccagctactccagctctgttcaacattca Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcctcacatgatgacacctaacatcttttgtcttgtcacctagAAGAAGAAGCCAGAGGCCCCCAAACCTATACGAAAGAAGTTGCGCCGTATGAACCGATTTACTGTTGCAGAATTAAAGCAAgtgagttctgggaaggtcaagccagctactccagctctgttcaacattca Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcctcacatgatgacacctaacatcttttgtcttgtcacctagAAGAAGAAGCCAGAGGCCCCCAAACCTATACGAAAGAAGTTGCGCCGTATGAACCGATTTACTGTTGCAGAATTAAAGCAAgtgagttctgggaaggtcaagccagctactccagctctgttcaacattca #### Sf3b2_ID908_10 --> 0 - 0 Original Alignment CTAACTGATGATGTGAAGAAGGAA-AAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG attaaggcggcaaaccatattctgaatggcttgactctcacctgatccagCTAACGGATGAGGTAAGGAAAGAACAAAGAAA-AGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATGATGATAGCAGTGATGATGAACAAgtaagggcccttatgtgacagtgagttgtcgatagggggtttagcccact Alignment from CESAR CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG attaaggcggcaaaccatattctgaatggcttgactctcacctgatccagCTAACGGATGAGGTAAGGAAAGAACAAAGAAAAGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATGATGATAGCAGTGATGATGAACAAgtaagggcccttatgtgacagtgagttgtcgatagggggtttagcccact Alignment from Spaln_aa2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAGGAAAAG attaaggcggcaaaccatattctgaatggcttgactctcacctgatccagCTAACGGATGAGGTAAGGAAAGAACAAAGAAAAGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATGATGATAGCAGTGATGATGAACAAGTAAGGgcccttatgtgacagtgagttgtcgatagggggtttagcccact Alignment from Spaln_nt2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG attaaggcggcaaaccatattctgaatggcttgactctcacctgatccagCTAACGGATGAGGTAAGGAAAGAACAAAGAAAAGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATGATGATAGCAGTGATGATGAACAAgtaagggcccttatgtgacagtgagttgtcgatagggggtttagcccact Alignment from Pairagon CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG attaaggcggcaaaccatattctgaatggcttgactctcacctgatccagCTAACGGATGAGGTAAGGAAAGAACAAAGAAAAGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATGATGATAGCAGTGATGATGAACAAgtaagggcccttatgtgacagtgagttgtcgatagggggtttagcccact Alignment from Exonerate_protein2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG attaaggcggcaaaccatattctgaatggcttgactctcacctgatccagCTAACGGATGAGGTAAGGAAAGAACAAAGAAAAGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATGATGATAGCAGTGATGATGAACAAgtaagggcccttatgtgacagtgagttgtcgatagggggtttagcccact Alignment from Exonerate_coding2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG attaaggcggcaaaccatattctgaatggcttgactctcacctgatccagCTAACGGATGAGGTAAGGAAAGAACAAAGAAAAGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATGATGATAGCAGTGATGATGAACAAgtaagggcccttatgtgacagtgagttgtcgatagggggtttagcccact Alignment from GeneWise CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG attaaggcggcaaaccatattctgaatggcttgactctcacctgatccagCTAACGGATGAGGTAAGGAAAGAACAAAGAAAAGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATGATGATAGCAGTGATGATGAACAAgtaagggcccttatgtgacagtgagttgtcgatagggggtttagcccact #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTAGAGCGGCTG-CAGACCTACACCCGTCAG tggagctcttgtctattcaggaggagagatacttttttttatatatacagggAGTCGTGAAGAATTAGTAGAGAGGCTGCCAGA-CTATACCCGTCAGgtaaaagttaccagtagactatctaatgagacttctgaagtcaccaaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctattcaggaggagagatacttttttttatatatacagggAGTCGTGAAGAATTAGTAGAGAGGCTGCCAGACTATACCCGTCAGgtaaaagttaccagtagactatctaatgagacttctgaagtcaccaaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctattcaggaggagagatacttttttttatatatacagGGAGTCGTGAAGAATTAGTAGAGAGGCTGCCAGACTATACCCGTCAGgtaaaagttaccagtagactatctaatgagacttctgaagtcaccaaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctattcaggaggagagatacttttttttatatatacagGGAGTCGTGAAGAATTAGTAGAGAGGCTGCCAGACTATACCCGTCAGgtaaaagttaccagtagactatctaatgagacttctgaagtcaccaaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctattcaggaggagagatacttttttttatatatacagGGAGTCGTGAAGAATTAGTAGAGAGGCTGCCAGACTATACCCGTCAGgtaaaagttaccagtagactatctaatgagacttctgaagtcaccaaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctattcaggaggagagatacttttttttatatatacagGGAGTCGTGAAGAATTAGTAGAGAGGCTGCCAGACTATACCCGTCAGgtaaaagttaccagtagactatctaatgagacttctgaagtcaccaaaga Alignment from Exonerate_coding2genome tggagctcttgtctattcaggaggagagatacttttttttatatatacagggagtcgtgaagaattagtagagaggctgccagactatacccgtcaggtaaaagttaccagtagactatctaatgagacttctgaagtcaccaaaga Alignment from GeneWise TCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctattcaggaggagagatacttttttttatatatacagggagTCGTGAAGAATTAGTAGAGAGGCTGCCAGACTATACCCGTCAGgtaaaagttaccagtagactatctaatgagacttctgaagtcaccaaaga #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTG-GGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGCGGACTAA-GTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGCGGACTAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGCGGACTAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGCGGACTAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGCGGACTAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGCGGACTAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGCGGACTAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac #### Sfxn3_ID9291_9 --> 1 - 2 Original Alignment cTTGGTATTTGCCACA-CCCCTGTGCTGCGCTCTGTTCCCTCAGAGAag aatttatcctgatcagtgtcaggatccataatggtatattttattttcagcTTGGTATTCGCCACCCCCCCTGT-TTGTGCCTTGTTCCCACAGAGAgcgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from CESAR cTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAag aatttatcctgatcagtgtcaggatccataatggtatattttattttcagcTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTCCCACAGAGAgcgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Spaln_aa2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG aatttatcctgatcagtgtcaggatccataatggtatattttattttcagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTCCCACAGAGAGCgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Spaln_nt2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG aatttatcctgatcagtgtcaggatccataatggtatattttattttcagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTCCCACAGAGAGCgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Pairagon CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG aatttatcctgatcagtgtcaggatccataatggtatattttattttcagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTCCCACAGAGAGCgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Exonerate_protein2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG aatttatcctgatcagtgtcaggatccataatggtatattttattttcagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTCCCACAGAGAGCgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG aatttatcctgatcagtgtcaggatccataatggtatattttattttcagCTTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTCCCACAGAGAGCgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct #### Shoc2_ID11421_7 --> 0 - 1 Original Alignment AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGA-GGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGACGGCATAG-CCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTggtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from CESAR AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGACGGCATAGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTggtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Spaln_aa2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGACGGCATAGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Spaln_nt2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGACGGCATAGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Pairagon AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGACGGCATAGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Exonerate_protein2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGACGGCATAGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Exonerate_coding2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGACGGCATAGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from GeneWise AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGACGGCATAGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment g gaCAACCCATCTCAGAGAGCGGA-GACCCCAAGGAAGCTTTAAAGTGTGATTCTga ggtaaagctgttaattggatattagccagaatgacttttgtcatcctcagggCAATCAATCTCAGAGAGTGGTCGATCTCAAGG-GGCTTCAAAGTGTGATTCTgagtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from CESAR g gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga ggtaaggctgttaattggatattagccagaatgacttttgtcatcctcagggCAATCAATCTCAGAGAGTGGTCGATCTCAAGGGGCTTCAAAGTGTGATTCTgagtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Spaln_aa2Genome G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtaaagctgttaattggatattagccagaatgacttttgtcatcctcagGGCAATCAATCTCAGAGAGTGGTCGATCTCAAGGGGCTTCAAAGTGTGATTCTGAgtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Spaln_nt2Genome G GACAACCCATCTCAGAGAGCGGA-GACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtaaagctgttaattggatattagccagaatgacttttgtcatcctcagGGCAATCAATCTCAGAGAGTGGTCGATCTCAAGG-GGCTTCAAAGTGTGATTCTGAgtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Pairagon G GACAACCCATCTCAGAGAGCGG-AGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtaaagctgttaattggatattagccagaatgacttttgtcatcctcagGGCAATCAATCTCAGAGAGTGGTCGATCTCAAGG-GGCTTCAAAGTGTGATTCTGAgtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Exonerate_protein2genome GGACAACCCATCTCA GGTAAAGCTGTTAATtggatattagccagaatgacttttgtcatcctcagggcaatcaatctcagagagtggtcgatctcaaggggcttcaaagtgtgattctgagtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Exonerate_coding2genome ggtaaagctgttaattggatattagccagaatgacttttgtcatcctcagggcaatcaatctcagagagtggtcgatctcaaggggcttcaaagtgtgattctgagtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from GeneWise G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtaaagctgttaattggatattagccagaatgacttttgtcatcctcagGGCAATCAATCTCAGAGAGTGGTCGATCTCAAGGGGCTTCAAAGTGTGATTCTGAgtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAG-GCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggagatgcttccacaagaagaacctcttctttccaattttcttcagcTCCCTGACTGATGAGCGTCCCTG-CCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCGCCTTCCCAGgtaggcagggaggcgtacgctctatcaacacatggcccactgtcaaggtt Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggagatgcttccacaagaagaacctcttctttccaattttcttcagcTCCCTGACTGATGAGCGTCCCTGCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCGCCTTCCCAGgtaggcagggaggcgtacgctctatcaacacatggcccactgtcaaggtt Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggagatgcttccacaagaagaacctcttctttccaattttcttcagCTCCCTGACTGATGAGCGTCCCTGCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCGCCTTCCCAGgtaggcagggaggcgtacgctctatcaacacatggcccactgtcaaggtt Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggagatgcttccacaagaagaacctcttctttccaattttcttcagCTCCCTGACTGATGAGCGTCCCTGCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCGCCTTCCCAGgtaggcagggaggcgtacgctctatcaacacatggcccactgtcaaggtt Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggagatgcttccacaagaagaacctcttctttccaattttcttcagCTCCCTGACTGATGAGCGTCCCTGCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCGCCTTCCCAGgtaggcagggaggcgtacgctctatcaacacatggcccactgtcaaggtt Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggagatgcttccacaagaagaacctcttctttccaattttcttcagCTCCCTGACTGATGAGCGTCCCTGCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCGCCTTCCCAGgtaggcagggaggcgtacgctctatcaacacatggcccactgtcaaggtt Alignment from Exonerate_coding2genome caagggagatgcttccacaagaagaacctcttctttccaattttcttcagctccctgactgatgagcgtccctgcctacccaagattacaccagatctcctacttattacaacagctaacacttctgcccctgatactgatagagaaacaccgccttcccaggtaggcagggaggcgtacgctctatcaacacatggcccactgtcaaggtt Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggagatgcttccacaagaagaacctcttctttccaattttcttcagCTCCCTGACTGATGAGCGTCCCTGCCTACCCAAGATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCGCCTTCCCAGgtaggcagggaggcgtacgctctatcaacacatggcccactgtcaaggtt #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACG-GTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACG-GTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg caggtttatgtaggggaccaggaaggcattttctctgtccttgttcccagtgTTCGCATACTCTAGTGGTTATGCCCTTTCTCCTGA-CGCCAAGTCCTTGCAGGGAATAGGTTCATCTTGCTCATCTGTGGCTggtaacactaaaattaatgtatgtaccatggactcacatgtattgaggcag Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg caggtttatgtaggggaccaggaaggcattttctctgtccttgttcccagtgTTCGCATACTCTAGTGGTTATGCCCTTTCTCCTGACGCCAAGTCCTTGCAGGGAATAGGTTCATCTTGCTCATCTGTGGCTggtaacactaaaattaatgtatgtaccatggactcacatgtattgaggcag Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcattttctctgtccttgttcccagTGTTCGCATACTCTAGTGGTTATGCCCTTTCTCCTGACGCCAAGTCCTTGCAGGGAATAGGTTCATCTTGCTCATCTGTGGCTGgtaacactaaaattaatgtatgtaccatggactcacatgtattgaggcag Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcattttctctgtccttgttcccagTGTTCGCATACTCTAGTGGTTATGCCCTTTCTCCTGA-CGCCAAGTCCTTGCAGGGAATAGGTTCATCTTGCTCATCTGTGGCTGgtaacactaaaattaatgtatgtaccatggactcacatgtattgaggcag Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATG-CCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcattttctctgtccttgttcccagTGTTCGCATACTCTAGTGGTTATGCCCTTTCTCCTGA-CGCCAAGTCCTTGCAGGGAATAGGTTCATCTTGCTCATCTGTGGCTGgtaacactaaaattaatgtatgtaccatggactcacatgtattgaggcag Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcattttctctgtccttgttcccagTGTTCGCATACTCTAGTGGTTATGCCCTTTCTCCTGACGCCAAGTCCTTGCAGGGAATAGGTTCATCTTGCTCATCTGTGGCTGgtaacactaaaattaatgtatgtaccatggactcacatgtattgaggcag Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcattttctctgtccttgttcccagTGTTCGCATACTCTAGTGGTTATGCCCTTTCTCCTGACGCCAAGTCCTTGCAGGGAATAGGTTCATCTTGCTCATCTGTGGCTGgtaacactaaaattaatgtatgtaccatggactcacatgtattgaggcag Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcattttctctgtccttgttcccagTGTTCGCATACTCTAGTGGTTATGCCCTTTCTCCTGACGCCAAGTCCTTGCAGGGAATAGGTTCATCTTGCTCATCTGTGGCTGgtaacactaaaattaatgtatgtaccatggactcacatgtattgaggcag #### Slc18a2_ID12944_11 --> 1 - 0 Original Alignment gTGGCTGTGTGCTCTTCTGGGAATG-ATAGTTGTTGGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccaggTGGCTGTGTGCCCTTTTGGGAATGCACAGTAG-AGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from CESAR gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccaggTGGCTGTGTGCCCTTTTGGGAATGCACAGTAGAGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Spaln_aa2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGCACAGTAGAGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Spaln_nt2Genome GTGGCTGTGTGCTCTTCTGGGAATG-ATAGTTGTTGGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGCACAGTAG-AGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Pairagon GTGGCTGTGTGCTCTTCTGGGAAT--------GATAGTTGTTGGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGCACAGTAGA--------GGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Exonerate_protein2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGCACAGTAGAGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Exonerate_coding2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGCACAGTAGAGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from GeneWise GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGCACAGTAGAGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAG-CTCTTCCCCACTGTGATCag ctatggctggttgatacattgcgaattgctttgtctattcatacttcaagcaATGGGGGTCCTTCGCTCTGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGTGCCTTCACGTGCATCACCATTTTCTCTAGCGAGCCTCT-TCCCACTGTTATCaggtagcagcaattagtccatggatcacaccaccagaccattgcccatagat Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag ctatggctggttgatacattgcgaattgctttgtctattcatacttcaagcaATGGGGGTCCTTCGCTCTGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGTGCCTTCACGTGCATCACCATTTTCTCTAGCGAGCCTCTTCCCACTGTTATCaggtagcagcaattagtccatggatcacaccaccagaccattgcccatagat Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ctatggctggttgatacattgcgaattgctttgtctattcatacttcaagCAATGGGGGTCCTTCGCTCTGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGTGCCTTCACGTGCATCACCATTTTCTCTAGCGAGCCTCTTCCCACTGTTATCAGgtagcagcaattagtccatggatcacaccaccagaccattgcccatagat Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ctatggctggttgatacattgcgaattgctttgtctattcatacttcaagCAATGGGGGTCCTTCGCTCTGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGTGCCTTCACGTGCATCACCATTTTCTCTAGCGAGCCTCTTCCCACTGTTATCAGgtagcagcaattagtccatggatcacaccaccagaccattgcccatagat Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ctatggctggttgatacattgcgaattgctttgtctattcatacttcaagCAATGGGGGTCCTTCGCTCTGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGTGCCTTCACGTGCATCACCATTTTCTCTAGCGAGCCTCTTCCCACTGTTATCAGgtagcagcaattagtccatggatcacaccaccagaccattgcccatagat Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ctatggctggttgatacattgcgaattgctttgtctattcatacttcaagCAATGGGGGTCCTTCGCTCTGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGTGCCTTCACGTGCATCACCATTTTCTCTAGCGAGCCTCTTCCCACTGTTATCAGgtagcagcaattagtccatggatcacaccaccagaccattgcccatagat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ctatggctggttgatacattgcgaattgctttgtctattcatacttcaagCAATGGGGGTCCTTCGCTCTGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGTGCCTTCACGTGCATCACCATTTTCTCTAGCGAGCCTCTTCCCACTGTTATCAGgtagcagcaattagtccatggatcacaccaccagaccattgcccatagat #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCC-CTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg tggcatgggccaagagacaaaggatctttggaccactcctctccccacagtTTTTCCATAGGCTTTACCTTTTATGGATTAGCGATTGAC---------CCTTGGGAGCA-TATATTCCTCCTCCAGTCGATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGTTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATggtaagtcaataatctcctactgggggtgagtgttcaacagaaaactagaa Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg tggcatgggccaagagacaaaggatctttggaccactcctctccccacagtTTTTCCATAGGCTTTACCTTTTATGGATTAGCGATTGACCCTTGGGAG---------CATATATTCCTCCTCCAGTCGATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGTTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATggtaagtcaataatctcctactgggggtgagtgttcaacagaaaactagaa Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG tggcatgggccaagagacaaaggatctttggaccactcctctccccacagTTTTTCCATAGGCTTTACCTTTTATGGATTAGCGATTGAC---------CCTTGGGAGCATATATTCCTCCTCCAGTCGATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGTTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtaagtcaataatctcctactgggggtgagtgttcaacagaaaactagaa Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG tggcatgggccaagagacaaaggatctttggaccactcctctccccacagTTTTTCCATAGGCTTTACCTTTTATGGATTAGCGATTGA--------CCCTTGGGAGC-ATATATTCCTCCTCCAGTCGATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGTTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGG---TCCCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtaagtcaataatctcctactgggggtgagtgttcaacagaaaactagaa Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG tggcatgggccaagagacaaaggatctttggaccactcctctccccacagTTTTTCCATAGGCTTTACCTTTTATGGATTAGCGATTGA--------CCCTTGGGAGC-ATATATTCCTCCTCCAGTCGATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGTTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGG---TCCCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtaagtcaataatctcctactgggggtgagtgttcaacagaaaactagaa Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG tggcatgggccaagagacaaaggatctttggaccactcctctccccacagTTTTTCCATAGGCTTTACCTTTTATGGATTAGCGATTGAC---------CCTTGGGAGCATATATTCCTCCTCCAGTCGATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGTTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtaagtcaataatctcctactgggggtgagtgttcaacagaaaactagaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG tggcatgggccaagagacaaaggatctttggaccactcctctccccacagTTTTTCCATAGGCTTTACCTTTTATGGATTAGCGATTGACCCTTGG---------GAGCATATATTCCTCCTCCAGTCGATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGTTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtaagtcaataatctcctactgggggtgagtgttcaacagaaaactagaa #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATG-CCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagctattgttgctcctcttatcttctggtctctccgtaggTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCT-CCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCCGGTATCATGATGAATACAGCCAGTCTTtgtgagtaccactcctagtgtgacggttgcaaggctactgcggatgttttt Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagctattgttgctcctcttatcttctggtctctccgtaggTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCCGGTATCATGATGAATACAGCCAGTCTTtgtgagtaccactcctagtgtgacggttgcaaggctactgcggtcccctct Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagctattgttgctcctcttatcttctggtctctccgtagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCCGGTATCATGATGAATACAGCCAGTCTTTgtgagtaccactcctagtgtgacggttgcaaggctactgcggatgttttt Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagctattgttgctcctcttatcttctggtctctccgtagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCCGGTATCATGATGAATACAGCCAGTCTTTgtgagtaccactcctagtgtgacggttgcaaggctactgcggatgttttt Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagctattgttgctcctcttatcttctggtctctccgtagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCCGGTATCATGATGAATACAGCCAGTCTTTgtgagtaccactcctagtgtgacggttgcaaggctactgcggatgttttt Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagctattgttgctcctcttatcttctggtctctccgtagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCCGGTATCATGATGAATACAGCCAGTCTTTgtgagtaccactcctagtgtgacggttgcaaggctactgcggatgttttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagctattgttgctcctcttatcttctggtctctccgtagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCCGGTATCATGATGAATACAGCCAGTCTTTgtgagtaccactcctagtgtgacggttgcaaggctactgcggatgttttt #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCC-TTGTTTGGTGGTCTTGCTGACag ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTATCTATATGTCTGGAGTATCAGTTGGGGCTGCCCTTGT-TGGTTGCCTAGCAGACaggtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTATCTATATGTCTGGAGTATCAGTTGGGGCTGCCCTTGTTGGTTGCCTAGCAGACaggtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTATCTATATGTCTGGAGTATCAGTTGGGGCTGCCCTTGTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTATCTATATGTCTGGAGTATCAGTTGGGGCTGCCCTTGTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTATCTATATGTCTGGAGTATCAGTTGGGGCTGCCCTTGTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTATCTATATGTCTGGAGTATCAGTTGGGGCTGCCCTTGTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTATCTATATGTCTGGAGTATCAGTTGGGGCTGCCCTTGTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTATCTATATGTCTGGAGTATCAGTTGGGGCTGCCCTTGTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTA-CTGGGAGCCATG---ATGTTTGGCTACCTGGCGGACag ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTG---CTTTGGTG-CATGATGTTGTTTGGTTACCTTTCAGATaggtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGCTTTGGTGCATGATGTTGTTTGGTTACCTTTCAGATaggtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGCTTTGGTGCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGCTTTGGTGCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCC-----------ATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTG-----------CTTTGGTGCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGCTTTGGTGCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Exonerate_coding2genome ggctactaaaattgacatatttcagatcggcacggttgctctctccacagtggaacctttgctcacatagagcctttcaccgattggcccagtcactattcatggtaggagtgctttggtgcatgatgttgtttggttacctttcagataggtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCAGTCACTATTCATGGTAGGAGTGCTTTGGTGCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGC-TGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagaaATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCCTGCCTCT-CTTTTACACTAGTGAGCTCTACCCCAGAGTCCTCaggtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagaaATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCCTGCCTCTCTTTTACACTAGTGAGCTCTACCCCAGAGTCCTCaggtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCCTGCCTCTCTTTTACACTAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCCTGCCTCTCTTTTACACTAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAG-CTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCCTGCCTC-TCTTTTACACTAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCCTGCCTCTCTTTTACACTAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCCTGCCTCTCTTTTACACTAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCCTGCCTCTCTTTTACACTAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTG-AAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg tgatgtcttttaagatcagtagactctcctcttatttccctgcttcctaggCAAACAGGCATGGGTATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCCAAAGTCACCG-AGAACTGCAGTCCTTCATTCCTAATGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGATtggtaagaccttaacttttgttacacacagttaacctagcaggctaggttgc Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg tgatgtcttttaagatcagtagactctcctcttatttccctgcttcctaggCAAACAGGCATGGGTATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCCAAAGTCACCGAGAACTGCAGTCCTTCATTCCTAATGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGATtggtaagaccttaacttttgttacacacagttaacctagcaggctaggttgc Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tgatgtcttttaagatcagtagactctcctcttatttccctgcttcctagGCAAACAGGCATGGGTATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCCAAAGTCACCGAGAACTGCAGTCCTTCATTCCTAATGTCATCTTTGGTACCATGCTA---CTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtaagaccttaacttttgttacacacagttaacctagcaggctaggttgc Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tgatgtcttttaagatcagtagactctcctcttatttccctgcttcctagGCAAACAGGCATGGGTATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCCAAAGTCACCGAGAACTGCAGTCCTTCATTCCTAATGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtaagaccttaacttttgttacacacagttaacctagcaggctaggttgc Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tgatgtcttttaagatcagtagactctcctcttatttccctgcttcctagGCAAACAGGCATGGGTATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCCAAAGTCACCGAGAACTGCAGTCCTTCATTCCTAATGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtaagaccttaacttttgttacacacagttaacctagcaggctaggttgc Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tgatgtcttttaagatcagtagactctcctcttatttccctgcttcctagGCAAACAGGCATGGGTATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCCAAAGTCACCGAGAACTGCAGTCCTTCATTCCTAATGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtaagaccttaacttttgttacacacagttaacctagcaggctaggttgc Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tgatgtcttttaagatcagtagactctcctcttatttccctgcttcctagGCAAACAGGCATGGGTATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCCAAAGTCACCGAGAACTGCAGTCCTTCATTCCTAATGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtaagaccttaacttttgttacacacagttaacctagcaggctaggttgc Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tgatgtcttttaagatcagtagactctcctcttatttccctgcttcctagGCAAACAGGCATGGGTATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCCAAAGTCACCGAGAACTGCAGTCCTTCATTCCTAATGTCATCTTTGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtaagaccttaacttttgttacacacagttaacctagcaggctaggttgc #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTGGGG-CACCCATTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaaggaGCTGTGGGCCTGGTCCTGGGGCCACCCAT-TGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaaggaGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Exonerate_coding2genome TGGATCTCTGGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttTTCTGTGAAGGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from GeneWise CCCGTGGAAGAGTTTGTGGCTGGCTGGATCTCTGGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG ggcatgttacgtgggc---CTGGCATTTTTTCCATTTTTTTTCTGTGAAGGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTG-GACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTCGACTGTGTTG-TAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from CESAR GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTG-GACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTCGACTGTGTTG-TAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTCGACTGTGTTGTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTG-GACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTCGACTGTGTTGT-AAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Pairagon GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTG-TGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTCGACTGTGTTGT-AAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTCGACTGTGTTGTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Exonerate_coding2genome tgacttgatcattatgggagcactgcactctaattgccccgtctccccaggtgcgcttacaaacccaaagcacatatcggggcattgttcgactgtgttgtaagacatatcgtcatcaatcagtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTCGACTGTGTTGTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGC-ACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagcTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCCACCC-TCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from CESAR cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagcTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCCACCCTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCCACCCTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Spaln_nt2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCCACCCTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Pairagon CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCCACCCTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCCACCCTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Exonerate_coding2genome AGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatAGCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCCACCCTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from GeneWise AGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatAGCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCCACCCTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGC-ATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG tacaaacaaagctggaatgggagacttgcatgcctgtctcttacctctaggtGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCCATCCTCCTCC-CATTGTATGTTACCTCAGCTTGCCTCACCTGgtaagttgcttcatagtttatgttatgctatgcaccacttgaacataaaa Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG tacaaacaaagctggaatgggagacttgcatgcctgtctcttacctctaggtGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtaagttgcttcatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG tacaaacaaagctggaatgggagacttgcatgcctgtctcttacctctagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtaagttgcttcatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG tacaaacaaagctggaatgggagacttgcatgcctgtctcttacctctagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtaagttgcttcatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGG-CATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG tacaaacaaagctggaatgggagacttgcatgcctgtctcttacctctagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCCATCCTCCTC-CCATTGTATGTTACCTCAGCTTGCCTCACCTGgtaagttgcttcatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG tacaaacaaagctggaatgggagacttgcatgcctgtctcttacctctagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtaagttgcttcatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG tacaaacaaagctggaatgggagacttgcatgcctgtctcttacctctagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtaagttgcttcatagtttatgttatgctatgcaccacttgaacataaaa Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG tacaaacaaagctggaatgggagacttgcatgcctgtctcttacctctagGTGGTGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCCATCCTCCTCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtaagttgcttcatagtttatgttatgctatgcaccacttgaacataaaa #### Slc29a2_ID793_7 --> 0 - 1 Original Alignment AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAG-GCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTg catttggagttaactgtatcaagatgttccatccacccctctctttccagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAACGCTCCAACTC-GGAGCTTGAGAATAAAGCTGAACTCCTTCAAGCAggtataaatcaggattaattggctctgttggaggcttaactcttttttctc Alignment from CESAR AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTg catttggagttaactgtatcaagatgttccatccacccctctctttccagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAACGCTCCAACTCGGAGCTTGAGAATAAAGCTGAACTCCTTCAAGCAggtataaatcaggattaattggctctgttggaggcttaactcttttttctc Alignment from Spaln_aa2Genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG catttggagttaactgtatcaagatgttccatccacccctctctttccagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAACGCTCCAACTCGGAGCTTGAGAATAAAGCTGAACTCCTTCAAGCAGgtataaatcaggattaattggctctgttggaggcttaactcttttttctc Alignment from Spaln_nt2Genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG catttggagttaactgtatcaagatgttccatccacccctctctttccagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAACGCTCCAACTCGGAGCTTGAGAATAAAGCTGAACTCCTTCAAGCAGgtataaatcaggattaattggctctgttggaggcttaactcttttttctc Alignment from Pairagon AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAG-GCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG catttggagttaactgtatcaagatgttccatccacccctctctttccagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAACGCTCCAACTC-GGAGCTTGAGAATAAAGCTGAACTCCTTCAAGCAGgtataaatcaggattaattggctctgttggaggcttaactcttttttctc Alignment from Exonerate_protein2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG catttggagttaactgtatcaagatgttccatccacccctctctttccagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAACGCTCCAACTCGGAGCTTGAGAATAAAGCTGAACTCCTTCAAGCAGgtataaatcaggattaattggctctgttggaggcttaactcttttttctc Alignment from Exonerate_coding2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG catttggagttaactgtatcaagatgttccatccacccctctctttccagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAACGCTCCAACTCGGAGCTTGAGAATAAAGCTGAACTCCTTCAAGCAGgtataaatcaggattaattggctctgttggaggcttaactcttttttctc Alignment from GeneWise AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG catttggagttaactgtatcaagatgttccatccacccctctctttccagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAACGCTCCAACTCGGAGCTTGAGAATAAAGCTGAACTCCTTCAAGCAGgtataaatcaggattaattggctctgttggaggcttaactcttttttctc #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAG-CCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgttgactgactgctctgatcctagatGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGCCCAACTCTTGAGCTTGACCCTGAGAGGGAGCCCAG-ACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtgggataccatgtacagccaggggtgggagcagtgggttgcctgatgta Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgttgactgactgctctgatcctagatGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGCCCAACTCTTGAGCTTGACCCTGAGAGGGAGCCCAGACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtgggataccatgtacagccaggggtgggagcagtgggttgcctgatgta Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgttgactgactgctctgatcctagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGCCCAACTCTTGAGCTTGACCCTGAGAGGGAGCCCAGACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtgggataccatgtacagccaggggtgggagcagtgggttgcctgatgta Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgttgactgactgctctgatcctagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGCCCAACTCTTGAGCTTGACCCTGAGAGGGAGCCCAGACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtgggataccatgtacagccaggggtgggagcagtgggttgcctgatgta Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgttgactgactgctctgatcctagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGCCCAACTCTTGAGCTTGACCCTGAGAGGGAGCCCAGACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtgggataccatgtacagccaggggtgggagcagtgggttgcctgatgta Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgttgactgactgctctgatcctagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGCCCAACTCTTGAGCTTGACCCTGAGAGGGAGCCCAGACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtgggataccatgtacagccaggggtgggagcagtgggttgcctgatgta Alignment from Exonerate_coding2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgttgactgactgctctgatcctagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGCCCAACTCTTGAGCTTGACCCTGAGAGGGAGCCCAGACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtgggataccatgtacagccaggggtgggagcagtgggttgcctgatgta Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgttgactgactgctctgatcctagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGCCCAACTCTTGAGCTTGACCCTGAGAGGGAGCCCAGACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtgggataccatgtacagccaggggtgggagcagtgggttgcctgatgta #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGC-CGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCCGGAGCCTGA-CTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCCGGAGCCTGACTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCCGGAGCCTGACTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCCGGAGCCTGACTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGG-CCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCCGGAGCCTGA-CTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCCGGAGCCTGACTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCCGGAGCCTGACTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCCGGAGCCTGACTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACT-CCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCCGTTT-CAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCCGTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCCGTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCCGTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCCGTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCCGTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCCGTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from GeneWise --------------------------------------------------GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG TGAACATGTGGGTCGGAGGGGCAAGTGTTTTTTCTGGTTTGTGTGATCAGGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCCGTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg #### Slc3a2_ID2303_6 --> 0 - 2 Original Alignment AATGCACCCTTGTACTTGGCTGAGTGG-CAGAATATCACCAAGAACTTAAGTGAGGACag ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCAGAATGGCCAGAACATCT-CAAGAACCTT---GAAGACaggtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from CESAR AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCAGAATGGCCAGAACATCTCAAGAACCTT---GAAGACaggtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Spaln_aa2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCAGAATGGCCAGAACATCTCAAGAACCTT---GAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Spaln_nt2Genome AATGCACCCTTGTACTTGGCTGAGTGGC-AGAATATCACCAAGAACTTAAGTGAGGACAG ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCAGAATGGCCAGAACATC-TCAAGAACCT---TGAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Pairagon AATGCACCCTTGTACTTGGCTGAGTGG-CAGAATATCACCAAGAACTTAAGTGAGGACAG ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCAGAATGGCCAGAACATC-TCAAGAACCT---TGAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Exonerate_protein2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCAGAATGGCCAGAACATCTCAAGAACCTT---GAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Exonerate_coding2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCAGAATGGCCAGAACATCTCAAGAACCTT---GAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from GeneWise --------------------------------------------------AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG CCATGGTGGGTTCATGTTCTGTGTGTGAACTTTTTGTCTTCTCGGTTCAGAATGCACCCTTGTACTTAGCAGAATGGCCAGAACATCTCAAGAACCTT---GAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa #### Slit1_ID8230_9 --> 2 - 2 Original Alignment gcCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGT-TCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGat ctagtttgagagtctctgagtactcctctactaaattgaatgttttgtaggcCAGGGGAGGGCGGCAGGAGCACCTACTTGCACCCTCTCATCAGGTCTCCTGCCCAA-CATGTGTAGCTGCAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCGGAGACTATGACAGAGgtgtgggtaaaaagccaggcaagctattctagtcagtggcaaaccaatattg Alignment from CESAR gcCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGat ctagtttgagagtctctgagtactcctctactaaattgaatgttttgtaggcCAGGGGAGGGCGGCAGGAGCACCTACTTGCACCCTCTCATCAGGTCTCCTGCCCAACATGTGTAGCTGCAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCGGAGACTATGACAGAGgtgtgggtaaaaagccaggcaagctattctagtcagtggcaaaccaatattg Alignment from Spaln_aa2Genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttgagagtctctgagtactcctctactaaattgaatgttttgtagGCCAGGGGAGGGCGGCAGGAGCACCTACTTGCACCCTCTCATCAGGTCTCCTGCCCAACATGTGTAGCTGCAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCGGAGACTATGACAGAGGTgtgggtaaaaagccaggcaagctattctagtcagtggcaaaccaatattg Alignment from Spaln_nt2Genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGT-TCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttgagagtctctgagtactcctctactaaattgaatgttttgtagGCCAGGGGAGGGCGGCAGGAGCACCTACTTGCACCCTCTCATCAGGTCTCCTGCCCA-ACATGTGTAGCTGCAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCGGAGACTATGACAGAGGTgtgggtaaaaagccaggcaagctattctagtcagtggcaaaccaatattg Alignment from Pairagon GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGT-TCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttgagagtctctgagtactcctctactaaattgaatgttttgtagGCCAGGGGAGGGCGGCAGGAGCACCTACTTGCACCCTCTCATCAGGTCTCCTGCCCAA-CATGTGTAGCTGCAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCGGAGACTATGACAGAGGTgtgggtaaaaagccaggcaagctattctagtcagtggcaaaccaatattg Alignment from Exonerate_protein2genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttgagagtctctgagtactcctctactaaattgaatgttttgtagGCCAGGGGAGGGCGGCAGGAGCACCTACTTGCACCCTCTCATCAGGTCTCCTGCCCAACATGTGTAGCTGCAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCGGAGACTATGACAGAGGTgtgggtaaaaagccaggcaagctattctagtcagtggcaaaccaatattg Alignment from Exonerate_coding2genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttgagagtctctgagtactcctctactaaattgaatgttttgtagGCCAGGGGAGGGCGGCAGGAGCACCTACTTGCACCCTCTCATCAGGTCTCCTGCCCAACATGTGTAGCTGCAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCGGAGACTATGACAGAGGTgtgggtaaaaagccaggcaagctattctagtcagtggcaaaccaatattg Alignment from GeneWise GGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttgagagtctctgagtactcctctactaaattgaatgttttgtaggccaggggagGGCGGCAGGAGCACCTACTTGCACCCTCTCATCAGGTCTCCTGCCCAACATGTGTAGCTGCAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCGGAGACTATGACAGAGGTgtgggtaaaaagccaggcaagctattctagtcagtggcaaaccaatattg #### Slit1_ID8233_6 --> 1 - 2 Original Alignment aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGT-GCCCTACGGGGACTGGAGGTTct gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagaCAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTCGCCC-ACGCGGGTTGGATGTTctgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from CESAR aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagaCAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTCGCCCACGCGGGTTGGATGTTctgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Spaln_aa2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTCGCCCACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Spaln_nt2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTCGCCCACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Pairagon ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTCGCCCACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Exonerate_protein2genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTCGCCCACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Exonerate_coding2genome CAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagaCAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTCGCCCACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from GeneWise ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTCGCCCACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg #### Slk_ID10250_6 --> 1 - 2 Original Alignment gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTG-AAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg atttgataactatcttgaatatctgcccttatgccttgttgctctcccaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGCAAGA-TGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGttgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from CESAR gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg atttgataactatcttgaatatctgcccttatgccttgttgctctcccaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGCAAGATGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGttgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Spaln_aa2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGCAAGATGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Spaln_nt2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGCAAGATGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Pairagon GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGCAAGATGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Exonerate_protein2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGCAAGATGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Exonerate_coding2genome ATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGCAAGATGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from GeneWise GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGCAAGATGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCT-GGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTCGGTGGCA-AGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTCGGTGGCAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTCGGTGGCAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTCGGTGGCAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCT-GGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTCGGTGGC-AAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTCGGTGGCAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTCGGTGGCAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTCGGTGGCAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac #### Snx15_ID1465_7 --> 2 - 1 Original Alignment aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCT------GCCCCAGCTTACCTTGGCCAGGCCACA-GAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg agcaatggataaataggtccccaagaggttatgaacctttggtgttgcagcaAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGCGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAGCACGAGC-TATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTggtgaggagtaaggtggttaagcagaacacaaaaatcccaataatgtaatc Alignment from CESAR aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCC------CCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg agcaatggataaataggtccccaagaggttatgaacctttggtgttgcagcaAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGCGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAGCACGAGCTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTggtgaggagtaaggtggttaagcagaacacaaaaatcccaataatgtaatc Alignment from Spaln_aa2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCC------CCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agcaatggataaataggtccccaagaggttatgaacctttggtgttgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGCGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAGCACGAGCTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtgaggagtaaggtggttaagcagaacacaaaaatcccaataatgtaatc Alignment from Spaln_nt2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAG------CTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agcaatggataaataggtccccaagaggttatgaacctttggtgttgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGCGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAGCACGAGCTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtgaggagtaaggtggttaagcagaacacaaaaatcccaataatgtaatc Alignment from Pairagon AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAG------CTTACCTTGGCCAGGCCACA-GAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agcaatggataaataggtccccaagaggttatgaacctttggtgttgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGCGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAGCACGAGCT-ATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtgaggagtaaggtggttaagcagaacacaaaaatcccaataatgtaatc Alignment from Exonerate_protein2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agcaatggataaataggtccccaagaggttatgaacctttggtgttgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGCGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAGCACGAGCTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtgaggagtaaggtggttaagcagaacacaaaaatcccaataatgtaatc Alignment from Exonerate_coding2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agcaatggataaataggtccccaagaggttatgaacctttggtgttgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGCGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAGCACGAGCTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtgaggagtaaggtggttaagcagaacacaaaaatcccaataatgtaatc Alignment from GeneWise AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agcaatggataaataggtccccaagaggttatgaacctttggtgttgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGCGAGCCTGCTCCAGGTCCACCTTATCTTGGCCAGGCAGCACGAGCTATCACTCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtgaggagtaaggtggttaagcagaacacaaaaatcccaataatgtaatc #### Snx15_ID1466_6 --> 2 - 1 Original Alignment tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAG-GAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgtttccacccccagggtaagtctcaatgacctccatttctgtgctcagtaGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGATCATCTCTTCAGCTGTGACAGTACGGAGCGAGG-TTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGAGggtgagactggatggaggggcagtcctaaaggccttgaagaactccatcag Alignment from CESAR tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgtttccacccccagggtaagtctcaatgacctccatttctgtgctcagtaGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGATCATCTCTTCAGCTGTGACAGTACGGAGCGAGGTTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGAGggtgagactggatggaggggcagtcctaaaggccttgaagaactccatcag Alignment from Spaln_aa2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccacccccagggtaagtctcaatgacctccatttctgtgctcagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGATCATCTCTTCAGCTGTGACAGTACGGAGCGAGGTTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGAGGgtgagactggatggaggggcagtcctaaaggccttgaagaactccatcag Alignment from Spaln_nt2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccacccccagggtaagtctcaatgacctccatttctgtgctcagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGATCATCTCTTCAGCTGTGACAGTACGGAGCGAGGTTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGAGGgtgagactggatggaggggcagtcctaaaggccttgaagaactccatcag Alignment from Pairagon TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccacccccagggtaagtctcaatgacctccatttctgtgctcagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGATCATCTCTTCAGCTGTGACAGTACGGAGCGAGGTTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGAGGgtgagactggatggaggggcagtcctaaaggccttgaagaactccatcag Alignment from Exonerate_protein2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccacccccagggtaagtctcaatgacctccatttctgtgctcagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGATCATCTCTTCAGCTGTGACAGTACGGAGCGAGGTTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGAGGgtgagactggatggaggggcagtcctaaaggccttgaagaactccatcag Alignment from Exonerate_coding2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccacccccagggtaagtctcaatgacctccatttctgtgctcagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGATCATCTCTTCAGCTGTGACAGTACGGAGCGAGGTTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGAGGgtgagactggatggaggggcagtcctaaaggccttgaagaactccatcag Alignment from GeneWise TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccacccccagggtaagtctcaatgacctccatttctgtgctcagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGATCATCTCTTCAGCTGTGACAGTACGGAGCGAGGTTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGAGGgtgagactggatggaggggcagtcctaaaggccttgaagaactccatcag #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAG-GTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGCGTGTCCAGAG-CCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAggtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGCGTGTCCAGAGCCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAggtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGCGTGTCCAGAGCCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGCGTGTCCAGAGCCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAG-GTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGCGTGTCCAGAG-CCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGCGTGTCCAGAGCCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGCGTGTCCAGAGCCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGCGTGTCCAGAGCCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGAC-CTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaataggaCGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCT-TACAGTGCCAATCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaataggaCGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTACAGTGCCAATCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTACAGTGCCAATCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACC-TGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTT-ACAGTGCCAATCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGA-CCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTT-ACAGTGCCAATCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTACAGTGCCAATCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTACAGTGCCAATCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTACAGTGCCAATCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc #### Snx32_ID1066_12 --> 2 - 0 Original Alignment agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTG-GAGCTCAAGCACGCCAAG tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagaaCTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGCGAGC-CAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from CESAR agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagaaCTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGCGAGCCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Spaln_aa2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGCGAGCCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Spaln_nt2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTG-GAGCTCAAGCACGCCAAG tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGCGAGC-CAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Pairagon AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGCGAGCCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Exonerate_protein2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGCGAGCCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Exonerate_coding2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGCGAGCCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from GeneWise AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAGGCCAGCACCCTGCTTCTCCAGAACACCCTTGTTGCCCTTAAGGGAGAGCC tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGCGAGCCAAGCAGGCCAAGGTAAGTTGTTACTTCAGCTACATCACAAAGAACTTACTACCCAGTCTGGA #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGG-CCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCTCAGCAG-GAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAggtgaggcctgaaggattgcaacaatcaattattctcttcttccctcaaca Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCTCAGCAGGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAggtgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccata Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCTCAGCAGGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaattattctcttcttccctcaaca Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGC-CAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGC-GC--TTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCTCAGCAG-GAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaattattctcttcttccctcaaca Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGC-CAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGC---------GCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCTCAGCAG-GAGCCACCAGCAACTGTGTTGCCAGC------AGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaattattctcttcttccctcaaca Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCTCAGCAGGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaattattctcttcttccctcaaca Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCTCAGCAGGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaattattctcttcttccctcaaca Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC---TTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCTCAGCAGGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaattattctcttcttccctcaaca #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCTATCTCT-GCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcgcacatacctccaattacaattgcccagagcagacacgcacctttcaggcCTGGCAGACAACTATATTCCCATTTCACGCT---GTGA-CAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAaggtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from CESAR gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcgcacatacctccaattacaattgcccagagcagacacgcacctttcaggcCTGGCAGACAACTATATTCCCATTTCACGCTGT---GACAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAaggtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCATTTCACGCTGT---GACAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCATTTC--ACGCTGTGA-CAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Pairagon GCCTGGCAGACAACTATATCCCTATCTC------TGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCATTTCACGCTGTG---------ACAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCATTTCACGCTGT---GACAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCATTTCACGCTGT---GACAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from GeneWise GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAG-- gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCATTTCACGCTGT---GACAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAG-AACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGCAACAGGA-GGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGCAACAGGAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGCAACAGGAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGCAACAGGAGGAGGTATCTGGGGGGCTCCTAAGAGG---TGTTAGGTATGCAGATGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCAC---CGGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGCAACAGGAGGAGGTATCTGGGGGGCTCCTAAGAGG---TGTTAGGTATGCAGATGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGCAACAGGAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGCAACAGGAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGCAACAGGAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGG-CTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCCTGCATG-CACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAG------TACGCCGGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCCTGCATGCACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCCTGCATGCACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Spaln_nt2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGC------CGGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCCTGCATGCACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGG-CTACATGACACCTATGTGGAAAACGAAGA agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCCTGCATG-CACTTATGTAGAGAATGAAGAgtatgaatacaacagccttgttgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCCTGCATGCACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCCTGCATGCACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCCTGCATGCACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTC-AATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg ctttacccaatactgatctgacagaataaataggtagttttccattacaggTACCCCAATGTCCAATGTGCATA-CTTCACCACCAGCTGGAGAGATGGGCTAGCTTTTAATGCAATCGTGCATAAACACcggtaagggtgtgaggtcctgacttatatatttgtgcacaggtgtagcaagc Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg ctttacccaatactgatctgacagaataaataggtagttttccattacaggTACCCCAATGTCCAATGTGCATACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTTAATGCAATCGTGCATAAACACcggtaagggtgtgaggtcctgacttatatatttgtgcacaggtgtagcaagc Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctttacccaatactgatctgacagaataaataggtagttttccattacagGTACCCCAATGTCCAATGTGCATACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTTAATGCAATCGTGCATAAACACCGgtaagggtgtgaggtcctgacttatatatttgtgcacaggtgtagcaagc Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctttacccaatactgatctgacagaataaataggtagttttccattacagGTACCCCAATGTCCAATGTGCATACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTTAATGCAATCGTGCATAAACACCGgtaagggtgtgaggtcctgacttatatatttgtgcacaggtgtagcaagc Alignment from Pairagon ATACCCCAATGT-CAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctttacccaatactgatctgacagaataaataggtagttttccattacagGTACCCCAATGTCCAATGTGCAT-ACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTTAATGCAATCGTGCATAAACACCGgtaagggtgtgaggtcctgacttatatatttgtgcacaggtgtagcaagc Alignment from Exonerate_protein2genome ctttacccaatactgatctgacagaataaataggtagttttccattacaggtaccccaatgtccaatgtgcatacttcaccaccagctggagagatgggctagcttttaatgcaatcgtgcataaacaccggtaagggtgtgaggtcctgacttatatatttgtgcacaggtgtagcaagc Alignment from Exonerate_coding2genome ctttacccaatactgatctgacagaataaataggtagttttccattacaggtaccccaatgtccaatgtgcatacttcaccaccagctggagagatgggctagcttttaatgcaatcgtgcataaacaccggtaagggtgtgaggtcctgacttatatatttgtgcacaggtgtagcaagc Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctttacccaatactgatctgacagaataaataggtagttttccattacagGTACCCCAATGTCCAATGTGCATACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTTAATGCAATCGTGCATAAACACCGgtaagggtgtgaggtcctgacttatatatttgtgcacaggtgtagcaagc #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGC-AAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccgttctgccactacccccacttaatctgttctgcttcccctcagGCCTGGGAGCGGTTGGAGAAATCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGCCAGAAAAAACTAGAGAAACTAGCTGCTCGATTTGACCACCAAGGCTT-TATGCGGAAGACTTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaagttttccccaccagcctaaatgtgtgtcttaactaggcctgtgcag Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccgttctgccactacccccacttaatctgttctgcttcccctcagGCCTGGGAGCGGTTGGAGAAATCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGCCAGAAAAAACTAGAGAAACTAGCTGCTCGATTTGACCACCAAGGCTTTATGCGGAAGACTTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaagttttccccaccagcctaaatgtgtgtcttaactaggcctgtgcag Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccgttctgccactacccccacttaatctgttctgcttcccctcagGCCTGGGAGCGGTTGGAGAAATCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGCCAGAAAAAACTAGAGAAACTAGCTGCTCGATTTGACCACCAAGGCTTTATGCGGAAGACTTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaagttttccccaccagcctaaatgtgtgtcttaactaggcctgtgcag Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccgttctgccactacccccacttaatctgttctgcttcccctcagGCCTGGGAGCGGTTGGAGAAATCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGCCAGAAAAAACTAGAGAAACTAGCTGCTCGATTTGACCACCAAGGCTTTATGCGGAAGACTTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaagttttccccaccagcctaaatgtgtgtcttaactaggcctgtgcag Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccgttctgccactacccccacttaatctgttctgcttcccctcagGCCTGGGAGCGGTTGGAGAAATCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGCCAGAAAAAACTAGAGAAACTAGCTGCTCGATTTGACCACCAAGGCTTTATGCGGAAGACTTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaagttttccccaccagcctaaatgtgtgtcttaactaggcctgtgcag Alignment from Exonerate_protein2genome ctaacccgttctgccactacccccacttaatctgttctgcttcccctcaggcctgggagcggttggagaaatctgaacatgagagagagctagcattgcgcacagagctcattcgccagaaaaaactagagaaactagctgctcgatttgaccaccaaggctttatgcggaagacttggctcagagagaaccagcgacttgtttctcaagtaagttttccccaccagcctaaatgtgtgtcttaactaggcctgtgcag Alignment from Exonerate_coding2genome ctaacccgttctgccactacccccacttaatctgttctgcttcccctcaggcctgggagcggttggagaaatctgaacatgagagagagctagcattgcgcacagagctcattcgccagaaaaaactagagaaactagctgctcgatttgaccaccaaggctttatgcggaagacttggctcagagagaaccagcgacttgtttctcaagtaagttttccccaccagcctaaatgtgtgtcttaactaggcctgtgcag Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccgttctgccactacccccacttaatctgttctgcttcccctcagGCCTGGGAGCGGTTGGAGAAATCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGCCAGAAAAAACTAGAGAAACTAGCTGCTCGATTTGACCACCAAGGCTTTATGCGGAAGACTTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaagttttccccaccagcctaaatgtgtgtcttaactaggcctgtgcag #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment g cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAG-CGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT ggtgagtgcatatagttatctttagctggtgccgtttctgtcctctgcagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGAAGAGAGCTAGACGATCTAGAACAATGGATACAGGAGCCATG-GGTCGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgatgctacagttttgcaaccaggaccaaaatatgtggggtaacaaagg Alignment from CESAR g cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT ggtaagggcatatagttatctttagctggtgccgtttctgtcctctgcagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGAAGAGAGCTAGACGATCTAGAACAATGGATACAGGAGCCATGGGTCGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgatgctacagttttgcaaccaggaccaaaatatgtggggtaacaaagg Alignment from Spaln_aa2Genome G CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GgtgagtgcatatagttatctttagctggtgccgtttctgtcctctgcagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGAAGAGAGCTAGACGATCTAGAACAATGGATACAGGAGCCATGGGTCGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgatgctacagttttgcaaccaggaccaaaatatgtggggtaacaaagg Alignment from Spaln_nt2Genome G CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GgtgagtgcatatagttatctttagctggtgccgtttctgtcctctgcagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGAAGAGAGCTAGACGATCTAGAACAATGGATACAGGAGCCATGGGTCGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgatgctacagttttgcaaccaggaccaaaatatgtggggtaacaaagg Alignment from Pairagon G CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GgtgagtgcatatagttatctttagctggtgccgtttctgtcctctgcagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGAAGAGAGCTAGACGATCTAGAACAATGGATACAGGAGCCATGGGTCGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgatgctacagttttgcaaccaggaccaaaatatgtggggtaacaaagg Alignment from Exonerate_protein2genome G CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GgtgagtgcatatagttatctttagctggtgccgtttctgtcctctgcagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGAAGAGAGCTAGACGATCTAGAACAATGGATACAGGAGCCATGGGTCGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgatgctacagttttgcaaccaggaccaaaatatgtggggtaacaaagg Alignment from Exonerate_coding2genome G CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GgtgagtgcatatagttatctttagctggtgccgtttctgtcctctgcagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGAAGAGAGCTAGACGATCTAGAACAATGGATACAGGAGCCATGGGTCGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgatgctacagttttgcaaccaggaccaaaatatgtggggtaacaaagg Alignment from GeneWise G CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GgtgagtgcatatagttatctttagctggtgccgtttctgtcctctgcagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGAAGAGAGCTAGACGATCTAGAACAATGGATACAGGAGCCATGGGTCGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgatgctacagttttgcaaccaggaccaaaatatgtggggtaacaaagg #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGG-GCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccatctcttcctgtcctcgccttgctgcttgtcttatagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGCGCCCAGCTCC-AGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtactactcatggtggctggttttctccaagtgctactaagttgggtggg Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccatctcttcctgtcctcgccttgctgcttgtcttatagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGCGCCCAGCTCCAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtactactcatggtggctggttttctccaagtgctactaagttgggtggg Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttcctgtcctcgccttgctgcttgtcttatagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGCGCCCAGCTCCAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtactactcatggtggctggttttctccaagtgctactaagttgggtggg Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttcctgtcctcgccttgctgcttgtcttatagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGCGCCCAGCTCCAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtactactcatggtggctggttttctccaagtgctactaagttgggtggg Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGG-GCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCGG------------------------------------------------- tctgtgatctaccatctcttcctgtcctcgccttgctgcttgtcttatagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGCGCCCAGCTCCA-GGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGGTACTACTCATGGTGGCTGGTTTTCTCCAAGTGCTACTAAGTTGGGTGGG Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttcctgtcctcgccttgctgcttgtcttatagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGCGCCCAGCTCCAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtactactcatggtggctggttttctccaagtgctactaagttgggtggg Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttcctgtcctcgccttgctgcttgtcttatagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGCGCCCAGCTCCAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtactactcatggtggctggttttctccaagtgctactaagttgggtggg Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttcctgtcctcgccttgctgcttgtcttatagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGCGCCCAGCTCCAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtactactcatggtggctggttttctccaagtgctactaagttgggtggg #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTG-TCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg ggtggattcaaatgcatgtcaagtcccattttgtgtttacctatctgcagATTTCAGAGAAGCTGCTCTCAGC-ACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTggtaccgtaattaacaatatcgtgggaggtaggggttattgaagggtgcac Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg ggtggattcaaatgcatgtcaagtcccattttgtgtttacctatctgcagATTTCAGAGAAGCTGCTCTCAGCACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTggtaccgtaattaacaatatcgtgggaggtaggggttattgaagggtgcac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggtggattcaaatgcatgtcaagtcccattttgtgtttacctatctgcagATTTCAGAGAAGCTGCTCTCAGCACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaccgtaattaacaatatcgtgggaggtaggggttattgaagggtgcac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggtggattcaaatgcatgtcaagtcccattttgtgtttacctatctgcagATTTCAGAGAAGCTGCTCTCAGCACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaccgtaattaacaatatcgtgggaggtaggggttattgaagggtgcac Alignment from Pairagon ATCTCAGAGAAGCTG-TCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggtggattcaaatgcatgtcaagtcccattttgtgtttacctatctgcagATTTCAGAGAAGCTGCTCTCAGC-ACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaccgtaattaacaatatcgtgggaggtaggggttattgaagggtgcac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggtggattcaaatgcatgtcaagtcccattttgtgtttacctatctgcagATTTCAGAGAAGCTGCTCTCAGCACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaccgtaattaacaatatcgtgggaggtaggggttattgaagggtgcac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggtggattcaaatgcatgtcaagtcccattttgtgtttacctatctgcagATTTCAGAGAAGCTGCTCTCAGCACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaccgtaattaacaatatcgtgggaggtaggggttattgaagggtgcac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggtggattcaaatgcatgtcaagtcccattttgtgtttacctatctgcagATTTCAGAGAAGCTGCTCTCAGCACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaccgtaattaacaatatcgtgggaggtaggggttattgaagggtgcac #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCA-GAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg atattctactctcattggttcccactcttgctcccactcactgtgtgcagCTGGAAGAGAGGGAAATTGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCTACGAAGGGAGTC-AGTGGATGGCCAAAGAGTTCTGGACACTGCTTGGGATgggtaagtattgatagtaaagcaaatgatgctaacactggtaaatgaccctc Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg atattctactctcattggttcccactcttgctcccactcactgtgtgcagCTGGAAGAGAGGGAAATTGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCTACGAAGGGAGTCAGTGGATGGCCAAAGAGTTCTGGACACTGCTTGGGATgggtaagtattgatagtaaagcaaatgatgctaacactggtaaatgaccctg Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactctcattggttcccactcttgctcccactcactgtgtgcagCTGGAAGAGAGGGAAATTGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCTACGAAGGGAGTCAGTGGATGGCCAAAGAGTTCTGGACACTGCTTGGGATGGgtaagtattgatagtaaagcaaatgatgctaacactggtaaatgaccctc Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCA-GAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactctcattggttcccactcttgctcccactcactgtgtgcagCTGGAAGAGAGGGAAATTGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCTACGAAGGGAGTC-AGTGGATGGCCAAAGAGTTCTGGACACTGCTTGGGATGGgtaagtattgatagtaaagcaaatgatgctaacactggtaaatgaccctc Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCA-GAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactctcattggttcccactcttgctcccactcactgtgtgcagCTGGAAGAGAGGGAAATTGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCTACGAAGGGAGTC-AGTGGATGGCCAAAGAGTTCTGGACACTGCTTGGGATGGgtaagtattgatagtaaagcaaatgatgctaacactggtaaatgaccctc Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactctcattggttcccactcttgctcccactcactgtgtgcagCTGGAAGAGAGGGAAATTGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCTACGAAGGGAGTCAGTGGATGGCCAAAGAGTTCTGGACACTGCTTGGGATGGgtaagtattgatagtaaagcaaatgatgctaacactggtaaatgaccctc Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactctcattggttcccactcttgctcccactcactgtgtgcagCTGGAAGAGAGGGAAATTGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCTACGAAGGGAGTCAGTGGATGGCCAAAGAGTTCTGGACACTGCTTGGGATGGgtaagtattgatagtaaagcaaatgatgctaacactggtaaatgaccctc Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactctcattggttcccactcttgctcccactcactgtgtgcagCTGGAAGAGAGGGAAATTGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCTACGAAGGGAGTCAGTGGATGGCCAAAGAGTTCTGGACACTGCTTGGGATGGgtaagtattgatagtaaagcaaatgatgctaacactggtaaatgaccctc #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAG-CAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCCAGAGAC-TGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Pairagon CCCCTGTTGGAACAG-CAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCCAGAGAC-TGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCCAGAGACTGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCC-AACCTGGAGGAACTTCAGAAAAACag CCACACCTCTACTTGgtaccaggtcctttcaaaccgttgctcttcaccagGGCACTGAATGGAATGCTGCCCAACCTAG-GGAGCTCCAAAAGAATaggtaaggttgctggctgtgagtccttattgacctctcctctcagcttccca Alignment from CESAR CCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag CCACACCTCTACTTGgtatatggtcctttcaaaccgttgctcttcaccagGGCACTGAATGGAATGCTGCCCAACCTAGGGAGCTCCAAAAGAATaggtaaggttgctggctgtgagtccttattgacctctcctctcagcttccca Alignment from Spaln_aa2Genome CCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CCACACCTCTACTTGgtaccaggtcctttcaaaccgttgctcttcaccagGGCACTGAATGGAATGCTGCCCAACCTAGGGAGCTCCAAAAGAATAGgtaaggttgctggctgtgagtccttattgacctctcctctcagcttccca Alignment from Spaln_nt2Genome CCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCC-AACCTGGAGGAACTTCAGAAAAACAG CCACACCTCTACTTGgtaccaggtcctttcaaaccgttgctcttcaccagGGCACTGAATGGAATGCTGCCCAACCTAG-GGAGCTCCAAAAGAATAGgtaaggttgctggctgtgagtccttattgacctctcctctcagcttccca Alignment from Pairagon CCCCACCTCTACTT-----------------------------------GGGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CCACACCTCTACTTGGTACCAGGTCCTTTCAAACCGTTGCTCTTCACCAGGGCACTGAATGGAATGCTGCCCAACCTAGGGAGCTCCAAAAGAATAGgtaaggttgctggctgtgagtccttattgacctctcctctcagcttccca Alignment from Exonerate_protein2genome CCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CCACACCTCTACTTGgtaccaggtcctttcaaaccgttgctcttcaccagGGCACTGAATGGAATGCTGCCCAACCTAGGGAGCTCCAAAAGAATAGgtaaggttgctggctgtgagtccttattgacctctcctctcagcttccca Alignment from Exonerate_coding2genome CCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CCACACCTCTACTTGgtaccaggtcctttcaaaccgttgctcttcaccagGGCACTGAATGGAATGCTGCCCAACCTAGGGAGCTCCAAAAGAATAGgtaaggttgctggctgtgagtccttattgacctctcctctcagcttccca Alignment from GeneWise CCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CCACACCTCTACTTGgtaccaggtcctttcaaaccgttgctcttcaccagGGCACTGAATGGAATGCTGCCCAACCTAGGGAGCTCCAAAAGAATAGgtaaggttgctggctgtgagtccttattgacctctcctctcagcttccca #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGAC-CGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAAT atctctatcagcgataatacacttaaaccgtgtactttctcatgacgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGACTTTATTGACAATCAGATGTTGCTTCTCATGGCCCACCAGGATCCAGACAT-TCGCATCTACCCACACCTCTACTTGgtatatggtccttttgtgtgccctttcttcttcagGGCACTGAATGGAAT Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAAT atctctatcagcgataatacacttaaaccgtgtactttctcatgacgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGACTTTATTGACAATCAGATGTTGCTTCTCATGGCCCACCAGGATCCAGACATTCGCATCTACCCACACCTCTACTTGgtatatggtcctttcaaaccgttgctcttcaccagGGCACTGAATGGAAT Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAAT atctctatcagcgataatacacttaaaccgtgtactttctcatgacgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGACTTTATTGACAATCAGATGTTGCTTCTCATGGCCCACCAGGATCCAGACATTCGCATCTACCCACACCTCTACTTGgtatatggtccttttgtgtgccctttcttcttcagGGCACTGAATGGAAT Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAAT atctctatcagcgataatacacttaaaccgtgtactttctcatgacgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTT------ATATCGTGACTTTATTGACAATCAGATGTTGCTTCTCATGGCCCACCAGGATCCAGACATTCGCATCTACCCACACCTCTACTTGgtatatggtccttttgtgtgccctttcttcttcagGGCACTGAATGGAAT Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAAT atctctatcagcgataatacacttaaaccgtgtactttctcatgacgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTT------ATATCGTGACTTTATTGACAATCAGATGTTGCTTCTCATGGCCCACCAGGATCCAGACATTCGCATCTACCCACACCTCTACTTGgtatatggtccttttgtgtgccctttcttcttcagGGCACTGAATGGAAT Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAAT atctctatcagcgataatacacttaaaccgtgtactttctcatgacgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGACTTTATTGACAATCAGATGTTGCTTCTCATGGCCCACCAGGATCCAGACATTCGCATCTACCCACACCTCTACTTGgtatatggtccttttgtgtgccctttcttcttcagGGCACTGAATGGAAT Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAAT atctctatcagcgataatacacttaaaccgtgtactttctcatgacgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGACTTTATTGACAATCAGATGTTGCTTCTCATGGCCCACCAGGATCCAGACATTCGCATCTACCCACACCTCTACTTGgtatatggtccttttgtgtgccctttcttcttcagGGCACTGAATGGAAT Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAAT atctctatcagcgataatacacttaaaccgtgtactttctcatgacgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGACTTTATTGACAATCAGATGTTGCTTCTCATGGCCCACCAGGATCCAGACATTCGCATCTACCCACACCTCTACTTGgtatatggtccttttgtgtgccctttcttcttcagGGCACTGAATGGAAT #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACC-AGTGACCTGGACAGTGTCACTTCTAAAGAG catgtttgttgctactaactaacaggtaatatatatttgttctctttcaggGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAAGTGTTAGATACTCAGTG-TCTAGAGAGTGTTACTTCCAAAGAGgtagagaatcaagcaggctagctgccaattgttcctttctgactccccct Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG catgtttgttgctactaactaacaggtaatatatatttgttctctttcaggGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAAGTGTTAGATACTCAGTGTCTAGAGAGTGTTACTTCCAAAGAGgtagagaatcaagcaggctagctgccaattgttcctttctgactccccct Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG catgtttgttgctactaactaacaggtaatatatatttgttctctttcagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAAGTGTTAGATACTCAGTGTCTAGAGAGTGTTACTTCCAAAGAGgtagagaatcaagcaggctagctgccaattgttcctttctgactccccct Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACAC-CAGTGACCTGGACAGTGTCACTTCTAAAGAG catgtttgttgctactaactaacaggtaatatatatttgttctctttcagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAAGTGTTAGATACTCAGTG-TCTAGAGAGTGTTACTTCCAAAGAGgtagagaatcaagcaggctagctgccaattgttcctttctgactccccct Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACAC-CAGTGACCTGGACAGTGTCACTTCTAAAGAG catgtttgttgctactaactaacaggtaatatatatttgttctctttcagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAAGTGTTAGATACTCAGTG-TCTAGAGAGTGTTACTTCCAAAGAGgtagagaatcaagcaggctagctgccaattgttcctttctgactccccct Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG catgtttgttgctactaactaacaggtaatatatatttgttctctttcagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAAGTGTTAGATACTCAGTGTCTAGAGAGTGTTACTTCCAAAGAGgtagagaatcaagcaggctagctgccaattgttcctttctgactccccct Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG catgtttgttgctactaactaacaggtaatatatatttgttctctttcagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAAGTGTTAGATACTCAGTGTCTAGAGAGTGTTACTTCCAAAGAGgtagagaatcaagcaggctagctgccaattgttcctttctgactccccct Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG catgtttgttgctactaactaacaggtaatatatatttgttctctttcagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAAGTGTTAGATACTCAGTGTCTAGAGAGTGTTACTTCCAAAGAGgtagagaatcaagcaggctagctgccaattgttcctttctgactccccct #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCT-GGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagcAGCTTAAGTGTGACGTCTCGGTGGCGAAA-CCGAATCTTCAAGCCTCTCTCTATCCAGACTATGtggtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagcAGCTTAAGTGTGACGTCTCGGTGGCGAAACCGAATCTTCAAGCCTCTCTCTATCCAGACTATGtggtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTCGGTGGCGAAACCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTCGGTGGCGAAACCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTCGGTGGCGAAACCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTCGGTGGCGAAACCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTCGGTGGCGAAACCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTCGGTGGCGAAACCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca #### Stambpl1_ID6902_9 --> 1 - 0 Original Alignment cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTT-GAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagcACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTCGAGGTTT-TACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from CESAR cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagcACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTCGAGGTTTTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Spaln_aa2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTCGAGGTTTTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Spaln_nt2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTCGAGGTTTTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Pairagon CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTCGAGGTTTTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Exonerate_protein2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTCGAGGTTTTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Exonerate_coding2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTCGAGGTTTTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from GeneWise CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTCGAGGTTTTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAG-AGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagctGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGCAGTGGTA-TCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from CESAR ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagctGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGCAGTGGTATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGCAGTGGTATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGCAGTGGTATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Pairagon CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAG-AGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGCAGTGGT-ATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGCAGTGGTATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGCAGTGGTATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGCAGTGGTATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gggggctcaaaggtgactgactatatcatgacgtcttcgttcctccttagAATGGAATCCAACACAACCAAAC-AGCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTaggtgagttgtaggggtcttggtgggtggaatgctttttgaaatttgtagag Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gggggctcaaaggtgactgactatatcatgacgtcttcgttcctccttagAATGGAATCCAACACAACCAAACAGCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTaggtgagttgtaggggtcttggtgggtggaatgctttttgaaatttgtagag Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gggggctcaaaggtgactgactatatcatgacgtcttcgttcctccttagAATGGAATCCAACACAACCAAACAGCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgagttgtaggggtcttggtgggtggaatgctttttgaaatttgtagag Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gggggctcaaaggtgactgactatatcatgacgtcttcgttcctccttagAATGGAATCCAACACAACCAAACAGCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgagttgtaggggtcttggtgggtggaatgctttttgaaatttgtagag Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gggggctcaaaggtgactgactatatcatgacgtcttcgttcctccttagAATGGAATCCAACACAACCAAACAGCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgagttgtaggggtcttggtgggtggaatgctttttgaaatttgtagag Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gggggctcaaaggtgactgactatatcatgacgtcttcgttcctccttagAATGGAATCCAACACAACCAAACAGCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgagttgtaggggtcttggtgggtggaatgctttttgaaatttgtagag Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gggggctcaaaggtgactgactatatcatgacgtcttcgttcctccttagAATGGAATCCAACACAACCAAACAGCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgagttgtaggggtcttggtgggtggaatgctttttgaaatttgtagag Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gggggctcaaaggtgactgactatatcatgacgtcttcgttcctccttagAATGGAATCCAACACAACCAAACAGCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgagttgtaggggtcttggtgggtggaatgctttttgaaatttgtagag #### Stx5a_ID2336_8 --> 2 - 0 Original Alignment gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGC-CAGCAGCTTCAGCTCATTGATGAGCAG aacgttgaacttccaccaagcacctgaatttctttctctctccattgcaggaGGGGGTACCATAATCTTGGGAGCAGAATCACAAGCTTCCAGAGATGTAGCAATTGACATGATGGACCCTAGAACAAGCCCAACAGC-GCAGGTCATTGATGAACAGgtgagctataccacattgtgtgaagctgacctttaaaaaccagggttccc Alignment from CESAR gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aacgttgaacttccaccaagcacctgaatttctttctctctccattgcaggaGGGGGTACCATAATCTTGGGAGCAGAATCACAAGCTTCCAGAGATGTAGCAATTGACATGATGGACCCTAGAACAAGCCCAACAGCGCAGGTCATTGATGAACAGgtgagctataccacattgtgtgaagctgacctttaaaaaccagggttccc Alignment from Spaln_aa2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aacgttgaacttccaccaagcacctgaatttctttctctctccattgcagGAGGGGGTACCATAATCTTGGGAGCAGAATCACAAGCTTCCAGAGATGTAGCAATTGACATGATGGACCCTAGAACAAGCCCAACAGCGCAGGTCATTGATGAACAGgtgagctataccacattgtgtgaagctgacctttaaaaaccagggttccc Alignment from Spaln_nt2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aacgttgaacttccaccaagcacctgaatttctttctctctccattgcagGAGGGGGTACCATAATCTTGGGAGCAGAATCACAAGCTTCCAGAGATGTAGCAATTGACATGATGGACCCTAGAACAAGCCCAACAGCGCAGGTCATTGATGAACAGgtgagctataccacattgtgtgaagctgacctttaaaaaccagggttccc Alignment from Pairagon GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAG-CCAGCAGCTTCAGCTCATTGATGAGCAG aacgttgaacttccaccaagcacctgaatttctttctctctccattgcagGAGGGGGTACCATAATCTTGGGAGCAGAATCACAAGCTTCCAGAGATGTAGCAATTGACATGATGGACCCTAGAACAAGCCCAACAGC-GCAGGTCATTGATGAACAGgtgagctataccacattgtgtgaagctgacctttaaaaaccagggttccc Alignment from Exonerate_protein2genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aacgttgaacttccaccaagcacctgaatttctttctctctccattgcagGAGGGGGTACCATAATCTTGGGAGCAGAATCACAAGCTTCCAGAGATGTAGCAATTGACATGATGGACCCTAGAACAAGCCCAACAGCGCAGGTCATTGATGAACAGgtgagctataccacattgtgtgaagctgacctttaaaaaccagggttccc Alignment from Exonerate_coding2genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aacgttgaacttccaccaagcacctgaatttctttctctctccattgcagGAGGGGGTACCATAATCTTGGGAGCAGAATCACAAGCTTCCAGAGATGTAGCAATTGACATGATGGACCCTAGAACAAGCCCAACAGCGCAGGTCATTGATGAACAGgtgagctataccacattgtgtgaagctgacctttaaaaaccagggttccc Alignment from GeneWise GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aacgttgaacttccaccaagcacctgaatttctttctctctccattgcagGAGGGGGTACCATAATCTTGGGAGCAGAATCACAAGCTTCCAGAGATGTAGCAATTGACATGATGGACCCTAGAACAAGCCCAACAGCGCAGGTCATTGATGAACAGgtgagctataccacattgtgtgaagctgacctttaaaaaccagggttccc #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATC-CAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaaattggcagtaaccttaaatatgatttgtattttctcaacagGTCCTGTACATACCAGGCCTTTG-CCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagttagggccaggagtcagggcaaggtctcttaatatcaatgctgtt Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaaattggcagtaaccttaaatatgatttgtattttctcaacagGTCCTGTACATACCAGGCCTTTGCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagttagggccaggagtcagggcaaggtctcttaatatcaatgctgtt Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaaattggcagtaaccttaaatatgatttgtattttctcaacagGTCCTGTACATACCAGGCCTTTGCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagttagggccaggagtcagggcaaggtctcttaatatcaatgctgtt Alignment from Spaln_nt2Genome GTCCTGTACAT-CCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaaattggcagtaaccttaaatatgatttgtattttctcaacagGTCCTGTACATACCAGGCCTTTG-CCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagttagggccaggagtcagggcaaggtctcttaatatcaatgctgtt Alignment from Pairagon GTCCTGTACAT-CCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaaattggcagtaaccttaaatatgatttgtattttctcaacagGTCCTGTACATACCAGGCCTTTG-CCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagttagggccaggagtcagggcaaggtctcttaatatcaatgctgtt Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaaattggcagtaaccttaaatatgatttgtattttctcaacagGTCCTGTACATACCAGGCCTTTGCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagttagggccaggagtcagggcaaggtctcttaatatcaatgctgtt Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaaattggcagtaaccttaaatatgatttgtattttctcaacagGTCCTGTACATACCAGGCCTTTGCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagttagggccaggagtcagggcaaggtctcttaatatcaatgctgtt Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaaattggcagtaaccttaaatatgatttgtattttctcaacagGTCCTGTACATACCAGGCCTTTGCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagttagggccaggagtcagggcaaggtctcttaatatcaatgctgtt #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCC-TTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCCTTTACTG-TATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctttttctgtaata Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCCTTTACTGTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctctgattctgctt Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCCTTTACTGTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctttttctgtaata Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCCTTTACTGTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctttttctgtaata Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTT------TTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTG------ACCCTTTACTGTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctttttctgtaata Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCCTTTACTGTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctttttctgtaata Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCCTTTACTGTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctttttctgtaata Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCCTTTACTGTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctttttctgtaata #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCT-TATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTCTATCACA-CGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTCTATCACACGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTCTATCACACGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTCTATCACACGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCT-TATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTCTATCACA-CGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTCTATCACACGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Exonerate_coding2genome TTCCACTGCCGCATCGTCTCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatGTCATTGTTATTCATTTAGCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTCTATCACACGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTCTATCACACGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACC-ATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg gcactcttgatatattatggttcagatctaggtgcatgctcatttaacagTATGCCATTCTGATGACCCATGGCACTCA-TATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTAAGAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtgagcattcccagtcagtctagaggtgcttcacagtcaatctgcaggtg Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg gcactcttgatatattatggttcagatctaggtgcatgctcatttaacagTATGCCATTCTGATGACCCATGGCACTCATATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTAAGAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtgagcattcccagtcagtctagaggtgcttcacagtcaatctgcaggtg Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gcactcttgatatattatggttcagatctaggtgcatgctcatttaacagTATGCCATTCTGATGACCCATGGCACTCATATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTAAGAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtgagcattcccagtcagtctagaggtgcttcacagtcaatctgcaggtg Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gcactcttgatatattatggttcagatctaggtgcatgctcatttaacagTATGCCATTCTGATGACCCATGGCACTCATATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTAAGAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtgagcattcccagtcagtctagaggtgcttcacagtcaatctgcaggtg Alignment from Pairagon TACGCCATTCTGATGAC----------CATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gcactcttgatatattatggttcagatctaggtgcatgctcatttaacagTATGCCATTCTGATGACCCATGGCACTCAT----------ATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTAAGAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtgagcattcccagtcagtctagaggtgcttcacagtcaatctgcaggtg Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gcactcttgatatattatggttcagatctaggtgcatgctcatttaacagTATGCCATTCTGATGACCCATGGCACTCATATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTAAGAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtgagcattcccagtcagtctagaggtgcttcacagtcaatctgcaggtg Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gcactcttgatatattatggttcagatctaggtgcatgctcatttaacagTATGCCATTCTGATGACCCATGGCACTCATATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTAAGAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtgagcattcccagtcagtctagaggtgcttcacagtcaatctgcaggtg Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gcactcttgatatattatggttcagatctaggtgcatgctcatttaacagTATGCCATTCTGATGACCCATGGCACTCATATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTAAGAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtgagcattcccagtcagtctagaggtgcttcacagtcaatctgcaggtg #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACA-CTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg caaatactaagccggtagctaggcctgaagattcactctgccatttgcagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACCTACTGGATG-TGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGgggtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg caaatactaagccggtagctaggcctgaagattcactctgccatttgcagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACCTACTGGATGTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGgggtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACCTACTGGATGTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACCTACTGGATGTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACA-CTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACCTACTGGATG-TGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACCTACTGGATGTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACCTACTGGATGTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACCTACTGGATGTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGC-TCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagaCCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGG-TCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTggtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagaCCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTggtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGC-TCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGG-TCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAG-CTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGG-TCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCT-ACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTCACAGGAGCAA-AGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgaggcctgtagtgacctcataacagtgcccacgatgtgttaaaactgg Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTCACAGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgaggcctgtagtgacctcataacagtgcccacgctaatattcttcttt Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTCACAGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgatgtgttaaaactgg Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTCACAGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgatgtgttaaaactgg Alignment from Pairagon GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCT-ACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTCACAGGAGCAA-AGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgatgtgttaaaactgg Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTCACAGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgatgtgttaaaactgg Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTCACAGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgatgtgttaaaactgg Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTCACAGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgatgtgttaaaactgg #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCCGGTGCT-GCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatgcccctctctccatttgcagGAACTG Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCCGGTGCTGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctacattctgtccattgctccagGAACTG Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCCGGTGCTGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatgcccctctctccatttgcagGAACTG Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCCGGTGCTGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatgcccctctctccatttgcagGAACTG Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTG-CCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCCGGTGCT-GCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatgcccctctctccatttgcagGAACTG Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCCGGTGCTGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatgcccctctctccatttgcagGAACTG Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCCGGTGCTGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatgcccctctctccatttgcagGAACTG Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCCGGTGCTGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatgcccctctctccatttgcagGAACTG #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCC-ATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagagCTGTCGGAGGTCCTTTGGGCACATGGTGATGC-CATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCC-ATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagagCTGTCGGAGGTCCTTTGGGCACATGGTGATG-CCATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCACATGGTGATGCCATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGC-CATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCACATGGTGATGC-CATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGC-CATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCACATGGTGATGC-CATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCACATGGTGATGCCATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGGGTGGAG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCACATGGTGATGCCATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGGTGAGAGtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCACATGGTGATGCCATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAG-CTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCCTACTTGCTT-CCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCCTACTTGCTTCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCCTACTTGCTTCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCCTACTTGCTTCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCCTACTTGCTTCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCCTACTTGCTTCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCCTACTTGCTTCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCCTACTTGCTTCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGT-CTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcaggCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCCTC------T-TCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcaggCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCCTCTT------CTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCCTCTT------CTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCCTCTT------CTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCATTATC------CACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCCTCTT------CTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCATTATC------CACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGC------CCTCTTCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGC------CCTCTTCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCCTCTT------CTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATG-TCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGAAGACACTCAGTCA-CCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGgtgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGAAGACACTCAGTCACCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGgtgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGAAGACACTCAGTCACCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGAAGACACTCAGTCACCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATG-TCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGAAGACACTCAGTCA-CCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGAAGACACTCAGTCACCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGAAGACACTCAGTCACCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGAAGACACTCAGTCACCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACC-ACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTCACTA-CTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGctgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTCACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGctgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTCACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCAC-CACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTCACTACTTT-CCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGC----CACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTCACTAC----TTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTGTCAGTCTATAACGGTGGGTTCATGTACAGGTTCTGATATGAAGCATAGC Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTCACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTCACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTCACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGCTTCAGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCG-GAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AACTTCAAGAGgtatgttcctcaaggattcattctttcctgtgatcccagGTCCTAGGGGAGACAGACCGGTTCTTAAGTCAAGTGCTTGGGCGAGTGCAGCAATTACTTCCCCCATGGCAGGTGCAGATCCATAAGATGAAAGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTACACGAGG-GTGGTCTGCTGCACGAGACCTACCTACAGTGCAACAGGCCTTACAAAGTGGCTCAgtaagtgtccagggccttattgaagtacccattaagcaagagaggatcca Alignment from CESAR AGCTTCAGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AACTTCAAGAGgtaggttcctcaaggattcattctttcctgtgatcccagGTCCTAGGGGAGACAGACCGGTTCTTAAGTCAAGTGCTTGGGCGAGTGCAGCAATTACTTCCCCCATGGCAGGTGCAGATCCATAAGATGAAAGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTACACGAGGGTGGTCTGCTGCACGAGACCTACCTACAGTGCAACAGGCCTTACAAAGTGGCTCAgtaagtgtccagggccttattgaagtacccattaagcaagagaggatcca Alignment from Spaln_aa2Genome AGCTTCAGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AACTTCAAGAGgtatgttcctcaaggattcattctttcctgtgatcccagGTCCTAGGGGAGACAGACCGGTTCTTAAGTCAAGTGCTTGGGCGAGTGCAGCAATTACTTCCCCCATGGCAGGTGCAGATCCATAAGATGAAAGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTACACGAGGGTGGTCTGCTGCACGAGACCTACCTACAGTGCAACAGGCCTTACAAAGTGGCTCAgtaagtgtccagggccttattgaagtacccattaagcaagagaggatcca Alignment from Spaln_nt2Genome AGCTTCAGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AACTTCAAGAGgtatgttcctcaaggattcattctttcctgtgatcccagGTCCTAGGGGAGACAGACCGGTTCTTAAGTCAAGTGCTTGGGCGAGTGCAGCAATTACTTCCCCCATGGCAGGTGCAGATCCATAAGATGAAAGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTACACGAGGGTGGTCTGCTGCACGAGACCTACCTACAGTGCAACAGGCCTTACAAAGTGGCTCAgtaagtgtccagggccttattgaagtacccattaagcaagagaggatcca Alignment from Pairagon AGCTTCAGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AACTTCAAGAGgtatgttcctcaaggattcattctttcctgtgatcccagGTCCTAGGGGAGACAGACCGGTTCTTAAGTCAAGTGCTTGGGCGAGTGCAGCAATTACTTCCCCCATGGCAGGTGCAGATCCATAAGATGAAAGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTACACGAGGGTGGTCTGCTGCACGAGACCTACCTACAGTGCAACAGGCCTTACAAAGTGGCTCAgtaagtgtccagggccttattgaagtacccattaagcaagagaggatcca Alignment from Exonerate_protein2genome AGCTTCAGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AACTTCAAGAGgtatgttcctcaaggattcattctttcctgtgatcccagGTCCTAGGGGAGACAGACCGGTTCTTAAGTCAAGTGCTTGGGCGAGTGCAGCAATTACTTCCCCCATGGCAGGTGCAGATCCATAAGATGAAAGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTACACGAGGGTGGTCTGCTGCACGAGACCTACCTACAGTGCAACAGGCCTTACAAAGTGGCTCAgtaagtgtccagggccttattgaagtacccattaagcaagagaggatcca Alignment from Exonerate_coding2genome AGCTTCAGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AACTTCAAGAGgtatgttcctcaaggattcattctttcctgtgatcccagGTCCTAGGGGAGACAGACCGGTTCTTAAGTCAAGTGCTTGGGCGAGTGCAGCAATTACTTCCCCCATGGCAGGTGCAGATCCATAAGATGAAAGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTACACGAGGGTGGTCTGCTGCACGAGACCTACCTACAGTGCAACAGGCCTTACAAAGTGGCTCAgtaagtgtccagggccttattgaagtacccattaagcaagagaggatcca Alignment from GeneWise AGCTTCAGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AACTTCAAGAGgtatgttcctcaaggattcattctttcctgtgatcccagGTCCTAGGGGAGACAGACCGGTTCTTAAGTCAAGTGCTTGGGCGAGTGCAGCAATTACTTCCCCCATGGCAGGTGCAGATCCATAAGATGAAAGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTACACGAGGGTGGTCTGCTGCACGAGACCTACCTACAGTGCAACAGGCCTTACAAAGTGGCTCAgtaagtgtccagggccttattgaagtacccattaagcaagagaggatcca #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGC-CAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagccTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCCAGA-CCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagccTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCCAGACCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCCAGACCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCCAGACCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCCAGACCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCCAGACCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCCAGACCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCCAGACCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCC-GTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTCGTAAGTGCAT-CCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTagtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTCGTAAGTGCATCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTagtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTCGTAAGTGCATCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Spaln_nt2Genome CTCAACGAATC-CGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTCGTAAGTG-CATCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Pairagon CTCAACGAATC-CGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTCGTAAGTGCA-TCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTCGTAAGTGCATCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTCGTAAGTGCATCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTCGTAAGTGCATCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGAC-CTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcaggaTTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCCTATCCA-TAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcaggaTTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCCTATCCATAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCCTATCCATAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCCTATCCATAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCCTATCCATAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCCTATCCATAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCCTATCCATAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCCTATCCATAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGC-TGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg gccgcttaaagataccattttttctgttcagcctgttgtttattctgtagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGG-GAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAggtaatttatgtgtatgctggctcttgtatcctctagcgatgttttctcag Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg gccgcttaaagataccattttttctgttcagcctgttgtttattctgtagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAggtaatttatgtgtatgctggctcttgtatcctctagcgatgttttctcag Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG gccgcttaaagataccattttttctgttcagcctgttgtttattctgtagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtaatttatgtgtatgctggctcttgtatcctctagcgatgttttctcag Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG gccgcttaaagataccattttttctgttcagcctgttgtttattctgtagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtaatttatgtgtatgctggctcttgtatcctctagcgatgttttctcag Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAG-CTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG gccgcttaaagataccattttttctgttcagcctgttgtttattctgtagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGG-GAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtaatttatgtgtatgctggctcttgtatcctctagcgatgttttctcag Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG gccgcttaaagataccattttttctgttcagcctgttgtttattctgtagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtaatttatgtgtatgctggctcttgtatcctctagcgatgttttctcag Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG gccgcttaaagataccattttttctgttcagcctgttgtttattctgtagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtaatttatgtgtatgctggctcttgtatcctctagcgatgttttctcag Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG gccgcttaaagataccattttttctgttcagcctgttgtttattctgtagGCTGGGGATCCCATCCTGACCTACTACCCAAGCCTGGTCCGTGGGAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtaatttatgtgtatgctggctcttgtatcctctagcgatgttttctcag #### Tjp2_ID5277_10 --> 2 - 2 Original Alignment ttCCTCAACCCAGAACAGCTCCAAGA-GTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATgg gcatacacataggttgaacatggttgccatgcttcctttcttcttttcagttCCTCAACCCAGGACAGCACCTAGACGTTTTTC-TCGTCCTAGTCCTGAGGATGAAGCCATTTATgggtgagcagcctacctttgaaactttgtattatgcctctccagccattacc Alignment from CESAR ttCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATgg gcatacacataggttgaacatggttgccatgcttcctttcttcttttcagttCCTCAACCCAGGACAGCACCTAGACGTTTTTCTCGTCCTAGTCCTGAGGATGAAGCCATTTATgggtgagcagcctacctttgaaactttgtattatgcctctccagccattacc Alignment from Spaln_aa2Genome TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacataggttgaacatggttgccatgcttcctttcttcttttcagTTCCTCAACCCAGGACAGCACCTAGACGTTTTTCTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtgagcagcctacctttgaaactttgtattatgcctctccagccattacc Alignment from Spaln_nt2Genome TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacataggttgaacatggttgccatgcttcctttcttcttttcagTTCCTCAACCCAGGACAGCACCTAGACGTTTTTCTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtgagcagcctacctttgaaactttgtattatgcctctccagccattacc Alignment from Pairagon TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacataggttgaacatggttgccatgcttcctttcttcttttcagTTCCTCAACCCAGGACAGCACCTAGACGTTTTTCTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtgagcagcctacctttgaaactttgtattatgcctctccagccattacc Alignment from Exonerate_protein2genome TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacataggttgaacatggttgccatgcttcctttcttcttttcagTTCCTCAACCCAGGACAGCACCTAGACGTTTTTCTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtgagcagcctacctttgaaactttgtattatgcctctccagccattacc Alignment from Exonerate_coding2genome TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacataggttgaacatggttgccatgcttcctttcttcttttcagTTCCTCAACCCAGGACAGCACCTAGACGTTTTTCTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtgagcagcctacctttgaaactttgtattatgcctctccagccattacc Alignment from GeneWise TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacataggttgaacatggttgccatgcttcctttcttcttttcagTTCCTCAACCCAGGACAGCACCTAGACGTTTTTCTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtgagcagcctacctttgaaactttgtattatgcctctccagccattacc #### Tjp2_ID5278_9 --> 1 - 1 Original Alignment cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGG-GAGCCCAGGTACCAGGAAGAAGGCCCAg gttattcagtaaagcattggccatggatactaggattctatcccttctagcTCTAAAGAAGAGACATCAGGCAGACTATCAAGAATGGGTGCCATGCCCACACCGTTCAAATACACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAGCGAGCCAAGGT-CCAGCAAAAAGGCCCAggtgagttgttatgctattcttttccatgtatcttacgcataggcaggcta Alignment from CESAR cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg gttattcagtaaagcattggccatggatactaggattctatcccttctagcTCTAAAGAAGAGACATCAGGCAGACTATCAAGAATGGGTGCCATGCCCACACCGTTCAAATACACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAGCGAGCCAAGGTCCAGCAAAAAGGCCCAggtgagttgttatgctattcttttccatgtatcttacgcataggcaggcta Alignment from Spaln_aa2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gttattcagtaaagcattggccatggatactaggattctatcccttctagCTCTAAAGAAGAGACATCAGGCAGACTATCAAGAATGGGTGCCATGCCCACACCGTTCAAATACACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAGCGAGCCAAGGTCCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttccatgtatcttacgcataggcaggcta Alignment from Spaln_nt2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGG-GAGCCCAGGTACCAGGAAGAAGGCCCAG gttattcagtaaagcattggccatggatactaggattctatcccttctagCTCTAAAGAAGAGACATCAGGCAGACTATCAAGAATGGGTGCCATGCCCACACCGTTCAAATACACAGGTGACCTCACAGCTGCTGGAGTTA---TGGCCAGTAAGCGAGCCAAGGT-CCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttccatgtatcttacgcataggcaggcta Alignment from Pairagon CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGG-GAGCCCAGGTACCAGGAAGAAGGCCCAG gttattcagtaaagcattggccatggatactaggattctatcccttctagCTCTAAAGAAGAGACATCAGGCAGACTATCAAGAATGGGTGCCATGCCCACACCGTTCAAATACACAGGTGACCTCACAGCTGCTGGAGTTAT---GGCCAGTAAGCGAGCCAAGGT-CCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttccatgtatcttacgcataggcaggcta Alignment from Exonerate_protein2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gttattcagtaaagcattggccatggatactaggattctatcccttctagCTCTAAAGAAGAGACATCAGGCAGACTATCAAGAATGGGTGCCATGCCCACACCGTTCAAATACACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAGCGAGCCAAGGTCCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttccatgtatcttacgcataggcaggcta Alignment from Exonerate_coding2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gttattcagtaaagcattggccatggatactaggattctatcccttctagCTCTAAAGAAGAGACATCAGGCAGACTATCAAGAATGGGTGCCATGCCCACACCGTTCAAATACACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAGCGAGCCAAGGTCCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttccatgtatcttacgcataggcaggcta Alignment from GeneWise CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gttattcagtaaagcattggccatggatactaggattctatcccttctagCTCTAAAGAAGAGACATCAGGCAGACTATCAAGAATGGGTGCCATGCCCACACCGTTCAAATACACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAGCGAGCCAAGGTCCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttccatgtatcttacgcataggcaggcta #### Tle4_ID3629_10 --> 0 - 0 Original Alignment GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTA-GTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTACGTTG-GGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from CESAR GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTACGTTGGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Spaln_aa2Genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTACGTTGGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Spaln_nt2Genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTACGTTGGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Pairagon GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTACGTTGGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Exonerate_protein2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTACGTTGGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Exonerate_coding2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTACGTTGGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from GeneWise GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTACGTTGGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATG-GTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcaggtCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGCGTACAGC-TCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTggtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcaggtCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGCGTACAGCTCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTggtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGCGTACAGCTCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGCGTACAGCTCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGCGTACAGCTCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGCGTACAGCTCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGCGTACAGCTCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGCGTACAGCTCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg taggcttggtgttttaaccttccttctcggtggttatcattcttctacagttATTGGTTATTATATCTTCCCGAG-GGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAggtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from CESAR ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg taggcttggtgttttaaccttccttctcggtggttatcattcttctacagttATTGGTTATTATATCTTCCCGAGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAggtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCCGAGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCCGAGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Pairagon TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCCGAGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCCGAGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCCGAGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCCGAGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCATGGACA-CCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccacccctgccattcttattacgctttctttttgtttcttatccttagcTGCTCTGAAGCACAGAAGACTGCTTGGACACCCTTCAG-AACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaagttgcaggtatccataaagagaaatcaataagcttgactctgtgct Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccacccctgccattcttattacgctttctttttgtttcttatccttagcTGCTCTGAAGCACAGAAGACTGCTTGGACACCCTTCAGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaagttgcaggtatccataaagagaaatcaataagcttgactctgtgct Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccacccctgccattcttattacgctttctttttgtttcttatccttagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCCTTCAGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaagttgcaggtatccataaagagaaatcaataagcttgactctgtgct Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccacccctgccattcttattacgctttctttttgtttcttatccttagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCCTTCAGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaagttgcaggtatccataaagagaaatcaataagcttgactctgtgct Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccacccctgccattcttattacgctttctttttgtttcttatccttagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCCTTCAGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaagttgcaggtatccataaagagaaatcaataagcttgactctgtgct Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccacccctgccattcttattacgctttctttttgtttcttatccttagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCCTTCAGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaagttgcaggtatccataaagagaaatcaataagcttgactctgtgct Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccacccctgccattcttattacgctttctttttgtttcttatccttagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCCTTCAGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaagttgcaggtatccataaagagaaatcaataagcttgactctgtgct Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccacccctgccattcttattacgctttctttttgtttcttatccttagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCCTTCAGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaagttgcaggtatccataaagagaaatcaataagcttgactctgtgct #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCA---CAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGC-CAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgttagaagggaacttctctgctgctattcttcatgtctctttctagGTCCCTGAGTTGGAGCTGACACCCCTGGACACACCACAACAAGCCCTGCCTCTAGCACTAGTCCACGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCCAAGGAA-GACATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTggtaggttctaattaacctatcatgatgcagggagagacagagcctcattc Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCA---CAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgttagaagggaacttctctgctgctattcttcatgtctctttctagGTCCCTGAGTTGGAGCTGACACCCCTGGACACACCACAACAAGCCCTGCCTCTAGCACTAGTCCACGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCCAAGGAAGACATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTggtaggttctaattaacctatcatgatgcagggagagacagagcctcattc Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCA---CAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggaacttctctgctgctattcttcatgtctctttctagGTCCCTGAGTTGGAGCTGACACCCCTGGACACACCACAACAAGCCCTGCCTCTAGCACTAGTCCACGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGGTCACATCCAAGGAAGACATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTGgtaggttctaattaacctatcatgatgcagggagagacagagcctcattc Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGA---CACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGA---AGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACG-CCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggaacttctctgctgctattcttcatgtctctttctagGTCCCTGAGTTGGAGCTGACACCCCTGGACACACCACAACAAGCCCTGCCTCTAGCACTAGTCCACGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGG---GTCACATCCAAGGAA-GACATGCAATCATCTCGCTTCAGGATTGCC---AGACCCAGGCACCATCAGTGgtaggttctaattaacctatcatgatgcagggagagacagagcctcattc Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACC---ACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATC-----------------CACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggaacttctctgctgctattcttcatgtctctttctagGTCCCTGAGTTGGAGCTGACACCCCTGGACACACCACAACAAGCCCTGCCTCTAGCACTAGTCCACGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGGT--------------------CACATCCAAGGAAGACATGCAATCATCTCGCTTCAGGATTGCC---AGACCCAGGCACCATCAGTGgtaggttctaattaacctatcatgatgcagggagagacagagcctcattc Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCA---CAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggaacttctctgctgctattcttcatgtctctttctagGTCCCTGAGTTGGAGCTGACACCCCTGGACACACCACAACAAGCCCTGCCTCTAGCACTAGTCCACGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCCAAGGAAGACATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTGgtaggttctaattaacctatcatgatgcagggagagacagagcctcattc Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCA---CAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCGGC gaatgttagaagggaacttctctgctgctattcttcatgtctctttctagGTCCCTGAGTTGGAGCTGACACCCCTGGACACACCACAACAAGCCCTGCCTCTAGCACTAGTCCACGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCCAAGGAAGACATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTGGTaggttctaattaacctatcatgatgcagggagagacagagcctcattc Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggaacttctctgctgctattcttcatgtctctttctagGTCCCTGAGTTGGAGCTGACACCCCTGGACACACCACAACAAGCCCTGCCTCTAGCACTAGTCCACGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCCAAGGAAGACATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTGgtaggttctaattaacctatcatgatgcagggagagacagagcctcattc #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATC-GATGGACCCCTAGCCCTCACAg gagagacagagcctcattccaggtgttcacactttgtctttcctctgcaggcATTTGCCCAAAT------GTAACAGTGTTTATTCGATGGAC-ACTAGCTCTCACAggtaagtatcaccccccagggctggctgcatcacactcacagaagaaagtg Alignment from CESAR gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg gagagacagagcctcattccaggtgttcacactttgtctttcctctgcaggcATTTGCCCAAAT------GTAACAGTGTTTATTCGATGGACACTAGCTCTCACAggtaagtatcaccccccagggctggctgcatcacactcacagaagaaagtg Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG gagagacagagcctcattccaggtgttcacactttgtctttcctctgcagGCATTTGCCCAAAT------GTAACAGTGTTTATTCGATGGACACTAGCTCTCACAGgtaagtatcaccccccagggctggctgcatcacactcacagaagaaagtg Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCAT-CGATGGACCCCTAGCCCTCACAG gagagacagagcctcattccaggtgttcacactttgtctttcctctgcagGCATTTGCCCAAAT------GTAACAGTGTTTATTCGATGGA-CACTAGCTCTCACAGgtaagtatcaccccccagggctggctgcatcacactcacagaagaaagtg Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCA-TCGATGGACCCCTAGCCCTCACAG gagagacagagcctcattccaggtgttcacactttgtctttcctctgcagGCATTTGCCCAAAT------GTAACAGTGTTTATTCGATGGA-CACTAGCTCTCACAGgtaagtatcaccccccagggctggctgcatcacactcacagaagaaagtg Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGT gagagacagagcctcattccaggtgttcacactttgtctttcctctgcaggcatttgcccaaatgtaacagtgtttattcgatggacactagctctcacaggtaagtatcaccccccagggctggctgcatcacACTCACAGAAGAAAGTG Alignment from Exonerate_coding2genome GCATTCGTCCAAATTGT gagagacagagcctcattccaggtgttcacactttgtctttcctctgcaggcatttgcccaaatgtaacagtgtttattcgatggacactagctctcacaggtaagtatcaccccccagggctggctgcatcacACTCACAGAAGAAAGTG Alignment from GeneWise TCGTCCAAA gagagacagagcctcattccaggtgttcacactttgtctttcctctgcaggcatttgcccaaatgtaacagtgtttattcgatggacactagctctcacaggtaagtatcaccccccagggctggctgcatcacactcacagAAGA---AA #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAG-AGCACCCCCCGGAAGCACag atttagaacaaggacggatctcacttcctgacttcatcacctgcccacagACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAACAGCA-TCCCCGGAAGCACaggtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag atttagaacaaggacggatctcacttcctgacttcatcacctgcccacagACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAACAGCATCCCCGGAAGCACaggtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccacagACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAACAGCATCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Spaln_nt2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAACAGCATCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAACAGCATCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAACAGCATCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAACAGCATCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAACAGCATCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc #### Tut1_ID2554_7 --> 2 - 1 Original Alignment gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTG-TTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg acacaaagacttggtcttgtaattagctttcctcctctgtttcctcccaggaGGTGGCCCACTACTCAACAATTAT---GTAACCTTGCTTGGTGA-CTACCTGCTTCAGACTAGAGACCCTCCAGTACTACCTAGTGTAGCCCAGCTAACCCAGAGGGCAggtaagtgatggcctctacactctgtaacccagacactctggcaattccct Alignment from CESAR gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg acacaaagacttggtcttgtaattagctttcctcctctgtttcctcccaggaGGTGGCCCACTACTCAACAATTAT---GTAACCTTGCTTGGTGACTACCTGCTTCAGACTAGAGACCCTCCAGTACTACCTAGTGTAGCCCAGCTAACCCAGAGGGCAggtaagtgatggcctctacactctgtaacccagacactctggcaattccct Alignment from Spaln_aa2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctttcctcctctgtttcctcccagGAGGTGGCCCACTACTCAACAATTAT---GTAACCTTGCTTGGTGACTACCTGCTTCAGACTAGAGACCCTCCAGTACTACCTAGTGTAGCCCAGCTAACCCAGAGGGCAGgtaagtgatggcctctacactctgtaacccagacactctggcaattccct Alignment from Spaln_nt2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTG-TTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctttcctcctctgtttcctcccagGAGGTGGCCCACTACTCAACAATTATG---TAACCTTGCTTGGTGA-CTACCTGCTTCAGACTAGAGACCCTCCAGTACTACCTAGTGTAGCCCAGCTAACCCAGAGGGCAGgtaagtgatggcctctacactctgtaacccagacactctggcaattccct Alignment from Pairagon GAGGTGGCCCCCTTCTCAATAACTACG---CCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctttcctcctctgtttcctcccagGAGGTGGCCCACTACTCAACAATTATGTAACCTTGC-----TTGGTGA-CTACCTGCTTCAGACTAGAGACCCTCCAGTACTACCTAGTGTAGCCCAGCTAACCCAGAGGGCAGgtaagtgatggcctctacactctgtaacccagacactctggcaattccct Alignment from Exonerate_protein2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctttcctcctctgtttcctcccagGAGGTGGCCCACTACTCAACAATTAT---GTAACCTTGCTTGGTGACTACCTGCTTCAGACTAGAGACCCTCCAGTACTACCTAGTGTAGCCCAGCTAACCCAGAGGGCAGgtaagtgatggcctctacactctgtaacccagacactctggcaattccct Alignment from Exonerate_coding2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctttcctcctctgtttcctcccagGAGGTGGCCCACTACTCAACAATTAT---GTAACCTTGCTTGGTGACTACCTGCTTCAGACTAGAGACCCTCCAGTACTACCTAGTGTAGCCCAGCTAACCCAGAGGGCAGgtaagtgatggcctctacactctgtaacccagacactctggcaattccct Alignment from GeneWise GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG acacaaagacttggtcttgtaattagctttcctcctctgtttcctcccagGAGGTGGCCCACTACTCAACAATTAT---GTAACCTTGCTTGGTGACTACCTGCTTCAGACTAGAGACCCTCCAGTACTACCTAGTGTAGCCCAGCTAACCCAGAGGGCAGgtaagtgatggcctctacactctgtaacccagacactctggcaattccct #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCg cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCCTAA-CCATACACTTATCAATGTACAGATATGTggtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCCTAACCATACACTTATCAATGTACAGATATGTggtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCCTAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCCTAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCCTAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCCTAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCCTAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCCTAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAA-CACAGCCAATGTGAATGCag aagtttatctcttagcctcttagaaacactagctcctttcctggccacagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCACA-CCAATGTGAATGCaggtacccgacagtctcagtatccaaggtctagcatgtgttggggctgtttg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttatctcttagcctcttagaaacactagctcctttcctggccacagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCACACCAATGTGAATGCaggtacccgacagtctcagtatccaaggtctagcatgtgttggggctgtttg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcctcttagaaacactagctcctttcctggccacagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCACACCAATGTGAATGCAGgtacccgacagtctcagtatccaaggtctagcatgtgttggggctgtttg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcctcttagaaacactagctcctttcctggccacagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCACACCAATGTGAATGCAGgtacccgacagtctcagtatccaaggtctagcatgtgttggggctgtttg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcctcttagaaacactagctcctttcctggccacagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCACACCAATGTGAATGCAGgtacccgacagtctcagtatccaaggtctagcatgtgttggggctgtttg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcctcttagaaacactagctcctttcctggccacagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCACACCAATGTGAATGCAGgtacccgacagtctcagtatccaaggtctagcatgtgttggggctgtttg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcctcttagaaacactagctcctttcctggccacagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCACACCAATGTGAATGCAGgtacccgacagtctcagtatccaaggtctagcatgtgttggggctgtttg Alignment from GeneWise ------GTCCGAATGCAGATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcctcttagaaacactagCTCCTTTCCTGGCCACAGATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCACACCAATGTGAATGCAGgtacccgacagtctcagtatccaaggtctagcatgtgttggggctgtttg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGC-TGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttctggtttatcccccttatctcataagtgGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGTAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCCTGTA-TGGGTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgacaaatttgaatgcaagtacttggaagtatcagtctggtactt Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttctggtttatcccccttatctcataagtgGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGTAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCCTGTATGGGTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgacaaatttgaatgcaagtacttggaagtatcagtctggtactt Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttctggtttatcccccttatctcataagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGTAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCCTGTATGGGTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgacaaatttgaatgcaagtacttggaagtatcagtctggtactt Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttctggtttatcccccttatctcataagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGTAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCCTGTATGGGTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgacaaatttgaatgcaagtacttggaagtatcagtctggtactt Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTG---TGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttctggtttatcccccttatctcataagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGTAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCCTGTATGGGTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgacaaatttgaatgcaagtacttggaagtatcagtctggtactt Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttctggtttatcccccttatctcataagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGTAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCCTGTATGGGTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgacaaatttgaatgcaagtacttggaagtatcagtctggtactt Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttctggtttatcccccttatctcataagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGTAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCCTGTATGGGTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgacaaatttgaatgcaagtacttggaagtatcagtctggtactt Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttctggtttatcccccttatctcataagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTATGAAACTTATGGGTAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCCTGTATGGGTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgacaaatttgaatgcaagtacttggaagtatcagtctggtactt #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATG-CTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ccgttatgaaatcaatatactggttcttcctggggttgtcccggatctagacCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACACATGCCTCTCTA-TGTTGACCTTAATGGTCAAGATCGCAGGATTGTGCTCAAGTCCCTAAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtaagttatatgcaatatgtgcttatatcactaagtatagtaaaaagagc Alignment from CESAR acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ccgttatgaaatcaatatactggttcttcctggggttgtcccggatctagacCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACACATGCCTCTCTATGTTGACCTTAATGGTCAAGATCGCAGGATTGTGCTCAAGTCCCTAAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtaagttatatgcaatatgtgcttatatcactaagtatagtaaaaagagc Alignment from Spaln_aa2Genome CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ttatgaaatcaatatactggttcttcctggggttgtcccggatcta gACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACACATGCCTCTCTATGTTGACCTTAATGGTCAAGATCGCAGGATTGTGCTCAAGTCCCTAAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtaagttatatgcaatatgtgcttatatcactaagtatagtaaaaagagc Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ccgttatgaaatcaatatactggttcttcctggggttgtcccggatctagACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACACATGCCTCTCTATGTTGACCTTAATGGTCAAGATCGCAGGATTGTGCTCAAGTCCCTAAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtaagttatatgcaatatgtgcttatatcactaagtatagtaaaaagagc Alignment from Pairagon ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATG-CTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ccgttatgaaatcaatatactggttcttcctggggttgtcccggatctagACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACACATGCCTCTCTA-TGTTGACCTTAATGGTCAAGATCGCAGGATTGTGCTCAAGTCCCTAAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtaagttatatgcaatatgtgcttatatcactaagtatagtaaaaagagc Alignment from Exonerate_protein2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ccgttatgaaatcaatatactggttcttcctggggttgtcccggatctagACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACACATGCCTCTCTATGTTGACCTTAATGGTCAAGATCGCAGGATTGTGCTCAAGTCCCTAAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtaagttatatgcaatatgtgcttatatcactaagtatagtaaaaagagc Alignment from Exonerate_coding2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ccgttatgaaatcaatatactggttcttcctggggttgtcccggatctagACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACACATGCCTCTCTATGTTGACCTTAATGGTCAAGATCGCAGGATTGTGCTCAAGTCCCTAAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtaagttatatgcaatatgtgcttatatcactaagtatagtaaaaagagc Alignment from GeneWise TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ccgttatgaaatcaatatactggttcttcctggggttgtcccggatctagAC---CTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACACATGCCTCTCTATGTTGACCTTAATGGTCAAGATCGCAGGATTGTGCTCAAGTCCCTAAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtaagttatatgcaatatgtgcttatatcactaagtatagtaaaaagagc #### Vps13a_ID4053_70 --> 1 - 0 Original Alignment tGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAG-CTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagagtttgacttattcacaaagtccatctgctttcactctctttacagtGGGGTACTGTTTGTAACAAAGGGAGCATTCAGACAACCTTACATGTG-GTGGCAATATACGTAT---GAGTTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtcagagcacttagttctatatttcaattttcacatagatctagcacatg Alignment from CESAR tGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAG-CTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagagtttgacttattcacaaagtccatctgctttcactctctttacagtGGGGTACTGTTTGTAACAAAGGGAGCATTCAGACAACCTTACATGT-GGTGGCAATATACGTAT---GAGTTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtcagagcacttagttctatatttcaattttcacatagatctagcacatg Alignment from Spaln_aa2Genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagagtttgacttattcacaaagtccatctgctttcactctctttacagTGGGGTACTGTTTGTAACAAAGGGAGCATTCAGACAACCTTACATGTGGTGGCAATATACGTAT---GAGTTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtcagagcacttagttctatatttcaattttcacatagatctagcacatg Alignment from Spaln_nt2Genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGC-TTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagagtttgacttattcacaaagtccatctgctttcactctctttacagTGGGGTACTGTTTGTAACAAAGGGAGCATTCAGACAACCTTACATGTG-GTGGCAATATACGT---ATGAGTTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtcagagcacttagttctatatttcaattttcacatagatctagcacatg Alignment from Pairagon TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAG-CTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagagtttgacttattcacaaagtccatctgctttcactctctttacagTGGGGTACTGTTTGTAACAAAGGGAGCATTCAGACAACCTTACATGTG-GTGGCAATATACGT---ATGAGTTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtcagagcacttagttctatatttcaattttcacatagatctagcacatg Alignment from Exonerate_protein2genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagagtttgacttattcacaaagtccatctgctttcactctctttacagTGGGGTACTGTTTGTAACAAAGGGAGCATTCAGACAACCTTACATGTGGTGGCAATATACGTAT---GAGTTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtcagagcacttagttctatatttcaattttcacatagatctagcacatg Alignment from Exonerate_coding2genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagagtttgacttattcacaaagtccatctgctttcactctctttacagTGGGGTACTGTTTGTAACAAAGGGAGCATTCAGACAACCTTACATGTGGTGGCAATATACGTAT---GAGTTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtcagagcacttagttctatatttcaattttcacatagatctagcacatg Alignment from GeneWise TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagagtttgacttattcacaaagtccatctgctttcactctctttacagTGGGGTACTGTTTGTAACAAAGGGAGCATTCAGACAACCTTACATGTGGTGGCAATATACGTAT---GAGTTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtcagagcacttagttctatatttcaattttcacatagatctagcacatg #### Vps13a_ID4057_66 --> 0 - 1 Original Alignment GGTTTTGTAAGTGGCATTACAGGG-ATTGTTACAAAGCCAATTAAAg aaaaggtgtgctgttataattctataatcttccccttttcctcatgccagGGTTTTGTAAGTGGTATTACTGGCCATTGTTT-AGAACCAATAAAAggtaggaatcgccttgcctggtatatattttacatatatcattctcatttg Alignment from CESAR GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAg aaaaggtgtgctgttataattctataatcttccccttttcctcatgccagGGTTTTGTAAGTGGTATTACTGGCCATTGTTTAGAACCAATAAAAggtaggaatcgccttgcctggtatatattttacatatatcattctcatttg Alignment from Spaln_aa2Genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG aaaaggtgtgctgttataattctataatcttccccttttcctcatgccagGGTTTTGTAAGTGGTATTACTGGCCATTGTTTAGAACCAATAAAAGgtaggaatcgccttgcctggtatatattttacatatatcattctcatttg Alignment from Spaln_nt2Genome GGTTTTGTAAGTGGCATTACAGGG-ATTGTTACAAAGCCAATTAAAG aaaaggtgtgctgttataattctataatcttccccttttcctcatgccagGGTTTTGTAAGTGGTATTACTGGCCATTGTT-TAGAACCAATAAAAGgtaggaatcgccttgcctggtatatattttacatatatcattctcatttg Alignment from Pairagon GGTTTTGTAAGTGGCATTAC------------AGGGATTGTTACAAAGCCAATTAAAG aaaaggtgtgctgttataattctataatcttccccttttcctcatgccagGGTTTTGTAAGTGGTATTACTGGCCATTGTTTAG------------AACCAATAAAAGgtaggaatcgccttgcctggtatatattttacatatatcattctcatttg Alignment from Exonerate_protein2genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG aaaaggtgtgctgttataattctataatcttccccttttcctcatgccagGGTTTTGTAAGTGGTATTACTGGCCATTGTTTAGAACCAATAAAAGgtaggaatcgccttgcctggtatatattttacatatatcattctcatttg Alignment from Exonerate_coding2genome aaaaggtgtgctgttataattctataatcttccccttttcctcatgccagggttttgtaagtggtattactggccattgtttagaaccaataaaaggtaggaatcgccttgcctggtatatattttacatatatcattctcatttg Alignment from GeneWise GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAA--------------------------------------------------- aaaaggtgtgctgttataattctataatcttccccttttcctcatgccagGGTTTTGTAAGTGGTATTACTGGCCATTGTTTAGAACCAATAAAAGGTAGGAATCGCCTTGCCTGGTATATATTTTACATATATCATTCTCATTTG #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTg gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCAGGAATGGCATTAGGATTACAAAGCAC-AATTGGTGGAGCTGTTggtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCAGGAATGGCATTAGGATTACAAAGCACAATTGGTGGAGCTGTTggtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCAGGAATGGCATTAGGATTACAAAGCACAATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCAGGAATGGCATTAGGATTACAAAGCAC-AATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCAGGAATGGCATTAGGATTACAAAGCAC-AATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCAGGAATGGCATTAGGATTACAAAGCACAATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Exonerate_coding2genome gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagggggctatccaaggtcctgaagaatttgtggcaggaatggcattaggattacaaagcacaattggtggagctgttggtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCAGGAATGGCATTAGGATTACAAAGCACAATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGG-AAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcaggtAGCCTTAAACTTAAAATCCCATGGCAAAAACC-TTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTagtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcaggtAGCCTTAAACTTAAAATCCCATGGCAAAAACCTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTagtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGCAAAAACCTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGCAAAAACCTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGCAAAAACCTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGCAAAAACCTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGCAAAAACCTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from GeneWise GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGCAAAAACCTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg #### Vps37c_ID2983_3 --> 2 - 0 Original Alignment agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAG-ATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagagAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGCATTG-GGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from CESAR agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagagAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGCATTGGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Spaln_aa2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGCATTGGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Spaln_nt2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGCATTGGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Pairagon AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGCATTGGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Exonerate_protein2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGGCCAT ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGCATTGGGAGGAGTCAGAGGTGAGgtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Exonerate_coding2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGGCCAT ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGCATTGGGAGGAGTCAGAGGTGAGgtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from GeneWise AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGCATTGGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg #### Wdr74_ID2313_3 --> 0 - 2 Original Alignment ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACA-TTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATgg tctacattcttccctcaccctactcagcatctctgctcttgccttcacagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAA-CCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAAGTGGATgggtatgtgttactgatagtgtcgcctgagatatctaaagtgtggtgtactc Alignment from CESAR ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATgg tctacattcttccctcaccctactcagcatctctgctcttgccttcacagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAACCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAAGTGGATgggtatgtgttactgatagtgtcgcctgagatatctaaagtgtggtgtactc Alignment from Spaln_aa2Genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tctacattcttccctcaccctactcagcatctctgctcttgccttcacagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAACCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAAGTGGATGGgtatgtgttactgatagtgtcgcctgagatatctaaagtgtggtgtactc Alignment from Spaln_nt2Genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tctacattcttccctcaccctactcagcatctctgctcttgccttcacagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAACCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAAGTGGATGGgtatgtgttactgatagtgtcgcctgagatatctaaagtgtggtgtactc Alignment from Pairagon ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tctacattcttccctcaccctactcagcatctctgctcttgccttcacagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAACCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAAGTGGATGGgtatgtgttactgatagtgtcgcctgagatatctaaagtgtggtgtactc Alignment from Exonerate_protein2genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tctacattcttccctcaccctactcagcatctctgctcttgccttcacagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAACCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAAGTGGATGGgtatgtgttactgatagtgtcgcctgagatatctaaagtgtggtgtactc Alignment from Exonerate_coding2genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tctacattcttccctcaccctactcagcatctctgctcttgccttcacagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAACCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAAGTGGATGGgtatgtgttactgatagtgtcgcctgagatatctaaagtgtggtgtactc Alignment from GeneWise ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tctacattcttccctcaccctactcagcatctctgctcttgccttcacagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAACCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAAGTGGATGGgtatgtgttactgatagtgtcgcctgagatatctaaagtgtggtgtactc #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCA-AAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtaatctgccaaattctcctgctccgggcgttcaggcAGGCTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGCGTTCGTGGGCTGCACTGCCATCCTTCACAAGCCCCTAT-AGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTCTGGAGCATAAGgtaagttccagcaaatgtaacttagtagtcttagtagtagggctatgaca Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtaatctgccaaattctcctgctccgggcgttcaggcAGGCTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGCGTTCGTGGGCTGCACTGCCATCCTTCACAAGCCCCTATAGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTCTGGAGCATAAGgtaagttccagcaaatgtaacttagtagtcttagtagtagggctatgaca Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtaatctgccaaattctcctgctccgggcgttcagGCAGGCTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGCGTTCGTGGGCTGCACTGCCATCCTTCACAAGCCCCTATAGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTCTGGAGCATAAGgtaagttccagcaaatgtaacttagtagtcttagtagtagggctatgaca Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtaatctgccaaattctcctgctccgggcgttcagGCAGGCTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGCGTTCGTGGGCTGCACTGCCATCCTTCACAAGCCCCTATAGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTCTGGAGCATAAGgtaagttccagcaaatgtaacttagtagtcttagtagtagggctatgaca Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCA-AAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtaatctgccaaattctcctgctccgggcgttcagGCAGGCTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGCGTTCGTGGGCTGCACTGCCATCCTTCACAAGCCCCTA-TAGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTCTGGAGCATAAGgtaagttccagcaaatgtaacttagtagtcttagtagtagggctatgaca Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtaatctgccaaattctcctgctccgggcgttcagGCAGGCTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGCGTTCGTGGGCTGCACTGCCATCCTTCACAAGCCCCTATAGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTCTGGAGCATAAGgtaagttccagcaaatgtaacttagtagtcttagtagtagggctatgaca Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtaatctgccaaattctcctgctccgggcgttcagGCAGGCTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGCGTTCGTGGGCTGCACTGCCATCCTTCACAAGCCCCTATAGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTCTGGAGCATAAGgtaagttccagcaaatgtaacttagtagtcttagtagtagggctatgaca Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtaatctgccaaattctcctgctccgggcgttcagGCAGGCTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGCGTTCGTGGGCTGCACTGCCATCCTTCACAAGCCCCTATAGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTCTGGAGCATAAGgtaagttccagcaaatgtaacttagtagtcttagtagtagggctatgaca #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTG-GGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gaattatttcttttaacatcgttaatgttaactgtctgtccttcttgcagAATCATAAGAAGAATATTGAAAACAACTGCAAAAAGCTCCTTAGGAAGTTGCGGCA-GTACAGCAATCAGAAAGCTGTTGCTAACTACACCCTGAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtatggctgtctttccactacagtgtcttcattctaagagttgcagtgac Alignment from CESAR ACTCATAAGAAGAATGTAGAAAAC---TGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gaattatttcttttaacatcgttaatgttaactgtctgtccttcttgcagAATCATAAGAAGAATATTGAAAACAACTGCAAAAAGCTCCTTAGGAAGTTGCGGCAGTACAGCAATCAGAAAGCTGTTGCTAACTACACCCTGAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtatggctgtctttccactacagtgtcttcattctaagagttgcagtgac Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gaattatttcttttaacatcgttaatgttaactgtctgtccttcttgcagAATCATAAGAAGAATATTGAAAACAACTGCAAAAAGCTCCTTAGGAAGTTGCGGCAGTACAGCAATCAGAAAGCTGTTGCTAACTACACCCTGAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtatggctgtctttccactacagtgtcttcattctaagagttgcagtgac Alignment from Spaln_nt2Genome ACTCATAAGAA---GAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gaattatttcttttaacatcgttaatgttaactgtctgtccttcttgcagAATCATAAGAAGAATATTGAAAACAACTGCAAAAAGCTCCTTAGGAAGTTGCGGCAGTACAGCAATCAGAAAGCTGTTGCTAACTACACCCTGAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtatggctgtctttccactacagtgtcttcattctaagagttgcagtgac Alignment from Pairagon ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gaattatttcttttaacatcgttaatgttaactgtctgtccttcttgcagAATCATAAGAAGAATATTGAAAACAACTGCAAAAAGCTCCTTAGGAAGTTGCGGCAGTACAGCAATCAGAAAGCTGTTGCTAACTACACCCTGAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtatggctgtctttccactacagtgtcttcattctaagagttgcagtgac Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gaattatttcttttaacatcgttaatgttaactgtctgtccttcttgcagAATCATAAGAAGAATATTGAAAACAACTGCAAAAAGCTCCTTAGGAAGTTGCGGCAGTACAGCAATCAGAAAGCTGTTGCTAACTACACCCTGAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtatggctgtctttccactacagtgtcttcattctaagagttgcagtgac Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gaattatttcttttaacatcgttaatgttaactgtctgtccttcttgcagAATCATAAGAAGAATATTGAAAACAACTGCAAAAAGCTCCTTAGGAAGTTGCGGCAGTACAGCAATCAGAAAGCTGTTGCTAACTACACCCTGAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtatggctgtctttccactacagtgtcttcattctaagagttgcagtgac Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAAC---TGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gaattatttcttttaacatcgttaatgttaactgtctgtccttcttgcagAATCATAAGAAGAATATTGAAAACAACTGCAAAAAGCTCCTTAGGAAGTTGCGGCAGTACAGCAATCAGAAAGCTGTTGCTAACTACACCCTGAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtatggctgtctttccactacagtgtcttcattctaagagttgcagtgac #### Yif1a_ID833_5 --> 2 - 2 Original Alignment ccATGGCCTTCATCACATACGTGCTGCTGGCTGGA-ATGGCGCTAGGCATTCAGCAAag gtggggggatacactgggtagttgcatttgtggttttttttttttttcagccATGGCTTTTGTCACAGATGTGCTAAGGGCTGGGCATGGCAT-TGGCATTCAGCAGaggtgagtatccagcagatcttacttgttattcttgccaagcctggttttct Alignment from CESAR ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag gtggggggatacactgggtagttgcatttgtggttttttttttttttcagccATGGCTTTTGTCACAGATGTGCTAAGGGCTGGGCATGGCATTGGCATTCAGCAGaggtgagtatccagcagatcttacttgttattcttgccaagcctggttttct Alignment from Spaln_aa2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatacactgggtagttgcatttgtggttttttttttttttcagCCATGGCTTTTGTCACAGATGTGCTAAGGGCTGGGCATGGCATTGGCATTCAGCAGAGgtgagtatccagcagatcttacttgttattcttgccaagcctggttttct Alignment from Spaln_nt2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGA-ATGGCGCTAGGCATTCAGCAAAG gtggggggatacactgggtagttgcatttgtggttttttttttttttcagCCATGGCTTTTGTCACAGATGTGCTAAGGGCTGGGCATGGC-ATTGGCATTCAGCAGAGgtgagtatccagcagatcttacttgttattcttgccaagcctggttttct Alignment from Pairagon CCATGGCCTTCATCACATACGTGCTGCTGGCTGGA-ATGGCGCTAGGCATTCAGCAAAG gtggggggatacactgggtagttgcatttgtggttttttttttttttcagCCATGGCTTTTGTCACAGATGTGCTAAGGGCTGGGCATGGCATT-GGCATTCAGCAGAGgtgagtatccagcagatcttacttgttattcttgccaagcctggttttct Alignment from Exonerate_protein2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatacactgggtagttgcatttgtggttttttttttttttcagCCATGGCTTTTGTCACAGATGTGCTAAGGGCTGGGCATGGCATTGGCATTCAGCAGAGgtgagtatccagcagatcttacttgttattcttgccaagcctggttttct Alignment from Exonerate_coding2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatacactgggtagttgcatttgtggttttttttttttttcagCCATGGCTTTTGTCACAGATGTGCTAAGGGCTGGGCATGGCATTGGCATTCAGCAGAGgtgagtatccagcagatcttacttgttattcttgccaagcctggttttct Alignment from GeneWise CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtggggggatacactgggtagttgcatttgtggttttttttttttttcagCCATGGCTTTTGTCACAGATGTGCTAAGGGCTGGGCATGGCATTGGCATTCAGCAGAGgtgagtatccagcagatcttacttgttattcttgccaagcctggttttct #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAG-TGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ctcggatgggacaataacacatcttccagatgactttcattttctcctagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGAAACTGCATTTATC-CAAGCCAGCTTGCACACACCACTGTAGCATCTGTAAGaggtaagtctggttctgtccttcactttacttaaggcacattgagttttgag Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ctcggatgggacaataacacatcttccagatgactttcattttctcctagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGAAACTGCATTTATCCAAGCCAGCTTGCACACACCACTGTAGCATCTGTAAGaggtaagtctggttctgtccttcactttacttaaggcacattgagttttgag Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ctcggatgggacaataacacatcttccagatgactttcattttctcctagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGAAACTGCATTTATCCAAGCCAGCTTGCACACACCACTGTAGCATCTGTAAGAGgtaagtctggttctgtccttcactttacttaaggcacattgagttttgag Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAG-TGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ctcggatgggacaataacacatcttccagatgactttcattttctcctagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGAAACTGCATTTAT-CCAAGCCAGCTTGCACACACCACTGTAGCATCTGTAAGAGgtaagtctggttctgtccttcactttacttaaggcacattgagttttgag Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAG-TGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ctcggatgggacaataacacatcttccagatgactttcattttctcctagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGAAACTGCATTTAT-CCAAGCCAGCTTGCACACACCACTGTAGCATCTGTAAGAGgtaagtctggttctgtccttcactttacttaaggcacattgagttttgag Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ctcggatgggacaataacacatcttccagatgactttcattttctcctagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGAAACTGCATTTATCCAAGCCAGCTTGCACACACCACTGTAGCATCTGTAAGAGgtaagtctggttctgtccttcactttacttaaggcacattgagttttgag Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ctcggatgggacaataacacatcttccagatgactttcattttctcctagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGAAACTGCATTTATCCAAGCCAGCTTGCACACACCACTGTAGCATCTGTAAGAGgtaagtctggttctgtccttcactttacttaaggcacattgagttttgag Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ctcggatgggacaataacacatcttccagatgactttcattttctcctagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGAAACTGCATTTATCCAAGCCAGCTTGCACACACCACTGTAGCATCTGTAAGAGgtaagtctggttctgtccttcactttacttaaggcacattgagttttgag #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTA-CAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagggACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACCAGAAACCAG-TGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagggACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACCAGAAACCAGTGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACCAGAAACCAGTGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTAC-AGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACCAGAAACCAG-TGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGA------TGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCAC------CAGAAACCAGTGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACCAGAAACCAGTGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACCAGAAACCAGTGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACCAGAAACCAGTGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTG-CCCAGGTCCTCTATGGGAGCCACAg atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCTCATTCAAGGTACCCCCGCT-CTCCATGGGCGCCACAggtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCTCATTCAAGGTACCCCCGCTCTCCATGGGCGCCACAggtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCTCATTCAAGGTACCCCCGCTCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCTCATTCAAGGTACCCCCGCTCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCTCATTCAAGGTACCCCCGCTCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCTCATTCAAGGTACCCCCGCTCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCTCATTCAAGGTACCCCCGCTCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCTCATTCAAGGTACCCCCGCTCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac #### Zp1_ID3062_10 --> 0 - 1 Original Alignment GTCTATTTCTTCTGTAGTGCC-TCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCCTCTGCCT-TCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAagtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from CESAR GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCCTCTGCCTTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAagtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Spaln_aa2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCCTCTGCCTTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Spaln_nt2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCCTCTGCCTTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Pairagon GTCTATTTCTTCTGTAGTG-CCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCCTCTGCCT-TCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Exonerate_protein2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCCTCTGCCTTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Exonerate_coding2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCCTCTGCCTTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from GeneWise GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCCTCTGCCTTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt #### Zp1_ID3063_9 --> 1 - 0 Original Alignment gTGTCCTTTCAAGGGTGACAACTAC-AGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagtggttggtccttgaaggggctgcccacatttctcctctcacagaTGTCCTTTCAAGGGTGTTAATTATCAGAACAC-AGTAGTGGCTGCTGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgggaaactacctacctatgtcccatttaagatcaccattgatagatct Alignment from CESAR gTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagtggttggtccttgaaggggctgcccacatttctcctctcacagaTGTCCTTTCAAGGGTGTTAATTATCAGAACACAGTAGTGGCTGCTGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgggaaactacctacctatgtcccatttaagatcaccattgatagatct Alignment from Spaln_aa2Genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagtggttggtccttgaaggggctgcccacatttctcctctcacagATGTCCTTTCAAGGGTGTTAATTATCAGAACACAGTAGTGGCTGCTGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgggaaactacctacctatgtcccatttaagatcaccattgatagatct Alignment from Spaln_nt2Genome GTGTCCTTTCAAGGGTGACAACTA-CAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagtggttggtccttgaaggggctgcccacatttctcctctcacagATGTCCTTTCAAGGGTGTTAATTATCAGAACAC-AGTAGTGGCTGCTGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgggaaactacctacctatgtcccatttaagatcaccattgatagatct Alignment from Pairagon GTGTCCTTTCAAGGGTGACAACTA-CAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagtggttggtccttgaaggggctgcccacatttctcctctcacagATGTCCTTTCAAGGGTGTTAATTATCAGAACAC-AGTAGTGGCTGCTGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgggaaactacctacctatgtcccatttaagatcaccattgatagatct Alignment from Exonerate_protein2genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagtggttggtccttgaaggggctgcccacatttctcctctcacagATGTCCTTTCAAGGGTGTTAATTATCAGAACACAGTAGTGGCTGCTGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgggaaactacctacctatgtcccatttaagatcaccattgatagatct Alignment from Exonerate_coding2genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagtggttggtccttgaaggggctgcccacatttctcctctcacagATGTCCTTTCAAGGGTGTTAATTATCAGAACACAGTAGTGGCTGCTGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgggaaactacctacctatgtcccatttaagatcaccattgatagatct Alignment from GeneWise GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagtggttggtccttgaaggggctgcccacatttctcctctcacagATGTCCTTTCAAGGGTGTTAATTATCAGAACACAGTAGTGGCTGCTGACCGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgggaaactacctacctatgtcccatttaagatcaccattgatagatct ####