#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAG-ACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG tttggaagctagagtcagcctaacttgttaaattctacctcttcttgcagTCAGGCCTCAAATCAGAAATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGCACCT-GATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatacaacataccagatatgtaacccacaagacacaggtggtgattga Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG tttggaagctagagtcagcctaacttgttaaattctacctcttcttgcagTCAGGCCTCAAATCAGAAATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGCACCTGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatacaacataccagatatgtaacccacaagacacaggtggtgattga Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG tttggaagctagagtcagcctaacttgttaaattctacctcttcttgcagTCAGGCCTCAAATCAGAAATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGCACCTGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatacaacataccagatatgtaacccacaagacacaggtggtgattga Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG tttggaagctagagtcagcctaacttgttaaattctacctcttcttgcagTCAGGCCTCAAATCAGAAATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGCACCTGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatacaacataccagatatgtaacccacaagacacaggtggtgattga Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG tttggaagctagagtcagcctaacttgttaaattctacctcttcttgcagTCAGGCCTCAAATCAGAAATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGCACCTGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatacaacataccagatatgtaacccacaagacacaggtggtgattga Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG tttggaagctagagtcagcctaacttgttaaattctacctcttcttgcagTCAGGCCTCAAATCAGAAATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGCACCTGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatacaacataccagatatgtaacccacaagacacaggtggtgattga Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG tttggaagctagagtcagcctaacttgttaaattctacctcttcttgcagTCAGGCCTCAAATCAGAAATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGCACCTGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatacaacataccagatatgtaacccacaagacacaggtggtgattga Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG tttggaagctagagtcagcctaacttgttaaattctacctcttcttgcagTCAGGCCTCAAATCAGAAATGAGTGAGATCATCTTGTGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGCACCTGATGAAGGAGGAATCTTTGTCCACCAACTTGgtaatacaacataccagatatgtaacccacaagacacaggtggtgattga #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACA-GAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttaggaAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACACGAGA-GGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttaggaAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACACGAGAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACACGAGAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACACGAGAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACACGAGAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACACGAGAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACACGAGAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACACGAGAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga #### 1700123I01Rik_ID1492_4 --> 2 - 1 Original Alignment atAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTT-GTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCg ccggccaacaccttgagttctttctacactggatttctgttccactctagacAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTCGTTTTTA-TTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGcgtaagtagctgaggtgggttgtaaaaaaaataatgaagggcactcaggac Alignment from CESAR atAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCg ccggccaacaccttgagttctttctacactggatttctgttccactctagacAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTCGTTTTTATTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGcgtaagtagctgaggtgggttgtaaaaaaaataatgaagggcactcaggac Alignment from Spaln_aa2Genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG ccggccaacaccttgagttctttctacactggatttctgttccactctagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTCGTTTTTATTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtaagtagctgaggtgggttgtaaaaaaaataatgaagggcactcaggac Alignment from Spaln_nt2Genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG ccggccaacaccttgagttctttctacactggatttctgttccactctagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTCGTTTTTATTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtaagtagctgaggtgggttgtaaaaaaaataatgaagggcactcaggac Alignment from Pairagon ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG ccggccaacaccttgagttctttctacactggatttctgttccactctagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTCGTTTTTATTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtaagtagctgaggtgggttgtaaaaaaaataatgaagggcactcaggac Alignment from Exonerate_protein2genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG ccggccaacaccttgagttctttctacactggatttctgttccactctagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTCGTTTTTATTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtaagtagctgaggtgggttgtaaaaaaaataatgaagggcactcaggac Alignment from Exonerate_coding2genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG ccggccaacaccttgagttctttctacactggatttctgttccactctagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTCGTTTTTATTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtaagtagctgaggtgggttgtaaaaaaaataatgaagggcactcaggac Alignment from GeneWise ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG ccggccaacaccttgagttctttctacactggatttctgttccactctagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTCGTTTTTATTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtaagtagctgaggtgggttgtaaaaaaaataatgaagggcactcaggac #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAG-CAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg attataaatggctgagtgagcctttatcacaggcttctttccccgcacagg---TGCTCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTGCAGCCAGATCC-ACTTGCCCAGAAACAAGAAGCAGCTATGAAAggtaggtagagagtagcattggattttccccaactttcttgtagggctaat Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg attataaatggctgagtgagcctttatcacaggcttctttccccgcacaggTGC---TCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTGCAGCCAGATCCACTTGCCCAGAAACAAGAAGCAGCTATGAAAggtaggtagagagtagcattggattttccccaactttcttgtagggctctg Alignment from Spaln_aa2Genome CAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataaatggctgagtgagcctttatcacaggcttctttccccgcacagGTGCTCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTGCAGCCAGATCCACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtaggtagagagtagcattggattttccccaactttcttgtagggctaat Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataaatggctgagtgagcctttatcacaggcttctttccccgcacagGT---GCTCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTGCAGCCAGATCCACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtaggtagagagtagcattggattttccccaactttcttgtagggctaat Alignment from Pairagon GTGCT--CGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAG-CAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataaatggctgagtgagcctttatcacaggcttctttccccgcacagGTGCTCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTGCAGCCAGATCC-ACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtaggtagagagtagcattggattttccccaactttcttgtagggctaat Alignment from Exonerate_protein2genome CAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataaatggctgagtgagcctttatcacaggcttctttccccgcacagGTGCTCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTGCAGCCAGATCCACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtaggtagagagtagcattggattttccccaactttcttgtagggctaat Alignment from Exonerate_coding2genome CAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataaatggctgagtgagcctttatcacaggcttctttccccgcacagGTGCTCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTGCAGCCAGATCCACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtaggtagagagtagcattggattttccccaactttcttgtagggctaat Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataaatggctgagtgagcctttatcacaggcttctttccccgcacagGTGCTCC---CGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTGCAGCCAGATCCACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtaggtagagagtagcattggattttccccaactttcttgtagggctaat #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aacatgttgttgtgcattgtgaaagtggcagtcccattttttccccttagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAAT-TGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtacctagtttaactgacttatgctttatgtgtaatccctcattcaaaat Alignment from CESAR GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aacatgttgttgtgcattgtgaaagtggcagtcccattttttccccttagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtacctagtttaactgacttatgctttatgtgtaatccctcattcaaaat Alignment from Spaln_aa2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aacatgttgttgtgcattgtgaaagtggcagtcccattttttccccttagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtacctagtttaactgacttatgctttatgtgtaatccctcattcaaaat Alignment from Spaln_nt2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aacatgttgttgtgcattgtgaaagtggcagtcccattttttccccttagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtacctagtttaactgacttatgctttatgtgtaatccctcattcaaaat Alignment from Pairagon GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aacatgttgttgtgcattgtgaaagtggcagtcccattttttccccttagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAAT-TGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtacctagtttaactgacttatgctttatgtgtaatccctcattcaaaat Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aacatgttgttgtgcattgtgaaagtggcagtcccattttttccccttagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtacctagtttaactgacttatgctttatgtgtaatccctcattcaaaat Alignment from Exonerate_coding2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aacatgttgttgtgcattgtgaaagtggcagtcccattttttccccttagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtacctagtttaactgacttatgctttatgtgtaatccctcattcaaaat Alignment from GeneWise GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aacatgttgttgtgcattgtgaaagtggcagtcccattttttccccttagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATTGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtacctagtttaactgacttatgctttatgtgtaatccctcattcaaaat #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAA-AAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg tgaactctgtcaagatgtttgttcaacactttcttctccctcttcagtagttACTCCAGTTATAGAGCAGGGGAACAAACAAGCCCC-TGGCCAAAGATGGAAAGAGTCCCTTGAGAATGAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAggtaagtgagcactaggggtaagaactgcaaaaatcactcaagacttaaaa Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg tgaactctgtcaagatgtttgttcaacactttcttctccctcttcagtagttACTCCAGTTATAGAGCAGGGGAACAAACAAGCCCCTGGCCAAAGATGGAAAGAGTCCCTTGAGAATGAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAggtaagtgagcactaggggtaagaactgcaaaaatcactcaagacttaaaa Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG tgaactctgtcaagatgtttgttcaacactttcttctccctcttcagtagTTACTCCAGTTATAGAGCAGGGGAACAAACAAGCCCCTGGCCAAAGATGGAAAGAGTCCCTTGAGAATGAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaagtgagcactaggggtaagaactgcaaaaatcactcaagacttaaaa Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG tgaactctgtcaagatgtttgttcaacactttcttctccctcttcagtagTTACTCCAGTTATAGAGCAGGGGAACAAACAAGCCCCTGGCCAAAGATGGAAAGAGTCCCTTGAGAATGAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaagtgagcactaggggtaagaactgcaaaaatcactcaagacttaaaa Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG tgaactctgtcaagatgtttgttcaacactttcttctccctcttcagtagTTACTCCAGTTATAGAGCAGGGGAACAAACAAGCCCCTGGCCAAAGATGGAAAGAGTCCCTTGAGAATGAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaagtgagcactaggggtaagaactgcaaaaatcactcaagacttaaaa Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG tgaactctgtcaagatgtttgttcaacactttcttctccctcttcagtagTTACTCCAGTTATAGAGCAGGGGAACAAACAAGCCCCTGGCCAAAGATGGAAAGAGTCCCTTGAGAATGAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaagtgagcactaggggtaagaactgcaaaaatcactcaagacttaaaa Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG tgaactctgtcaagatgtttgttcaacactttcttctccctcttcagtagTTACTCCAGTTATAGAGCAGGGGAACAAACAAGCCCCTGGCCAAAGATGGAAAGAGTCCCTTGAGAATGAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaagtgagcactaggggtaagaactgcaaaaatcactcaagacttaaaa Alignment from GeneWise --GTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG tgaactctgtcaagatgtttgttcaacactttcttctccctcttcagTAGTTACTCCAGTTATAGAGCAGGGGAACAAACAAGCCCCTGGCCAAAGATGGAAAGAGTCCCTTGAGAATGAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaagtgagcactaggggtaagaactgcaaaaatcactcaagacttaaaa #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCC-AACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gtgggagtagcaagtgctaaggactatctttaatttctgatgttttccagaaTCTGGCCAGGATGGTCAGTCAGATCCCATCTCCCAACCCAG-TCCAGTGAGGATGCCAGCCGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAACTGCCAagtgagtcatcaagtattcttgggtttggtgggacatcatatagtagggca Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gtgggagtagcaagtgctaaggactatctttaatttctgatgttttccagaaTCTGGCCAGGATGGTCAGTCAGATCCCATCTCCCAACCCAGTCCAGTGAGGATGCCAGCCGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAACTGCCAagtgagtcatcaagtattcttgggtttggtgggacatcatatagtagggca Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggagtagcaagtgctaaggactatctttaatttctgatgttttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCCAACCCAGTCCAGTGAGGATGCCAGCCGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAACTGCCAAgtgagtcatcaagtattcttgggtttggtgggacatcatatagtagggca Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggagtagcaagtgctaaggactatctttaatttctgatgttttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCCAACCCAGTCCAGTGAGGATGCCAGCCGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACAAGGCTACGGCCTAGAGGACTCCGACC---TGAACTGCCAAgtgagtcatcaagtattcttgggtttggtgggacatcatatagtagggca Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggagtagcaagtgctaaggactatctttaatttctgatgttttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCCAACCCAGTCCAGTGAGGATGCCAGCCGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACAAGGCTACGGCCTAGAGGACTCCGACC---TGAACTGCCAAgtgagtcatcaagtattcttgggtttggtgggacatcatatagtagggca Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggagtagcaagtgctaaggactatctttaatttctgatgttttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCCAACCCAGTCCAGTGAGGATGCCAGCCGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAACTGCCAAgtgagtcatcaagtattcttgggtttggtgggacatcatatagtagggca Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggagtagcaagtgctaaggactatctttaatttctgatgttttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCCAACCCAGTCCAGTGAGGATGCCAGCCGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAACTGCCAAgtgagtcatcaagtattcttgggtttggtgggacatcatatagtagggca Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggagtagcaagtgctaaggactatctttaatttctgatgttttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCCAACCCAGTCCAGTGAGGATGCCAGCCGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAACTGCCAAgtgagtcatcaagtattcttgggtttggtgggacatcatatagtagggca #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATT-TTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgattgtggttgtaactatgggcctcctgtggattcctctccatgcagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGCTCTTGATTC-TTCAGCATTTTCAGAATCGAGTGACTCTACACATgtatccatgtaatgggtatttaaaaaagggtcattctagtgtcattcaaa Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgattgtggttgtaactatgggcctcctgtggattcctctccatgcagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGCTCTTGATTCTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtatccatgtaatgggtatttaaaaaagggtcattctagtgtcattcaaa Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgattgtggttgtaactatgggcctcctgtggattcctctccatgcagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGCTCTTGATTCTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtatccatgtaatgggtatttaaaaaagggtcattctagtgtcattcaaa Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATT-TTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgattgtggttgtaactatgggcctcctgtggattcctctccatgcagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGCTCTTGATTC-TTCAGCATTTTCAGAATCGAGTGACTCTACACATgtatccatgtaatgggtatttaaaaaagggtcattctagtgtcattcaaa Alignment from Pairagon GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTG-----------TCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgattgtggttgtaactatgggcctcctgtggattcctctccatgcagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGCTCTTGATTC-----------TTCAGCATTTTCAGAATCGAGTGACTCTACACATgtatccatgtaatgggtatttaaaaaagggtcattctagtgtcattcaaa Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgattgtggttgtaactatgggcctcctgtggattcctctccatgcagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGCTCTTGATTCTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtatccatgtaatgggtatttaaaaaagggtcattctagtgtcattcaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgattgtggttgtaactatgggcctcctgtggattcctctccatgcagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGCTCTTGATTCTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtatccatgtaatgggtatttaaaaaagggtcattctagtgtcattcaaa #### Abcc2_ID8838_22 --> 0 - 1 Original Alignment GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATC-GGGGTCTTTGGAGCTCTGGGAATAGCACAAg ggggtctgttctctcattttggacctacagcttactgtatttatgcccagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTATGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGTGCTTGGACAAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCCAGAGTAT-TGGTGCTCTGGGTATCGCACAAggtgccagtgccaagaccacaacccttaaagcgagttacatcttgttatat Alignment from CESAR GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg ggggtctgttctctcattttggacctacagcttactgtatttatgcccagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTATGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGTGCTTGGACAAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCCAGAGTATTGGTGCTCTGGGTATCGCACAAggtgccagtgccaagaccacaacccttaaagcgagttacatcttgttatat Alignment from Spaln_aa2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG ggggtctgttctctcattttggacctacagcttactgtatttatgcccagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTATGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGTGCTTGGACAAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCCAGAGTATTGGTGCTCTGGGTATCGCACAAGgtgccagtgccaagaccacaacccttaaagcgagttacatcttgttatat Alignment from Spaln_nt2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG ggggtctgttctctcattttggacctacagcttactgtatttatgcccagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTATGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGTGCTTGGACAAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCCAGAGTATTGGTGCTCTGGGTATCGCACAAGgtgccagtgccaagaccacaacccttaaagcgagttacatcttgttatat Alignment from Pairagon GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG ggggtctgttctctcattttggacctacagcttactgtatttatgcccagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTATGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGTGCTTGGACAAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCCAGAGTATTGGTGCTCTGGGTATCGCACAAGgtgccagtgccaagaccacaacccttaaagcgagttacatcttgttatat Alignment from Exonerate_protein2genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG ggggtctgttctctcattttggacctacagcttactgtatttatgcccagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTATGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGTGCTTGGACAAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCCAGAGTATTGGTGCTCTGGGTATCGCACAAGgtgccagtgccaagaccacaacccttaaagcgagttacatcttgttatat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG ggggtctgttctctcattttggacctacagcttactgtatttatgcccagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTATGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGTGCTTGGACAAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCCAGAGTATTGGTGCTCTGGGTATCGCACAAGgtgccagtgccaagaccacaacccttaaagcgagttacatcttgttatat #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatttcttctttcctccatcctcaggcCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAAGATGTAGCGGAGATGAACTACCTTTTCAG-AAACAATAAAGGTGAGgtaaccgagattgatacagcacctacttaggacagatgggagaactgtct Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatttcttctttcctccatcctcaggcCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAAGATGTAGCGGAGATGAACTACCTTTTCAGAAACAATAAAGGTGAGgtaaccgagattgatacagcacctacttaggacagatgggagaactgtct Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatttcttctttcctccatcctcagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAAGATGTAGCGGAGATGAACTACCTTTTCAGAAACAATAAAGGTGAGgtaaccgagattgatacagcacctacttaggacagatgggagaactgtct Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatttcttctttcctccatcctcagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAAGATGTAGCGGAGATGAACTACCTTTTCAG-AAACAATAAAGGTGAGgtaaccgagattgatacagcacctacttaggacagatgggagaactgtct Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatttcttctttcctccatcctcagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAAGATGTAGCGGAGATGAACTACCTTTTCAGAAACAATAAAGGTGAGgtaaccgagattgatacagcacctacttaggacagatgggagaactgtct Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatttcttctttcctccatcctcagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAAGATGTAGCGGAGATGAACTACCTTTTCAGAAACAATAAAGGTGAGgtaaccgagattgatacagcacctacttaggacagatgggagaactgtct Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatttcttctttcctccatcctcagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAAGATGTAGCGGAGATGAACTACCTTTTCAGAAACAATAAAGGTGAGgtaaccgagattgatacagcacctacttaggacagatgggagaactgtct Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatttcttctttcctccatcctcagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAAGATGTAGCGGAGATGAACTACCTTTTCAGAAACAATAAAGGTGAGgtaaccgagattgatacagcacctacttaggacagatgggagaactgtct #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATT-TTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctgcaagccttgggtatcctacctttgcttcctgtgaagTTCGTAAAAGAGGCCATTCCTGGAGGACT-GCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtgagcatgtggtatgttttttatagttgatgcagtaagtcaatttacag Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctgcaagccttgggtatcctacctttgcttcctgtgaagTTCGTAAAAGAGGCCATTCCTGGAGGACTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtgagcatgtggtatgttttttatagttgatgcagtaagtcaatttacag Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctgcaagccttgggtatcctacctttgcttcctgtgaagTTCGTAAAAGAGGCCATTCCTGGAGGACTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtgagcatgtggtatgttttttatagttgatgcagtaagtcaatttacag Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctgcaagccttgggtatcctacctttgcttcctgtgaagTTCGTAAAAGAGGCCATTCCTGGAGGACTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtgagcatgtggtatgttttttatagttgatgcagtaagtcaatttacag Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctgcaagccttgggtatcctacctttgcttcctgtgaagTTCGTAAAAGAGGCCATTCCTGGAGGACTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtgagcatgtggtatgttttttatagttgatgcagtaagtcaatttacag Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctgcaagccttgggtatcctacctttgcttcctgtgaagTTCGTAAAAGAGGCCATTCCTGGAGGACTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtgagcatgtggtatgttttttatagttgatgcagtaagtcaatttacag Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctgcaagccttgggtatcctacctttgcttcctgtgaagTTCGTAAAAGAGGCCATTCCTGGAGGACTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtgagcatgtggtatgttttttatagttgatgcagtaagtcaatttacag Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcctttaagctgcaagccttgggtatcctacctttgcttcctgtgaagTTCGTAAAAGAGGCCATTCCTGGAGGACTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtgagcatgtggtatgttttttatagttgatgcagtaagtcaatttacag #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCA-GCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaaggaacaccttactgtagatttttttgttttttaattttagGTTAGAAAAAAGCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTCACACGCTCCGG-TAATGCTATAAGCCCCTGGATCCAGGCAAAGGTCAAGgtaagtgttgggagactgtgctcatggagatcagtccagagcaaaatggt Alignment from CESAR GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaaggaacaccttactgtagatttttttgttttttaattttagGTTAGAAAAAAGCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTCACACGCTCCGGTAATGCTATAAGCCCCTGGATCCAGGCAAAGGTCAAGgtaagtgttgggagactgtgctcatggagatcagtccagagcaaaatggt Alignment from Spaln_aa2Genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaaggaacaccttactgtagatttttttgttttttaattttagGTTAGAAAAAAGCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTCACACGCTCCGGTAATGCTATAAGCCCCTGGATCCAGGCAAAGGTCAAGgtaagtgttgggagactgtgctcatggagatcagtccagagcaaaatggt Alignment from Spaln_nt2Genome GTCAGAAA---GCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaaggaacaccttactgtagatttttttgttttttaattttagGTTAGAAAAAAGCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCT---CCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTCACACGCTCCGGTAATGCTATAAGCCCCTGGATCCAGGCAAAGGTCAAGgtaagtgttgggagactgtgctcatggagatcagtccagagcaaaatggt Alignment from Pairagon GTCAGAAA-------------GCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAG--------------------GCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaaggaacaccttactgtagatttttttgttttttaattttagGTTAGAAAAAAGCTTGCCCCTGCT----------CATGAGCAGACATTCCAAGAGAAGCT---CCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTCACACGCTCCGG--------------------TAATGCTATAAGCCCCTGGATCCAGGCAAAGGTCAAGgtaagtgttgggagactgtgctcatggagatcagtccagagcaaaatggt Alignment from Exonerate_protein2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaaggaacaccttactgtagatttttttgttttttaattttagGTTAGAAAAAAGCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTCACACGCTCCGGTAATGCTATAAGCCCCTGGATCCAGGCAAAGGTCAAGgtaagtgttgggagactgtgctcatggagatcagtccagagcaaaatggt Alignment from Exonerate_coding2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaaggaacaccttactgtagatttttttgttttttaattttagGTTAGAAAAAAGCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTCACACGCTCCGGTAATGCTATAAGCCCCTGGATCCAGGCAAAGGTCAAGgtaagtgttgggagactgtgctcatggagatcagtccagagcaaaatggt Alignment from GeneWise GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaaggaacaccttactgtagatttttttgttttttaattttagGTTAGAAAAAAGCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTCACACGCTCCGGTAATGCTATAAGCCCCTGGATCCAGGCAAAGGTCAAGgtaagtgttgggagactgtgctcatggagatcagtccagagcaaaatggt #### Actn3_ID701_9 --> 0 - 0 Original Alignment GCAGAGACTGCTGCCAACAGGATC-TGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCT-GCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from CESAR GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Spaln_aa2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Spaln_nt2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Pairagon GCAGAGACTGCTGCCAACAGGAT-CTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTC-TGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Exonerate_protein2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Exonerate_coding2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from GeneWise GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt #### Actn3_ID702_8 --> 2 - 0 Original Alignment atATCGTGAACACCCCCAAACCAGATGAGAAA-GCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG gtttatagtgcccatggaatcctccatttaccttttctctgttttcacagatATTGTCAACACACCCAGACCAGATGAGAAACGCCATCA-AACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaaggcacactgttgtagacatgacatcatacagtatgttctggcagtt Alignment from CESAR atATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG gtttatagtgcccatggaatcctccatttaccttttctctgttttcacagatATTGTCAACACACCCAGACCAGATGAGAAACGCCATCAAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaaggcacactgttgtagacatgacatcatacagtatgttctggcagtt Alignment from Spaln_aa2Genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG gtttatagtgcccatggaatcctccatttaccttttctctgttttcacagATATTGTCAACACACCCAGACCAGATGAGAAACGCCATCAAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaaggcacactgttgtagacatgacatcatacagtatgttctggcagtt Alignment from Spaln_nt2Genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG gtttatagtgcccatggaatcctccatttaccttttctctgttttcacagATATTGTCAACACACCCAGACCAGATGAGAAACGCCATCAAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaaggcacactgttgtagacatgacatcatacagtatgttctggcagtt Alignment from Pairagon ATATCGTGAACACCCCCAAACCAGATGAGAAA-GCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG gtttatagtgcccatggaatcctccatttaccttttctctgttttcacagATATTGTCAACACACCCAGACCAGATGAGAAACGCCATCA-AACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaaggcacactgttgtagacatgacatcatacagtatgttctggcagtt Alignment from Exonerate_protein2genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG gtttatagtgcccatggaatcctccatttaccttttctctgttttcacagATATTGTCAACACACCCAGACCAGATGAGAAACGCCATCAAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaaggcacactgttgtagacatgacatcatacagtatgttctggcagtt Alignment from Exonerate_coding2genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG gtttatagtgcccatggaatcctccatttaccttttctctgttttcacagATATTGTCAACACACCCAGACCAGATGAGAAACGCCATCAAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaaggcacactgttgtagacatgacatcatacagtatgttctggcagtt Alignment from GeneWise ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG gtttatagtgcccatggaatcctccatttaccttttctctgttttcacagATATTGTCAACACACCCAGACCAGATGAGAAACGCCATCAAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaaggcacactgttgtagacatgacatcatacagtatgttctggcagtt #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAA-GGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag atgccagatgcctagttgagccagatcaaacctggtaaaattttttatagagGCTGCCTCCAAACAGCGGCTTGT-CCTCTGGTGCCAGCGGAAAATAGCTCCATACCGTAATGTTAATGTACAGAACTTCCATACTaggtgagtatcctgcgtattgtagttgggatctgttaaagtgaaggatgcca Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag atgccagatgcctagttgagccagatcaaacctggtaaaattttttatagagGCTGCCTCCAAACAGCGGCTTGTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGTAATGTTAATGTACAGAACTTCCATACTaggtgagtatcctgcgtattgtagttgggatctgttaaagtgaaggatgcca Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgcctagttgagccagatcaaacctggtaaaattttttatagAGGCTGCCTCCAAACAGCGGCTTGTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGTAATGTTAATGTACAGAACTTCCATACTAGgtgagtatcctgcgtattgtagttgggatctgttaaagtgaaggatgcca Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAA-GGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgcctagttgagccagatcaaacctggtaaaattttttatagAGGCTGCCTCCAAACAGCGGCTTG-TCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGTAATGTTAATGTACAGAACTTCCATACTAGgtgagtatcctgcgtattgtagttgggatctgttaaagtgaaggatgcca Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgcctagttgagccagatcaaacctggtaaaattttttatagaggctgcctccaaacag----------------CGGCTTG-TCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGTAATGTTAATGTACAGAACTTCCATACTAGgtgagtatcctgcgtattgtagttgggatctgttaaagtgaaggatgcca Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgcctagttgagccagatcaaacctggtaaaattttttatagAGGCTGCCTCCAAACAGCGGCTTGTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGTAATGTTAATGTACAGAACTTCCATACTAGgtgagtatcctgcgtattgtagttgggatctgttaaagtgaaggatgcca Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgcctagttgagccagatcaaacctggtaaaattttttatagAGGCTGCCTCCAAACAGCGGCTTGTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGTAATGTTAATGTACAGAACTTCCATACTAGgtgagtatcctgcgtattgtagttgggatctgttaaagtgaaggatgcca Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgcctagttgagccagatcaaacctggtaaaattttttatagAGGCTGCCTCCAAACAGCGGCTTGTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGTAATGTTAATGTACAGAACTTCCATACTAGgtgagtatcctgcgtattgtagttgggatctgttaaagtgaaggatgcca #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATT-CAGGACATCTCTGTAGAAg tggtagtgcgggggaacaaaggctctcatgttcattttttatctcaatagaaATAGTTGACGGCAACCTGAAGATGACCCTTGGCATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGG-CATCTCTGTAGAAggtgaggtgatgccagatgcctagttgagccagatcaaaggctctccctgt Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg tggtagtgcgggggaacaaaggctctcatgttcattttttatctcaatagaaATAGTTGACGGCAACCTGAAGATGACCCTTGGCATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAggtgaggtgatgccagatgcctagttgagccagatcaaacctggtaaaatt Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG tggtagtgcgggggaacaaaggctctcatgttcattttttatctcaatagAAATAGTTGACGGCAACCTGAAGATGACCCTTGGCATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgaggtgatgccagatgcctagttgagccagatcaaaggctctccctgt Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG tggtagtgcgggggaacaaaggctctcatgttcattttttatctcaatagAAATAGTTGACGGCAACCTGAAGATGACCCTTGGCATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgaggtgatgccagatgcctagttgagccagatcaaaggctctccctgt Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG tggtagtgcgggggaacaaaggctctcatgttcattttttatctcaatagAAATAGTTGACGGCAACCTGAAGATGACCCTTGGCATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgaggtgatgccagatgcctagttgagccagatcaaaggctctccctgt Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG tggtagtgcgggggaacaaaggctctcatgttcattttttatctcaatagAAATAGTTGACGGCAACCTGAAGATGACCCTTGGCATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgaggtgatgccagatgcctagttgagccagatcaaaggctctccctgt Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG tggtagtgcgggggaacaaaggctctcatgttcattttttatctcaatagAAATAGTTGACGGCAACCTGAAGATGACCCTTGGCATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgaggtgatgccagatgcctagttgagccagatcaaaggctctccctgt Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG tggtagtgcgggggaacaaaggctctcatgttcattttttatctcaatagAAATAGTTGACGGCAACCTGAAGATGACCCTTGGCATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgaggtgatgccagatgcctagttgagccagatcaaaggctctccctgt #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG---------GCCGACCTGTTCTCCCGG-ATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ctggtagaagcaattttcaaggctagccttcctttctctgtttacaacaggcCTCGAGATGGGCCCACAGCCCCAAGGAGTTCTGTGGCCTGATCTATCTGATCTATTCTCACAGCTTAAGAGCTT-AGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAACCAAggtaagtcattcccagtatcttgtcaggcaggtcaagttgatgggagagtt Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG---------GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ctggtagaagcaattttcaaggctagccttcctttctctgtttacaacaggcCTCGAGATGGGCCCACAGCCCCAAGGAGTTCTGTGGCCTGATCTATCTGATCTATTCTCACAGCTTAAGAGCTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAACCAAggtaagtcattcccagtatcttgtcaggcaggtcaagttgatgggagagtt Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG---------GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagaagcaattttcaaggctagccttcctttctctgtttacaacagGCCTCGAGATGGGCCCACAGCCCCAAGGAGTTCTGTGGCCTGATCTATCTGATCTATTCTCACAGCTTAAGAGCTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAACCAAGgtaagtcattcccagtatcttgtcaggcaggtcaagttgatgggagagtt Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGT---------TCTCCCGGATGC-GAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagaagcaattttcaaggctagccttcctttctctgtttacaacagGCCTCGAGATGGGCCCACAGCCCCAAGGAGTTCTGTGGCCTGATCTATCTGATCTATTCTCACAGCTTAAGAGCT-TAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAACCAAGgtaagtcattcccagtatcttgtcaggcaggtcaagttgatgggagagtt Alignment from Pairagon GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTG--------------------------GTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagaagcaattttcaaggctagccttcctttctctgtttacaacagGCCTCGAGATGGGCCCACAGCCCCAAGGAGTTCTGTGGCCTGATCTA-----------------TCTGATCTATTCTCACAGCTTAAGAGCTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAACCAAGgtaagtcattcccagtatcttgtcaggcaggtcaagttgatgggagagtt Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTG---------CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagaagcaattttcaaggctagccttcctttctctgtttacaacagGCCTCGAGATGGGCCCACAGCCCCAAGGAGTTCTGTGGCCTGATCTATCTGATCTATTCTCACAGCTTAAGAGCTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAACCAAGgtaagtcattcccagtatcttgtcaggcaggtcaagttgatgggagagtt Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTG---------CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagaagcaattttcaaggctagccttcctttctctgtttacaacagGCCTCGAGATGGGCCCACAGCCCCAAGGAGTTCTGTGGCCTGATCTATCTGATCTATTCTCACAGCTTAAGAGCTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAACCAAGgtaagtcattcccagtatcttgtcaggcaggtcaagttgatgggagagtt Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTG---------CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAGGCATGGACTTACCC------G ctggtagaagcaattttcaaggctagccttcctttctctgtttacaacagGCCTCGAGATGGGCCCACAGCCCCAAGGAGTTCTGTGGCCTGATCTATCTGATCTATTCTCACAGCTTAAGAGCTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAACCAAGGTAAGTCATTCCCAGTATCTTgtcaggcaggtcaagttgatgggagagtt #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATG------GACTTA-CCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacaatagtgaggagtgcctctggattctgctttcaggtATGGACTCAGACTCACGCAGCAT-TGAGATGGATATCTACAGGAACTCGGGAAGTGTGGACTTCCCCTGCACTGCTGATGGTGACCTAGCCAGCATGGTGCACCCACAAATACAAgtgctggtactactggtaatcaggtgtcccaagcagcaatgtcacaactt Alignment from CESAR gcATGGAC------TTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacaatagtgaggagtgcctctggattctgctttcaggtATGGACTCAGACTCACGCAGCATTGAGATGGATATCTACAGGAACTCGGGAAGTGTGGACTTCCCCTGCACTGCTGATGGTGACCTAGCCAGCATGGTGCACCCACAAATACAAgtgctggtactactggtaatcaggtgtcccaagcagcaatgtcacaactt Alignment from Spaln_aa2Genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacaatagtgaggagtgcctctggattctgctttcagGTATGGACTCAGACTCACGCAGCATTGAGATGGATATCTACAGGAACTCGGGAAGTGTGGACTTCCCCTGCACTGCTGATGGTGACCTAGCCAGCATGGTGCACCCACAAATACAAgtgctggtactactggtaatcaggtgtcccaagcagcaatgtcacaactt Alignment from Spaln_nt2Genome GCATGGACTTA----CCCGC--CTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacaatagtgaggagtgcctctggattctgctttcagGTATGGACTCAGACTCACGCAGCATTGAGATGGATATCTACAGGAACTCGGGAAGTGTGGACTTCCCCTGCACTGCTGATGGTGACCTAGCCAGCATGGTGCACCCACAAATACAAgtgctggtactactggtaatcaggtgtcccaagcagcaatgtcacaactt Alignment from Pairagon GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacaatagtgaggagtgcctctggattctgctttcagGTATGGACTCAGACTCACGCAGCATTGAGATGGATATCTACAGGAACTCGGGAAGTGTGGACTTCCCCTGCACTGCTGATGGTGACCTAGCCAGCATGGTGCACCCACAAATACAAgtgctggtactactggtaatcaggtgtcccaagcagcaatgtcacaactt Alignment from Exonerate_protein2genome GCATGGACTTACCC------GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacaatagtgaggagtgcctctggattctgctttcagGTATGGACTCAGACTCACGCAGCATTGAGATGGATATCTACAGGAACTCGGGAAGTGTGGACTTCCCCTGCACTGCTGATGGTGACCTAGCCAGCATGGTGCACCCACAAATACAAgtgctggtactactggtaatcaggtgtcccaagcagcaatgtcacaactt Alignment from Exonerate_coding2genome GCATGGACTTACCC------GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacaatagtgaggagtgcctctggattctgctttcagGTATGGACTCAGACTCACGCAGCATTGAGATGGATATCTACAGGAACTCGGGAAGTGTGGACTTCCCCTGCACTGCTGATGGTGACCTAGCCAGCATGGTGCACCCACAAATACAAgtgctggtactactggtaatcaggtgtcccaagcagcaatgtcacaactt Alignment from GeneWise ----------------------------------------------------------------------GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG GAGAGTTATCTGGAACAATAGTGAGGAGTGCCTCTGGATTCTGCTTTCAGGTATGGACTCAGACTCACGCAGCATTGAGATGGATATCTACAGGAACTCGGGAAGTGTGGACTTCCCCTGCACTGCTGATGGTGACCTAGCCAGCATGGTGCACCCACAAATACAAgtgctggtactactggtaatcaggtgtcccaagcagcaatgtcacaactt #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAGGAACTGTAC-CGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttaattcctagatctgcctatagcatcaaaaaaattttttttattatagTTACTGGACAGTGACCAGGAGTTGTATCCGCATATTCC-TCTTAGCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACTGACCGTCTTGAGGCACAA------------AACAAACAATTAGGTCAGGGGGAAggtgagtacattccacccatcttcgactgcaggagcaaatgctagaaggca Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttaattcctagatctgcctatagcatcaaaaaaattttttttattatagTTACTGGACAGTGACCAGGAGTTGTATCCGCATATTCCTCTTAGCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACTGACCGTCTTGAGGCACAA------------AACAAACAATTAGGTCAGGGGGAAggtgagtacattccacccatcttcgactgcaggagcaaatgctagaaggca Alignment from Spaln_aa2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctagatctgcctatagcatcaaaaaaattttttttattatagTTACTGGACAGTGACCAGGAGTTGTATCCGCATATTCCTCTTAGCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACTGACCGTCTTGAG------------GCACAAAACAAACAATTAGGTCAGGGGGAAGgtgagtacattccacccatcttcgactgcaggagcaaatgctagaaggca Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTA-CCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctagatctgcctatagcatcaaaaaaattttttttattatagTTACTGGACAGTGACCAGGAGTTGTATCCGCATATT-CCTCTTAGCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCG---TTTTTACCAGCAATGCTGAAACTGACCGTCTTGAGGCAC------------AAAACAAACAATTAGGTCAGGGGGAAGgtgagtacattccacccatcttcgactgcaggagcaaatgctagaaggca Alignment from Pairagon TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctagatctgcctatagcatcaaaaaaattttttttattatagTTACTGGACAGTGACCAGGAGTTGTATCCGCATATTCCTCTTAGCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTT---TACCAGCAATGCTGAAACTGACCGTCTTGAGGCAC------------AAAACAAACAATTAGGTCAGGGGGAAGgtgagtacattccacccatcttcgactgcaggagcaaatgctagaaggca Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctagatctgcctatagcatcaaaaaaattttttttattatagTTACTGGACAGTGACCAGGAGTTGTATCCGCATATTCCTCTTAGCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACTGACCGTCTTGAG------------GCACAAAACAAACAATTAGGTCAGGGGGAAGgtgagtacattccacccatcttcgactgcaggagcaaatgctagaaggca Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctagatctgcctatagcatcaaaaaaattttttttattatagTTACTGGACAGTGACCAGGAGTTGTATCCGCATATTCCTCTTAGCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACTGACCGTCTTGAG------------GCACAAAACAAACAATTAGGTCAGGGGGAAGgtgagtacattccacccatcttcgactgcaggagcaaatgctagaaggca Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctagatctgcctatagcatcaaaaaaattttttttattatagTTACTGGACAGTGACCAGGAGTTGTATCCGCATATTCCTCTTAGCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACTGACCGTCTTGAGGCACAA------------AACAAACAATTAGGTCAGGGGGAAGgtgagtacattccacccatcttcgactgcaggagcaaatgctagaaggca #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment GTgt gGGCACACACGGGTACATGGCCCCCGAA-GTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtaagtacctacgcactcacttcatctggtcccttctttcactcaggGGCACACATGGGTACATAGCTCCCAAGCGTACTTC-AAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGCTGCATGCTCTTTAAATTGTTGCGAgggtgagtcgagtcaaccatgaggggggagcccttcacagctggctgtcaga Alignment from CESAR GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtaagaacctacgcactcacttcatctggtcccttctttcactcaggGGCACACATGGGTACATAGCTCCCAAGCGTACTTCAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGCTGCATGCTCTTTAAATTGTTGCGAgggtgagtcgagtcaaccatgaggggggagcccttcacagctggctgtcaga Alignment from Spaln_aa2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagtacctacgcactcacttcatctggtcccttctttcactcagGGGCACACATGGGTACATAGCTCCCAAGCGTACTTCAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtcgagtcaaccatgaggggggagcccttcacagctggctgtcaga Alignment from Spaln_nt2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAA-GTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagtacctacgcactcacttcatctggtcccttctttcactcagGGGCACACATGGGTACATAGCTCCCAAGCGTACTTCA-AAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtcgagtcaaccatgaggggggagcccttcacagctggctgtcaga Alignment from Pairagon GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCG--------------TGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagtacctacgcactcacttcatctggtcccttctttcactcagGGGCACACATGGGTACATAGCTCCCAA--------------GCGTACTTCAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtcgagtcaaccatgaggggggagcccttcacagctggctgtcaga Alignment from Exonerate_protein2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagtacctacgcactcacttcatctggtcccttctttcactcagGGGCACACATGGGTACATAGCTCCCAAGCGTACTTCAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtcgagtcaaccatgaggggggagcccttcacagctggctgtcaga Alignment from Exonerate_coding2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagtacctacgcactcacttcatctggtcccttctttcactcagGGGCACACATGGGTACATAGCTCCCAAGCGTACTTCAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtcgagtcaaccatgaggggggagcccttcacagctggctgtcaga Alignment from GeneWise GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagtacctacgcactcacttcatctggtcccttctttcactcagGGGCACACATGGGTACATAGCTCCCAAGCGTACTTCAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtcgagtcaaccatgaggggggagcccttcacagctggctgtcaga #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAG-GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gacctcatcgattgtgctgggttgcttacatttttgttttacttttttaggCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCAAGATGAAACAGCGGAGAGA-ACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtattccaagtggtcaggtggactcccacttagtttgccttctacaagtc Alignment from CESAR gTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gacctcatcgattgtgctgggttgcttacatttttgttttacttttttaggCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCAAGATGAAACAGCGGAGAGAACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtattccaagtggtcaggtggactcccacttagtttgccttctacaagtc Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gacctcatcgattgtgctgggttgcttacatttttgttttacttttttagGCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCAAGATGAAACAGCGGAGAGAACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtattccaagtggtcaggtggactcccacttagtttgccttctacaagtc Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGGA---CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gacctcatcgattgtgctgggttgcttacatttttgttttacttttttagGCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCAAGATGAAACAGCGGAGAGAACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtattccaagtggtcaggtggactcccacttagtttgccttctacaagtc Alignment from Pairagon GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAG-GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gacctcatcgattgtgctgggttgcttacatttttgttttacttttttagGCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCAAGATGAAACAGCGGAGAGA-ACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtattccaagtggtcaggtggactcccacttagtttgccttctacaagtc Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gacctcatcgattgtgctgggttgcttacatttttgttttacttttttagGCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCAAGATGAAACAGCGGAGAGAACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtattccaagtggtcaggtggactcccacttagtttgccttctacaagtc Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gacctcatcgattgtgctgggttgcttacatttttgttttacttttttagGCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCAAGATGAAACAGCGGAGAGAACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtattccaagtggtcaggtggactcccacttagtttgccttctacaagtc Alignment from GeneWise GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gacctcatcgattgtgctgggttgcttacatttttgttttacttttttagGCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCAAGATGAAACAGCGGAGAGAACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtattccaagtggtcaggtggactcccacttagtttgccttctacaagtc #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAG-GAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacacacagccagcctcatacagtgacgagcatttgtccttacttgcagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGCGAGTGTG-TGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTACTTGCATGCTCACATgtgattgctgaatccatccaatgctcctagacatgtgggcttaaagggac Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTG---GTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacacacagccagcctcatacagtgacgagcatttgtccttacttgcagATTAAAAAATATGCAAAGCTGGAGACAGAGGAG---CGAGTGTGTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTACTTGCATGCTCACATgtgattgctgaatccatccaatgctcctagacatgtgggcttaaagggac Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacacacagccagcctcatacagtgacgagcatttgtccttacttgcagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGCGAGTGTGTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTACTTGCATGCTCACATgtgattgctgaatccatccaatgctcctagacatgtgggcttaaagggac Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacacacagccagcctcatacagtgacgagcatttgtccttacttgcagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGCGAGTGTGTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTACTTGCATGCTCACATgtgattgctgaatccatccaatgctcctagacatgtgggcttaaagggac Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTG---GTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacacacagccagcctcatacagtgacgagcatttgtccttacttgcagATTAAAAAATATGCAAAGCTGGAGACAGAGGAG---CGAGTGTGTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTACTTGCATGCTCACATgtgattgctgaatccatccaatgctcctagacatgtgggcttaaagggac Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacacacagccagcctcatacagtgacgagcatttgtccttacttgcagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGCGAGTGTGTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTACTTGCATGCTCACATgtgattgctgaatccatccaatgctcctagacatgtgggcttaaagggac Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacacacagccagcctcatacagtgacgagcatttgtccttacttgcagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGCGAGTGTGTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTACTTGCATGCTCACATgtgattgctgaatccatccaatgctcctagacatgtgggcttaaagggac Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccacacacagccagcctcatacagtgacgagcatttgtccttacttgcagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGCGAGTGTGTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAGGAGCTACTTGCATGCTCACATgtgattgctgaatccatccaatgctcctagacatgtgggcttaaagggac #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCC-ACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCCACACCAC-GAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAggtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCCACACCACGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAggtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCCACACCACGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCC-ACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCCACACCACG-AGCACTATTGTTAAGTTGCA---TGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCC---CACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCCACACCACGAG---CACTATTGTTAAGTTGCA---TGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCCACACCACGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCCACACCACGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCCACACCACGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTC-ATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg atatttagagtccccctcaggaccacattgtcttgttttcttccaaacagGCTACAATGTTGGATGCCACATTCCATCAGGA-GGAACCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGATGCTTGTGCCACTGGTGGGTGCTGTAGCTGCAggtaagtaggttttaaccttttcgctgaggcttctgcctttgtcgtgtagt Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg atatttagagtccccctcaggaccacattgtcttgttttcttccaaacagGCTACAATGTTGGATGCCACATTCCATCAGGAGGAACCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGATGCTTGTGCCACTGGTGGGTGCTGTAGCTGCAggtaagtaggttttaaccttttcgctgaggcttctgcctttgtcgtgtagt Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atatttagagtccccctcaggaccacattgtcttgttttcttccaaacagGCTACAATGTTGGATGCCACATTCCATCAGGAGGAACCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGATGCTTGTGCCACTGGTGGGTGCTGTAGCTGCAGgtaagtaggttttaaccttttcgctgaggcttctgcctttgtcgtgtagt Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atatttagagtccccctcaggaccacattgtcttgttttcttccaaacagGCTACAATGTTGGATGCCACATTCCATCAGGAGGAACCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGATGCTTGTGCCACTGGTGGGTGCTGTAGCTGCAGgtaagtaggttttaaccttttcgctgaggcttctgcctttgtcgtgtagt Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atatttagagtccccctcaggaccacattgtcttgttttcttccaaacaggctacaatgttggatgccacattccatcagG------------------------------AGGAACCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGATGCTTGTGCCACTGGTGGGTGCTGTAGCTGCAGgtaagtaggttttaaccttttcgctgaggcttctgcctttgtcgtgtagt Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atatttagagtccccctcaggaccacattgtcttgttttcttccaaacagGCTACAATGTTGGATGCCACATTCCATCAGGAGGAACCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGATGCTTGTGCCACTGGTGGGTGCTGTAGCTGCAGgtaagtaggttttaaccttttcgctgaggcttctgcctttgtcgtgtagt Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atatttagagtccccctcaggaccacattgtcttgttttcttccaaacagGCTACAATGTTGGATGCCACATTCCATCAGGAGGAACCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGATGCTTGTGCCACTGGTGGGTGCTGTAGCTGCAGgtaagtaggttttaaccttttcgctgaggcttctgcctttgtcgtgtagt Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atatttagagtccccctcaggaccacattgtcttgttttcttccaaacagGCTACAATGTTGGATGCCACATTCCATCAGGAGGAACCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGATGCTTGTGCCACTGGTGGGTGCTGTAGCTGCAGgtaagtaggttttaaccttttcgctgaggcttctgcctttgtcgtgtagt #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTG---GTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ttaagagtctactgttcaatttaccacattttcatttccttttctgaaagCTGACAAAGCTTAGCTCCGCTTTCATCCGAAAAGAGCCCTTTGGTCTAGTTCTTCTAATTATTCGCAC-TTGGAACTATCCTGTAAACTTGATGATCATCCCTCAGGTGGGAGCCATTGCTGCAggtgagtgaaatattatggccacccatctagaagagtatgccctgagggta Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT---ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ttaagagtctactgttcaatttaccacattttcatttccttttctgaaagCTGACAAAGCTTAGCTCCGCTTTCATCCGAAAAGAGCCCTTTGGTCTAGTTCTTCTAATTATTCGCACTTGGAACTATCCTGTAAACTTGATGATCATCCCTCAGGTGGGAGCCATTGCTGCAggtgagtgaaatattatggccacccatctagaagagtatgccctgagggta Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTG---CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttaagagtctactgttcaatttaccacattttcatttccttttctgaaagCTGACAAAGCTTAGCTCCGCTTTCATCCGAAAAGAGCCCTTTGGTCTAGTTCTTCTAATTATTCGCACTTGGAACTATCCTGTAAACTTGATGATCATCCCTCAGGTGGGAGCCATTGCTGCAGgtgagtgaaatattatggccacccatctagaagagtatgccctgagggta Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCC---TGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttaagagtctactgttcaatttaccacattttcatttccttttctgaaagCTGACAAAGCTTAGCTCCGCTTTCATCCGAAAAGAGCCCTTTGGTCTAGTTCTTCTAATTATTCGCACTTGGAACTATCCTGTAAACTTGATGATCATCCCTCAGGTGGGAGCCATTGCTGCAGgtgagtgaaatattatggccacccatctagaagagtatgccctgagggta Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT----GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttaagagtctactgttcaatttaccacattttcatttccttttctgaaagCTGACAAAGCTTAGCTCCGCTTTCATCCGAAAAGAGCCCTTTGGTCTAGTTCTTCTAATTATTCGCA-CTTGGAACTATCCTGTAAACTTGATGATCATCCCTCAGGTGGGAGCCATTGCTGCAGgtgagtgaaatattatggccacccatctagaagagtatgccctgagggta Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTG---CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttaagagtctactgttcaatttaccacattttcatttccttttctgaaagCTGACAAAGCTTAGCTCCGCTTTCATCCGAAAAGAGCCCTTTGGTCTAGTTCTTCTAATTATTCGCACTTGGAACTATCCTGTAAACTTGATGATCATCCCTCAGGTGGGAGCCATTGCTGCAGgtgagtgaaatattatggccacccatctagaagagtatgccctgagggta Alignment from Exonerate_coding2genome ttaagagtctactgttcaatttaccacattttcatttccttttctgaaagctgacaaagcttagctccgctttcatccgaaaagagccctttggtctagttcttctaattattcgcacttggaactatcctgtaaacttgatgatcatccctcaggtgggagccattgctgcaggtgagtgaaatattatggccacccatctagaagagtatgccctgagggta Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT---ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttaagagtctactgttcaatttaccacattttcatttccttttctgaaagCTGACAAAGCTTAGCTCCGCTTTCATCCGAAAAGAGCCCTTTGGTCTAGTTCTTCTAATTATTCGCACTTGGAACTATCCTGTAAACTTGATGATCATCCCTCAGGTGGGAGCCATTGCTGCAGgtgagtgaaatattatggccacccatctagaagagtatgccctgagggta #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTG-AAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctaggaAATTGTGTGGTATTGCAGGCCAT-TGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagtttgagctgggcaccaactcccagAGCTGTT Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctaggaAATTGTGTGGTATTGCAGGCCATTGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagttctttttgtctctgcctctttagAGCTGTT Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGCAGGCCATTGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagtttgagctgggcaccaactcccagAGCTGTT Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGCAGGCCATTGATATTAGTAAGAACACGGAAA---TGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagtttgagctgggcaccaactcccagAGCTGTT Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGCAGGCCATTGATATTAGTAAGAACACGGAAA---TGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagtttgagctgggcaccaactcccagAGCTGTT Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGCAGGCCATTGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagtttgagctgggcaccaactcccagAGCTGTT Alignment from Exonerate_coding2genome GACCAGAGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctaggaaattgtgtggtattgcaggccattgatattagtaagaacacggaaatgcaggcagagctactgcggcatctcgatcaggtagggctgattgtgcaagtttgagctgggcaccaacTCCCAGAGCTGTT Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGCAGGCCATTGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagtttgagctgggcaccaactcccagAGCTGTT #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATG-CAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aagactaaatggcttactaggtgagtagtcttccctttcttgtcacccaggaAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAGATGCCAGGAAC-GTTGGTT------TTGCAAAATTCTATCACTCGTTTT------TACAATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGCATTggtaagtccttgctatgtctgctggcccatcagagggaccatgccatctgt Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aagactaaatggcttactaggtgagtagtcttccctttcttgtcacccaggaAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAGATGCCAGGAACGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGCATTggtaagtccttgctatgtctgctggcccatcagagggaccatgccatctgt Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aagactaaatggcttactaggtgagtagtcttccctttcttgtcacccagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAACCCCTGCTATGAT---GATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAGATGCCAGGAACGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagtccttgctatgtctgctggcccatcagagggaccatgccatctgt Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGC-AGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aagactaaatggcttactaggtgagtagtcttccctttcttgtcacccagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAGATGCCAGGAAC-GTTGGT------TTTGCAAAATTCTATCACTCGTTTTT------ACAATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagtccttgctatgtctgctggcccatcagagggaccatgccatctgt Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCC--------------TGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aagactaaatggcttactaggtgagtagtcttccctttcttgtcacccagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAGATG--------------------CCAGGAACGTTGGTTTTGCAAAATTCTATCACTCGTTTTT------ACAATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagtccttgctatgtctgctggcccatcagagggaccatgccatctgt Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aagactaaatggcttactaggtgagtagtcttccctttcttgtcacccagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAGATGCCAGGAACGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagtccttgctatgtctgctggcccatcagagggaccatgccatctgt Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aagactaaatggcttactaggtgagtagtcttccctttcttgtcacccagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAGATGCCAGGAACGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagtccttgctatgtctgctggcccatcagagggaccatgccatctgt Alignment from GeneWise TCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aagactaaatggcttactaggtgagtagtcttccctttcttgtcacccaggaagCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAGATGCCAGGAACGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagtccttgctatgtctgctggcccatcagagggaccatgccatctgt #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGAT-GAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctatggtcaatcctctgcatgtcgctcatgatctctttctcttgccagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGTTTGGATCGAAGCCA-TGTATCCAATAACCAATGGGAGAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaatgtggtggtgagacaataattagcctacaaacagtaaatcaaggtg Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctatggtcaatcctctgcatgtcgctcatgatctctttctcttgccagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGTTTGGATCGAAGCCATGTATCCAATAACCAATGGGAGAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaatgtggtggtgagacaataattagcctacaaacagtaaatcaaggtg Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctatggtcaatcctctgcatgtcgctcatgatctctttctcttgccagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGTTTGGATCGAAGCCATGTATCCAATAACCAATGGGAGAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaatgtggtggtgagacaataattagcctacaaacagtaaatcaaggtg Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGAT-GAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctatggtcaatcctctgcatgtcgctcatgatctctttctcttgccagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGTTTGGATCGAAGCCA-TGTATCCAATAACCAATGGGAGAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaatgtggtggtgagacaataattagcctacaaacagtaaatcaaggtg Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGAT-GAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctatggtcaatcctctgcatgtcgctcatgatctctttctcttgccagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGTTTGGATCGAAGCCA-TGTATCCAATAACCAATGGGAGAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaatgtggtggtgagacaataattagcctacaaacagtaaatcaaggtg Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctatggtcaatcctctgcatgtcgctcatgatctctttctcttgccagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGTTTGGATCGAAGCCATGTATCCAATAACCAATGGGAGAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaatgtggtggtgagacaataattagcctacaaacagtaaatcaaggtg Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctatggtcaatcctctgcatgtcgctcatgatctctttctcttgccagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGTTTGGATCGAAGCCATGTATCCAATAACCAATGGGAGAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaatgtggtggtgagacaataattagcctacaaacagtaaatcaaggtg Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctatggtcaatcctctgcatgtcgctcatgatctctttctcttgccagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGTTTGGATCGAAGCCATGTATCCAATAACCAATGGGAGAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaatgtggtggtgagacaataattagcctacaaacagtaaatcaaggtg #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG accggcctacttacacataaatgggtcttaatctttcaaatcgtttctaggaGGAAAGACTCCATTCCAATCCTTCTTGCGGTATGG-CCAGCAACATTCGCCCCACACATTGgtaagattgagtaagctacagaccgggaaggctgggcaagtggggttgag Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG accggcctacttacacataaatgggtcttaatctttcaaatcgtttctaggaGGAAAGACTCCATTCCAATCCTTCTTGCGGTATGGCCAGCAACATTCGCCCCACACATTGgtaagattgagtaagctacagaccgggaaggctgggcaagtggggttgag Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG accggcctacttacacataaatgggtcttaatctttcaaatcgtttctagGAGGAAAGACTCCATTCCAATCCTTCTTGCGGTATGGCCAGCAACATTCGCCCCACACATTGgtaagattgagtaagctacagaccgggaaggctgggcaagtggggttgag Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG accggcctacttacacataaatgggtcttaatctttcaaatcgtttctagGAGGAAAGACTCCATTCCAATCCTTCTTGCGGTATGG-CCAGCAACATTCGCCCCACACATTGgtaagattgagtaagctacagaccgggaaggctgggcaagtggggttgag Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG accggcctacttacacataaatgggtcttaatctttcaaatcgtttctagGAGGAAAGACTCCATTCCAATCCTTCTTGCGGTATGG-CCAGCAACATTCGCCCCACACATTGgtaagattgagtaagctacagaccgggaaggctgggcaagtggggttgag Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG accggcctacttacacataaatgggtcttaatctttcaaatcgtttctagGAGGAAAGACTCCATTCCAATCCTTCTTGCGGTATGGCCAGCAACATTCGCCCCACACATTGgtaagattgagtaagctacagaccgggaaggctgggcaagtggggttgag Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG accggcctacttacacataaatgggtcttaatctttcaaatcgtttctagGAGGAAAGACTCCATTCCAATCCTTCTTGCGGTATGGCCAGCAACATTCGCCCCACACATTGgtaagattgagtaagctacagaccgggaaggctgggcaagtggggttgag Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG accggcctacttacacataaatgggtcttaatctttcaaatcgtttctagGAGGAAAGACTCCATTCCAATCCTTCTTGCGGTATGGCCAGCAACATTCGCCCCACACATTGgtaagattgagtaagctacagaccgggaaggctgggcaagtggggttgag #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCG-GTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAG---GACAGA gatatgtatggtgattggcctccacccacttaagtatcggtgtaccccagTTGCTCAGCTCAACATTACATGTGGCACGTCAGGACTG-CCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAATAGAgtaagaatgagtgtaacctgacttgaattaagcctacagatgacaacatt Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gatatgtatggtgattggcctccacccacttaagtatcggtgtaccccagTTGCTCAGCTCAACATTACATGTGGCACGTCAGGACTGCCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAATAGAgtaagaatgagtgtaacctgacttgaattaagcctacagatgacaacatt Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gatatgtatggtgattggcctccacccacttaagtatcggtgtaccccagTTGCTCAGCTCAACATTACATGTGGCACGTCAGGACTGCCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAATAGAgtaagaatgagtgtaacctgacttgaattaagcctacagatgacaacatt Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCG-GTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACA---GA gatatgtatggtgattggcctccacccacttaagtatcggtgtaccccagTTGCTCAGCTCAACATTACATGTGGCACGTCAGGACT-GCCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAATAGAgtaagaatgagtgtaacctgacttgaattaagcctacagatgacaacatt Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCG-GTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gatatgtatggtgattggcctccacccacttaagtatcggtgtaccccagTTGCTCAGCTCAACATTACATGTGGCACGTCAGGACT-GCCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAATAGAgtaagaatgagtgtaacctgacttgaattaagcctacagatgacaacatt Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGAGAA gatatgtatggtgattggcctccacccacttaagtatcggtgtaccccagTTGCTCAGCTCAACATTACATGTGGCACGTCAGGACTGCCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAATAGAgtaagaatgagtgtaacctgacttgaattaagcctacagatgacaacatt Alignment from Exonerate_coding2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGAGAA gatatgtatggtgattggcctccacccacttaagtatcggtgtaccccagTTGCTCAGCTCAACATTACATGTGGCACGTCAGGACTGCCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAATAGAgtaagaatgagtgtaacctgacttgaattaagcctacagatgacaacatt Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGAGAA gatatgtatggtgattggcctccacccacttaagtatcggtgtaccccagTTGCTCAGCTCAACATTACATGTGGCACGTCAGGACTGCCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAATAGAgtaagaatgagtgtaacctgacttgaattaagcctacagatgacaacatt #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACATGATGCCGTG-AGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG tatggagtcctataaggccagaagttttgctttggctttctctgttacagGAAGGAGACAGTGCCCTACATGATGCTGTGCAAGATCAACT-CTACAAAAATATTAAACTGTTGCTCTTACATGGGACAGACATGATGGCAGCCAAGAACTTAgtatcattgctcttgccttggtggtttggatagccccgcaaggtgctgta Alignment from CESAR GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tatggagtcctataaggccagaagttttgctttggctttctctgttacagGAAGGAGACAGTGCCCTACATGATGCTGTGCAAGATCAACTCTACAAAAATATTAAACTGTTGCTCTTACATGGGACAGACATGATGGCAGCCAAGAACTTAgtatcattgctcttgccttggtggtttggatagccccgcaaggtgctgta Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tatggagtcctataaggccagaagttttgctttggctttctctgttacagGAAGGAGACAGTGCCCTACATGATGCTGTGCAAGATCAACTCTACAAAAATATTAAACTGTTGCTCTTACATGGGACAGACATGATGGCAGCCAAGAACTTAgtatcattgctcttgccttggtggtttggatagccccgcaaggtgctgta Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG tatggagtcctataaggccagaagttttgctttggctttctctgttacagGAAGGAGACAGTGCCCTACATGATGCTGTGCAAGATCAACTCTACAAAAATATTAAACTGTTGCTCTTACATGGGACAGACATGATGGCAGCCAAGAACTTAgtatcattgctcttgccttggtggtttggatagccccgcaaggtgctgta Alignment from Pairagon GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tatggagtcctataaggccagaagttttgctttggctttctctgttacagGAAGGAGACAGTGCCCTACATGATGCTGTGCAAGATCAACTCTACAAAAATATTAAACTGTTGCTCTTACATGGGACAGACATGATGGCAGCCAAGAACTTAgtatcattgctcttgccttggtggtttggatagccccgcaaggtgctgta Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tatggagtcctataaggccagaagttttgctttggctttctctgttacagGAAGGAGACAGTGCCCTACATGATGCTGTGCAAGATCAACTCTACAAAAATATTAAACTGTTGCTCTTACATGGGACAGACATGATGGCAGCCAAGAACTTAgtatcattgctcttgccttggtggtttggatagccccgcaaggtgctgta Alignment from Exonerate_coding2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tatggagtcctataaggccagaagttttgctttggctttctctgttacagGAAGGAGACAGTGCCCTACATGATGCTGTGCAAGATCAACTCTACAAAAATATTAAACTGTTGCTCTTACATGGGACAGACATGATGGCAGCCAAGAACTTAgtatcattgctcttgccttggtggtttggatagccccgcaaggtgctgta Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG tatggagtcctataaggccagaagttttgctttggctttctctgttacagGAAGGAGACAGTGCCCTACATGATGCTGTGCAAGATCAACTCTACAAAAATATTAAACTGTTGCTCTTACATGGGACAGACATGATGGCAGCCAAGAACTTAgtatcattgctcttgccttggtggtttggatagccccgcaaggtgctgta #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATG-CTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCCTCAAAA-TCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaatttccaccccccatctctattccagGGACT Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCCTCAAAATCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaatttatttgtaaccattttctcccagGGACT Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCCTCAAAATCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaatttccaccccccatctctattccagGGACT Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCCTCAAAATCCAGCACAATT---TGCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaatttccaccccccatctctattccagGGACT Alignment from Pairagon CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCCTCAAAATCCAGCACAATTTGCT---GATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaatttccaccccccatctctattccagGGACT Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCCTCAAAATCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaatttccaccccccatctctattccagGGACT Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCCTCAAAATCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaatttccaccccccatctctattccagGGACT Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG---------------------------------------------GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCCTCAAAATCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGGTGAGGACTGGTAAAAAAAATTTCCACCCCCCATCTCTATTCCAGGGACT #### Arl2_ID1477_2 --> 1 - 2 Original Alignment tGGCTTGGACAACGCTGGCAAA-ACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCgg gtggtaatgccatagatcttagagacctcccttttccttttaattctcagtGGTTTAGATAAGGCTACCAAACACAACCA-TCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTgggtgggtagggcactgactctgaggtcatggtcatggtgagatactgagca Alignment from CESAR tGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCgg gtggtaatgccatagatcttagagacctcccttttccttttaattctcagtGGTTTAGATAAGGCTACCAAACACAACCATCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTgggtgggtagggcactgactctgaggtcatggtcatggtgagatccttgctc Alignment from Spaln_aa2Genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAACACAACCATCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagatactgagca Alignment from Spaln_nt2Genome TGGCTTGGACAACGCTGGCAAA-ACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAACACAACCAT-CTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAA---ACTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagatactgagca Alignment from Pairagon TGGCTTGGACAACGCTGGCAAA-ACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAACACAACCAT-CTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagatactgagca Alignment from Exonerate_protein2genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAACACAACCATCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagatactgagca Alignment from Exonerate_coding2genome gtggtaatgccatagatcttagagacctcccttttccttttaattctcagtggtttagataaggctaccaaacacaaccatctcaaaaagtttaatggagaggatgtggaaaccatctctttgacactagggatcaacattaaactggagcaccgtgggtgggtagggcactgactctgaggtcatggtcatggtgagatactgagca Alignment from GeneWise TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAACACAACCATCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagatactgagca #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAA-GGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG ttagtctcttcagactaaccttctctattcccttgcccctcccccaacagATGCGCTGGACTCGTGGTGTCTCCGTGTGGCCTGTTGGCCTGGTGGGTGGCCTACGATTTGAACGGTCCCC-AGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTGCTATTAGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCTGCCAATTGTACTCAGgtttggggtcagttagcagatcagaggaaatgggggactgtgggctaagc Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG ttagtctcttcagactaaccttctctattcccttgcccctcccccaacagATGCGCTGGACTCGTGGTGTCTCCGTGTGGCCTGTTGGCCTGGTGGGTGGCCTACGATTTGAACGGTCCCCAGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTGCTATTAGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCTGCCAATTGTACTCAGgtttggggtcagttagcagatcagaggaaatgggggactgtgggctaagc Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG ttagtctcttcagactaaccttctctattcccttgcccctcccccaacagATGCGCTGGACTCGTGGTGTCTCCGTGTGGCCTGTTGGCCTGGTGGGTGGCCTACGATTTGAACGGTCCCCAGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTGCTATTAGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCTGCCAATTGTACTCAGgtttggggtcagttagcagatcagaggaaatgggggactgtgggctaagc Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG ttagtctcttcagactaaccttctctattcccttgcccctcccccaacagATGCGCTGGACTCGTGGTGTCTCCGTGTGGCCTGTTGGCCTGGTGGGTGGCCTACGATTTGAACGGTCCCCAGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTGCTATTAGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCTGCCAATTGTACTCAGgtttggggtcagttagcagatcagaggaaatgggggactgtgggctaagc Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG ttagtctcttcagactaaccttctctattcccttgcccctcccccaacagATGCGCTGGACTCGTGGTGTCTCCGTGTGGCCTGTTGGCCTGGTGGGTGGCCTACGATTTGAACGGTCCCCAGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTGCTATTAGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCTGCCAATTGTACTCAGgtttggggtcagttagcagatcagaggaaatgggggactgtgggctaagc Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG ttagtctcttcagactaaccttctctattcccttgcccctcccccaacagATGCGCTGGACTCGTGGTGTCTCCGTGTGGCCTGTTGGCCTGGTGGGTGGCCTACGATTTGAACGGTCCCCAGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTGCTATTAGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCTGCCAATTGTACTCAGgtttggggtcagttagcagatcagaggaaatgggggactgtgggctaagc Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG ttagtctcttcagactaaccttctctattcccttgcccctcccccaacagATGCGCTGGACTCGTGGTGTCTCCGTGTGGCCTGTTGGCCTGGTGGGTGGCCTACGATTTGAACGGTCCCCAGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTGCTATTAGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCTGCCAATTGTACTCAGgtttggggtcagttagcagatcagaggaaatgggggactgtgggctaagc Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG ttagtctcttcagactaaccttctctattcccttgcccctcccccaacagATGCGCTGGACTCGTGGTGTCTCCGTGTGGCCTGTTGGCCTGGTGGGTGGCCTACGATTTGAACGGTCCCCAGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTGCTATTAGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCTGCCAATTGTACTCAGgtttggggtcagttagcagatcagaggaaatgggggactgtgggctaagc #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTACCAGGACTCAGTTACCCA-CTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCCTGGAAACCT-TGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from CESAR GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCCTGGAAACCTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCCTGGAAACCTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCCTGGAAACCTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Pairagon GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCCTGGAAACCTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCCTGGAAACCTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCCTGGAAACCTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCCTGGAAACCTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCT-GCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTCGCCTCAGCCA-GTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCaggtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTCGCCTCAGCCAGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCaggtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTCGCCTCAGCCAGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCT-GCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCC------TACGGCTCGCCTCAGCCA-GTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAG-----------------CGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCTACGGCTCGCCTCAGCC-----------------------AGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTCGCCTCAGCCAGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTCGCCTCAGCCAGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTCGCCTCAGCCAGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga #### Best1_ID2637_2 --> 1 - 1 Original Alignment aATGGTTCTCTCGAGTGATCAGCAG-CTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg tcacagtgcgagtaaaagcttagagaattttcctttcccctttatttcagaATGATTCTCTCAAGTGACCAGCAGCCTTTTGT-CAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCATTTGTCCTAggtgagtgcttgttgtagctctagtcctatctctacctggcttccatacat Alignment from CESAR aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg tcacagtgcgagtaaaagcttagagaattttcctttcccctttatttcagaATGATTCTCTCAAGTGACCAGCAGCCTTTTGTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCATTTGTCCTAggtgagtgcttgttgtagctctagtcctatctctacctggcttccatacat Alignment from Spaln_aa2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcgagtaaaagcttagagaattttcctttcccctttatttcagAATGATTCTCTCAAGTGACCAGCAGCCTTTTGTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCATTTGTCCTAGgtgagtgcttgttgtagctctagtcctatctctacctggcttccatacat Alignment from Spaln_nt2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcgagtaaaagcttagagaattttcctttcccctttatttcagAATGATTCTCTCAAGTGACCAGCAGCCTTTTGTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCATTTGTCCTAGgtgagtgcttgttgtagctctagtcctatctctacctggcttccatacat Alignment from Pairagon AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcgagtaaaagcttagagaattttcctttcccctttatttcagAATGATTCTCTCAAGTGACCAGCAGCCTTTTGTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCATTTGTCCTAGgtgagtgcttgttgtagctctagtcctatctctacctggcttccatacat Alignment from Exonerate_protein2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcgagtaaaagcttagagaattttcctttcccctttatttcagAATGATTCTCTCAAGTGACCAGCAGCCTTTTGTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCATTTGTCCTAGgtgagtgcttgttgtagctctagtcctatctctacctggcttccatacat Alignment from Exonerate_coding2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcgagtaaaagcttagagaattttcctttcccctttatttcagAATGATTCTCTCAAGTGACCAGCAGCCTTTTGTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCATTTGTCCTAGgtgagtgcttgttgtagctctagtcctatctctacctggcttccatacat Alignment from GeneWise AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcgagtaaaagcttagagaattttcctttcccctttatttcagAATGATTCTCTCAAGTGACCAGCAGCCTTTTGTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCATTTGTCCTAGgtgagtgcttgttgtagctctagtcctatctctacctggcttccatacat #### Bscl2_ID2423_6 --> 0 - 2 Original Alignment TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAG-CGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag cctcaatgtagccagaatcacatgtagacctatttcattcctgtttacagTATGTGCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACCGCA-TGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCaggtgagtaaactatagaagggacaatttttctacaatgtgtcccaaatagt Alignment from CESAR TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag cctcaatgtagccagaatcacatgtagacctatttcattcctgtttacagTATGTGCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACCGCATGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCaggtgagtaaactatagaagggacaatttttctacaatgtgtcccaaatagt Alignment from Spaln_aa2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacctatttcattcctgtttacagTATGTGCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACCGCATGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtgagtaaactatagaagggacaatttttctacaatgtgtcccaaatagt Alignment from Spaln_nt2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacctatttcattcctgtttacagTATGTGCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACCGCATGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtgagtaaactatagaagggacaatttttctacaatgtgtcccaaatagt Alignment from Pairagon TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacctatttcattcctgtttacagTATGTGCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACCGCATGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtgagtaaactatagaagggacaatttttctacaatgtgtcccaaatagt Alignment from Exonerate_protein2genome cctcaatgtagccagaatcacatgtagacctatttcattcctgtttacagtatgtgccaacaactggagcaattattgaaattcacagtaaaccgcatgagatgtatggagcctacctctggatccatgcccactttacagggctcaggtgagtaaactatagaagggacaatttttctacaatgtgtcccaaatagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacctatttcattcctgtttacagTATGTGCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACCGCATGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtgagtaaactatagaagggacaatttttctacaatgtgtcccaaatagt #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAACTCA-CACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg tttctcatagggcagtataggatcacaagagatactttaatggtttttagGTCAATACATGTCAAAGGGACAACTCACCAGC-CGGA------GACCATATTTCACACCACCAGCCAggtaattgaattaggcattaggaatttggaaatagacttgggagtccttca Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg tttctcatagggcagtataggatcacaagagatactttaatggtttttagGTCAATACATGTCAAAGGGACAACTCACCAGCCGGAGAC------CATATTTCACACCACCAGCCAggtaattgaattaggcattaggaatttggaaatagacttgggagtccttca Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tttctcatagggcagtataggatcacaagagatactttaatggtttttagGTCAATACATGTCAAAGGGACAACTCACCAGCCGGAGAC------CATATTTCACACCACCAGCCAGgtaattgaattaggcattaggaatttggaaatagacttgggagtccttca Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tttctcatagggcagtataggatcacaagagatactttaatggtttttagGTCAATACATGTCAAAGGGACAACTCACCAGCCGGAGAC------CATATTTCACACCACCAGCCAGgtaattgaattaggcattaggaatttggaaatagacttgggagtccttca Alignment from Pairagon GTTAATATCCGACAAAGGGATAAC---------------------TCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tttctcatagggcagtataggatcacaagagatactttaatggtttttagGTCAATACATGTCAAAGGGACAACTCACCAGCCGGAGACCATATTTCACACCAC---------------------------CAGCCAGgtaattgaattaggcattaggaatttggaaatagacttgggagtccttca Alignment from Exonerate_protein2genome tttctcatagggcagtataggatcacaagagatactttaatggtttttaggtcaatacatgtcaaagggacaactcaccagccggagaccatatttcacaccaccagccaggtaattgaattaggcattaggaatttggaaatagacttgggagtccttca Alignment from Exonerate_coding2genome tttctcatagggcagtataggatcacaagagatactttaatggtttttaggtcaatacatgtcaaagggacaactcaccagccggagaccatatttcacaccaccagccaggtaattgaattaggcattaggaatttggaaatagacttgggagtccttca Alignment from GeneWise tttctcatagggcagtataggatcacaagagatactttaatggtttttaggtcaatacatgtcaaagggacaactcaccagccggagaccatatttcacaccaccagccaggtaattgaattaggcattaggaatttggaaatagacttgggagtccttca #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAG-AAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg aatttttaatactctcacccccattgcactccatctctttctgtttgtagagGGGCAA---CCAGAAGAGAAGCAAAGCAA-GAAGTGGCCACTGAATGGGGAGGAGAAGCGGGAACCAGATGCTGGTGCTggtgagaagtgcttggggggtcacttgcttaacataatgtagtagagaaga Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg aatttttaatactctcacccccattgcactccatctctttctgtttgtagagGGGCAA---CCAGAAGAGAAGCAAAGCAAGAAGTGGCCACTGAATGGGGAGGAGAAGCGGGAACCAGATGCTGGTGCTggtgagaagtgcttggggggtcacttgcttaacataatgtagtagagaaga Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG aatttttaatactctcacccccattgcactccatctctttctgtttgtagAGGGGCAA---CCAGAAGAGAAGCAAAGCAAGAAGTGGCCACTGAATGGGGAGGAGAAGCGGGAACCAGATGCTGGTGCTGgtgagaagtgcttggggggtcacttgcttaacataatgtagtagagaaga Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG aatttttaatactctcacccccattgcactccatctctttctgtttgtagAGGGGCAAC---CAGAAGAGAAGCAAAGCAAGAAGTGGCCACTGAATGGGGAGGAGAAGCGGGAACCAGATGCTGGTGCTGgtgagaagtgcttggggggtcacttgcttaacataatgtagtagagaaga Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAG---------------AGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG aatttttaatactctcacccccattgcactccatctctttctgtttgtagAGGGGC------------------AACCAGAAGAGAAGCAAAGCAAGAAGTGGCCACTGAATGGGGAGGAGAAGCGGGAACCAGATGCTGGTGCTGgtgagaagtgcttggggggtcacttgcttaacataatgtagtagagaaga Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG aatttttaatactctcacccccattgcactccatctctttctgtttgtagAGGGGCAA---CCAGAAGAGAAGCAAAGCAAGAAGTGGCCACTGAATGGGGAGGAGAAGCGGGAACCAGATGCTGGTGCTGgtgagaagtgcttggggggtcacttgcttaacataatgtagtagagaaga Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG aatttttaatactctcacccccattgcactccatctctttctgtttgtagAGGGGCAA---CCAGAAGAGAAGCAAAGCAAGAAGTGGCCACTGAATGGGGAGGAGAAGCGGGAACCAGATGCTGGTGCTGgtgagaagtgcttggggggtcacttgcttaacataatgtagtagagaaga Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG aatttttaatactctcacccccattgcactccatctctttctgtttgtagAGGGGCAA---CCAGAAGAGAAGCAAAGCAAGAAGTGGCCACTGAATGGGGAGGAGAAGCGGGAACCAGATGCTGGTGCTGgtgagaagtgcttggggggtcacttgcttaacataatgtagtagagaaga #### Btaf1_ID7248_27 --> 0 - 2 Original Alignment GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAA-ACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag gttttatcttaatttctttgccttccccgttttctctgtctcttacacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTGGGAAAACACATTACAGT-CATCTGTATTCTAGCAGGAGATCACTGTCAGaggtaccagaggcagagacttggaaatgcttgcttaaaacctgatcaatcta Alignment from CESAR GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag gttttatcttaatttctttgccttccccgttttctctgtctcttacacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTGGGAAAACACATTACAGTCATCTGTATTCTAGCAGGAGATCACTGTCAGaggtaccagaggcagagacttggaaatgcttgcttaaaacctgatcaatcta Alignment from Spaln_aa2Genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gttttatcttaatttctttgccttccccgttttctctgtctcttacacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTGGGAAAACACATTACAGTCATCTGTATTCTAGCAGGAGATCACTGTCAGAGgtaccagaggcagagacttggaaatgcttgcttaaaacctgatcaatcta Alignment from Spaln_nt2Genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gttttatcttaatttctttgccttccccgttttctctgtctcttacacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTGGGAAAACACATTACAGTCATCTGTATTCTAGCAGGAGATCACTGTCAGAGgtaccagaggcagagacttggaaatgcttgcttaaaacctgatcaatcta Alignment from Pairagon GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAA-ACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gttttatcttaatttctttgccttccccgttttctctgtctcttacacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTGGGAAAACACATTACAGT-CATCTGTATTCTAGCAGGAGATCACTGTCAGAGgtaccagaggcagagacttggaaatgcttgcttaaaacctgatcaatcta Alignment from Exonerate_protein2genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gttttatcttaatttctttgccttccccgttttctctgtctcttacacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTGGGAAAACACATTACAGTCATCTGTATTCTAGCAGGAGATCACTGTCAGAGgtaccagaggcagagacttggaaatgcttgcttaaaacctgatcaatcta Alignment from Exonerate_coding2genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gttttatcttaatttctttgccttccccgttttctctgtctcttacacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTGGGAAAACACATTACAGTCATCTGTATTCTAGCAGGAGATCACTGTCAGAGgtaccagaggcagagacttggaaatgcttgcttaaaacctgatcaatcta Alignment from GeneWise GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gttttatcttaatttctttgccttccccgttttctctgtctcttacacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTGGGAAAACACATTACAGTCATCTGTATTCTAGCAGGAGATCACTGTCAGAGgtaccagaggcagagacttggaaatgcttgcttaaaacctgatcaatcta #### Btaf1_ID7249_28 --> 1 - 2 Original Alignment gGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAAT-CCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAag cttgcttaaaacctgatcaatctaataacactcttgtctttgctcttcaggGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGCCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCTGAATCCCACTAC-TTATACCGGCCCTTCCACTGAGAGGATAaggtacctgggtggactatctaacaatccatagctaaagctaaggtcctttg Alignment from CESAR gGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAag cttgcttaaaacctgatcaatctaataacactcttgtctttgctcttcaggGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGCCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCTGAATCCCACTACTTATACCGGCCCTTCCACTGAGAGGATAaggtacctgggtggactatctaacaatccatagctaaagctaaggtcctttg Alignment from Spaln_aa2Genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG cttgcttaaaacctgatcaatctaataacactcttgtctttgctcttcagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGCCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCTGAATCCCACTACTTATACCGGCCCTTCCACTGAGAGGATAAGgtacctgggtggactatctaacaatccatagctaaagctaaggtcctttg Alignment from Spaln_nt2Genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG cttgcttaaaacctgatcaatctaataacactcttgtctttgctcttcagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGCCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCTGAATCCCACTACTTATACCGGCCCTTCCACTGAGAGGATAAGgtacctgggtggactatctaacaatccatagctaaagctaaggtcctttg Alignment from Pairagon GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG cttgcttaaaacctgatcaatctaataacactcttgtctttgctcttcagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGCCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCTGAATCCCACTACTTATACCGGCCCTTCCACTGAGAGGATAAGgtacctgggtggactatctaacaatccatagctaaagctaaggtcctttg Alignment from Exonerate_protein2genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG cttgcttaaaacctgatcaatctaataacactcttgtctttgctcttcagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGCCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCTGAATCCCACTACTTATACCGGCCCTTCCACTGAGAGGATAAGgtacctgggtggactatctaacaatccatagctaaagctaaggtcctttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG cttgcttaaaacctgatcaatctaataacactcttgtctttgctcttcagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGCCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCTGAATCCCACTACTTATACCGGCCCTTCCACTGAGAGGATAAGgtacctgggtggactatctaacaatccatagctaaagctaaggtcctttg #### Btaf1_ID7250_29 --> 1 - 2 Original Alignment gTTGCAACATCAAGTAAAAAGGCACAATCTG-ATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcaggTTGCAACATCAAGTAAAAAGGCACAATCTTCATAGTGGCAT-ATATGATGTTGTCAGGAACGACATAGACTTTTTTaggtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from CESAR gTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcaggTTGCAACATCAAGTAAAAAGGCACAATCTTCATAGTGGCATATATGATGTTGTCAGGAACGACATAGACTTTTTTaggtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Spaln_aa2Genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTCATAGTGGCATATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Spaln_nt2Genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTCATAGTGGCATATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Pairagon GTTGCAACATCAAGTAAAAAGGCACAATC-TGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTCATAGTGGCAT-ATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Exonerate_protein2genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTCATAGTGGCATATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Exonerate_coding2genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTCATAGTGGCATATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from GeneWise GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTCATAGTGGCATATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg #### Btrc_ID9458_8 --> 0 - 0 Original Alignment ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGAC-GACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttaggatgttttcactgtttaagactcatgtcattacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGCAAAGGGGTTTATTGTTTACAGTATGATCGATCAGAAGA-AGTCAGTGGTCTTCAAGACAACACCATCAAGgtaagggaggctgcttgtatcaccatcagatttcccttttagggtcagaa Alignment from CESAR ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttaggatgttttcactgtttaagactcatgtcattacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGCAAAGGGGTTTATTGTTTACAGTATGATCGATCAGAAGAAGTCAGTGGTCTTCAAGACAACACCATCAAGgtaagggaggctgcttgtatcaccatcagatttcccttttagggtcagaa Alignment from Spaln_aa2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttaggatgttttcactgtttaagactcatgtcattacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGCAAAGGGGTTTATTGTTTACAGTATGATCGATCAGAAGAAGTCAGTGGTCTTCAAGACAACACCATCAAGgtaagggaggctgcttgtatcaccatcagatttcccttttagggtcagaa Alignment from Spaln_nt2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGA-CGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttaggatgttttcactgtttaagactcatgtcattacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGCAAAGGGGTTTATTGTTTACAGTATGATCGATCAGAAGA-AGTCAGTGGTCTTCAAGACAACACCATCAAGgtaagggaggctgcttgtatcaccatcagatttcccttttagggtcagaa Alignment from Pairagon ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGA-CGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttaggatgttttcactgtttaagactcatgtcattacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGCAAAGGGGTTTATTGTTTACAGTATGATCGATCAGAAGA-AGTCAGTGGTCTTCAAGACAACACCATCAAGgtaagggaggctgcttgtatcaccatcagatttcccttttagggtcagaa Alignment from Exonerate_protein2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttaggatgttttcactgtttaagactcatgtcattacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGCAAAGGGGTTTATTGTTTACAGTATGATCGATCAGAAGAAGTCAGTGGTCTTCAAGACAACACCATCAAGgtaagggaggctgcttgtatcaccatcagatttcccttttagggtcagaa Alignment from Exonerate_coding2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGT--TTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAGATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACAC acaatgggtagttaggatgttttcactgtttaagactcatgtcattacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGCAAA--GGGGTTTATTGTTTACAGTATGATCGATCAGAAGAAGTCAGTGGTCTTCAAGACAACACCATCAAGGTAAGGGAGGCTGCTTGTATCACCATCAGATTTCCCTTTTAGGGTCAGAA Alignment from GeneWise ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttaggatgttttcactgtttaagactcatgtcattacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGCAAAGGGGTTTATTGTTTACAGTATGATCGATCAGAAGAAGTCAGTGGTCTTCAAGACAACACCATCAAGgtaagggaggctgcttgtatcaccatcagatttcccttttagggtcagaa #### Btrc_ID9463_12 --> 1 - 2 Original Alignment gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTA-CGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg acttgttgtgaatactgtaacttactttattgagctatttcttttcaaaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACCGCTGCATTC-GTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATgggtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from CESAR gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTA-CGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg acttgttgtgaatactgtaacttactttattgagctatttcttttcaaaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACCGCTGCATTC-GTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATgggtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Spaln_aa2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACCGCTGCATTCGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Spaln_nt2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACCGCTGCATTCGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Pairagon GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTA-CGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACCGCTGCATTCG-TTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Exonerate_protein2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACCGCTGCATTCGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Exonerate_coding2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACCGCTGCATTCGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from GeneWise GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACCGCTGCATTCGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAG-CTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG taacaccgtgcactaacctaagccctctttctaattcatcttttcattaggtGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGATGGGTCCCAAGCTTACTAG-AGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtatcccttaggtggtgggtggcagtggctaacagatttataactcagta Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG taacaccgtgcactaacctaagccctctttctaattcatcttttcattaggtGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGATGGGTCCCAAGCTTACTAGAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtatcccttaggtggtgggtggcagtggctaacagatttataactcagta Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG taacaccgtgcactaacctaagccctctttctaattcatcttttcattagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGATGGGTCCCAAGCTTACTAGAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtatcccttaggtggtgggtggcagtggctaacagatttataactcagta Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG taacaccgtgcactaacctaagccctctttctaattcatcttttcattagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGATGGGTCCCAAGCTTACTAGAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtatcccttaggtggtgggtggcagtggctaacagatttataactcagta Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG taacaccgtgcactaacctaagccctctttctaattcatcttttcattagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGATGGGTCCCAAGCTTACTAGAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtatcccttaggtggtgggtggcagtggctaacagatttataactcagta Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG taacaccgtgcactaacctaagccctctttctaattcatcttttcattagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGATGGGTCCCAAGCTTACTAGAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtatcccttaggtggtgggtggcagtggctaacagatttataactcagta Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG taacaccgtgcactaacctaagccctctttctaattcatcttttcattagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGATGGGTCCCAAGCTTACTAGAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtatcccttaggtggtgggtggcagtggctaacagatttataactcagta Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG taacaccgtgcactaacctaagccctctttctaattcatcttttcattagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGATGGGTCCCAAGCTTACTAGAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtatcccttaggtggtgggtggcagtggctaacagatttataactcagta #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG aatatcagggtaacaagcagaaaccaacatggcttgcctttcatccacagggTTTTCCAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTA-CTTTGATCTCTTTAGAgtaggtaaatactctaccccacctgatcagcatggggggtgctgccactt Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG aatatcagggtaacaagcagaaaccaacatggcttgcctttcatccacagggTTTTCCAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTACTTTGATCTCTTTAGAgtaggtaaatactctaccccacctgatcagcatggggggtgctgccactt Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG aatatcagggtaacaagcagaaaccaacatggcttgcctttcatccacagGGTTTTCCAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTACTTTGATCTCTTTAGAgtaggtaaatactctaccccacctgatcagcatggggggtgctgccactt Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG aatatcagggtaacaagcagaaaccaacatggcttgcctttcatccacagGGTTTTCCAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTA-CTTTGATCTCTTTAGAgtaggtaaatactctaccccacctgatcagcatggggggtgctgccactt Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG aatatcagggtaacaagcagaaaccaacatggcttgcctttcatccacagGGTTTTCCAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTA-CTTTGATCTCTTTAGAgtaggtaaatactctaccccacctgatcagcatggggggtgctgccactt Alignment from Exonerate_protein2genome aatatcagggtaacaagcagaaaccaacatggcttgcctttcatccacagggttttccaaactactagaccgaggcctagatggtcgttgttactttgatctctttagagtaggtaaatactctaccccacctgatcagcatggggggtgctgccactt Alignment from Exonerate_coding2genome aatatcagggtaacaagcagaaaccaacatggcttgcctttcatccacagggttttccaaactactagaccgaggcctagatggtcgttgttactttgatctctttagagtaggtaaatactctaccccacctgatcagcatggggggtgctgccactt Alignment from GeneWise aatatcagggtaacaagcagaaaccaacatggcttgcctttcatccacagggttttccaaactactagaccgaggcctagatggtcgttgttactttgatctctttagagtaggtaaatactctaccccacctgatcagcatggggggtgctgccactt #### Capn1_ID1368_8 --> 1 - 2 Original Alignment cTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAG-ATGGAGGATGGGGAGTTCtg agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagcCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGCATGG-AGATGGAGAATTTtggtaaagaattagatatccttccctggcacacccctctgtggaaggccatc Alignment from CESAR cTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCtg agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagcCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGCATGGAGATGGAGAATTTtggtaaagaattagatatccttccctggcacacccctctgtggaagttttta Alignment from Spaln_aa2Genome CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGCATGGAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaaggccatc Alignment from Spaln_nt2Genome CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAG-ATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGCATGGA-GATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaaggccatc Alignment from Pairagon CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAG-ATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGCATGGA-GATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaaggccatc Alignment from Exonerate_protein2genome CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGCATGGAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaaggccatc Alignment from Exonerate_coding2genome AGCTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacAGCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGCATGGAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaaggccatc Alignment from GeneWise CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGCATGGAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaaggccatc #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCT-ACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG gtgcgtgtcaatttcattgccttgcctggtgttctctttcccctccacaggaAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTTTGACGTTCCTGGATGACTTTGTTCCACCTCGGCATGCTCACTTACTTCC-GGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCACAGgtaagtgtacctccctgaatgtattcctaaatgtgtatgccctttcatgc Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG gtgcgtgtcaatttcattgccttgcctggtgttctctttcccctccacaggaAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTTTGACGTTCCTGGATGACTTTGTTCCACCTCGGCATGCTCACTTACTTCCGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCACAGgtaagtgtacctccctgaatgtattcctaaatgtgtatgccctttcatgc Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG gtgcgtgtcaatttcattgccttgcctggtgttctctttcccctccacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTTTGACGTTCCTGGATGACTTTGTTCCACCTCGGCATGCTCACTTACTTCCGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCACAGgtaagtgtacctccctgaatgtattcctaaatgtgtatgccctttcatgc Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG gtgcgtgtcaatttcattgccttgcctggtgttctctttcccctccacagGAAATATGCTCCTCTGCCTGT---CTGCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTTTGACGTTCCTGGATGACTTTGTTCCACCTCGGCATGCTCACTTACTTCCGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCACAGgtaagtgtacctccctgaatgtattcctaaatgtgtatgccctttcatgc Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCT-ACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG gtgcgtgtcaatttcattgccttgcctggtgttctctttcccctccacagGAAATATGCTCCTCTGCCTGT---CTGCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTTTGACGTTCCTGGATGACTTTGTTCCACCTCGGCATGCTCACTTACTTCC-GGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCACAGgtaagtgtacctccctgaatgtattcctaaatgtgtatgccctttcatgc Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG gtgcgtgtcaatttcattgccttgcctggtgttctctttcccctccacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTTTGACGTTCCTGGATGACTTTGTTCCACCTCGGCATGCTCACTTACTTCCGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCACAGgtaagtgtacctccctgaatgtattcctaaatgtgtatgccctttcatgc Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG gtgcgtgtcaatttcattgccttgcctggtgttctctttcccctccacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTTTGACGTTCCTGGATGACTTTGTTCCACCTCGGCATGCTCACTTACTTCCGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCACAGgtaagtgtacctccctgaatgtattcctaaatgtgtatgccctttcatgc Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG gtgcgtgtcaatttcattgccttgcctggtgttctctttcccctccacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTTTGACGTTCCTGGATGACTTTGTTCCACCTCGGCATGCTCACTTACTTCCGGCAGGTCTGGGGCCAGAATCCGGCCGTGGCAAGGAGGCAGCAGAACTGGCCCGGAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCACAGgtaagtgtacctccctgaatgtattcctaaatgtgtatgccctttcatgc #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCT-CCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg ggagtaacagtatggaggatatgacaggtatttcctgctgtctttcataggcTGCCCTGGGGCGGAAGTCACCTTGTGTGTTCTAGGTTCCCCTCA-CACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTggtggggtattgcttctataataccctaccttctcctacaaaattggaaca Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg ggagtaacagtatggaggatatgacaggtatttcctgctgtctttcataggcTGCCCTGGGGCGGAAGTCACCTTGTGTGTTCTAGGTTCCCCTCACACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTggtggggtattgcttctataataccctaccttctcctacaaaattggaaca Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ggagtaacagtatggaggatatgacaggtatttcctgctgtctttcatagGCTGCCCTGGGGCGGAAGTCACCTTGTGTGTTCTAGGTTCCCCTCACACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtggggtattgcttctataataccctaccttctcctacaaaattggaaca Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ggagtaacagtatggaggatatgacaggtatttcctgctgtctttcatagGCTGCCCTGGGGCGGAAGTCACCTTGTGTGTTCTAGGTTCCCCTCACACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtggggtattgcttctataataccctaccttctcctacaaaattggaaca Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ggagtaacagtatggaggatatgacaggtatttcctgctgtctttcatagGCTGCCCTGGGGCGGAAGTCACCTTGTGTGTTCTAGGTTCCCCTCACACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtggggtattgcttctataataccctaccttctcctacaaaattggaaca Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ggagtaacagtatggaggatatgacaggtatttcctgctgtctttcatagGCTGCCCTGGGGCGGAAGTCACCTTGTGTGTTCTAGGTTCCCCTCACACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtggggtattgcttctataataccctaccttctcctacaaaattggaaca Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ggagtaacagtatggaggatatgacaggtatttcctgctgtctttcatagGCTGCCCTGGGGCGGAAGTCACCTTGTGTGTTCTAGGTTCCCCTCACACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtggggtattgcttctataataccctaccttctcctacaaaattggaaca Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ggagtaacagtatggaggatatgacaggtatttcctgctgtctttcatagGCTGCCCTGGGGCGGAAGTCACCTTGTGTGTTCTAGGTTCCCCTCACACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtggggtattgcttctataataccctaccttctcctacaaaattggaaca #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTCTTGGACTCC-ATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg tgatgcggccacggcctgtcccactgtaagaattgctcttctctcccaagaaTGGTACTTCATGATCCTAGACTCCCATCTTCCTTA-CATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTTTATGACCCATCAAATAATCTGggtaagtcaatacaggcggtttataatggttacagaatacatcatttagag Alignment from CESAR aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg tgatgcggccacggcctgtcccactgtaagaattgctcttctctcccaagaaTGGTACTTCATGATCCTAGACTCCCATCTTCCTTACATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTTTATGACCCATCAAATAATCTGggtaagtcaatacaggcggtttataatggttacagaatacatcatttagag Alignment from Spaln_aa2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgcggccacggcctgtcccactgtaagaattgctcttctctcccaagAATGGTACTTCATGATCCTAGACTCCCATCTTCCTTACATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTTTATGACCCATCAAATAATCTGGgtaagtcaatacaggcggtttataatggttacagaatacatcatttagag Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCTTGGACTCC-ATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgcggccacggcctgtcccactgtaagaattgctcttctctcccaagAATGGTACTTCATGATCCTAGACTCCCATCTTCCT-TACATCTTTGTACTAGAGGCAG---TCAAACTTATTGCTTTGGGCTTAGAGTATTTTTATGACCCATCAAATAATCTGGgtaagtcaatacaggcggtttataatggttacagaatacatcatttagag Alignment from Pairagon AATGGTACTTCATGGTCTTGGACT-CCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgcggccacggcctgtcccactgtaagaattgctcttctctcccaagAATGGTACTTCATGATCCTAGACTCCCATCTTCCT-TACATCTTTGTACTAGAGGCAG---TCAAACTTATTGCTTTGGGCTTAGAGTATTTTTATGACCCATCAAATAATCTGGgtaagtcaatacaggcggtttataatggttacagaatacatcatttagag Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgcggccacggcctgtcccactgtaagaattgctcttctctcccaagAATGGTACTTCATGATCCTAGACTCCCATCTTCCTTACATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTTTATGACCCATCAAATAATCTGGgtaagtcaatacaggcggtttataatggttacagaatacatcatttagag Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgcggccacggcctgtcccactgtaagaattgctcttctctcccaagAATGGTACTTCATGATCCTAGACTCCCATCTTCCTTACATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTTTATGACCCATCAAATAATCTGGgtaagtcaatacaggcggtttataatggttacagaatacatcatttagag Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgcggccacggcctgtcccactgtaagaattgctcttctctcccaagAATGGTACTTCATGATCCTAGACTCCCATCTTCCTTACATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTTTATGACCCATCAAATAATCTGGgtaagtcaatacaggcggtttataatggttacagaatacatcatttagag #### Catsper1_ID930_7 --> 2 - 2 Original Alignment CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATC-CAGTACTTCATCTTCCTCaa CCCAAggtacagtaacctaaggctacagacttgctcctcttcttttgtagctGCCTGGTACATCATACCAATCCTCATGATCTATATTGTTATCCCAAT-CTTTACATTCCTCaagtaactcactgaactgttccgatagccacccaccaagcacttacagtcct Alignment from CESAR CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa CCCAAggtgggctaacctaaggctacagacttgctcctcttcttttgtagctGCCTGGTACATCATACCAATCCTCATGATCTATATTGTTATCCCAATCTTTACATTCCTCaagtaactcactgaactgttccgatagccacccaccaagcacttacagtcct Alignment from Spaln_aa2Genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtacagtaacctaaggctacagacttgctcctcttcttttgtagCTGCCTGGTACATCATACCAATCCTCATGATCTATATTGTTATCCCAATCTTTACATTCCTCAAgtaactcactgaactgttccgatagccacccaccaagcacttacagtcct Alignment from Spaln_nt2Genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtacagtaacctaaggctacagacttgctcctcttcttttgtagCTGCCTGGTACATCATACCAATCCTCATGATCTATATTGTTATCCCAATCTTTACATTCCTCAAgtaactcactgaactgttccgatagccacccaccaagcacttacagtcct Alignment from Pairagon CCCAAGG--------------------------------------------CGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGGTACAGTAACCTAAGGCTACAGACTTGCTCCTCTTCTTTTGTAGCTGCCTGGTACATCATACCAATCCTCATGATCTATATTGTTATCCCAATCTTTACATTCCTCAAgtaactcactgaactgttccgatagccacccaccaagcacttacagtcct Alignment from Exonerate_protein2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtacagtaacctaaggctacagacttgctcctcttcttttgtagCTGCCTGGTACATCATACCAATCCTCATGATCTATATTGTTATCCCAATCTTTACATTCCTCAAgtaactcactgaactgttccgatagccacccaccaagcacttacagtcct Alignment from Exonerate_coding2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtacagtaacctaaggctacagacttgctcctcttcttttgtagCTGCCTGGTACATCATACCAATCCTCATGATCTATATTGTTATCCCAATCTTTACATTCCTCAAgtaactcactgaactgttccgatagccacccaccaagcacttacagtcct Alignment from GeneWise CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtacagtaacctaaggctacagacttgctcctcttcttttgtagCTGCCTGGTACATCATACCAATCCTCATGATCTATATTGTTATCCCAATCTTTACATTCCTCAAgtaactcactgaactgttccgatagccacccaccaagcacttacagtcct #### Cbwd1_ID5353_14 --> 0 - 1 Original Alignment GGACTGGTGTCTATCAAAGACAAA-CCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtagccctatgttgtcaactgaacacttcccctctctatcccagGGACTGGTGTCTATCAAAGTTAAGCCCACATCAAA-GATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCATGTCAGCTAGTTTTCATTggtagggaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from CESAR GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtagccctatgttgtcaactgaacacttcccctctctatcccagGGACTGGTGTCTATCAAAGTTAAGCCCACATCAAAGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCATGTCAGCTAGTTTTCATTggtagggaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Spaln_aa2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagccctatgttgtcaactgaacacttcccctctctatcccagGGACTGGTGTCTATCAAAGTTAAGCCCACATCAAAGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCATGTCAGCTAGTTTTCATTGgtagggaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Spaln_nt2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagccctatgttgtcaactgaacacttcccctctctatcccagGGACTGGTGTCTATCAAAGTTAAGCCCACATCAAAGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCATGTCAGCTAGTTTTCATTGgtagggaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Pairagon GGACTGGTGTCTATCAAAGACAAA-CCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagccctatgttgtcaactgaacacttcccctctctatcccagGGACTGGTGTCTATCAAAGTTAAGCCCACATCAAA-GATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCATGTCAGCTAGTTTTCATTGgtagggaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Exonerate_protein2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagccctatgttgtcaactgaacacttcccctctctatcccagGGACTGGTGTCTATCAAAGTTAAGCCCACATCAAAGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCATGTCAGCTAGTTTTCATTGgtagggaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Exonerate_coding2genome aattatgtagccctatgttgtcaactgaacacttcccctctctatcccagggactggtgtctatcaaagttaagcccacatcaaagattgtgcaaggtatccatgatttgtatgacttggaagagagccttgtgaattggaaggatgatgcagcaagggcatgtcagctagttttcattggtagggaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from GeneWise GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagccctatgttgtcaactgaacacttcccctctctatcccagGGACTGGTGTCTATCAAAGTTAAGCCCACATCAAAGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCATGTCAGCTAGTTTTCATTGgtagggaacactaatgtactactgaatgtactactgggttctgtgtctaa #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGA-AGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg gtcatgatgaccttgcctgatccatacattgattggcctcttctatccagggTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCTGGCGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTGTTGGACGACAGTCCAGCAT-ATTCAGTCCCAGC---ACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAggtatatgctgttttactataatttgaatttccattgttttaagtggtcag Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg gtcatgatgaccttgcctgatccatacattgattggcctcttctatccagggTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCTGGCGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTGTTGGACGACAGTCCAGCATATTCAGTCCCAGC---ACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAggtatatgctgttttactataatttgaatttccattgttttaagtggtcag Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gtcatgatgaccttgcctgatccatacattgattggcctcttctatccagGGTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCTGGCGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTGTTGGACGACAGTCCAGCATATTCAGTCCCAGC---ACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtatatgctgttttactataatttgaatttccattgttttaagtggtcag Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGA-AGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gtcatgatgaccttgcctgatccatacattgattggcctcttctatccagGGTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCTGGCGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTGTTGGACGACAGTCCAGCAT-ATTCAGTCCCAG---CACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtatatgctgttttactataatttgaatttccattgttttaagtggtcag Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCT GGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gtcatgatgaccttgcctgatccatacattgattggcctcttctatccagGGTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCTGGCGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTgttggacgacagtccagcatattcagtcccag-----------------------------------CACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtatatgctgttttactataatttgaatttccattgttttaagtggtcag Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gtcatgatgaccttgcctgatccatacattgattggcctcttctatccagGGTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCTGGCGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTGTTGGACGACAGTCCAGCATATTCAGTCCC---AGCACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtatatgctgttttactataatttgaatttccattgttttaagtggtcag Alignment from Exonerate_coding2genome gtcatgatgaccttgcctgatccatacattgattggcctcttctatccagggtcatcgtcaccagcacccatgcaccaaattgagagctccctttgcttgggagatgagaccctagctggcgggcagcgacggagtctcagttctcagttctctgttggacgacagtccagcatattcagtcccagcacatcacggcaatggttcaaacagcaaaggccaggcccccttggggcactgagtacctacagcaaaggtatatgctgttttactataatttgaatttccattgttttaagtggtcag Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gtcatgatgaccttgcctgatccatacattgattggcctcttctatccagGGTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCTGGCGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTGTTGGACGACAGTCCAGCATATTCAGTCCC---AGCACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtatatgctgttttactataatttgaatttccattgttttaagtggtcag #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGAC-CAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa gtgagtccacttagggccaggttgaggtaaaacttgtgtttctcttataggGACCAACTCAATGGCTTGCGCCAACAGAAACAGAAGCTGGTGGAT---ATCATGGACCCAATACC-GGTAGTACAGCCTGGGCCACTCCCCCATACTaagtaagatagcaccttatgtatcatgttagtattttgctttattccacagc Alignment from CESAR gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa gtaggtccacttagggccaggttgaggtaaaacttgtgtttctcttataggGACCAACTCAATGGCTTGCGCCAACAGAAACAGAAGCTGGTGGAT---ATCATGGACCCAATACCGGTAGTACAGCCTGGGCCACTCCCCCATACTaagtaagatagcaccttatgtatcatgttagtattttgctttattccacagc Alignment from Spaln_aa2Genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA gtgagtccacttagggccaggttgaggtaaaacttgtgtttctcttatagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGAAGCTGGTGGAT---ATCATGGACCCAATACCGGTAGTACAGCCTGGGCCACTCCCCCATACTAAgtaagatagcaccttatgtatcatgttagtattttgctttattccacagc Alignment from Spaln_nt2Genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACC-AGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA gtgagtccacttagggccaggttgaggtaaaacttgtgtttctcttatagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGAAGCTGGTGG---ATATCATGGACCCAATACCG-GTAGTACAGCCTGGGCCACTCCCCCATACTAAgtaagatagcaccttatgtatcatgttagtattttgctttattccacagc Alignment from Pairagon GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACC----------AGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA gtgagtccacttagggccaggttgaggtaaaacttgtgtttctcttatagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGAAGCTGGTGG---ATATCATGGACCCAATACCGGTAGTAC----------AGCCTGGGCCACTCCCCCATACTAAgtaagatagcaccttatgtatcatgttagtattttgctttattccacagc Alignment from Exonerate_protein2genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA gtgagtccacttagggccaggttgaggtaaaacttgtgtttctcttatagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGAAGCTGGTGGAT---ATCATGGACCCAATACCGGTAGTACAGCCTGGGCCACTCCCCCATACTAAgtaagatagcaccttatgtatcatgttagtattttgctttattccacagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA gtgagtccacttagggccaggttgaggtaaaacttgtgtttctcttatagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGAAGCTGGTGGAT---ATCATGGACCCAATACCGGTAGTACAGCCTGGGCCACTCCCCCATACTAAgtaagatagcaccttatgtatcatgttagtattttgctttattccacagc #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGG-GCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT attgatgtggagggcaacaagctgttcctctgccttctgttctcccccagCTACATCAGTGCCCGGTG---CTT---GAAGGGCGCACGGCGAG-TGGACCTTGGGCTGCGGAGACACAGAACGGGCAGCTTATTGTAGTAGAGCAAAATgtaaacaagaaggtgggggcctaccttagaggtaatagggctcacaacat Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT attgatgtggagggcaacaagctgttcctctgccttctgttctcccccagCTACATCAGTGCCCGGTG---CTTGAAGGGCGCACGGCGAGTGGACCTTGGGCTGCGGAGACACAGAACGGGCAGCTTATTGTAGTAGAGCAAAATgtaaacaagaaggtgggggcctaccttagaggtaatagggctcacaacat Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT attgatgtggagggcaacaagctgttcctctgccttctgttctcccccagCTACATCAGTGCCCGGTG---CTTGAAGGGCGCACGGCGAGTGGACCTTGGGCTGCGGAGACACAGAACGGGCAGCTTATTGTAGTAGAGCAAAATgtaaacaagaaggtgggggcctaccttagaggtaatagggctcacaacat Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCG-CGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT attgatgtggagggcaacaagctgttcctctgccttctgttctcccccagCTACATCAGTGCCCGGTG---CTTGAAGGGCGCACGGCGAG-TGGACCTTGGGCTGCGGAGACACAGAACGGGCAGCTTATTGTAGTAGAGCAAAATgtaaacaagaaggtgggggcctaccttagaggtaatagggctcacaacat Alignment from Pairagon CTGCGCCAGTACCCGGTG-------------------GACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT attgatgtggagggcaacaagctgttcctctgccttctgttctcccccagCTACATCAGTGCCCGGTGCTTGAAGGGCGCACGGCGAG----------------------TGGACCTTGGGCTGCGGAGACACAGAACGGGCAGCTTATTGTAGTAGAGCAAAATgtaaacaagaaggtgggggcctaccttagaggtaatagggctcacaacat Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT attgatgtggagggcaacaagctgttcctctgccttctgttctcccccagCTACATCAGTGCCCGGTG---CTTGAAGGGCGCACGGCGAGTGGACCTTGGGCTGCGGAGACACAGAACGGGCAGCTTATTGTAGTAGAGCAAAATgtaaacaagaaggtgggggcctaccttagaggtaatagggctcacaacat Alignment from Exonerate_coding2genome GCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCA attgatgtggagggcaacaagctgttcctctgccttctgttctcccccagctacatcagtgcccggtgcttgaagggcgcacggcgagtggaccttgggctgcggagacacagaacgggcagcttattgtagTAGAGCAAAATGTAAACAAGAAGGTGGGGGCCTACCTTAGAGGTAATAGGGCTCACAACAT Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT-------------------------------------------------- attgatgtggagggcaacaagctgttcctctgccttctgttctcccccagCTACATCAGTGCCCGGTG---CTTGAAGGGCGCACGGCGAGTGGACCTTGGGCTGCGGAGACACAGAACGGGCAGCTTATTGTAGTAGAGCAAAATGTAAACAAGAAGGTGGGGGCCTACCTTAGAGGTAATAGGGCTCACAACAT #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGG------CATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGT-AAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttactacgttctaatgtgatttttgttttttcaggTATCAGTATCAGCATCTGGAGCAACGACTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTCAAGGAACAGG-ATTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtttgtccgcccaacttgaaagacaaccggcactggtaattcattaatca Alignment from CESAR gTACCGG------CATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttactacgttctaatgtgatttttgttttttcaggTATCAGTATCAGCATCTGGAGCAACGACTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTCAAGGAACAGGATTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtttgtccgcccaacttgaaagacaaccggcactggtaattcattaatca Alignment from Spaln_aa2Genome G------TACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttactacgttctaatgtgatttttgttttttcagGTATCAGTATCAGCATCTGGAGCAACGACTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTCAAGGAACAGGATTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtttgtccgcccaacttgaaagacaaccggcactggtaattcattaatca Alignment from Spaln_nt2Genome GTACCGG------CATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGT-AAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttactacgttctaatgtgatttttgttttttcagGTATCAGTATCAGCATCTGGAGCAACGACTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTCAAGGAACAGG-ATTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtttgtccgcccaacttgaaagacaaccggcactggtaattcattaatca Alignment from Pairagon --------------------------------------------------------GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGT-AAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG GAGCAGTAAAGTCTAGTTACTACGTTCTAATGTGATTTTTGTTTTTTCAGGTATCAGTATCAGCATCTGGAGCAACGACTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTCAAGGAACAGG-ATTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtttgtccgcccaacttgaaagacaaccggcactggtaattcattaatca Alignment from Exonerate_protein2genome G------TACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttactacgttctaatgtgatttttgttttttcagGTATCAGTATCAGCATCTGGAGCAACGACTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTCAAGGAACAGGATTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtttgtccgcccaacttgaaagacaaccggcactggtaattcattaatca Alignment from Exonerate_coding2genome G------TACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAGCTG gagcagtaaagtctagttactacgttctaatgtgatttttgttttttcagGTATCAGTATCAGCATCTGGAGCAACGACTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTCAAGGAACAGGATTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGGTTtgtccgcccaacttgaaagacaaccggcactggtaattcattaatca Alignment from GeneWise -------TACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttactacgttctaatgtgatttttgttttttcagGTATCAGTATCAGCATCTGGAGCAACGACTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTCAAGGAACAGGATTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATTGAGgtttgtccgcccaacttgaaagacaaccggcactggtaattcattaatca #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCA-CCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtagggcaacatgatcagaaagaactttttatatgatttcctgtagcaTCCCTTCCTGGCCCAGCACCCCT-ATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCCGTCTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGGAGCCAGgtaaggcctctgttgcttcatctccgagtaatctagttccttgtgggtac Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtagggcaacatgatcagaaagaactttttatatgatttcctgtagcaTCCCTTCCTGGCCCAGCACCCCTATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCCGTCTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGGAGCCAGgtaaggcctctgttgcttcatctccgagtaatctagttccttgtgggtac Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtagggcaacatgatcagaaagaactttttatatgatttcctgtagCATCCCTTCCTGGCCCAGCACCCCTATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCCGTCTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGGAGCCAGgtaaggcctctgttgcttcatctccgagtaatctagttccttgtgggtac Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtagggcaacatgatcagaaagaactttttatatgatttcctgtagCATCCCTTCCTGGCCCAGCACCCCTATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCCGTCTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCA---ACATAT------GGCACAGCTTGGGAGCCAGgtaaggcctctgttgcttcatctccgagtaatctagttccttgtgggtac Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtagggcaacatgatcagaaagaactttttatatgatttcctgtagCATCCCTTCCTGGCCCAGCACCCCTATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCCGTCTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGGAGCCAGgtaaggcctctgttgcttcatctccgagtaatctagttccttgtgggtac Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtagggcaacatgatcagaaagaactttttatatgatttcctgtagCATCCCTTCCTGGCCCAGCACCCCTATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCCGTCTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGGAGCCAGgtaaggcctctgttgcttcatctccgagtaatctagttccttgtgggtac Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtagggcaacatgatcagaaagaactttttatatgatttcctgtagCATCCCTTCCTGGCCCAGCACCCCTATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCCGTCTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGGAGCCAGgtaaggcctctgttgcttcatctccgagtaatctagttccttgtgggtac Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtagggcaacatgatcagaaagaactttttatatgatttcctgtagCATCCCTTCCTGGCCCAGCACCCCTATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCCGTCTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAACATATG---------GCACAGCTTGGGAGCCAGgtaaggcctctgttgcttcatctccgagtaatctagttccttgtgggtac #### Ccdc88b_ID1838_11 --> 0 - 0 Original Alignment GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGG-GAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagtaccagagaggctcgacctctctagttttcttaaattattttgaagGAGAAGGAGGTCCTCTCCCAAGCTGTAGAGGCTTCAACTGGCCTTCTTGAAGAACAGTTGGAGGTTGCACAGAAGCGTGCAGCAAGACTGCATGAGACCCAGAGACGAAAATC-CCTGGTGCGCACACGATTGGGGGAAACCCATGTGgtgacatgtaatgcaggttgcaaatggggaccatgacttaactctagttt Alignment from CESAR GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagtaccagagaggctcgacctctctagttttcttaaattattttgaagGAGAAGGAGGTCCTCTCCCAAGCTGTAGAGGCTTCAACTGGCCTTCTTGAAGAACAGTTGGAGGTTGCACAGAAGCGTGCAGCAAGACTGCATGAGACCCAGAGACGAAAATCCCTGGTGCGCACACGATTGGGGGAAACCCATGTGgtgacatgtaatgcaggttgcaaatggggaccatgacttaactctagttt Alignment from Spaln_aa2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagtaccagagaggctcgacctctctagttttcttaaattattttgaagGAGAAGGAGGTCCTCTCCCAAGCTGTAGAGGCTTCAACTGGCCTTCTTGAAGAACAGTTGGAGGTTGCACAGAAGCGTGCAGCAAGACTGCATGAGACCCAGAGACGAAAATCCCTGGTGCGCACACGATTGGGGGAAACCCATGTGgtgacatgtaatgcaggttgcaaatggggaccatgacttaactctagttt Alignment from Spaln_nt2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagtaccagagaggctcgacctctctagttttcttaaattattttgaagGAGAAGGAGGTCCTCTCCCAAGCTGTAGAGGCTTCAACTGGCCTTCTTGAAGAACAGTTGGAGGTTGCACAGAAGCGTGCAGCAAGACTGCATGAGACCCAGAGACGAAAATCCCTGGTGCGCACACGATTGGGGGAAACCCATGTGgtgacatgtaatgcaggttgcaaatggggaccatgacttaactctagttt Alignment from Pairagon GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagtaccagagaggctcgacctctctagttttcttaaattattttgaagGAGAAGGAGGTCCTCTCCCAAGCTGTAGAGGCTTCAACTGGCCTTCTTGAAGAACAGTTGGAGGTTGCACAGAAGCGTGCAGCAAGACTGCATGAGACCCAGAGACGAAAATCCCTGGTGCGCACACGATTGGGGGAAACCCATGTGgtgacatgtaatgcaggttgcaaatggggaccatgacttaactctagttt Alignment from Exonerate_protein2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagtaccagagaggctcgacctctctagttttcttaaattattttgaagGAGAAGGAGGTCCTCTCCCAAGCTGTAGAGGCTTCAACTGGCCTTCTTGAAGAACAGTTGGAGGTTGCACAGAAGCGTGCAGCAAGACTGCATGAGACCCAGAGACGAAAATCCCTGGTGCGCACACGATTGGGGGAAACCCATGTGgtgacatgtaatgcaggttgcaaatggggaccatgacttaactctagttt Alignment from Exonerate_coding2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagtaccagagaggctcgacctctctagttttcttaaattattttgaagGAGAAGGAGGTCCTCTCCCAAGCTGTAGAGGCTTCAACTGGCCTTCTTGAAGAACAGTTGGAGGTTGCACAGAAGCGTGCAGCAAGACTGCATGAGACCCAGAGACGAAAATCCCTGGTGCGCACACGATTGGGGGAAACCCATGTGgtgacatgtaatgcaggttgcaaatggggaccatgacttaactctagttt Alignment from GeneWise GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagtaccagagaggctcgacctctctagttttcttaaattattttgaagGAGAAGGAGGTCCTCTCCCAAGCTGTAGAGGCTTCAACTGGCCTTCTTGAAGAACAGTTGGAGGTTGCACAGAAGCGTGCAGCAAGACTGCATGAGACCCAGAGACGAAAATCCCTGGTGCGCACACGATTGGGGGAAACCCATGTGgtgacatgtaatgcaggttgcaaatggggaccatgacttaactctagttt #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGC-CTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG tctcggccctttgtcccctggttcattgtgatattctgcttttctcatagACTCAGGCGTTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAAGCAGAGGCATTAGAA---GAGGCAGGTCACCCTGCCCC-CCTGCAGGAAGATCTCCGGCGATGTCGTGAGAAGCTTCAAGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtaggttggtccacacatgagccagagaaatgggtaacgtcaatgctgct Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG tctcggccctttgtcccctggttcattgtgatattctgcttttctcatagACTCAGGCGTTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAAGCAGAGGCATTA---GAAGAGGCAGGTCACCCTGCCCCCCTGCAGGAAGATCTCCGGCGATGTCGTGAGAAGCTTCAAGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtaggttggtccacacatgagccagagaaatgggtaacgtcaatgctgct Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG tctcggccctttgtcccctggttcattgtgatattctgcttttctcatagACTCAGGCGTTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAAGCAGAGGCATTA---GAAGAGGCAGGTCACCCTGCCCCCCTGCAGGAAGATCTCCGGCGATGTCGTGAGAAGCTTCAAGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtaggttggtccacacatgagccagagaaatgggtaacgtcaatgctgct Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG tctcggccctttgtcccctggttcattgtgatattctgcttttctcatagACTCAGGCGTTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAAGCAGAGGCATT--AGAAGAGGCAGGTCACCCTGCC-CCCCTGCAGGAAGATCTCCGGCGATGTCGTGAGAAGCTTCAAGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtaggttggtccacacatgagccagagaaatgggtaacgtcaatgctgct Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCA-------------------CTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG tctcggccctttgtcccctggttcattgtgatattctgcttttctcatagACTCAGGCGTTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAAGCAGAGGCATTAGAAGAGGCAGGTCACCCTG----------------------CCCCCCTGCAGGAAGATCTCCGGCGATGTCGTGAGAAGCTTCAAGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtaggttggtccacacatgagccagagaaatgggtaacgtcaatgctgct Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG tctcggccctttgtcccctggttcattgtgatattctgcttttctcatagACTCAGGCGTTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAAGCAGAGGCATTA---GAAGAGGCAGGTCACCCTGCCCCCCTGCAGGAAGATCTCCGGCGATGTCGTGAGAAGCTTCAAGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtaggttggtccacacatgagccagagaaatgggtaacgtcaatgctgct Alignment from Exonerate_coding2genome AGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG tctcggccctttgtcccctggttcattgtgatattctgcttttctcatAGACTCAGGCGTTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAAGCAGAGGCATTA---GAAGAGGCAGGTCACCCTGCCCCCCTGCAGGAAGATCTCCGGCGATGTCGTGAGAAGCTTCAAGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtaggttggtccacacatgagccagagaaatgggtaacgtcaatgctgct Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG tctcggccctttgtcccctggttcattgtgatattctgcttttctcatagACTCAGGCGTTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAAGCAGAGGCATTAGAAGAG---GCAGGTCACCCTGCCCCCCTGCAGGAAGATCTCCGGCGATGTCGTGAGAAGCTTCAAGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtaggttggtccacacatgagccagagaaatgggtaacgtcaatgctgct #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCA-GACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtggcacctagcccagacacatcgacctcggggctgtgctcgcagGAGGAGCTACAGCTTTTAATCTTATCTGCACCACCACGACCTCCAGC-TACAGGGTGTGAACCCTTTTCAggtaagtgttctaacctcgtctaccatttgactcccatatataccctcatc Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtggcacctagcccagacacatcgacctcggggctgtgctcgcagGAGGAGCTACAGCTTTTAATCTTATCTGCACCACCACGACCTCCAGCTACAGGGTGTGAACCCTTTTCAggtaagtgttctaacctcgtctaccatttgactcccatatataccctcatc Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtggcacctagcccagacacatcgacctcggggctgtgctcgcagGAGGAGCTACAGCTTTTAATCTTATCTGCACCACCACGACCTCCAGCTACAGGGTGTGAACCCTTTTCAGgtaagtgttctaacctcgtctaccatttgactcccatatataccctcatc Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCA-GACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtggcacctagcccagacacatcgacctcggggctgtgctcgcagGAGGAGCTACAGCTTTTAATCTTATCTGCACCACCACGACCTCCAG-CTACAGGGTGTGAACCCTTTTCAGgtaagtgttctaacctcgtctaccatttgactcccatatataccctcatc Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCA-GACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtggcacctagcccagacacatcgacctcggggctgtgctcgcagGAGGAGCTACAGCTTTTAATCTTATCTGCACCACCACGACCTCCAG-CTACAGGGTGTGAACCCTTTTCAGgtaagtgttctaacctcgtctaccatttgactcccatatataccctcatc Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtggcacctagcccagacacatcgacctcggggctgtgctcgcagGAGGAGCTACAGCTTTTAATCTTATCTGCACCACCACGACCTCCAGCTACAGGGTGTGAACCCTTTTCAGgtaagtgttctaacctcgtctaccatttgactcccatatataccctcatc Alignment from Exonerate_coding2genome acccagtggcacctagcccagacacatcgacctcggggctgtgctcgcaggaggagctacagcttttaatcttatctgcaccaccacgacctccagctacagggtgtgaacccttttcaggtaagtgttctaacctcgtctaccatttgactcccatatataccctcatc Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtggcacctagcccagacacatcgacctcggggctgtgctcgcagGAGGAGCTACAGCTTTTAATCTTATCTGCACCACCACGACCTCCAGCTACAGGGTGTGAACCCTTTTCAGgtaagtgttctaacctcgtctaccatttgactcccatatataccctcatc #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTC-TGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttatgattaacagaactctgactactgatatctgcctcctccaactagtTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGGGGACGAGATGGTACTGCTGCTTGTCAGATGTGGACTCTCCTGTCATT-ATGGGGGCAGTTGAGAGACTTTTATCAGgtcaggccagtatggtgaaatctgagacccagtggcacctagcccagaca Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttatgattaacagaactctgactactgatatctgcctcctccaactagtTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGGGGACGAGATGGTACTGCTGCTTGTCAGATGTGGACTCTCCTGTCATTATGGGGGCAGTTGAGAGACTTTTATCAGgtcaggccagtatggtgaaatctgagacccagtggcacctagcccagaca Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttatgattaacagaactctgactactgatatctgcctcctccaactagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGGGGACGAGATGGTACTGCTGCTTGTCAGATGTGGACTCTCCTGTCATTATGGGGGCAGTTGAGAGACTTTTATCAGgtcaggccagtatggtgaaatctgagacccagtggcacctagcccagaca Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTC-TGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttatgattaacagaactctgactactgatatctgcctcctccaactagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGGGGACGAGATGGTACTGCTGCTTGTCAGATGTGGACTCTCCTGTCAT-TATGGGGGCAGTTGAGAGACTTTTATCAGgtcaggccagtatggtgaaatctgagacccagtggcacctagcccagaca Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCT-CTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttatgattaacagaactctgactactgatatctgcctcctccaactagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGGGGACGAGATGGTACTGCTGCTTGTCAGATGTGGACTCTCCTGTCAT-TATGGGGGCAGTTGAGAGACTTTTATCAGgtcaggccagtatggtgaaatctgagacccagtggcacctagcccagaca Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttatgattaacagaactctgactactgatatctgcctcctccaactagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGGGGACGAGATGGTACTGCTGCTTGTCAGATGTGGACTCTCCTGTCATTATGGGGGCAGTTGAGAGACTTTTATCAGgtcaggccagtatggtgaaatctgagacccagtggcacctagcccagaca Alignment from Exonerate_coding2genome GCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttatgattaacagaactctgactactgatatctgcctcctccaactagtTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGGGGACGAGATGGTACTGCTGCTTGTCAGATGTGGACTCTCCTGTCATTATGGGGGCAGTTGAGAGACTTTTATCAGgtcaggccagtatggtgaaatctgagacccagtggcacctagcccagaca Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttatgattaacagaactctgactactgatatctgcctcctccaactagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGGGGACGAGATGGTACTGCTGCTTGTCAGATGTGGACTCTCCTGTCATTATGGGGGCAGTTGAGAGACTTTTATCAGgtcaggccagtatggtgaaatctgagacccagtggcacctagcccagaca #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGT-ACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ccccggtattgtgtgcttgcttccctactcacccttgactttatttttagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCAGAAAAGTCAGCAGGAGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTCACAG-AAAAAGATCCCTACGGTTGATTGATGGAGCTTTACTTCTTCGGGTTTTGGAGATTatgtaagtgacacagtgaaatttaactatggatgtcggccaagaatggtagg Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ccccggtattgtgtgcttgcttccctactcacccttgactttatttttagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCAGAAAAGTCAGCAGGAGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTCACAGAAAAAGATCCCTACGGTTGATTGATGGAGCTTTACTTCTTCGGGTTTTGGAGATTatgtaagtgacacagtgaaatttaactatggatgtcggccaagaatggtagg Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccccggtattgtgtgcttgcttccctactcacccttgactttatttttagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCAGAAAAGTCAGCAGGAGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTCACAGAAAAAGATCCCTACGGTTGATTGATGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatggatgtcggccaagaatggtagg Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccccggtattgtgtgcttgcttccctactcacccttgactttatttttagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCAGAAAAGTCAGCAGGAGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTCACAGAAAAAGATCCCTACGGTTGATTGATGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatggatgtcggccaagaatggtagg Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGT-ACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccccggtattgtgtgcttgcttccctactcacccttgactttatttttagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCAGAAAAGTCAGCAGGAGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTCACAGA-AAAAGATCCCTACGGTTGATTGATGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatggatgtcggccaagaatggtagg Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccccggtattgtgtgcttgcttccctactcacccttgactttatttttagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCAGAAAAGTCAGCAGGAGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTCACAGAAAAAGATCCCTACGGTTGATTGATGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatggatgtcggccaagaatggtagg Alignment from Exonerate_coding2genome ccccggtattgtgtgcttgcttccctactcacccttgactttatttttaggctttaggtttagctggccttgtgggggatgcagaaaagtcagcaggaggaactgaagaggatgaagaggaagaggaggaagaaggagccctttgtcacagaaaaagatccctacggttgattgatggagctttacttcttcgggttttggagattatgtaagtgacacagtgaaatttaactatggatgtcggccaagaatggtagg Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccccggtattgtgtgcttgcttccctactcacccttgactttatttttagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCAGAAAAGTCAGCAGGAGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTCACAGAAAAAGATCCCTACGGTTGATTGATGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatggatgtcggccaagaatggtagg #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTA-GCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tgcctaattaagtgttcaatactgtaggccccccttccatctccctgcagatTATGCATTTCTCAATTATGCACCCTCCTTAATACGCTG-CGCATGTGTGGCCTTTTCCAGGATTATACTTCGACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACTGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGctgtgagtagagcctcataattgaaatcagactgctggaagcagctatgcag Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tgcctaattaagtgttcaatactgtaggccccccttccatctccctgcagatTATGCATTTCTCAATTATGCACCCTCCTTAATACGCTGCGCATGTGTGGCCTTTTCCAGGATTATACTTCGACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACTGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGctgtgagtagagcctcataattgaaatcagactgctggaagcagctatgcag Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgcctaattaagtgttcaatactgtaggccccccttccatctccctgcagATTATGCATTTCTCAATTATGCACCCTCCTTAATACGCTGCGCATGTGTGGCCTTTTCCAGGATTATACTTCGACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACTGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgagtagagcctcataattgaaatcagactgctggaagcagctatgcag Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTA-GCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgcctaattaagtgttcaatactgtaggccccccttccatctccctgcagATTATGCATTTCTCAATTATGCACCCTCCTTAATACGCTGC-GCATGTGTGGCCTTTTCCAGGATTATACTTCGACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACTGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgagtagagcctcataattgaaatcagactgctggaagcagctatgcag Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTA-GCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgcctaattaagtgttcaatactgtaggccccccttccatctccctgcagATTATGCATTTCTCAATTATGCACCCTCCTTAATACGCTGC-GCATGTGTGGCCTTTTCCAGGATTATACTTCGACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACTGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgagtagagcctcataattgaaatcagactgctggaagcagctatgcag Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgcctaattaagtgttcaatactgtaggccccccttccatctccctgcagATTATGCATTTCTCAATTATGCACCCTCCTTAATACGCTGCGCATGTGTGGCCTTTTCCAGGATTATACTTCGACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACTGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgagtagagcctcataattgaaatcagactgctggaagcagctatgcag Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgcctaattaagtgttcaatactgtaggccccccttccatctccctgcagATTATGCATTTCTCAATTATGCACCCTCCTTAATACGCTGCGCATGTGTGGCCTTTTCCAGGATTATACTTCGACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACTGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgagtagagcctcataattgaaatcagactgctggaagcagctatgcag Alignment from GeneWise ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgcctaattaagtgttcaatactgtaggccccccttccatctccctgcagATTATGCATTTCTCAATTATGCACCCTCCTTAATACGCTGCGCATGTGTGGCCTTTTCCAGGATTATACTTCGACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACTGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgagtagagcctcataattgaaatcagactgctggaagcagctatgcag #### Ccs_ID661_7 --> 0 - 2 Original Alignment GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGG-GAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gTTGGCCT gcacatatgcaaggcagatgaagctgacgacctctgccaactctattcagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGACGAAGATG-TGTGGGCTGGGGAGGCCACCCTTTATCCAAGATTACTGGGAATTTGGAGAAAaggtacgccatataacaatcaacttcttgtttttctcgcccaagaCTATCAT Alignment from CESAR GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gTTGGCCT gcacatatgcaaggcagatgaagctgacgacctctgccaactctattcagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCTGGGGAGGCCACCCTTTATCCAAGATTACTGGGAATTTGGAGAAAaggtacgccatataacaatcaatgcacatgtttcctccttctagaCTATCAT Alignment from Spaln_aa2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG GTTGGCCT gcacatatgcaaggcagatgaagctgacgacctctgccaactctattcagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCTGGGGAGGCCACCCTTTATCCAAGATTACTGGGAATTTGGAGAAAAGgtacgccatataacaatcaacttcttgtttttctcgcccaagACTATCAT Alignment from Spaln_nt2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG GTTGGCCT gcacatatgcaaggcagatgaagctgacgacctctgccaactctattcagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCTGGGGAGGCCACCCTTTATCCAAGATTACTGGGAATTTGGAGAAAAGgtacgccatataacaatcaacttcttgtttttctcgcccaagACTATCAT Alignment from Pairagon GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGG-GAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGGTTGGCC------------------------------------------T gcacatatgcaaggcagatgaagctgacgacctctgccaactctattcagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGACGAAGATG-TGTGGGCTGGGGAGGCCACCCTTTATCCAAGATTACTGGGAATTTGGAGAAAAGGTACGCCATATAACAATCAACTTCTTGTTTTTCTCGCCCAAGACTATCAT Alignment from Exonerate_protein2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG GTTGGCCT gcacatatgcaaggcagatgaagctgacgacctctgccaactctattcagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCTGGGGAGGCCACCCTTTATCCAAGATTACTGGGAATTTGGAGAAAAGgtacgccatataacaatcaacttcttgtttttctcgcccaagACTATCAT Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG GTTGGCCT gcacatatgcaaggcagatgaagctgacgacctctgccaactctattcagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCTGGGGAGGCCACCCTTTATCCAAGATTACTGGGAATTTGGAGAAAAGgtacgccatataacaatcaacttcttgtttttctcgcccaagACTATCAT #### Cd274_ID6274_5 --> 2 - 1 Original Alignment tgAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGAT-ACAAGCTCAAAAAACCGAAATg gtttgtccttactaacattctaactcaccttttatatctgtgtattatagtgAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCACAAGCT-AAAAAACCGGAATggtattgggatcaatgtacggaaattttggtgaccattataaaccagatta Alignment from CESAR tgAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATg gtttgtccttactaacattctaactcaccttttatatctgtgtattatagtgAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCACAAGCTAAAAAACCGGAATggtattgggatcaatgtacggaaattttggtgaccattataaaccagatta Alignment from Spaln_aa2Genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATG gtttgtccttactaacattctaactcaccttttatatctgtgtattatagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCACAAGCTAAAAAACCGGAATGgtattgggatcaatgtacggaaattttggtgaccattataaaccagatta Alignment from Spaln_nt2Genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGAT-ACAAGCTCAAAAAACCGAAATG gtttgtccttactaacattctaactcaccttttatatctgtgtattatagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCACAAGCT-AAAAAACCGGAATGgtattgggatcaatgtacggaaattttggtgaccattataaaccagatta Alignment from Pairagon TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGAT-ACAAGCTCAAAAAACCGAAATG gtttgtccttactaacattctaactcaccttttatatctgtgtattatagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCACAAGCT-AAAAAACCGGAATGgtattgggatcaatgtacggaaattttggtgaccattataaaccagatta Alignment from Exonerate_protein2genome gtttgtccttactaacattctaactcaccttttatatctgtgtattatagtgaggatgctggatgagaaatgcagtgttgagcatcacaagctaaaaaaccggaatggtattgggatcaatgtacggaaattttggtgaccattataaaccagatta Alignment from Exonerate_coding2genome gtttgtccttactaacattctaactcaccttttatatctgtgtattatagtgaggatgctggatgagaaatgcagtgttgagcatcacaagctaaaaaaccggaatggtattgggatcaatgtacggaaattttggtgaccattataaaccagatta Alignment from GeneWise gtttgtccttactaacattctaactcaccttttatatctgtgtattatagtgaggatgctggatgagaaatgcagtgttgagcatcacaagctaaaaaaccggaatggtattgggatcaatgtacggaaattttggtgaccattataaaccagatta #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTT-GGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagaGATGTGGAGCCAGACAATGTTCTA---AGCATGAATGGGCAT---TGCTTGGCTGACTTTCGGCACCTGCC-ATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagaGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCAT---TGCTTGGCTGACTTTCGGCACCTGCCATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagAGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCAT---TGCTTGGCTGACTTTCGGCACCTGCCATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Spaln_nt2Genome CATGAATGGCCACATCCGCCTGGCAGACTTT-GGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagagatgtggagccagacaatgttctaagCATGAATGGGCA---TTGCTTGGCTGACTTTCGGCACCTGCC-ATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Pairagon GGATGTGAAGCCTGACAA-----------------------------------------------CATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagAGATGTGGAGCCAGACAATGTTCTAAGCATGAATGGGCATTGCTTGGCTGACTTTCGGCACCTGCCAT-----------------------------------------------------GCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagAGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCATTGC---TTGGCTGACTTTCGGCACCTGCCATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Exonerate_coding2genome ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagagatgtggagccagacaatgttctaagcatgaatgggcattgcttggctgactttcggcacctgccatgcctcaacatcaatgccaaggtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagAGATGTGGAGCCAGACAATGTTCTA---AGCATGAATGGGCATTGC---TTGGCTGACTTTCGGCACCTGCCATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg #### Cdc42bpg_ID1578_8 --> 0 - 0 Original Alignment GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAG-GAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttgtagttaggtccctccattccatgctttatcttgttaaagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGCGAGC-GCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTCGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGATGATGACACCCTCAACCGCTCAgtgaggtgcagagactgtaattagacacattctttcacctaaaagaacac Alignment from CESAR GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttgtagttaggtccctccattccatgctttatcttgttaaagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGCGAGCGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTCGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGATGATGACACCCTCAACCGCTCAgtgaggtgcagagactgtaattagacacattctttcacctaaaagaacac Alignment from Spaln_aa2Genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttgtagttaggtccctccattccatgctttatcttgttaaagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGCGAGCGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTCGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGATGATGACACCCTCAACCGCTCAgtgaggtgcagagactgtaattagacacattctttcacctaaaagaacac Alignment from Spaln_nt2Genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttgtagttaggtccctccattccatgctttatcttgttaaagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGCGAGCGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTCGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGATGATGACACCCTCAACCGCTCAgtgaggtgcagagactgtaattagacacattctttcacctaaaagaacac Alignment from Pairagon GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttgtagttaggtccctccattccatgctttatcttgttaaagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGCGAGCGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTCGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGATGATGACACCCTCAACCGCTCAgtgaggtgcagagactgtaattagacacattctttcacctaaaagaacac Alignment from Exonerate_protein2genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttgtagttaggtccctccattccatgctttatcttgttaaagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGCGAGCGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTCGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGATGATGACACCCTCAACCGCTCAgtgaggtgcagagactgtaattagacacattctttcacctaaaagaacac Alignment from Exonerate_coding2genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttgtagttaggtccctccattccatgctttatcttgttaaagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGCGAGCGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTCGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGATGATGACACCCTCAACCGCTCAgtgaggtgcagagactgtaattagacacattctttcacctaaaagaacac Alignment from GeneWise GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttgtagttaggtccctccattccatgctttatcttgttaaagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGCGAGCGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTCGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGATGATGACACCCTCAACCGCTCAgtgaggtgcagagactgtaattagacacattctttcacctaaaagaacac #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCA-TTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg cctcttggttctgggtactacaatcgtgcgtctgtgactctgatccacagatCATCTTCATGGTCCACCTACAACCAC-GGGGTTAGTACATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAggtgagtctggtcagctattagaggtggctgggttccttgtcatgtcccag Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg cctcttggttctgggtactacaatcgtgcgtctgtgactctgatccacagatCATCTTCATGGTCCACCTACAACCACGGGGTTAGTACATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAggtgagtctggtcagctattagaggtggctgggttccttgtcatgtcccag Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG cctcttggttctgggtactacaatcgtgcgtctgtgactctgatccacagATCATCTTCATGGTCCACCTACAACCACGGGGTTAGTACATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtgagtctggtcagctattagaggtggctgggttccttgtcatgtcccag Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCAT-TACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG cctcttggttctgggtactacaatcgtgcgtctgtgactctgatccacagATCATCTTCATGGTCCACCTACAACCAC-GGGGTTAGTACATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtgagtctggtcagctattagaggtggctgggttccttgtcatgtcccag Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG cctcttggttctgggtactacaatcgtgcgtctgtgactctgatccacagatcatcttcatggtccacctacaaccacggggttagtacatcttcataaagAG---------------------------------------------------GTTCAGGTTCTTCAGGAGAAACTGACAGgtgagtctggtcagctattagaggtggctgggttccttgtcatgtcccag Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG cctcttggttctgggtactacaatcgtgcgtctgtgactctgatccacagATCATCTTCATGGTCCACCTACAACCACGGGGTTAGTACATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtgagtctggtcagctattagaggtggctgggttccttgtcatgtcccag Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG cctcttggttctgggtactacaatcgtgcgtctgtgactctgatccacagATCATCTTCATGGTCCACCTACAACCACGGGGTTAGTACATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtgagtctggtcagctattagaggtggctgggttccttgtcatgtcccag Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG cctcttggttctgggtactacaatcgtgcgtctgtgactctgatccacagATCATCTTCATGGTCCACCTACAACCACGGGGTTAGTACATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtgagtctggtcagctattagaggtggctgggttccttgtcatgtcccag #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg acaggcctgacttctcacaccagacccttgccgattttctctgtgtgcagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGACTCCTGAGGGTCAGTCTCAAGAAACTCAACTGAGGAAGCGAAGTAGTAG-CCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAgggtaagtgcatggtacttgctgtcaggaattggcaaaatagaacgatactc Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg acaggcctgacttctcacaccagacccttgccgattttctctgtgtgcagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGACTCCTGAGGGTCAGTCTCAAGAAACTCAACTGAGGAAGCGAAGTAGTAGCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAgggtaagtgcatggtacttgctgtcaggaattggcaaaatactcacaccctc Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG acaggcctgacttctcacaccagacccttgccgattttctctgtgtgcagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGACTCCTGAGGGTCAGTCTCAAGAAACTCAACTGAGGAAGCGAAGTAGTAGCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtaagtgcatggtacttgctgtcaggaattggcaaaatagaacgatactc Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG acaggcctgacttctcacaccagacccttgccgattttctctgtgtgcagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGACTCCTGAGGGTCAGTCTCAAGAAACTCAACTGAGGAAGCGAAGTAGTAGCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtaagtgcatggtacttgctgtcaggaattggcaaaatagaacgatactc Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG acaggcctgacttctcacaccagacccttgccgattttctctgtgtgcagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGACTCCTGAGGGTCAGTCTCAAGAAACTCAACTGAGGAAGCGAAGTAGTAGC-CTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtaagtgcatggtacttgctgtcaggaattggcaaaatagaacgatactc Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG acaggcctgacttctcacaccagacccttgccgattttctctgtgtgcagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGACTCCTGAGGGTCAGTCTCAAGAAACTCAACTGAGGAAGCGAAGTAGTAGCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtaagtgcatggtacttgctgtcaggaattggcaaaatagaacgatactc Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG acaggcctgacttctcacaccagacccttgccgattttctctgtgtgcagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGACTCCTGAGGGTCAGTCTCAAGAAACTCAACTGAGGAAGCGAAGTAGTAGCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtaagtgcatggtacttgctgtcaggaattggcaaaatagaacgatactc Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG acaggcctgacttctcacaccagacccttgccgattttctctgtgtgcagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGACTCCTGAGGGTCAGTCTCAAGAAACTCAACTGAGGAAGCGAAGTAGTAGCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtaagtgcatggtacttgctgtcaggaattggcaaaatagaacgatactc #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAA-CGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gaaaccattgggtaatgaggattaacattgtttttttctattcaatgcagTTGGCAGGTGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACCGGC-GGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTtggtacatctacacagctgggtggcaccattgatactgtgggcccttaacct Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gaaaccattgggtaatgaggattaacattgtttttttctattcaatgcagTTGGCAGGTGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACCGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTtggtacatctacacagctgggtggcaccattgatactgtgggccctctgctt Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacattgtttttttctattcaatgcagTTGGCAGGTGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACCGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtacatctacacagctgggtggcaccattgatactgtgggcccttaacct Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacattgtttttttctattcaatgcagTTGGCAGGTGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACCGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtacatctacacagctgggtggcaccattgatactgtgggcccttaacct Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacattgtttttttctattcaatgcagTTGGCAGGTGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACCGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtacatctacacagctgggtggcaccattgatactgtgggcccttaacct Alignment from Exonerate_protein2genome ACGGCTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacattgtttttttctattcaatGCAGTTGGCAGGTGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACCGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtacatctacacagctgggtggcaccattgatactgtgggcccttaacct Alignment from Exonerate_coding2genome ACGGCTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacattgtttttttctattcaatGCAGTTGGCAGGTGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACCGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtacatctacacagctgggtggcaccattgatactgtgggcccttaacct Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacattgtttttttctattcaatgcagTTGGCAGGTGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACCGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtacatctacacagctgggtggcaccattgatactgtgggcccttaacct #### Cdc42bpg_ID1590_20 --> 1 - 1 Original Alignment cCGCCTGCAGGAGGCTGAGAAGCAAAGT-CAGGCCCTGCAG---CAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaatgtatgagccctcctgggtgaacctcagaactgtttcttcagcCACCTGCAGGAAGCTGAGACACAAAGTCAAGACAC-CCAGCAGCAGGAGGTGGCTGTGCTGAAGGAAGAGCTTCAAGCTCGAGGACCAGGTggtaagtacccacttggatccaaccacaaggcctaacatgtggggaccaga Alignment from CESAR cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAG---GCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaatgtatgagccctcctgggtgaacctcagaactgtttcttcagcCACCTGCAGGAAGCTGAGACACAAAGTCAAGACACCCAGCAGCAGGAGGTGGCTGTGCTGAAGGAAGAGCTTCAAGCTCGAGGACCAGGTggtaagtacccacttggatccaaccacaaggcctaacatgtggggaccaga Alignment from Spaln_aa2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAG---GCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgaacctcagaactgtttcttcagCCACCTGCAGGAAGCTGAGACACAAAGTCAAGACACCCAGCAGCAGGAGGTGGCTGTGCTGAAGGAAGAGCTTCAAGCTCGAGGACCAGGTGgtaagtacccacttggatccaaccacaaggcctaacatgtggggaccaga Alignment from Spaln_nt2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGG---CCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgaacctcagaactgtttcttcagCCACCTGCAGGAAGCTGAGACACAAAGTCAAGACACCCAGCAGCAGGAGGTGGCTGTGCTGAAGGAAGAGCTTCAAGCTCGAGGACCAGGTGgtaagtacccacttggatccaaccacaaggcctaacatgtggggaccaga Alignment from Pairagon CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGG---CCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgaacctcagaactgtttcttcagCCACCTGCAGGAAGCTGAGACACAAAGTCAAGACACCCAGCAGCAGGAGGTGGCTGTGCTGAAGGAAGAGCTTCAAGCTCGAGGACCAGGTGgtaagtacccacttggatccaaccacaaggcctaacatgtggggaccaga Alignment from Exonerate_protein2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAG---GCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgaacctcagaactgtttcttcagCCACCTGCAGGAAGCTGAGACACAAAGTCAAGACACCCAGCAGCAGGAGGTGGCTGTGCTGAAGGAAGAGCTTCAAGCTCGAGGACCAGGTGgtaagtacccacttggatccaaccacaaggcctaacatgtggggaccaga Alignment from Exonerate_coding2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAG---GCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgaacctcagaactgtttcttcagCCACCTGCAGGAAGCTGAGACACAAAGTCAAGACACCCAGCAGCAGGAGGTGGCTGTGCTGAAGGAAGAGCTTCAAGCTCGAGGACCAGGTGgtaagtacccacttggatccaaccacaaggcctaacatgtggggaccaga Alignment from GeneWise CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAG---GCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaatgtatgagccctcctgggtgaacctcagaactgtttcttcagCCACCTGCAGGAAGCTGAGACACAAAGTCAAGACACCCAGCAGCAGGAGGTGGCTGTGCTGAAGGAAGAGCTTCAAGCTCGAGGACCAGGTGgtaagtacccacttggatccaaccacaaggcctaacatgtggggaccaga #### Cdc42bpg_ID1591_21 --> 2 - 0 Original Alignment atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTG-TCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCT-CTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from CESAR atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Spaln_aa2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Spaln_nt2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Pairagon ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Exonerate_protein2genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Exonerate_coding2genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from GeneWise ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca #### Cdc42bpg_ID1602_32 --> 0 - 1 Original Alignment GTGAGACCCCTGAATCCAGAAGGC-TCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg tggttgtcaaattagtacattgagtggagatgcttacctacgctccacagGTGAGACCCCTCAATCCAGAAGGCCTCATTAT-CCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAagtgagtgtacacaatgccaactggctgttatagctataagtgaacagcta Alignment from CESAR GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg tggttgtcaaattagtacattgagtggagatgcttacctacgctccacagGTGAGACCCCTCAATCCAGAAGGCCTCATTATCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAagtgagtgtacacaatgccaactggctgttatagctataagtgaacagcta Alignment from Spaln_aa2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattagtacattgagtggagatgcttacctacgctccacagGTGAGACCCCTCAATCCAGAAGGCCTCATTATCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAAgtgagtgtacacaatgccaactggctgttatagctataagtgaacagcta Alignment from Spaln_nt2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattagtacattgagtggagatgcttacctacgctccacagGTGAGACCCCTCAATCCAGAAGGCCTCATTATCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAAgtgagtgtacacaatgccaactggctgttatagctataagtgaacagcta Alignment from Pairagon GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattagtacattgagtggagatgcttacctacgctccacagGTGAGACCCCTCAATCCAGAAGGCCTCATTATCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAAgtgagtgtacacaatgccaactggctgttatagctataagtgaacagcta Alignment from Exonerate_protein2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattagtacattgagtggagatgcttacctacgctccacagGTGAGACCCCTCAATCCAGAAGGCCTCATTATCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAAgtgagtgtacacaatgccaactggctgttatagctataagtgaacagcta Alignment from Exonerate_coding2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattagtacattgagtggagatgcttacctacgctccacagGTGAGACCCCTCAATCCAGAAGGCCTCATTATCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAAgtgagtgtacacaatgccaactggctgttatagctataagtgaacagcta Alignment from GeneWise GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattagtacattgagtggagatgcttacctacgctccacagGTGAGACCCCTCAATCCAGAAGGCCTCATTATCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAAgtgagtgtacacaatgccaactggctgttatagctataagtgaacagcta #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTG-CACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG caccaataactaattgtcagctatttatctgatgttttgtgttgttttaggGAGATGCTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCGACCAACTTAATTCACCTGGTTCCATGTGG-GCATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaaccctggagcaggagatcactagacctgtcacaaagcttcaatcatg Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG caccaataactaattgtcagctatttatctgatgttttgtgttgttttaggGAGATGCTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCGACCAACTTAATTCACCTGGTTCCATGTGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaaccctggagcaggagatcactagacctgtcacaaagcttcaatcatg Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG caccaataactaattgtcagctatttatctgatgttttgtgttgttttagGGAGATGCTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCGACCAACTTAATTCACCTGGTTCCATGTGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaaccctggagcaggagatcactagacctgtcacaaagcttcaatcatg Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG caccaataactaattgtcagctatttatctgatgttttgtgttgttttagGGAGATGCTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCGACCAACTTAATTCACCTGGTTCCATGTGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaaccctggagcaggagatcactagacctgtcacaaagcttcaatcatg Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGG-TGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG caccaataactaattgtcagctatttatctgatgttttgtgttgttttagGGAGATGCTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCGACCAACTTAATTCACCTGGTTCCATGTGGG-CATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaaccctggagcaggagatcactagacctgtcacaaagcttcaatcatg Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG caccaataactaattgtcagctatttatctgatgttttgtgttgttttagGGAGATGCTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCGACCAACTTAATTCACCTGGTTCCATGTGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaaccctggagcaggagatcactagacctgtcacaaagcttcaatcatg Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG caccaataactaattgtcagctatttatctgatgttttgtgttgttttagGGAGATGCTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCGACCAACTTAATTCACCTGGTTCCATGTGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaaccctggagcaggagatcactagacctgtcacaaagcttcaatcatg Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG caccaataactaattgtcagctatttatctgatgttttgtgttgttttagGGAGATGCTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCGACCAACTTAATTCACCTGGTTCCATGTGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaaccctggagcaggagatcactagacctgtcacaaagcttcaatcatg #### Cep78_ID3982_4 --> 2 - 0 Original Alignment ttATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGT-CATATGGCCAAGATCTTAAAG tgtcggcttgagacaaaggttgacaacttcacactctctttccttgccagttATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAATTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCCATATGG-CAAGATCATAAAAgtaagaaatgttctaattcagtgttactgcagttcatgtactgacaagac Alignment from CESAR ttATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtcggcttgagacaaaggttgacaacttcacactctctttccttgccagttATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAATTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCCATATGGCAAGATCATAAAAgtaagaaatgttctaattcagtgttactgcagttcatgtactgacaagac Alignment from Spaln_aa2Genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtcggcttgagacaaaggttgacaacttcacactctctttccttgccagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAATTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCCATATGGCAAGATCATAAAAgtaagaaatgttctaattcagtgttactgcagttcatgtactgacaagac Alignment from Spaln_nt2Genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTC-ATATGGCCAAGATCTTAAAG tgtcggcttgagacaaaggttgacaacttcacactctctttccttgccagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAATTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCCATATGG-CAAGATCATAAAAgtaagaaatgttctaattcagtgttactgcagttcatgtactgacaagac Alignment from Pairagon TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGT-CATATGGCCAAGATCTTAAAG tgtcggcttgagacaaaggttgacaacttcacactctctttccttgccagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAATTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCCATATGG-CAAGATCATAAAAgtaagaaatgttctaattcagtgttactgcagttcatgtactgacaagac Alignment from Exonerate_protein2genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtcggcttgagacaaaggttgacaacttcacactctctttccttgccagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAATTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCCATATGGCAAGATCATAAAAgtaagaaatgttctaattcagtgttactgcagttcatgtactgacaagac Alignment from Exonerate_coding2genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtcggcttgagacaaaggttgacaacttcacactctctttccttgccagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAATTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCCATATGGCAAGATCATAAAAgtaagaaatgttctaattcagtgttactgcagttcatgtactgacaagac Alignment from GeneWise TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtcggcttgagacaaaggttgacaacttcacactctctttccttgccagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAATTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCCATATGGCAAGATCATAAAAgtaagaaatgttctaattcagtgttactgcagttcatgtactgacaagac #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCCTGGTGCACC-GTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCCTGGTGCACCGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCCTGGTGCACCGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCCTGGTGCACCGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Pairagon GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCCTGGTGCAC-CGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCCTGGTGCACCGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCCTGGTGCACCGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCCTGGTGCACCGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt #### Chuk_ID8920_8 --> 1 - 2 Original Alignment gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGA-GAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag ggggtatggttcttggatgcattacgctaccctacctcttctcttcctaggCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGACGAAGTTCGGT-TAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from CESAR gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag ggggtatggttcttggatgcattacgctaccctacctcttctcttcctaggCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGACGAAGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Spaln_aa2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGACGAAGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Spaln_nt2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGACGAAGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Pairagon GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGA-GAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGACGAAGTTCGG-TTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Exonerate_protein2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGACGAAGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Exonerate_coding2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGACGAAGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from GeneWise GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGACGAAGTTCGGTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGG-CCTTTTTTGCATCATCTGCAGCCATTTACCtg ttttcaaaactctcaactttatagctccactgcaaggttccatttgttagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTT-TTTGCATCATCTACAGCCATTTACCtggtatcacagtgctgttcatggttgggggaaactcccagttaaatgagata Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttttcaaaactctcaactttatagctccactgcaaggttccatttgttagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTGCATCATCTACAGCCATTTACCtggtatcacagtgctgttcatggttgggggaaactcccagttaaatgagata Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaactctcaactttatagctccactgcaaggttccatttgttagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTGCATCATCTACAGCCATTTACCTGgtatcacagtgctgttcatggttgggggaaactcccagttaaatgagata Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaactctcaactttatagctccactgcaaggttccatttgttagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTGCATCATCTACAGCCATTTACCTGgtatcacagtgctgttcatggttgggggaaactcccagttaaatgagata Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaactctcaactttatagctccactgcaaggttccatttgttagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTGCATCATCTACAGCCATTTACCTGgtatcacagtgctgttcatggttgggggaaactcccagttaaatgagata Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaactctcaactttatagctccactgcaaggttccatttgttagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTGCATCATCTACAGCCATTTACCTGgtatcacagtgctgttcatggttgggggaaactcccagttaaatgagata Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaactctcaactttatagctccactgcaaggttccatttgttagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTGCATCATCTACAGCCATTTACCTGgtatcacagtgctgttcatggttgggggaaactcccagttaaatgagata Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaactctcaactttatagctccactgcaaggttccatttgttagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTGCATCATCTACAGCCATTTACCTGgtatcacagtgctgttcatggttgggggaaactcccagttaaatgagata #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGA-GGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa cattcacgtcctgcctaatgctgtttctaatgagctctttcctgttgcagccACAAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCAGGACCACCAGCTCCTCGACGGGCCTC-TGGGGTTTCAACAGCCTCCTCTACATATGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGagtctggatcatagtcattagcatgtttggccagacacaagtgaaactact Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa cattcacgtcctgcctaatgctgtttctaatgagctctttcctgttgcagccACAAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCAGGACCACCAGCTCCTCGACGGGCCTCTGGGGTTTCAACAGCCTCCTCTACATATGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGagtctggatcatagtcattagcatgtttggccagacacaagtgaaactact Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcacgtcctgcctaatgctgtttctaatgagctctttcctgttgcagCCACAAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCAGGACCACCAGCTCCTCGACGGGCCTCTGGGGTTTCAACAGCCTCCTCTACATATGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtctggatcatagtcattagcatgtttggccagacacaagtgaaactact Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcacgtcctgcctaatgctgtttctaatgagctctttcctgttgcagCCACAAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCAGGACCACCAGCTCCTCGACGGGCCTCTGGGGTTTCAACAGCCTCCTCTACATATGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtctggatcatagtcattagcatgtttggccagacacaagtgaaactact Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcacgtcctgcctaatgctgtttctaatgagctctttcctgttgcagCCACAAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCAGGACCACCAGCTCCTCGACGGGCCTCTGGGGTTTCAACAGCCTCCTCTACATATGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtctggatcatagtcattagcatgtttggccagacacaagtgaaactact Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcacgtcctgcctaatgctgtttctaatgagctctttcctgttgcagCCACAAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCAGGACCACCAGCTCCTCGACGGGCCTCTGGGGTTTCAACAGCCTCCTCTACATATGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtctggatcatagtcattagcatgtttggccagacacaagtgaaactact Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcacgtcctgcctaatgctgtttctaatgagctctttcctgttgcagCCACAAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCAGGACCACCAGCTCCTCGACGGGCCTCTGGGGTTTCAACAGCCTCCTCTACATATGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtctggatcatagtcattagcatgtttggccagacacaagtgaaactact Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcacgtcctgcctaatgctgtttctaatgagctctttcctgttgcagCCACAAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCAGGACCACCAGCTCCTCGACGGGCCTCTGGGGTTTCAACAGCCTCCTCTACATATGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtctggatcatagtcattagcatgtttggccagacacaagtgaaactact #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCT-CCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagatagggctcaatgactctaagtactattttccttcccacctcaggaAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCCAAGTCCTT-AGGGCCATTAGCCATCAGTGGTGAAGGGTTGCTACTGTCT---------GGAGAGCTGAGCCAGCATATTCTCAACTATATGTCAagtaggtaggcaagtgtacccacctcccaaggatccaggggttaccttttt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagatagggctcaatgactctaagtactattttccttcccacctcaggaAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCCAAGTCCTTAGGGCCATTAGCCATCAGTGGTGAAGGGTTGCTACTGTCT---------GGAGAGCTGAGCCAGCATATTCTCAACTATATGTCAagtaggtaggcaagtgtacccacctcccaaggatccaggggttaccttttt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagatagggctcaatgactctaagtactattttccttcccacctcagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCCAAGTCCTTAGGGCCATTAGCCATCAGTGGTGAAGGGTTGCTACTGTCT---------GGAGAGCTGAGCCAGCATATTCTCAACTATATGTCAAgtaggtaggcaagtgtacccacctcccaaggatccaggggttaccttttt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagatagggctcaatgactctaagtactattttccttcccacctcagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCCAAGTCCTTAGGGCCATTAGCCATCAGTGGTGAAGGGTTGCTACTGTC---------TGGAGAGCTGAGCCAGCATATTCTCAACTATATGTCAAgtaggtaggcaagtgtacccacctcccaaggatccaggggttaccttttt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagatagggctcaatgactctaagtactattttccttcccacctcagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCCAAGTCCTTAGGGCCATTAGCCATCAGTGGTGAAGGGTTGCTACTGTC---------TGGAGAGCTGAGCCAGCATATTCTCAACTATATGTCAAgtaggtaggcaagtgtacccacctcccaaggatccaggggttaccttttt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagatagggctcaatgactctaagtactattttccttcccacctcagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCCAAGTCCTTAGGGCCATTAGCCATCAGTGGTGAAGGGTTGCTACTGTCT---------GGAGAGCTGAGCCAGCATATTCTCAACTATATGTCAAgtaggtaggcaagtgtacccacctcccaaggatccaggggttaccttttt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagatagggctcaatgactctaagtactattttccttcccacctcagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCCAAGTCCTTAGGGCCATTAGCCATCAGTGGTGAAGGGTTGCTACTGTCT---------GGAGAGCTGAGCCAGCATATTCTCAACTATATGTCAAgtaggtaggcaagtgtacccacctcccaaggatccaggggttaccttttt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagatagggctcaatgactctaagtactattttccttcccacctcagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCCAAGTCCTTAGGGCCATTAGCCATCAGTGGTGAAGGGTTGCTACTGTCT---------GGAGAGCTGAGCCAGCATATTCTCAACTATATGTCAAgtaggtaggcaagtgtacccacctcccaaggatccaggggttaccttttt #### Col17a1_ID10287_35 --> 2 - 1 Original Alignment gtCCAGCTGGCCCTGCT-GGTCTCCCAGGACAACAAg tctaatcatggaaaagagcgaatacatacctctccttggctcccttccaggtCCGGCTAGCCCTGGTCGGTC-ACCAGGTGAACAAggtaagtatcagcctgactgatgcagtgtcaggctctgaggattgaatgca Alignment from CESAR gtCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAg tctaatcatggaaaagagcgaatacatacctctccttggctcccttccaggtCCGGCTAGCCCTGGTCGGTCACCAGGTGAACAAggtaagtatcagcctgactgatgcagtgtcaggctctgaggattgaatgca Alignment from Spaln_aa2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcatggaaaagagcgaatacatacctctccttggctcccttccagGTCCGGCTAGCCCTGGTCGGTCACCAGGTGAACAAGgtaagtatcagcctgactgatgcagtgtcaggctctgaggattgaatgca Alignment from Spaln_nt2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcatggaaaagagcgaatacatacctctccttggctcccttccagGTCCGGCTAGCCCTGGTCGGTCACCAGGTGAACAAGgtaagtatcagcctgactgatgcagtgtcaggctctgaggattgaatgca Alignment from Pairagon GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcatggaaaagagcgaatacatacctctccttggctcccttccagGTCCGGCTAGCCCTGGTCGGTCACCAGGTGAACAAGgtaagtatcagcctgactgatgcagtgtcaggctctgaggattgaatgca Alignment from Exonerate_protein2genome tctaatcatggaaaagagcgaatacatacctctccttggctcccttccaggtccggctagccctggtcggtcaccaggtgaacaaggtaagtatcagcctgactgatgcagtgtcaggctctgaggattgaatgca Alignment from Exonerate_coding2genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcatggaaaagagcgaatacatacctctccttggctcccttccagGTCCGGCTAGCCCTGGTCGGTCACCAGGTGAACAAGgtaagtatcagcctgactgatgcagtgtcaggctctgaggattgaatgca Alignment from GeneWise tctaatcatggaaaagagcgaatacatacctctccttggctcccttccaggtccggctagccctggtcggtcaccaggtgaacaaggtaagtatcagcctgactgatgcagtgtcaggctctgaggattgaatgca #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGT-GACGTGGGACTTCCTGGTGTCAAAg tgtaatgcaggatggggacacaggaaagattctctgtgcttcctttgtaggtGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGG-ATTGCCTGGTGTGAAAggtaagacaggtagagaaaggtgagtcaaagttgggaggctcatttaagaa Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg tgtaatgcaggatggggacacaggaaagattctctgtgcttcctttgtaggtGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGATTGCCTGGTGTGAAAggtaagacaggtagagaaaggtgagtcaaagttgggaggctcatttaagaa Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtaatgcaggatggggacacaggaaagattctctgtgcttcctttgtagGTGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGATTGCCTGGTGTGAAAGgtaagacaggtagagaaaggtgagtcaaagttgggaggctcatttaagaa Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtaatgcaggatggggacacaggaaagattctctgtgcttcctttgtagGTGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGATTGCCTGGTGTGAAAGgtaagacaggtagagaaaggtgagtcaaagttgggaggctcatttaagaa Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTT------------------CCTGGTGTCAAAG tgtaatgcaggatggggacacaggaaagattctctgtgcttcctttgtagGTGCTGTGGGAACCCA------------------GGGACTTCGGGGTCGATGTGGATTGCCTGGTGTGAAAGgtaagacaggtagagaaaggtgagtcaaagttgggaggctcatttaagaa Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtaatgcaggatggggacacaggaaagattctctgtgcttcctttgtagGTGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGATTGCCTGGTGTGAAAGgtaagacaggtagagaaaggtgagtcaaagttgggaggctcatttaagaa Alignment from Exonerate_coding2genome GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAGGTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGG tgtaatgcaggatgGGGACACAGGAAAGATTCTCTGTGCTTCCTTTGTAGGTGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGATTGCCTGGTGTGAAAGGTAAGACAGGTAGAGAAAGgtgagtcaaagttgggaggctcatttaagaa Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGG tgtaatgcaggatggggacacaggaaagattctctgtgcttcctttgtagGTGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGATTGCCTGGTGTGAAAGGTAAGACAGGTAGAGAAAGgtgagtcaaagttgggaggctcatttaagaa #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCA-GAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA gtgctgtgctgattaaactcattacaaatatgacttgtaatttctttaaggaTGTGACAATGTGCTACTTATCTGGAATGTGGATGCTGCACGAAGAGCTGT-CCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAACGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtatctacaaatgagtattctgtcttttgactgttgaaattctatgtgtt Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCA-GAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA gtgctgtgctgattaaactcattacaaatatgacttgtaatttctttaaggaTGTGACAATGTGCTACTTATCTGGAATGTGGATGCTGCACGAAGAGCTG-TCCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAACGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtatctacaaatgagtattctgtcttttgacaacttttttctgatatccg Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA gtgctgtgctgattaaactcattacaaatatgacttgtaatttctttaagGATGTGACAATGTGCTACTTATCTGGAATGTGGATGCTGCACGAAGAGCTGTCCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAACGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtatctacaaatgagtattctgtcttttgactgttgaaattctatgtgtt Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCA-GAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA gtgctgtgctgattaaactcattacaaatatgacttgtaatttctttaagGATGTGACAATGTGCTACTTATCTGGAATGTGGATGCTGCACGAAGAGCTGT-CCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAACGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtatctacaaatgagtattctgtcttttgactgttgaaattctatgtgtt Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCA-GAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA gtgctgtgctgattaaactcattacaaatatgacttgtaatttctttaagGATGTGACAATGTGCTACTTATCTGGAATGTGGATGCTGCACGAAGAGCTGT-CCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAACGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtatctacaaatgagtattctgtcttttgactgttgaaattctatgtgtt Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA gtgctgtgctgattaaactcattacaaatatgacttgtaatttctttaagGATGTGACAATGTGCTACTTATCTGGAATGTGGATGCTGCACGAAGAGCTGTCCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAACGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtatctacaaatgagtattctgtcttttgactgttgaaattctatgtgtt Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA gtgctgtgctgattaaactcattacaaatatgacttgtaatttctttaagGATGTGACAATGTGCTACTTATCTGGAATGTGGATGCTGCACGAAGAGCTGTCCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAACGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtatctacaaatgagtattctgtcttttgactgttgaaattctatgtgtt Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA gtgctgtgctgattaaactcattacaaatatgacttgtaatttctttaagGATGTGACAATGTGCTACTTATCTGGAATGTGGATGCTGCACGAAGAGCTGTCCGTTTGGACAGTTTGCATCCTGACCTTGCTTATAACGTGAGCTGGAACCACATCGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtatctacaaatgagtattctgtcttttgactgttgaaattctatgtgtt #### Cpsf7_ID2863_3 --> 0 - 2 Original Alignment TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGA-GTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg ctgctaaatttgatctgtcatttgatctgatttgtgaattttcactttagTGGACTACAGATCAGCAACTGATTCAGGTTATCCACTCTATAGGCCATAT-TGACGTGGTGGAGTTGAAATTTGCAGAGAATCGGGCTAATGGCCCGTCTAAAgggtgggcgtcaaaactgtgggggaacccttgacttatcttttgagtgactt Alignment from CESAR TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg ctgctaaatttgatctgtcatttgatctgatttgtgaattttcactttagTGGACTACAGATCAGCAACTGATTCAGGTTATCCACTCTATAGGCCATATTGACGTGGTGGAGTTGAAATTTGCAGAGAATCGGGCTAATGGCCCGTCTAAAgggtgggcgtcaaaactgtgggggaacccttgacttatcttttgagtgactt Alignment from Spaln_aa2Genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgctaaatttgatctgtcatttgatctgatttgtgaattttcactttagTGGACTACAGATCAGCAACTGATTCAGGTTATCCACTCTATAGGCCATATTGACGTGGTGGAGTTGAAATTTGCAGAGAATCGGGCTAATGGCCCGTCTAAAGGgtgggcgtcaaaactgtgggggaacccttgacttatcttttgagtgactt Alignment from Spaln_nt2Genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgctaaatttgatctgtcatttgatctgatttgtgaattttcactttagTGGACTACAGATCAGCAACTGATTCAGGTTATCCACTCTATAGGCCATATTGACGTGGTGGAGTTGAAATTTGCAGAGAATCGGGCTAATGGCCCGTCTAAAGGgtgggcgtcaaaactgtgggggaacccttgacttatcttttgagtgactt Alignment from Pairagon TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgctaaatttgatctgtcatttgatctgatttgtgaattttcactttagTGGACTACAGATCAGCAACTGATTCAGGTTATCCACTCTATAGGCCATATTGACGTGGTGGAGTTGAAATTTGCAGAGAATCGGGCTAATGGCCCGTCTAAAGGgtgggcgtcaaaactgtgggggaacccttgacttatcttttgagtgactt Alignment from Exonerate_protein2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgctaaatttgatctgtcatttgatctgatttgtgaattttcactttagTGGACTACAGATCAGCAACTGATTCAGGTTATCCACTCTATAGGCCATATTGACGTGGTGGAGTTGAAATTTGCAGAGAATCGGGCTAATGGCCCGTCTAAAGGgtgggcgtcaaaactgtgggggaacccttgacttatcttttgagtgactt Alignment from Exonerate_coding2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgctaaatttgatctgtcatttgatctgatttgtgaattttcactttagTGGACTACAGATCAGCAACTGATTCAGGTTATCCACTCTATAGGCCATATTGACGTGGTGGAGTTGAAATTTGCAGAGAATCGGGCTAATGGCCCGTCTAAAGGgtgggcgtcaaaactgtgggggaacccttgacttatcttttgagtgactt Alignment from GeneWise TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgctaaatttgatctgtcatttgatctgatttgtgaattttcactttagTGGACTACAGATCAGCAACTGATTCAGGTTATCCACTCTATAGGCCATATTGACGTGGTGGAGTTGAAATTTGCAGAGAATCGGGCTAATGGCCCGTCTAAAGGgtgggcgtcaaaactgtgggggaacccttgacttatcttttgagtgactt #### Crtac1_ID8462_10 --> 2 - 0 Original Alignment ggGGCGTAGTGACCGAC-TTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatggcctgagtcttctggcttcatccccagggGGTGTGGTGACTGATCTTTG-TGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggaaacatttttgcctctgtatgagaatacacactagattccttttt Alignment from CESAR ggGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatggcctgagtcttctggcttcatccccagggGGTGTGGTGACTGATCTTTGTGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggaaacatttttgcctctgtatgagaatacacactagattccttttt Alignment from Spaln_aa2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatggcctgagtcttctggcttcatccccagGGGGTGTGGTGACTGATCTTTGTGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggaaacatttttgcctctgtatgagaatacacactagattccttttt Alignment from Spaln_nt2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatggcctgagtcttctggcttcatccccagGGGGTGTGGTGACTGATCTTTGTGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggaaacatttttgcctctgtatgagaatacacactagattccttttt Alignment from Pairagon GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatggcctgagtcttctggcttcatccccagGGGGTGTGGTGACTGATCTTTGTGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggaaacatttttgcctctgtatgagaatacacactagattccttttt Alignment from Exonerate_protein2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatggcctgagtcttctggcttcatccccagGGGGTGTGGTGACTGATCTTTGTGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggaaacatttttgcctctgtatgagaatacacactagattccttttt Alignment from Exonerate_coding2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatggcctgagtcttctggcttcatccccagGGGGTGTGGTGACTGATCTTTGTGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggaaacatttttgcctctgtatgagaatacacactagattccttttt Alignment from GeneWise GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatggcctgagtcttctggcttcatccccagGGGGTGTGGTGACTGATCTTTGTGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggaaacatttttgcctctgtatgagaatacacactagattccttttt #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTG-TGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acaggagcagacagcttcctgagtgccatgactgatctctctctgcccagatGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCTGTCTTACTACTGTGCACTAG-GCTTGGAGTGACTTGCAGGaggtaagtctaagggccaatatcatgaacaagttatgcaaacagttggttta Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTC---CTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acaggagcagacagcttcctgagtgccatgactgatctctctctgcccagatGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCTGTCTTACTACTGTGCACT---AGGCTTGGAGTGACTTGCAGGaggtaagtctaagggccaatatcatgaacaagttatgcaaacagttggttta Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggagcagacagcttcctgagtgccatgactgatctctctctgcccagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCTGTCTTACTACTGTGCACTAGGCTTGGAGTGACTTGCAGGAGgtaagtctaagggccaatatcatgaacaagttatgcaaacagttggttta Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTG-TGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggagcagacagcttcctgagtgccatgactgatctctctctgcccagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCTGTCTTACTACTGTGCACTAG-GCTTGGAGTGACTTGCAGGAGgtaagtctaagggccaatatcatgaacaagttatgcaaacagttggttta Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTC---CTACTGTGC----GCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggagcagacagcttcctgagtgccatgactgatctctctctgcccagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCTGTCTTACTACTGTGCACTAG-------GCTTGGAGTGACTTGCAGGAGgtaagtctaagggccaatatcatgaacaagttatgcaaacagttggttta Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggagcagacagcttcctgagtgccatgactgatctctctctgcccagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCTGTCTTACTACTGTGCACTAGGCTTGGAGTGACTTGCAGGAGgtaagtctaagggccaatatcatgaacaagttatgcaaacagttggttta Alignment from Exonerate_coding2genome acaggagcagacagcttcctgagtgccatgactgatctctctctgcccagatgcagatgacatgcgggtgcctggcacactcctctacacagtaactgcttgtgctgtcttactactgtgcactaggcttggagtgacttgcaggaggtaagtctaagggccaatatcatgaacaagttatgcaaacagttggttta Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggagcagacagcttcctgagtgccatgactgatctctctctgcccagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCTGTCTTACTACTGTGCACTAGGCTTGGAGTGACTTGCAGGAGgtaagtctaagggccaatatcatgaacaagttatgcaaacagttggttta #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGC-GAATGGAGTCCCGCCCATCCTCTCg ggtccacaaagacacgttcttactcccaatgttttcctattttctgctagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGACAAATGG------GTGCAGCCTCTCggtgagccaactgttatgcttgattcccgccaaaaatatacctgctgtcca Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGC-GAATGGAGTCCCGCCCATCCTCTCg ggtccacaaagacacgttcttactcccaatgttttcctattttctgctagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGACAAATGG------GTGCAGCCTCTCggtgagccaactgttatgcttgattcccgccaaaaatatacctgctgtcca Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGA ggtccacaaagacacgttcttactcccaatgttttcctattttctgctagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGACAAATGGgtgcagcctctcggtgagccaactgttatgcttgattcccgccaaaaatatacctgctgtcca Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGG-CGAATGGAGTCCCGCCCATCCTCTCG ggtccacaaagacacgttcttactcccaatgttttcctattttctgctagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGACAAATGG------GTGCAGCCTCTCGgtgagccaactgttatgcttgattcccgccaaaaatatacctgctgtcca Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGG-CGAATGGAGTCCCGCCCATCCTCTCG ggtccacaaagacacgttcttactcccaatgttttcctattttctgctagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGACAAATGG------GTGCAGCCTCTCGgtgagccaactgttatgcttgattcccgccaaaaatatacctgctgtcca Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggtccacaaagacacgttcttactcccaatgttttcctattttctgctagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGACAAATGGGTGCAGCCTCTCGGTGAGccaactgttatgcttgattcccgccaaaaatatacctgctgtcca Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCC ggtccacaaagacacgttcttactcccaatgttttcctattttctgctagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGACAAATGGGTGCAGCCtctcggtgagccaactgttatgcttgattcccgccaaaaatatacctgctgtcca Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGA ggtccacaaagacacgttcttactcccaatgttttcctattttctgctagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGACAAATGGgtgcagcctctcggtgagccaactgttatgcttgattcccgccaaaaatatacctgctgtcca #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCA-GGAAGCACACCCCGGAAG gtgcctatagctgacaaaaattaatagccttcacctgtgtctttatacagAGCGCAGAACCACGGAA-CACACCTCGGCAGgtaaagtggcccaaaatatggcctggtttctatatggtcacaatcgcgtc Alignment from CESAR AGCGCAGAGCCAGGAAGCACACCCCGGAAG gtgcctatagctgacaaaaattaatagccttcacctgtgtctttatacagAGCGCAGAACCACGGAACACACCTCGGCAGgtaaagtggcccaaaatatggcctggtttctatatggtcacaatcgcgtc Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG gtgcctatagctgacaaaaattaatagccttcacctgtgtctttatacagAGCGCAGAACCACGGAACACACCTCGGCAGgtaaagtggcccaaaatatggcctggtttctatatggtcacaatcgcgtc Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG gtgcctatagctgacaaaaattaatagccttcacctgtgtctttatacagAGCGCAGAACCACGGAACACACCTCGGCAGgtaaagtggcccaaaatatggcctggtttctatatggtcacaatcgcgtc Alignment from Pairagon AGCGCAGAGCCAGGAAGCACACCCCGGAAG gtgcctatagctgacaaaaattaatagccttcacctgtgtctttatacagAGCGCAGAACCACGGAACACACCTCGGCAGgtaaagtggcccaaaatatggcctggtttctatatggtcacaatcgcgtc Alignment from Exonerate_protein2genome gtgcctatagctgacaaaaattaatagccttcacctgtgtctttatacagagcgcagaaccacggaacacacctcggcaggtaaagtggcccaaaatatggcctggtttctatatggtcacaatcgcgtc Alignment from Exonerate_coding2genome gtgcctatagctgacaaaaattaatagccttcacctgtgtctttatacagagcgcagaaccacggaacacacctcggcaggtaaagtggcccaaaatatggcctggtttctatatggtcacaatcgcgtc Alignment from GeneWise AGCGCAGAGCCAGGAAGCACACCCCGGAAG gtgcctatagctgacaaaaattaatagccttcacctgtgtctttatacagAGCGCAGAACCACGGAACACACCTCGGCAGgtaaagtggcccaaaatatggcctggtttctatatggtcacaatcgcgtc #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGAC-GACGTGGTGGCTACGAAGGCGCTCg tctcagtcatatccctcagctctctctattttcttgtttgttaatttcagaGGTCATGATGTGGCACACTCCATGGCTGATCCTGGGGATGATGTGATGACCCAGTGCATTGCAAATGATTTATCCCTACTGGGGAGTGAGGCCTATTTAGTAGTTACTGGCCGAAGTGGGGCAGGGCCAGTGTGGTTCTTGGATCGATGTGGTTG-TACAAAGGCACTGggtatgttcttgttcattggcacatatacaatcacaggttggatatggagc Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg tctcagtcatatccctcagctctctctattttcttgtttgttaatttcagaGGTCATGATGTGGCACACTCCATGGCTGATCCTGGGGATGATGTGATGACCCAGTGCATTGCAAATGATTTATCCCTACTGGGGAGTGAGGCCTATTTAGTAGTTACTGGCCGAAGTGGGGCAGGGCCAGTGTGGTTCTTGGATCGATGTGGTTGTACAAAGGCACTGggtatgttcttgttcattggcacatatacaatcacaggttggatatggagc Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG tctcagtcatatccctcagctctctctattttcttgtttgttaatttcagAGGTCATGATGTGGCACACTCCATGGCTGATCCTGGGGATGATGTGATGACCCAGTGCATTGCAAATGATTTATCCCTACTGGGGAGTGAGGCCTATTTAGTAGTTACTGGCCGAAGTGGGGCAGGGCCAGTGTGGTTCTTGGATCGATGTGGTTGTACAAAGGCACTGGgtatgttcttgttcattggcacatatacaatcacaggttggatatggagc Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGA-CGACGTGGTGGCTACGAAGGCGCTCG tctcagtcatatccctcagctctctctattttcttgtttgttaatttcagAGGTCATGATGTGGCACACTCCATGGCTGATCCTGGGGATGATGTGATGACCCAGTGCATTGCAAATGATTTATCCCTACTGGGGAGTGAGGCCTATTTAGTAGTTACTGGCCGAAGTGGGGCAGGGCCAGTGTGGTTCTTGGATCGATGTGGTTG-TACAAAGGCACTGGgtatgttcttgttcattggcacatatacaatcacaggttggatatggagc Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGA-CGACGTGGTGGCTACGAAGGCGCTCG tctcagtcatatccctcagctctctctattttcttgtttgttaatttcagAGGTCATGATGTGGCACACTCCATGGCTGATCCTGGGGATGATGTGATGACCCAGTGCATTGCAAATGATTTATCCCTACTGGGGAGTGAGGCCTATTTAGTAGTTACTGGCCGAAGTGGGGCAGGGCCAGTGTGGTTCTTGGATCGATGTGGTTG-TACAAAGGCACTGGgtatgttcttgttcattggcacatatacaatcacaggttggatatggagc Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG tctcagtcatatccctcagctctctctattttcttgtttgttaatttcagAGGTCATGATGTGGCACACTCCATGGCTGATCCTGGGGATGATGTGATGACCCAGTGCATTGCAAATGATTTATCCCTACTGGGGAGTGAGGCCTATTTAGTAGTTACTGGCCGAAGTGGGGCAGGGCCAGTGTGGTTCTTGGATCGATGTGGTTGTACAAAGGCACTGGgtatgttcttgttcattggcacatatacaatcacaggttggatatggagc Alignment from Exonerate_coding2genome CCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCACGGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG TCTCAGTCATATCCCTCAGCTCTCTCTATTTTCTTGTTTGTTAATTTCAGAGGTCATGATGTGGCACACTCCATGGCTGATCCTGGGGATGATGTGATGACCCAGTGCATTGCAAATGATTTATCCCTACTGGGGAGTGAGGCCTATTTAGTAGTTACTGGCCGAAGTGGGGCAGGGCCAGTGTGGTTCTTGGATCGATGTGGTTGTACAAAGGCACTGGgtatgttcttgttcattggcacatatacaatcacaggttggatatggagc Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG tctcagtcatatccctcagctctctctattttcttgtttgttaatttcagAGGTCATGATGTGGCACACTCCATGGCTGATCCTGGGGATGATGTGATGACCCAGTGCATTGCAAATGATTTATCCCTACTGGGGAGTGAGGCCTATTTAGTAGTTACTGGCCGAAGTGGGGCAGGGCCAGTGTGGTTCTTGGATCGATGTGGTTGTACAAAGGCACTGGgtatgttcttgttcattggcacatatacaatcacaggttggatatggagc #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCC-GCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccacccactaccaagacactgacatccttctttccttcagccCCAACCACTCCGTATGTTGGCTCTGCCCTCAACCTGATCTTTGATCCTTGGACCCGCATGCTGACCTGGGCTTGTGATGCTGCTCGCAGACAATG-CATGGTGATGTCATGCACAGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTTTCAgtgagaaagtaagatttgatactgggcctaataatcccatgaggcccaat Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccacccactaccaagacactgacatccttctttccttcagccCCAACCACTCCGTATGTTGGCTCTGCCCTCAACCTGATCTTTGATCCTTGGACCCGCATGCTGACCTGGGCTTGTGATGCTGCTCGCAGACAATGCATGGTGATGTCATGCACAGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTTTCAgtgagaaagtaagatttgatactgggcctaataatcccatgaggcccaat Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccacccactaccaagacactgacatccttctttccttcagCCCCAACCACTCCGTATGTTGGCTCTGCCCTCAACCTGATCTTTGATCCTTGGACCCGCATGCTGACCTGGGCTTGTGATGCTGCTCGCAGACAATGCATGGTGATGTCATGCACAGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTTTCAgtgagaaagtaagatttgatactgggcctaataatcccatgaggcccaat Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGC-CGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccacccactaccaagacactgacatccttctttccttcagCCCCAACCACTCCGTATGTTGGCTCTGCCCTCAACCTGATCTTTGATCCTTGGACCCGCATGCTGACCTGGGCTTGTGATGCTGCTCGCAGACAATG-CATGGTGATGTCATGCACAGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTTTCAgtgagaaagtaagatttgatactgggcctaataatcccatgaggcccaat Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGT-----------------CACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccacccactaccaagacactgacatccttctttccttcagCCCCAACCACTCCGTATGTTGGCTCTGCCCTCAACCTGATCTTTGATCCTTGGACCCGCATGCTGACCTGGGCTTGTGA-----------------TGCTGCTCGCAGACAATGCATGGTGATGTCATGCACAGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTTTCAgtgagaaagtaagatttgatactgggcctaataatcccatgaggcccaat Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccacccactaccaagacactgacatccttctttccttcagCCCCAACCACTCCGTATGTTGGCTCTGCCCTCAACCTGATCTTTGATCCTTGGACCCGCATGCTGACCTGGGCTTGTGATGCTGCTCGCAGACAATGCATGGTGATGTCATGCACAGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTTTCAgtgagaaagtaagatttgatactgggcctaataatcccatgaggcccaat Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccacccactaccaagacactgacatccttctttccttcagCCCCAACCACTCCGTATGTTGGCTCTGCCCTCAACCTGATCTTTGATCCTTGGACCCGCATGCTGACCTGGGCTTGTGATGCTGCTCGCAGACAATGCATGGTGATGTCATGCACAGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTTTCAgtgagaaagtaagatttgatactgggcctaataatcccatgaggcccaat Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccacccactaccaagacactgacatccttctttccttcagCCCCAACCACTCCGTATGTTGGCTCTGCCCTCAACCTGATCTTTGATCCTTGGACCCGCATGCTGACCTGGGCTTGTGATGCTGCTCGCAGACAATGCATGGTGATGTCATGCACAGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTTTCAgtgagaaagtaagatttgatactgggcctaataatcccatgaggcccaat #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGCTCATTC-CTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcaatgaactaagatttgactggagaaaacaaagttgtcttctttgaaagagTTTCGAAATGTTACCCTTGGCTCACTCCCTACCAT-GTTAGACAAAGATCCCCTGCCCCAGgtgagagggaaaatgttacatagggagaaagcacatttctattcattttt Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcaatgaactaagatttgactggagaaaacaaagttgtcttctttgaaagagTTTCGAAATGTTACCCTTGGCTCACTCCCTACCATGTTAGACAAAGATCCCCTGCCCCAGgtgagagggaaaatgttacatagggagaaagcacatttctattcattttt Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcaatgaactaagatttgactggagaaaacaaagttgtcttctttgaaagAGTTTCGAAATGTTACCCTTGGCTCACTCCCTACCATGTTAGACAAAGATCCCCTGCCCCAGgtgagagggaaaatgttacatagggagaaagcacatttctattcattttt Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcaatgaactaagatttgactggagaaaacaaagttgtcttctttgaaagAGTTTCGAAATGTTACCCTTGGCTCACTCCCTACCATGTTAGACAAAGATCCCCTGCCCCAGgtgagagggaaaatgttacatagggagaaagcacatttctattcattttt Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcaatgaactaagatttgactggagaaaacaaagttgtcttctttgaaagAGTTTCGAAATGTTACCCTTGGCTCACTCCCTACCATGTTAGACAAAGATCCCCTGCCCCAGgtgagagggaaaatgttacatagggagaaagcacatttctattcattttt Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcaatgaactaagatttgactggagaaaacaaagttgtcttctttgaaagAGTTTCGAAATGTTACCCTTGGCTCACTCCCTACCATGTTAGACAAAGATCCCCTGCCCCAGgtgagagggaaaatgttacatagggagaaagcacatttctattcattttt Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcaatgaactaagatttgactggagaaaacaaagttgtcttctttgaaagAGTTTCGAAATGTTACCCTTGGCTCACTCCCTACCATGTTAGACAAAGATCCCCTGCCCCAGgtgagagggaaaatgttacatagggagaaagcacatttctattcattttt Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tcaatgaactaagatttgactggagaaaacaaagttgtcttctttgaaagAGTTTCGAAATGTTACCCTTGGCTCACTCCCTACCATGTTAGACAAAGATCCCCTGCCCCAGgtgagagggaaaatgttacatagggagaaagcacatttctattcattttt #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTT-GCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagagGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTCGCTCCAC-TGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagagGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTCGCTCCACTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTCGCTCCACTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTCGCTCCACTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTCGCTCCACTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTCGCTCCACTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTCGCTCCACTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTCGCTCCACTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGG-GGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---TTGATCCGACGGAACTC-TCTTTCA---TCAGAACAGggtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATCCGACGGAACTCT---CTTTCA---TCAGAACAGggtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Spaln_aa2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATCCGACGGAACTCTCTT------TCATCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Spaln_nt2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGA-CTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGT---TGATCCGACGGAACTCT-CTTTC---ATCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Pairagon GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTG---------------------TCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGT---------------------------TGATCCGACGGAACTCTCTTTCATCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Exonerate_protein2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATCCGACGGAACTCTCTT------TCATCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Exonerate_coding2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATCCGACGGAACTCTCTT------TCATCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from GeneWise ---GGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATCCGACGGAACTCTCTTTCATCA------GAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt #### Ctsf_ID685_13 --> 2 - 0 Original Alignment gcTCTAACATTCCTTAC-TGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTAC cttaagctccggtaattccttactactctaaccacatctctttcctccaggtTCTAACATTCCCTACCTGGGCAA-CAAGAATAGCTGGGGCAGTGACTGGGGTGAGGAGgtaatcttgttaatgcatatttttgttcacagGGGTACTATTACTTATAC Alignment from CESAR gcTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTAC cttaagctccggtaattccttactactctaaccacatctctttcctccaggtTCTAACATTCCCTACCTGGGCAACAAGAATAGCTGGGGCAGTGACTGGGGTGAGGAGgtaatcttgtaagaactgctgtttccctatagGGGTACTATTACTTATAC Alignment from Spaln_aa2Genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTAC cttaagctccggtaattccttactactctaaccacatctctttcctccagGTTCTAACATTCCCTACCTGGGCAACAAGAATAGCTGGGGCAGTGACTGGGGTGAGGAGgtaatcttgttaatgcatatttttgttcacagGGGTACTATTACTTATAC Alignment from Spaln_nt2Genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGG--------------------------------AGGGTTACTACTACTTGTAC cttaagctccggtaattccttactactctaaccacatctctttcctccagGTTCTAACATTCCCTACCTGGGCAACAAGAATAGCTGGGGCAGTGACTGGGGTGAGGAGGTAATCTTGTTAATGCATATTTTTGTTCACAGGGGTACTATTACTTATAC Alignment from Pairagon GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTAC cttaagctccggtaattccttactactctaaccacatctctttcctccagGTTCTAACATTCCCTACCTGGGCAACAAGAATAGCTGGGGCAGTGACTGGGGTGAGGAGgtaatcttgttaatgcatatttttgttcacagGGGTACTATTACTTATAC Alignment from Exonerate_protein2genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTAC cttaagctccggtaattccttactactctaaccacatctctttcctccagGTTCTAACATTCCCTACCTGGGCAACAAGAATAGCTGGGGCAGTGACTGGGGTGAGGAGgtaatcttgttaatgcatatttttgttcacagGGGTACTATTACTTATAC Alignment from Exonerate_coding2genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTAC cttaagctccggtaattccttactactctaaccacatctctttcctccagGTTCTAACATTCCCTACCTGGGCAACAAGAATAGCTGGGGCAGTGACTGGGGTGAGGAGgtaatcttgttaatgcatatttttgttcacagGGGTACTATTACTTATAC Alignment from GeneWise GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACTTGTAC cttaagctccggtaattccttactactctaaccacatctctttcctccagGTTCTAACATTCCCTACCTGGGCAACAAGAATAGCTGGGGCAGTGACTGGGGTGAGGAGgtaatcttgttaatgcatatttttgttcacagGGGTACTATTACTTATAC #### Ctsw_ID1018_8 --> 2 - 0 Original Alignment caATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG tggaggtagatatgccaccctctaaaatttgctattttctccccaaacagtgATTGCACACTACCTCACTGCACATGGGCCCATCACTCGTGACCA-TAACATGAAACTACTTCTGgtattttgtccagcacaataagaggaagtggggctctggaagctctcttc Alignment from CESAR caATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG tggaggtagatatgccaccctctaaaatttgctattttctccccaaacagtgATTGCACACTACCTCACTGCACATGGGCCCATCACTCGTGACCATAACATGAAACTACTTCTGgtattttgtccagcacaataagaggaagtggggctctggaagctctcttc Alignment from Spaln_aa2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG tggaggtagatatgccaccctctaaaatttgctattttctccccaaacagTGATTGCACACTACCTCACTGCACATGGGCCCATCACTCGTGACCATAACATGAAACTACTTCTGgtattttgtccagcacaataagaggaagtggggctctggaagctctcttc Alignment from Spaln_nt2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCAC-CGTGACCATCAACATGAAACTACTCCAG tggaggtagatatgccaccctctaaaatttgctattttctccccaaacagTGATTGCACACTACCTCACTGCACATGGGCCCATCACTCGTGACCAT-AACATGAAACTACTTCTGgtattttgtccagcacaataagaggaagtggggctctggaagctctcttc Alignment from Pairagon CAATTGCCCACTACCTGGCCGTGCATGGACCTATCAC-CGTGACCATCAACATGAAACTACTCCAG tggaggtagatatgccaccctctaaaatttgctattttctccccaaacagTGATTGCACACTACCTCACTGCACATGGGCCCATCACTCGTGACCAT-AACATGAAACTACTTCTGgtattttgtccagcacaataagaggaagtggggctctggaagctctcttc Alignment from Exonerate_protein2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG tggaggtagatatgccaccctctaaaatttgctattttctccccaaacagTGATTGCACACTACCTCACTGCACATGGGCCCATCACTCGTGACCATAACATGAAACTACTTCTGgtattttgtccagcacaataagaggaagtggggctctggaagctctcttc Alignment from Exonerate_coding2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG tggaggtagatatgccaccctctaaaatttgctattttctccccaaacagTGATTGCACACTACCTCACTGCACATGGGCCCATCACTCGTGACCATAACATGAAACTACTTCTGgtattttgtccagcacaataagaggaagtggggctctggaagctctcttc Alignment from GeneWise CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG tggaggtagatatgccaccctctaaaatttgctattttctccccaaacagTGATTGCACACTACCTCACTGCACATGGGCCCATCACTCGTGACCATAACATGAAACTACTTCTGgtattttgtccagcacaataagaggaagtggggctctggaagctctcttc #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCT-GAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactggccattacctgactcaaaagatgccgctgctttgggcacacagagTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTCGAGCTTGGAG-GACACCCTTCAGTGACCTCAACagtaaaagggtttgtgtggcaagacctactatactgtcctcaggccctctt Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactggccattacctgactcaaaagatgccgctgctttgggcacacagagTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTCGAGCTTGGAGGACACCCTTCAGTGACCTCAACagtaaaagggtttgtgtggcaagacctactatactgtcctcaggccctctt Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggccattacctgactcaaaagatgccgctgctttgggcacacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTCGAGCTTGGAGGACACCCTTCAGTGACCTCAACAgtaaaagggtttgtgtggcaagacctactatactgtcctcaggccctctt Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCT-GAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggccattacctgactcaaaagatgccgctgctttgggcacacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTCGAGCTTGGAG-GACACCCTTCAGTGACCTCAACAgtaaaagggtttgtgtggcaagacctactatactgtcctcaggccctctt Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCT-GAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggccattacctgactcaaaagatgccgctgctttgggcacacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTCGAGCTTGGAG-GACACCCTTCAGTGACCTCAACAgtaaaagggtttgtgtggcaagacctactatactgtcctcaggccctctt Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggccattacctgactcaaaagatgccgctgctttgggcacacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTCGAGCTTGGAGGACACCCTTCAGTGACCTCAACAgtaaaagggtttgtgtggcaagacctactatactgtcctcaggccctctt Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggccattacctgactcaaaagatgccgctgctttgggcacacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTCGAGCTTGGAGGACACCCTTCAGTGACCTCAACAgtaaaagggtttgtgtggcaagacctactatactgtcctcaggccctctt Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggccattacctgactcaaaagatgccgctgctttgggcacacagAGTACACTCATCATCTGAGCATCTTTGCCCACAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTCGAGCTTGGAGGACACCCTTCAGTGACCTCAACAgtaaaagggtttgtgtggcaagacctactatactgtcctcaggccctctt #### Ctsw_ID1024_2 --> 0 - 1 Original Alignment GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAG-ATCCGGTTCAACCGGAGTTACTGGAACCCAGCAg gaccaggatgacagataagaaccatgagtgtcctttattgtgcttcctagGATACAGGTCCCCGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTGACCATACGGC-CAATCAGAGCTACTGGAACCCAGCAggtaataccaggcatagatgttcctggtacaacttctgttgttggctgcaa Alignment from CESAR GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAg gaccaggatgacagataagaaccatgagtgtcctttattgtgcttcctagGATACAGGTCCCCGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTGACCATACGGCCAATCAGAGCTACTGGAACCCAGCAggtaataccaggcatagatgttcctggtacaacttctgttgttggctgcaa Alignment from Spaln_aa2Genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gaccaggatgacagataagaaccatgagtgtcctttattgtgcttcctagGATACAGGTCCCCGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTGACCATACGGCCAATCAGAGCTACTGGAACCCAGCAGgtaataccaggcatagatgttcctggtacaacttctgttgttggctgcaa Alignment from Spaln_nt2Genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAG-ATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gaccaggatgacagataagaaccatgagtgtcctttattgtgcttcctagGATACAGGTCCCCGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTGACCATACGG-CCAATCAGAGCTACTGGAACCCAGCAGgtaataccaggcatagatgttcctggtacaacttctgttgttggctgcaa Alignment from Pairagon GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTT-----------CCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gaccaggatgacagataagaaccatgagtgtcctttattgtgcttcctagGATACAGGTCCCCGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTGACCATACGGC-----------CAATCAGAGCTACTGGAACCCAGCAGgtaataccaggcatagatgttcctggtacaacttctgttgttggctgcaa Alignment from Exonerate_protein2genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gaccaggatgacagataagaaccatgagtgtcctttattgtgcttcctagGATACAGGTCCCCGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTGACCATACGGCCAATCAGAGCTACTGGAACCCAGCAGgtaataccaggcatagatgttcctggtacaacttctgttgttggctgcaa Alignment from Exonerate_coding2genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gaccaggatgacagataagaaccatgagtgtcctttattgtgcttcctagGATACAGGTCCCCGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTGACCATACGGCCAATCAGAGCTACTGGAACCCAGCAGgtaataccaggcatagatgttcctggtacaacttctgttgttggctgcaa Alignment from GeneWise GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gaccaggatgacagataagaaccatgagtgtcctttattgtgcttcctagGATACAGGTCCCCGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTGACCATACGGCCAATCAGAGCTACTGGAACCCAGCAGgtaataccaggcatagatgttcctggtacaacttctgttgttggctgcaa #### Cyp17a1_ID9993_7 --> 1 - 1 Original Alignment cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATC-AATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg cttaagacttttggctaaagtaactattgcaaatccccttccattcctagtATAGGAGAGTATGCCATCCTGAAAGATACTCATGTAATCATCCAACCTGT-GGCACTGCATCATGACAAAAATGAA---TATCAGGCAGATCAGTTCATGCCTggtgagcccctctccactccatgctaacttctgtaccatgtagtttctcat Alignment from CESAR cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg cttaagacttttggctaaagtaactattgcaaatccccttccattcctagtATAGGAGAGTATGCCATCCTGAAAGATACTCATGTAATCATCCAACCTGTGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTggtgagcccctctccactccatgctaacttctgtaccatgtagtttctcat Alignment from Spaln_aa2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG cttaagacttttggctaaagtaactattgcaaatccccttccattcctagTATAGGAGAGTATGCCATCCTGAAAGATACTCATGTAATCATCCAACCTGTGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtgagcccctctccactccatgctaacttctgtaccatgtagtttctcat Alignment from Spaln_nt2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG cttaagacttttggctaaagtaactattgcaaatccccttccattcctagTATAGGAGAGTATGCCATCCTGAAAGATACTCATGTAATCATCCAACCTGTGGCACTGCATCATGACAAAAATGAAT---ATCAGGCAGATCAGTTCATGCCTGgtgagcccctctccactccatgctaacttctgtaccatgtagtttctcat Alignment from Pairagon CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG cttaagacttttggctaaagtaactattgcaaatccccttccattcctagTATAGGAGAGTATGCCATCCTGAAAGATACTCATGTAATCATCCAACCTGTGGCACTGCATCATGACAAAAATGAAT---ATCAGGCAGATCAGTTCATGCCTGgtgagcccctctccactccatgctaacttctgtaccatgtagtttctcat Alignment from Exonerate_protein2genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG cttaagacttttggctaaagtaactattgcaaatccccttccattcctagTATAGGAGAGTATGCCATCCTGAAAGATACTCATGTAATCATCCAACCTGTGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtgagcccctctccactccatgctaacttctgtaccatgtagtttctcat Alignment from Exonerate_coding2genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG cttaagacttttggctaaagtaactattgcaaatccccttccattcctagTATAGGAGAGTATGCCATCCTGAAAGATACTCATGTAATCATCCAACCTGTGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtgagcccctctccactccatgctaacttctgtaccatgtagtttctcat Alignment from GeneWise CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG cttaagacttttggctaaagtaactattgcaaatccccttccattcctagTATAGGAGAGTATGCCATCCTGAAAGATACTCATGTAATCATCCAACCTGTGGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtgagcccctctccactccatgctaacttctgtaccatgtagtttctcat #### Cyp17a1_ID9994_6 --> 0 - 2 Original Alignment GTGAAGAGGAAGATCCAAAAGGAGATTGACCAG-TATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCag attcctttgttcctcttgctaatatgtattgacactgctgtcgcccacagGTGCAGAGGAAGATCAAAAAAGAGATTGACCAGCTATGTAG-TTTCAGACAAACTCCATCCTTCAATGACCGAACACACCTTCTCACACTAGAGGCCACAATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGATCATTCCCCACAAAGCTAATATTGACTCCaggtaagtccttcttggtgaattaactacttaggtttcagctaatcagtttc Alignment from CESAR GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCag attcctttgttcctcttgctaatatgtattgacactgctgtcgcccacagGTGCAGAGGAAGATCAAAAAAGAGATTGACCAGCTATGTAGTTTCAGACAAACTCCATCCTTCAATGACCGAACACACCTTCTCACACTAGAGGCCACAATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGATCATTCCCCACAAAGCTAATATTGACTCCaggtaagtccttcttggtgaattaactacttaggtttcagctaatcagtttc Alignment from Spaln_aa2Genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgctaatatgtattgacactgctgtcgcccacagGTGCAGAGGAAGATCAAAAAAGAGATTGACCAGCTATGTAGTTTCAGACAAACTCCATCCTTCAATGACCGAACACACCTTCTCACACTAGAGGCCACAATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGATCATTCCCCACAAAGCTAATATTGACTCCAGgtaagtccttcttggtgaattaactacttaggtttcagctaatcagtttc Alignment from Spaln_nt2Genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgctaatatgtattgacactgctgtcgcccacagGTGCAGAGGAAGATCAAAAAAGAGATTGACCAGCTATGTAGTTTCAGACAAACTCCATCCTTCAATGACCGAACACACCTTCTCACACTAGAGGCCACAATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGATCATTCCCCACAAAGCTAATATTGACTCCAGgtaagtccttcttggtgaattaactacttaggtttcagctaatcagtttc Alignment from Pairagon GTGAAGAGGAAGATCCAAAAGGAGATTGACCAG-TATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgctaatatgtattgacactgctgtcgcccacagGTGCAGAGGAAGATCAAAAAAGAGATTGACCAGCTATGTA-GTTTCAGACAAACTCCATCCTTCAATGACCGAACACACCTTCTCACACTAGAGGCCACAATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGATCATTCCCCACAAAGCTAATATTGACTCCAGgtaagtccttcttggtgaattaactacttaggtttcagctaatcagtttc Alignment from Exonerate_protein2genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgctaatatgtattgacactgctgtcgcccacagGTGCAGAGGAAGATCAAAAAAGAGATTGACCAGCTATGTAGTTTCAGACAAACTCCATCCTTCAATGACCGAACACACCTTCTCACACTAGAGGCCACAATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGATCATTCCCCACAAAGCTAATATTGACTCCAGgtaagtccttcttggtgaattaactacttaggtttcagctaatcagtttc Alignment from Exonerate_coding2genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgctaatatgtattgacactgctgtcgcccacagGTGCAGAGGAAGATCAAAAAAGAGATTGACCAGCTATGTAGTTTCAGACAAACTCCATCCTTCAATGACCGAACACACCTTCTCACACTAGAGGCCACAATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGATCATTCCCCACAAAGCTAATATTGACTCCAGgtaagtccttcttggtgaattaactacttaggtttcagctaatcagtttc Alignment from GeneWise GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgctaatatgtattgacactgctgtcgcccacagGTGCAGAGGAAGATCAAAAAAGAGATTGACCAGCTATGTAGTTTCAGACAAACTCCATCCTTCAATGACCGAACACACCTTCTCACACTAGAGGCCACAATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGATCATTCCCCACAAAGCTAATATTGACTCCAGgtaagtccttcttggtgaattaactacttaggtttcagctaatcagtttc #### Cyp17a1_ID9997_3 --> 2 - 0 Original Alignment taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCT-ACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGC---------------------------GATCTGGTGGACATATTCCCGTGGTTGAAG cctcaagctactcctgtgctctattgacccttcatttttttttcttttagtaTGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTCACACTCA-TTTCAAGTCAGCGATTAACATCATCTGTACCATATGTTTTAACATCTCTTTCGAGAACATGGATCCAATACTGACTATGAGA---------ATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgttagtgggaatttttatgaaagagtgactctgcttcccatcttggcacc Alignment from CESAR taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGC---------------------------GATCTGGTGGACATATTCCCGTGGTTGAAG cctcaagctactcctgtgctctattgacccttcatttttttttcttttagtaTGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTCACACTCATTTCAAGTCAGCGATTAACATCATCTGTACCATATGTTTTAACATCTCTTTCGAGAACATGGATCCAATACTGACTATGAGA---------ATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgttagtgggaatttttatgaaagagtgactctgcttcccatcttggcacc Alignment from Spaln_aa2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG--- cctcaagctactcctgtgctctattgacccttcatttttttttcttttagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTCACACTCATTTCAAGTCAGCGATTAACATCATCTGTACCATATGTTTTAACATCTCTTTCGAGAACATGGATCCAATACTGACTATGAGA---------ATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGgtggagataatcccatggttaaaggttagtgggaatttttatgaaagagtgactctgcttcccatcttggcacc Alignment from Spaln_nt2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCT-ACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGG--GTATTGTG-------GATGTCCTGGGCCACAGC---------GATCTGGTGGACATATTCCCGTGGTTGAAG cctcaagctactcctgtgctctattgacccttcatttttttttcttttagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTCACACTCAT-TTCAAGTCAGCGATTAACATCATCTGTACCATATGTTTTAACATCTCTTTCGAGAACATGGATCCAATACTGACTATGAGAATGGAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgttagtgggaatttttatgaaagagtgactctgcttcccatcttggcacc Alignment from Pairagon TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCT-ACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTA------------CCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAG---------------------------CGATCTGGTGGACATATTCCCGTGGTTGAAG cctcaagctactcctgtgctctattgacccttcatttttttttcttttagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTCACACTCAT-TTCAAGTCAGCGATTAACATCATCTGTACCATATGTTTTAACATCTCTTTCGAGAACATGGATCCAATACTGACTATGAGAATGGAATCC---------------------ATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgttagtgggaatttttatgaaagagtgactctgcttcccatcttggcacc Alignment from Exonerate_protein2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTG cctcaagctactcctgtgctctattgacccttcatttttttttcttttagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTCACACTCATTTCAAGTCAGCGATTAACATCATCTGTACCATATGTTTTAACATCTCTTTCGAGAACATGGATCCAATACTGACTATGAGAATG---------GAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGgtttgatctggtggagataatcccatggttaaaggttagtgggaatttttatgaaagagtgactctgcttcccatcttggcacc Alignment from Exonerate_coding2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTG cctcaagctactcctgtgctctattgacccttcatttttttttcttttagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTCACACTCATTTCAAGTCAGCGATTAACATCATCTGTACCATATGTTTTAACATCTCTTTCGAGAACATGGATCCAATACTGACTATGAGAATG---------GAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGgtttgatctggtggagataatcccatggttaaaggttagtgggaatttttatgaaagagtgactctgcttcccatcttggcacc Alignment from GeneWise TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAGATT cctcaagctactcctgtgctctattgacccttcatttttttttcttttagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTCACACTCATTTCAAGTCAGCGATTAACATCATCTGTACCATATGTTTTAACATCTCTTTCGAGAACATGGATCCAATACTGACTATGAGAATG---------GAATCCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTTAAGAACACCCCATGGTTTGATCTGgtggagataatcccatggttaaaggttagtgggaatttttatgaaagagtgactctgcttcccatcttggcacc #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATG-ACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaagtataggccgataaacacagccttcatcttctgcccacagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCCTACCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCTTTTGAGGAAATGCACCCGCA-TCTCTTCTCCCTTCCCATTGATGTCCCATTCAGTGGTCTGTACCGTgtatgacattgcctatcacattctgttccagGGTGTT---TCTCGTAATA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaagtataggccgataaacacagccttcatcttctgcccacagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCCTACCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCTTTTGAGGAAATGCACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGTGGTCTGTACCGTgtatgacatgacattcttctgctctgcccagGGTGTT---TCTCGTAATA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaagtataggccgataaacacagccttcatcttctgcccacagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCCTACCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCTTTTGAGGAAATGCACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGTGGTCTGTACCGTgtatgacattgcctatcacattctgttccagGGTGTT---TCTCGTAATA Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACC tcgagcacaagtataggccgataaacacagccttcatcttctgcccacagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCCTACCCTGAGGTGAAGCGCCTTATGTT---CATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCTTTTGAGGAAATGCACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGTGGTCTGTACCGTGTATGACATTGCCTATCACATTCTGTTCCAGGGTGT---TTCTCGTAATA Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATG-ACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGGGGCGTGAAGGCGCGGAACCTT-------------------------------------------------A tcgagcacaagtataggccgataaacacagccttcatcttctgcccacagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCCTACCCTGAGGTGAAGCGCCTTATGTT---CATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCTTTTGAGGAAATGCACCCGC-ATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGTGGTCTGTACCG---------------------TGTATGACATTGCCTATCACATTCTGTTCCAGGGTGTTTCTCGTAATATAA Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaagtataggccgataaacacagccttcatcttctgcccacagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCCTACCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCTTTTGAGGAAATGCACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGTGGTCTGTACCGTgtatgacattgcctatcacattctgttccagGGTGTT---TCTCGTAATA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaagtataggccgataaacacagccttcatcttctgcccacagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCCTACCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCTTTTGAGGAAATGCACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGTGGTCTGTACCGTgtatgacattgcctatcacattctgttccagGGTGTT---TCTCGTAATA Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaagtataggccgataaacacagccttcatcttctgcccacagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCCTACCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCTTTTGAGGAAATGCACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGTGGTCTGTACCGTgtatgacattgcctatcacattctgttccagGGTGTT---TCTCGTAATA #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAA-GGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagcatagcatggaatctttttgctgcacctgtgatcttctctttgtcaggaCTTACATTCAGTAAACGGAAATGTAT-GAGAAACATGAAGCACTACTCAGTCATGCCATTGCGTAATTTAGGTATGAGGAAGAGGAGCATTAAGGGGCAGATTCAAGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAACtgtgagttaggtctatgggtaattctttacttattaaaagcgattgtcaca Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagcatagcatggaatctttttgctgcacctgtgatcttctctttgtcaggaCTTACATTCAGTAAACGGAAATGTATGAGAAACATGAAGCACTACTCAGTCATGCCATTGCGTAATTTAGGTATGAGGAAGAGGAGCATTAAGGGGCAGATTCAAGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAACtgtgagttaggtctatgggtaattctttacttattaaaagcgattgtcaca Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcatagcatggaatctttttgctgcacctgtgatcttctctttgtcagGACTTACATTCAGTAAACGGAAATGTATGAGAAACATGAAGCACTACTCAGTCATGCCATTGCGTAATTTAGGTATGAGGAAGAGGAGCATTAAGGGGCAGATTCAAGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAACTgtgagttaggtctatgggtaattctttacttattaaaagcgattgtcaca Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAA-GGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcatagcatggaatctttttgctgcacctgtgatcttctctttgtcagGACTTACATTCAGTAAACGGAAATGTAT-GAGAAACATGAAGCACTACTCAGTCATGCCATTGCGTAATTTAGGTATGAGGAAGAGGAGCATTAAGGGGCAGATTCAAGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAACTgtgagttaggtctatgggtaattctttacttattaaaagcgattgtcaca Alignment from Pairagon GCCTTGCATTTAGTAAA-GGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcatagcatggaatctttttgctgcacctgtgatcttctctttgtcagGACTTACATTCAGTAAACGGAAATGTAT-GAGAAACATGAAGCACTACTCAGTCATGCCATTGCGTAATTTAGGTATGAGGAAGAGGAGCATTAAGGGGCAGATTCAAGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAACTgtgagttaggtctatgggtaattctttacttattaaaagcgattgtcaca Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcatagcatggaatctttttgctgcacctgtgatcttctctttgtcagGACTTACATTCAGTAAACGGAAATGTATGAGAAACATGAAGCACTACTCAGTCATGCCATTGCGTAATTTAGGTATGAGGAAGAGGAGCATTAAGGGGCAGATTCAAGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAACTgtgagttaggtctatgggtaattctttacttattaaaagcgattgtcaca Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcatagcatggaatctttttgctgcacctgtgatcttctctttgtcagGACTTACATTCAGTAAACGGAAATGTATGAGAAACATGAAGCACTACTCAGTCATGCCATTGCGTAATTTAGGTATGAGGAAGAGGAGCATTAAGGGGCAGATTCAAGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAACTgtgagttaggtctatgggtaattctttacttattaaaagcgattgtcaca Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcatagcatggaatctttttgctgcacctgtgatcttctctttgtcagGACTTACATTCAGTAAACGGAAATGTATGAGAAACATGAAGCACTACTCAGTCATGCCATTGCGTAATTTAGGTATGAGGAAGAGGAGCATTAAGGGGCAGATTCAAGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAACTgtgagttaggtctatgggtaattctttacttattaaaagcgattgtcaca #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGA-AGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgagaatcaggatgggtgacttcatatttttctttttcccccctccctagTTATCACGAGTTTATGGCCCACTTTATACTTTATATCTGGGGAGGAAGCCAACTGTTGTTTTACATGGATATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGACAGGGGTA-TCTCCCATTTTTTGATAAAGCTACCAATGGAATGggtaatatctggggtgtgtagtatgcatggttgcaatacagtgatatccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgagaatcaggatgggtgacttcatatttttctttttcccccctccctagTTATCACGAGTTTATGGCCCACTTTATACTTTATATCTGGGGAGGAAGCCAACTGTTGTTTTACATGGATATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGACAGGGGTATCTCCCATTTTTTGATAAAGCTACCAATGGAATGggtaatatctggggtgtgtagtatgcatggttgcaatacagtgatatccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaatcaggatgggtgacttcatatttttctttttcccccctccctagTTATCACGAGTTTATGGCCCACTTTATACTTTATATCTGGGGAGGAAGCCAACTGTTGTTTTACATGGATATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGACAGGGGTATCTCCCATTTTTTGATAAAGCTACCAATGGAATGGgtaatatctggggtgtgtagtatgcatggttgcaatacagtgatatccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGA---AGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaatcaggatgggtgacttcatatttttctttttcccccctccctagTTATCACGAGTTTATGGCCCACTTTATACTTTATATCTGGGGAGGAAGCCAACTGTTGTTTTACATGGATATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGACAGGGGTATCTCCCATTTTTTGATAAAGCTACCAATGGAATGGgtaatatctggggtgtgtagtatgcatggttgcaatacagtgatatccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaatcaggatgggtgacttcatatttttctttttcccccctccctagTTATCACGAGTTTATGGCCCACTTTATACTTTATATCTGGGGAGGAAGCCAACTGTTGTTTTACATGGATATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGACAGGGGTATCTCCCATTTTTTGATAAAGCTACCAATGGAATGGgtaatatctggggtgtgtagtatgcatggttgcaatacagtgatatccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaatcaggatgggtgacttcatatttttctttttcccccctccctagTTATCACGAGTTTATGGCCCACTTTATACTTTATATCTGGGGAGGAAGCCAACTGTTGTTTTACATGGATATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGACAGGGGTATCTCCCATTTTTTGATAAAGCTACCAATGGAATGGgtaatatctggggtgtgtagtatgcatggttgcaatacagtgatatccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaatcaggatgggtgacttcatatttttctttttcccccctccctagTTATCACGAGTTTATGGCCCACTTTATACTTTATATCTGGGGAGGAAGCCAACTGTTGTTTTACATGGATATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGACAGGGGTATCTCCCATTTTTTGATAAAGCTACCAATGGAATGGgtaatatctggggtgtgtagtatgcatggttgcaatacagtgatatccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA---GCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaatcaggatgggtgacttcatatttttctttttcccccctccctagTTATCACGAGTTTATGGCCCACTTTATACTTTATATCTGGGGAGGAAGCCAACTGTTGTTTTACATGGATATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGACAGGGGTATCTCCCATTTTTTGATAAAGCTACCAATGGAATGGgtaatatctggggtgtgtagtatgcatggttgcaatacagtgatatccaa #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAG-AAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg atgcccatctcctgcctacatgtacacattaaatattctattccatttagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACAACAAGAATT-AACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGggtagtagtagcttagggatgtgggcttacatctaagttaattaggccatt Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg atgcccatctcctgcctacatgtacacattaaatattctattccatttagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACAACAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGggtagtagtagcttagggatgtgggcttacatctaagttaattaggccatt Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccatctcctgcctacatgtacacattaaatattctattccatttagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACAACAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGgtagtagtagcttagggatgtgggcttacatctaagttaattaggccatt Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccatctcctgcctacatgtacacattaaatattctattccatttagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACAACAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGgtagtagtagcttagggatgtgggcttacatctaagttaattaggccatt Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccatctcctgcctacatgtacacattaaatattctattccatttagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACAACAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGgtagtagtagcttagggatgtgggcttacatctaagttaattaggccatt Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccatctcctgcctacatgtacacattaaatattctattccatttagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACAACAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGgtagtagtagcttagggatgtgggcttacatctaagttaattaggccatt Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGCAAATTGAAGAATGAAAAGGAATCTCACAG atgcccatctcctgcctacatgtacacattaaatattctattccatttagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACAACAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGGTAGTAGTAGCTTAGGGATGTGGGCTTACATctaagttaattaggccatt Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGC- atgcccatctcctgcctacatgtacacattaaatattctattccatttagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACAACAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGGTAgtagtagcttagggatgtgggcttacatctaagttaattaggccatt #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGG-CAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactaggGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCCAGCTTT-AGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from CESAR gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactaggGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCCAGCTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCCAGCTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGC-AGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCCAGCTT-TAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Pairagon GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCCAGCTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCCAGCTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCCAGCTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg #### Dak_ID2899_14 --> 0 - 2 Original Alignment CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACT-GACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa ccttactacagctagtgccaattaattcaacaccaccccatgtgctccagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTG------AAAACTCGACCTGC-AACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGaagtgagtcagtgtctttacctcccagcaaaaagtgaggttgtgccatatgc Alignment from CESAR CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa ccttactacagctagtgccaattaattcaacaccaccccatgtgctccagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTGAAAACTCGACCT------GCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGaagtgagtcagtgtctttacctcccagcaaaaagtgaggttgtgccatatgc Alignment from Spaln_aa2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA ccttactacagctagtgccaattaattcaacaccaccccatgtgctccagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTGAAAACTCGACCT------GCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtgagtcagtgtctttacctcccagcaaaaagtgaggttgtgccatatgc Alignment from Spaln_nt2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA ccttactacagctagtgccaattaattcaacaccaccccatgtgctccagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTGAA----AACTC-GACCT-GCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtgagtcagtgtctttacctcccagcaaaaagtgaggttgtgccatatgc Alignment from Pairagon CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAA----------GGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA ccttactacagctagtgccaattaattcaacaccaccccatgtgctccagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTGAAAACTCGACCTG----------------CAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtgagtcagtgtctttacctcccagcaaaaagtgaggttgtgccatatgc Alignment from Exonerate_protein2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA ccttactacagctagtgccaattaattcaacaccaccccatgtgctccagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTGAAAACTCGACCT------GCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtgagtcagtgtctttacctcccagcaaaaagtgaggttgtgccatatgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA ccttactacagctagtgccaattaattcaacaccaccccatgtgctccagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTGAAAACTCGACCT------GCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtgagtcagtgtctttacctcccagcaaaaagtgaggttgtgccatatgc #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCA-TCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg caaccccctctaaattaccaactatctctcgccttgcctttgtctttcaggtACCCTAGGTGTGACCTTGTCACTCCTGTA-TGTGCCTGGCACCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGggtaagtatactgtaacactgtttgttacgttgtgtcagctgccaggcaca Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg caaccccctctaaattaccaactatctctcgccttgcctttgtctttcaggtACCCTAGGTGTGACCTTGTCACTCCTGTATGTGCCTGGCACCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGggtaagtatactgtaacactgtttgttacgttgtgtcagctgccaggcaca Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccctctaaattaccaactatctctcgccttgcctttgtctttcagGTACCCTAGGTGTGACCTTGTCACTCCTGTATGTGCCTGGCACCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGGgtaagtatactgtaacactgtttgttacgttgtgtcagctgccaggcaca Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCA-TCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccctctaaattaccaactatctctcgccttgcctttgtctttcagGTACCCTAGGTGTGACCTTGTCACTCCTGTA-TGTGCCTGGCACCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTT---GTTGGgtaagtatactgtaacactgtttgttacgttgtgtcagctgccaggcaca Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCA-TCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccctctaaattaccaactatctctcgccttgcctttgtctttcagGTACCCTAGGTGTGACCTTGTCACTCCTGTA-TGTGCCTGGCACCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTT---GTTGGgtaagtatactgtaacactgtttgttacgttgtgtcagctgccaggcaca Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccctctaaattaccaactatctctcgccttgcctttgtctttcagGTACCCTAGGTGTGACCTTGTCACTCCTGTATGTGCCTGGCACCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGGgtaagtatactgtaacactgtttgttacgttgtgtcagctgccaggcaca Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccctctaaattaccaactatctctcgccttgcctttgtctttcagGTACCCTAGGTGTGACCTTGTCACTCCTGTATGTGCCTGGCACCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGGgtaagtatactgtaacactgtttgttacgttgtgtcagctgccaggcaca Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccctctaaattaccaactatctctcgccttgcctttgtctttcagGTACCCTAGGTGTGACCTTGTCACTCCTGTATGTGCCTGGCACCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGGgtaagtatactgtaacactgtttgttacgttgtgtcagctgccaggcaca #### Dak_ID2910_3 --> 2 - 1 Original Alignment gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTT-GCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg tgcagctttgggaccactatgcatacctctgtcttctatccttttataaggcTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTCGCCTCTCCTC-TGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtaagatgtgtaccagactggataggttgtggaggggagcacattgaccc Alignment from CESAR gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg tgcagctttgggaccactatgcatacctctgtcttctatccttttataaggcTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTCGCCTCTCCTCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtaagatgtgtaccagactggataggttgtggaggggagcacattgattg Alignment from Spaln_aa2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTCGCCTCTCCTCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaccc Alignment from Spaln_nt2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTT-GCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGG---GCTAACAGGTATTATTGTAGGGTTGGTGTTTCGCCTCTCCT-CTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaccc Alignment from Pairagon GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTT-GCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGG---GCTAACAGGTATTATTGTAGGGTTGGTGTTTCGCCTCTCCT-CTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaccc Alignment from Exonerate_protein2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTCGCCTCTCCTCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTCGCCTCTCCTCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaccc #### Ddb1_ID2917_2 --> 2 - 0 Original Alignment gaCACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTC-ACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG tgacatgaacagctctccttgattgcaaccagtgtcctccctgtgcacaggcCACTTTACCCCAGCGGAGGACCTGAACCTGCTGATTGCTAAGAACACAAGATTAGAAATTTATGTGGTGCACTGCAGAGG-TGTGCGCCCAGTAAAAGAGGTTGGAATGTATGGCAAGATTGCAGTTATGGAACTATTCAGGCCCAAGgtaagggactctgacagtgcaagaaacaacctggtaagaggggtgcacag Alignment from CESAR gaCACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG tgacatgaacagctctccttgattgcaaccagtgtcctccctgtgcacaggcCACTTTACCCCAGCGGAGGACCTGAACCTGCTGATTGCTAAGAACACAAGATTAGAAATTTATGTGGTGCACTGCAGAGGTGTGCGCCCAGTAAAAGAGGTTGGAATGTATGGCAAGATTGCAGTTATGGAACTATTCAGGCCCAAGgtaagggactctgacagtgcaagaaacaacctggtaagaggggtgcacag Alignment from Spaln_aa2Genome GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG tgacatgaacagctctccttgattgcaaccagtgtcctccctgtgcacagGCCACTTTACCCCAGCGGAGGACCTGAACCTGCTGATTGCTAAGAACACAAGATTAGAAATTTATGTGGTGCACTGCAGAGGTGTGCGCCCAGTAAAAGAGGTTGGAATGTATGGCAAGATTGCAGTTATGGAACTATTCAGGCCCAAGgtaagggactctgacagtgcaagaaacaacctggtaagaggggtgcacag Alignment from Spaln_nt2Genome GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG tgacatgaacagctctccttgattgcaaccagtgtcctccctgtgcacagGCCACTTTACCCCAGCGGAGGACCTGAACCTGCTGATTGCTAAGAACACAAGATTAGAAATTTATGTGGTGCACTGCAGAGGTGTGCGCCCAGTAAAAGAGGTTGGAATGTATGGCAAGATTGCAGTTATGGAACTATTCAGGCCCAAGgtaagggactctgacagtgcaagaaacaacctggtaagaggggtgcacag Alignment from Pairagon GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGT-CACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG tgacatgaacagctctccttgattgcaaccagtgtcctccctgtgcacagGCCACTTTACCCCAGCGGAGGACCTGAACCTGCTGATTGCTAAGAACACAAGATTAGAAATTTATGTGGTGCACTGCAGA-GGTGTGCGCCCAGTAAAAGAGGTTGGAATGTATGGCAAGATTGCAGTTATGGAACTATTCAGGCCCAAGgtaagggactctgacagtgcaagaaacaacctggtaagaggggtgcacag Alignment from Exonerate_protein2genome GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG tgacatgaacagctctccttgattgcaaccagtgtcctccctgtgcacagGCCACTTTACCCCAGCGGAGGACCTGAACCTGCTGATTGCTAAGAACACAAGATTAGAAATTTATGTGGTGCACTGCAGAGGTGTGCGCCCAGTAAAAGAGGTTGGAATGTATGGCAAGATTGCAGTTATGGAACTATTCAGGCCCAAGgtaagggactctgacagtgcaagaaacaacctggtaagaggggtgcacag Alignment from Exonerate_coding2genome GTGAACGGCTGTGTGACCGGACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG tgacatgaacagctctccttgattgcaaccaGTGTCCTCCCTGTGCACAGGCCACTTTACCCCAGCGGAGGACCTGAACCTGCTGATTGCTAAGAACACAAGATTAGAAATTTATGTGGTGCACTGCAGAGGTGTGCGCCCAGTAAAAGAGGTTGGAATGTATGGCAAGATTGCAGTTATGGAACTATTCAGGCCCAAGgtaagggactctgacagtgcaagaaacaacctggtaagaggggtgcacag Alignment from GeneWise GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG tgacatgaacagctctccttgattgcaaccagtgtcctccctgtgcacagGCCACTTTACCCCAGCGGAGGACCTGAACCTGCTGATTGCTAAGAACACAAGATTAGAAATTTATGTGGTGCACTGCAGAGGTGTGCGCCCAGTAAAAGAGGTTGGAATGTATGGCAAGATTGCAGTTATGGAACTATTCAGGCCCAAGgtaagggactctgacagtgcaagaaacaacctggtaagaggggtgcacag #### Ddb1_ID2924_9 --> 0 - 0 Original Alignment CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGT-GTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tatctgtttattcaagtctttagtctcaggctgccttgtttcttctgcagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTATAGATATGTTTCGTGG-GGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcggcacccctaaagagcggaaggctaggagctgtaaacagcctta Alignment from CESAR CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tatctgtttattcaagtctttagtctcaggctgccttgtttcttctgcagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTATAGATATGTTTCGTGGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcggcacccctaaagagcggaaggctaggagctgtaaacagcctta Alignment from Spaln_aa2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tatctgtttattcaagtctttagtctcaggctgccttgtttcttctgcagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTATAGATATGTTTCGTGGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcggcacccctaaagagcggaaggctaggagctgtaaacagcctta Alignment from Spaln_nt2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tatctgtttattcaagtctttagtctcaggctgccttgtttcttctgcagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTATAGATATGTTTCGTGGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcggcacccctaaagagcggaaggctaggagctgtaaacagcctta Alignment from Pairagon CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tatctgtttattcaagtctttagtctcaggctgccttgtttcttctgcagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTATAGATATGTTTCGTGGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcggcacccctaaagagcggaaggctaggagctgtaaacagcctta Alignment from Exonerate_protein2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tatctgtttattcaagtctttagtctcaggctgccttgtttcttctgcagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTATAGATATGTTTCGTGGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcggcacccctaaagagcggaaggctaggagctgtaaacagcctta Alignment from Exonerate_coding2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tatctgtttattcaagtctttagtctcaggctgccttgtttcttctgcagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTATAGATATGTTTCGTGGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcggcacccctaaagagcggaaggctaggagctgtaaacagcctta Alignment from GeneWise CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tatctgtttattcaagtctttagtctcaggctgccttgtttcttctgcagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTATAGATATGTTTCGTGGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcggcacccctaaagagcggaaggctaggagctgtaaacagcctta #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGA-CTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagtCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACCTTTGGACAG-TATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAggtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagtCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACCTTTGGACAGTATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAggtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACCTTTGGACAGTATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACCTTTGGACAGTATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGA-CTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACCTTTGGACAG-TATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACCTTTGGACAGTATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACCTTTGGACAGTATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACCTTTGGACAGTATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGC-AAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg taggatggccggaacctgtgtagataacggactgtggttgtgtcttacagtgCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTCAAATTGG-TAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATggtaagttgatgattgatctgagactccttttttttttttagaggcctatt Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg taggatggccggaacctgtgtagataacggactgtggttgtgtcttacagtgCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTCAAATTGGTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATggtaagttgatgattgatctgagactccttttttttttttagaggcctatt Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggccggaacctgtgtagataacggactgtggttgtgtcttacagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTCAAATTGGTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgattgatctgagactccttttttttttttagaggcctatt Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggccggaacctgtgtagataacggactgtggttgtgtcttacagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTCAAATTGGTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgattgatctgagactccttttttttttttagaggcctatt Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggccggaacctgtgtagataacggactgtggttgtgtcttacagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTCAAATTGGTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgattgatctgagactccttttttttttttagaggcctatt Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggccggaacctgtgtagataacggactgtggttgtgtcttacagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTCAAATTGGTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgattgatctgagactccttttttttttttagaggcctatt Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggccggaacctgtgtagataacggactgtggttgtgtcttacagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTCAAATTGGTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgattgatctgagactccttttttttttttagaggcctatt Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG taggatggccggaacctgtgtagataacggactgtggttgtgtcttacagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTCAAATTGGTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgattgatctgagactccttttttttttttagaggcctatt #### Ddb1_ID2936_21 --> 2 - 0 Original Alignment gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTAC-TCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggagaagactatcaagaacatggcttccatttcatttcaggaAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGGGCAGTGTACCTCGATGG-CGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtgagcggcaagggtttataagctgaactctgatgacccacatttggagt Alignment from CESAR gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggagaagactatcaagaacatggcttccatttcatttcaggaAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGGGCAGTGTACCTCGATGGCGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtgagcggcaagggtttataagctgaactctgatgacccacatttggagt Alignment from Spaln_aa2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggagaagactatcaagaacatggcttccatttcatttcagGAAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGGGCAGTGTACCTCGATGGCGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtgagcggcaagggtttataagctgaactctgatgacccacatttggagt Alignment from Spaln_nt2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggagaagactatcaagaacatggcttccatttcatttcagGAAAGCT---GACTGTCACTGATAAGGAAGTAAAAGGGGCAGTGTACCTCGATGGCGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtgagcggcaagggtttataagctgaactctgatgacccacatttggagt Alignment from Pairagon GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTA-CTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggagaagactatcaagaacatggcttccatttcatttcagGAAAGCT---GACTGTCACTGATAAGGAAGTAAAAGGGGCAGTGTACCTCGATGGC-GAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtgagcggcaagggtttataagctgaactctgatgacccacatttggagt Alignment from Exonerate_protein2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggagaagactatcaagaacatggcttccatttcatttcagGAAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGGGCAGTGTACCTCGATGGCGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtgagcggcaagggtttataagctgaactctgatgacccacatttggagt Alignment from Exonerate_coding2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggagaagactatcaagaacatggcttccatttcatttcagGAAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGGGCAGTGTACCTCGATGGCGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtgagcggcaagggtttataagctgaactctgatgacccacatttggagt Alignment from GeneWise GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggagaagactatcaagaacatggcttccatttcatttcagGAAAGCTG---ACTGTCACTGATAAGGAAGTAAAAGGGGCAGTGTACCTCGATGGCGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtgagcggcaagggtttataagctgaactctgatgacccacatttggagt #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGG-CAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg tagggcctggtagagggaagtgctctggcttatgtacctttctcttccagtGCCGCAACGACTGTCGAGGAACGTCCAGCATT-ACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtgagcgctgtgggatggcttgcttatgcaaaatctgaaccttcatttcc Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg tagggcctggtagagggaagtgctctggcttatgtacctttctcttccagtGCCGCAACGACTGTCGAGGAACGTCCAGCATTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtgagcgctgtgggatggcttgcttatgcaaaagttttctgaattatgct Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagggcctggtagagggaagtgctctggcttatgtacctttctcttccagTGCCGCAACGACTGTCGAGGAACGTCCAGCATTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtgagcgctgtgggatggcttgcttatgcaaaatctgaaccttcatttcc Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGC-AGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagggcctggtagagggaagtgctctggcttatgtacctttctcttccagTGCCGCAACGACTGTCGAGGAACGTCCAGCA-TTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtgagcgctgtgggatggcttgcttatgcaaaatctgaaccttcatttcc Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCG-GCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagggcctggtagagggaagtgctctggcttatgtacctttctcttccagTGCCGCAACGACTGTCGAGGAACGTCCAGCA-TTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtgagcgctgtgggatggcttgcttatgcaaaatctgaaccttcatttcc Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagggcctggtagagggaagtgctctggcttatgtacctttctcttccagTGCCGCAACGACTGTCGAGGAACGTCCAGCATTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtgagcgctgtgggatggcttgcttatgcaaaatctgaaccttcatttcc Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAGGGCTGGTGA tagggcctggtagagggaagtgctctggcttatgtacctttctcttccagTGCCGCAACGACTGTCGAGGAACGTCCAGCATTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGGTGAGCGCTgtgggatggcttgcttatgcaaaatctgaaccttcatttcc Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagggcctggtagagggaagtgctctggcttatgtacctttctcttccagTGCCGCAACGACTGTCGAGGAACGTCCAGCATTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtgagcgctgtgggatggcttgcttatgcaaaatctgaaccttcatttcc #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCC-GCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaaggtATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTCGCTGCAGGGG-TGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAggtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaaggtATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTCGCTGCAGGGGTGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAggtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTCGCTGCAGGGGTGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGC-CGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTCGCTGCAGGGG-TGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGC-CGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTCGCTGCAGGGG-TGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTCGCTGCAGGGGTGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTCGCTGCAGGGGTGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTCGCTGCAGGGGTGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga #### Dock8_ID5395_16 --> 0 - 2 Original Alignment GTCATCTTTGGCAAG-TCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgattgtagagcccaaaaatataccgatttccccctaatcctttcacagGTGATCTATGGAAAGCTTGAGG---C-TGAATTTTTGCAGGAAGTCTATACAGCTATTACGTACCACAACaagtaaggagtaggaatctctcagactcccactatgaaaacctgtcctctta Alignment from CESAR GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgattgtagagcccaaaaatataccgatttccccctaatcctttcacagGTGATCTATGGAAAGCTT---GAGGCTGAATTTTTGCAGGAAGTCTATACAGCTATTACGTACCACAACaagtaaggagtaggaatctctcagactcccactatgaaaacctgtcctctta Alignment from Spaln_aa2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatataccgatttccccctaatcctttcacagGTGATCTATGGAAAG---CTTGAGGCTGAATTTTTGCAGGAAGTCTATACAGCTATTACGTACCACAACAAgtaaggagtaggaatctctcagactcccactatgaaaacctgtcctctta Alignment from Spaln_nt2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatataccgatttccccctaatcctttcacagGTGATCTATGGAAAG---CTTGAGGCTGAATTTTTGCAGGAAGTCTATACAGCTATTACGTACCACAACAAgtaaggagtaggaatctctcagactcccactatgaaaacctgtcctctta Alignment from Pairagon GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatataccgatttccccctaatcctttcacagGTGATCTATGGAAAGCT---TGAGGCTGAATTTTTGCAGGAAGTCTATACAGCTATTACGTACCACAACAAgtaaggagtaggaatctctcagactcccactatgaaaacctgtcctctta Alignment from Exonerate_protein2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatataccgatttccccctaatcctttcacagGTGATCTATGGAAAGCTTGAGGCT---GAATTTTTGCAGGAAGTCTATACAGCTATTACGTACCACAACAAgtaaggagtaggaatctctcagactcccactatgaaaacctgtcctctta Alignment from Exonerate_coding2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatataccgatttccccctaatcctttcacagGTGATCTATGGAAAGCTTGAGGCT---GAATTTTTGCAGGAAGTCTATACAGCTATTACGTACCACAACAAgtaaggagtaggaatctctcagactcccactatgaaaacctgtcctctta Alignment from GeneWise GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatataccgatttccccctaatcctttcacagGTGATCTATGGAAAGCTTGAGGCT---GAATTTTTGCAGGAAGTCTATACAGCTATTACGTACCACAACAAgtaaggagtaggaatctctcagactcccactatgaaaacctgtcctctta #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAG-ACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg cgaacaaaatagtgaatgcaattaaagcattgattttgtttctaattcagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGCACAGGGC-GCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgagaaacccactatacactccatgcaaaaggcttcactctatatcgct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg cgaacaaaatagtgaatgcaattaaagcattgattttgtttctaattcagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGCACAGGGCGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgagaaacccactatacactccatgcaaaaggcttcactctatatcgct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG cgaacaaaatagtgaatgcaattaaagcattgattttgtttctaattcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGCACAGGGCGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagaaacccactatacactccatgcaaaaggcttcactctatatcgct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG cgaacaaaatagtgaatgcaattaaagcattgattttgtttctaattcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGCACAGGGCGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagaaacccactatacactccatgcaaaaggcttcactctatatcgct Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAG-ACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG cgaacaaaatagtgaatgcaattaaagcattgattttgtttctaattcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGCACAGGGC-GCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagaaacccactatacactccatgcaaaaggcttcactctatatcgct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG cgaacaaaatagtgaatgcaattaaagcattgattttgtttctaattcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGCACAGGGCGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagaaacccactatacactccatgcaaaaggcttcactctatatcgct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG cgaacaaaatagtgaatgcaattaaagcattgattttgtttctaattcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGCACAGGGCGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagaaacccactatacactccatgcaaaaggcttcactctatatcgct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG cgaacaaaatagtgaatgcaattaaagcattgattttgtttctaattcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGCACAGGGCGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagaaacccactatacactccatgcaaaaggcttcactctatatcgct #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGC-ACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tagggtagatggccaatctctaatttatgcctacctgcttacctgtgtagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCCACCATTGCCT-ACGGTATCAAGAGTGTCATGCCGAGAGTGTGGGCCTGTATCTCTGT---ACCCCACAAGTGTTAgagtaaggaaactctccaaattcacgggattcccacctctttctgttctgca Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tagggtagatggccaatctctaatttatgcctacctgcttacctgtgtagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCCACCATTGCCTACGGTATCAAGAGTGTCATGCCGAGAGTGTGGGCCTGTATCTCTGT---ACCCCACAAGTGTTAgagtaaggaaactctccaaattcacgggattggcactgctctttctttccca Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tagggtagatggccaatctctaatttatgcctacctgcttacctgtgtagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCCACCATTGCCTACGGTATCAAGAGTGTCATGCCGAGAGTGTGGGCCTGTATCTCTGT---ACCCCACAAGTGTTAGAgtaaggaaactctccaaattcacgggattcccacctctttctgttctgca Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGC-ACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tagggtagatggccaatctctaatttatgcctacctgcttacctgtgtagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCCACCATTGCCTAC-GGTATCAAGAGTGTCATGCCGAGAGTGTGGGCCTGTATCTCTGT---ACCCCACAAGTGTTAGAgtaaggaaactctccaaattcacgggattcccacctctttctgttctgca Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAG-CACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tagggtagatggccaatctctaatttatgcctacctgcttacctgtgtagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCCACCATTGCCTAC-GGTATCAAGAGTGTCATGCCGAGAGTGTGGGCCTGTATCTCTGT---ACCCCACAAGTGTTAGAgtaaggaaactctccaaattcacgggattcccacctctttctgttctgca Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tagggtagatggccaatctctaatttatgcctacctgcttacctgtgtagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCCACCATTGCCTACGGTATCAAGAGTGTCATGCCGAGAGTGTGGGCCTGTATCTCTGT---ACCCCACAAGTGTTAGAgtaaggaaactctccaaattcacgggattcccacctctttctgttctgca Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tagggtagatggccaatctctaatttatgcctacctgcttacctgtgtagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCCACCATTGCCTACGGTATCAAGAGTGTCATGCCGAGAGTGTGGGCCTGTATCTCTGT---ACCCCACAAGTGTTAGAgtaaggaaactctccaaattcacgggattcccacctctttctgttctgca Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tagggtagatggccaatctctaatttatgcctacctgcttacctgtgtagATCAAGAGCTGGTACCGGAGCGGTGAGACTTGGGACAGTGAATCTAGCCACCATTGCCTACGGTATCAAGAGTGTCATGCCGAGAGTGTGGGCCTGTATCTCTGT---ACCCCACAAGTGTTAGAgtaaggaaactctccaaattcacgggattcccacctctttctgttctgca #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGAC-AAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACCAAGG-AACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACCAAGGAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACCAAGGAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACCAAGGAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACCAAGGAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACCAAGGAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACCAAGGAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACCAAGGAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat #### Dpp3_ID742_11 --> 0 - 0 Original Alignment GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTG-GGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aatgtggctatggctggagtggccagtgtcacacaccctccttttcgcagGATCTGTATATCCACTGGAAAGGTCCATCGTTTGATGTACAAGTGCGGCT-ACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaggtggtcccaaaggcagatcctgttacaggtgctactgatcatggta Alignment from CESAR GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aatgtggctatggctggagtggccagtgtcacacaccctccttttcgcagGATCTGTATATCCACTGGAAAGGTCCATCGTTTGATGTACAAGTGCGGCTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaggtggtcccaaaggcagatcctgttacaggtgctactgatcatggta Alignment from Spaln_aa2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aatgtggctatggctggagtggccagtgtcacacaccctccttttcgcagGATCTGTATATCCACTGGAAAGGTCCATCGTTTGATGTACAAGTGCGGCTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaggtggtcccaaaggcagatcctgttacaggtgctactgatcatggta Alignment from Spaln_nt2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aatgtggctatggctggagtggccagtgtcacacaccctccttttcgcagGATCTGTATATCCACTGGAAAGGTCCATCGTTTGATGTACAAGTGCGGCTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaggtggtcccaaaggcagatcctgttacaggtgctactgatcatggta Alignment from Pairagon GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aatgtggctatggctggagtggccagtgtcacacaccctccttttcgcagGATCTGTATATCCACTGGAAAGGTCCATCGTTTGATGTACAAGTGCGGCTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaggtggtcccaaaggcagatcctgttacaggtgctactgatcatggta Alignment from Exonerate_protein2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aatgtggctatggctggagtggccagtgtcacacaccctccttttcgcagGATCTGTATATCCACTGGAAAGGTCCATCGTTTGATGTACAAGTGCGGCTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaggtggtcccaaaggcagatcctgttacaggtgctactgatcatggta Alignment from Exonerate_coding2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aatgtggctatggctggagtggccagtgtcacacaccctccttttcgcagGATCTGTATATCCACTGGAAAGGTCCATCGTTTGATGTACAAGTGCGGCTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaggtggtcccaaaggcagatcctgttacaggtgctactgatcatggta Alignment from GeneWise GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aatgtggctatggctggagtggccagtgtcacacaccctccttttcgcagGATCTGTATATCCACTGGAAAGGTCCATCGTTTGATGTACAAGTGCGGCTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaggtggtcccaaaggcagatcctgttacaggtgctactgatcatggta #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGG-GAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGACGAGAAGCTAA-ATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGACGAGAAGCTAAATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGACGAGAAGCTAAATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGACGAGAAGCTAAATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGG-GAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGACGAGAAGCT-AAATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGACGAGAAGCTAAATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGACGAGAAGCTAAATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGACGAGAAGCTAAATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCA-CAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag tggatgactgggataatgtcccaaaatcatcagctgtcttccccacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCCAGCTTC-ACCTCAGGCCAGTCACCCCCCTGCTCACTATCAGaggtgggttttacataggaagtgtaacactttttttatcctgacactggctt Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag tggatgactgggataatgtcccaaaatcatcagctgtcttccccacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCCAGCTTCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAGaggtgggttttacataggaagtgtaacactttttttatcctgacactggctt Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatcatcagctgtcttccccacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCCAGCTTCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAGAGgtgggttttacataggaagtgtaacactttttttatcctgacactggctt Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatcatcagctgtcttccccacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCCAGCTTCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAGAGgtgggttttacataggaagtgtaacactttttttatcctgacactggctt Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatcatcagctgtcttccccacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCCAGCTTCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAGAGgtgggttttacataggaagtgtaacactttttttatcctgacactggctt Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatcatcagctgtcttccccacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCCAGCTTCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAGAGgtgggttttacataggaagtgtaacactttttttatcctgacactggctt Alignment from Exonerate_coding2genome AGGATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatcatcagctgtcttccccacacAGGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCCAGCTTCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAGAGgtgggttttacataggaagtgtaacactttttttatcctgacactggctt Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatcatcagctgtcttccccacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCCAGCTTCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAGAGgtgggttttacataggaagtgtaacactttttttatcctgacactggctt #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGAC-AACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tttcccaagtagtttagtggcagccaactctgttctctttacaatcccagaATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACCAACCATG-GGATGGGGAAAAGGGACCTCGAaggtaaagggctaggggcctgcctttgcttgttttgttccgcagaGGCTGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tttcccaagtagtttagtggcagccaactctgttctctttacaatcccagaATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACCAACCATGGGATGGGGAAAAGGGACCTCGAaggtaaagggctaggggcctgcttcttttcttgttgcttttcagaGGCTGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGGGGC------------------------------------------CGGA tttcccaagtagtttagtggcagccaactctgttctctttacaatcccagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACCAACCATGGGATGGGGAAAAGGGACCTCGAAGGTAAAGGGCTAGGGGCCTGCCTTTGCTTGTTTTGTTCCGCAGAGGCTGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tttcccaagtagtttagtggcagccaactctgttctctttacaatcccagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACCAACCATGGGATGGGGAAAAGGGACCTCGAAGgtaaagggctaggggcctgcctttgcttgttttgttccgcagAGGCTGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGA-CAACCACGTGGATGGGGACAAGGGTCCTCGAAGG------------------------------------------GGCCGGA tttcccaagtagtttagtggcagccaactctgttctctttacaatcccagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACCAACCATG-GGATGGGGAAAAGGGACCTCGAAGGTAAAGGGCTAGGGGCCTGCCTTTGCTTGTTTTGTTCCGCAGAGGCTGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tttcccaagtagtttagtggcagccaactctgttctctttacaatcccagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACCAACCATGGGATGGGGAAAAGGGACCTCGAAGgtaaagggctaggggcctgcctttgcttgttttgttccgcagAGGCTGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGGGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCA tttcccaagtagtttagtggcagccaactctgttctctttacaatcccagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACCAACCATGGGATGGGGAAAAGGGACCTCGAAGGTAAAGGGCTAGGGGCCTGCCTTTGCTTGTTTTGTTCCGCAGAGGCTGTA Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tttcccaagtagtttagtggcagccaactctgttctctttacaatcccagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACCAACCATGGGATGGGGAAAAGGGACCTCGAAGgtaaagggctaggggcctgcctttgcttgttttgttccgcagAGGCTGTA #### Drap1_ID988_2 --> 0 - 1 Original Alignment GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAG-ATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt atgcttcccccaggtgttgggagtgcagctggtgtcttggggatttccagACGCGGATCACAAAGATCATGCAGACAGATGAAGAACATTGGAA-AGTCGCAGCTGCTGTGCCAGTCATCATTtgtaaatacctcaagcccagttagtctgaggtggaataataccttacacat Alignment from CESAR GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt atgcttcccccaggtgttgggagtgcagctggtgtcttggggatttccagACGCGGATCACAAAGATCATGCAGACAGATGAAGAACATTGGAAAGTCGCAGCTGCTGTGCCAGTCATCATTtgtaaatacctcaagcccagttagtctgaggtggaataataccttacacac Alignment from Spaln_aa2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccaggtgttgggagtgcagctggtgtcttggggatttccagACGCGGATCACAAAGATCATGCAGACAGATGAAGAACATTGGAAAGTCGCAGCTGCTGTGCCAGTCATCATTTgtaaatacctcaagcccagttagtctgaggtggaataataccttacacat Alignment from Spaln_nt2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccaggtgttgggagtgcagctggtgtcttggggatttccagACGCGGATCACAAAGATCATGCAGACAGATGAAGAACATTGGAAAGTCGCAGCTGCTGTGCCAGTCATCATTTgtaaatacctcaagcccagttagtctgaggtggaataataccttacacat Alignment from Pairagon GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccaggtgttgggagtgcagctggtgtcttggggatttccagACGCGGATCACAAAGATCATGCAGACAGATGAAGAACATTGGAAAGTCGCAGCTGCTGTGCCAGTCATCATTTgtaaatacctcaagcccagttagtctgaggtggaataataccttacacat Alignment from Exonerate_protein2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccaggtgttgggagtgcagctggtgtcttggggatttccagACGCGGATCACAAAGATCATGCAGACAGATGAAGAACATTGGAAAGTCGCAGCTGCTGTGCCAGTCATCATTTgtaaatacctcaagcccagttagtctgaggtggaataataccttacacat Alignment from Exonerate_coding2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccaggtgttgggagtgcagctggtgtcttggggatttccagACGCGGATCACAAAGATCATGCAGACAGATGAAGAACATTGGAAAGTCGCAGCTGCTGTGCCAGTCATCATTTgtaaatacctcaagcccagttagtctgaggtggaataataccttacacat Alignment from GeneWise GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT atgcttcccccaggtgttgggagtgcagctggtgtcttggggatttccagACGCGGATCACAAAGATCATGCAGACAGATGAAGAACATTGGAAAGTCGCAGCTGCTGTGCCAGTCATCATTTgtaaatacctcaagcccagttagtctgaggtggaataataccttacacat #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg gaaacatccaagttgtttggctgggctatctcagtctctcctgtcaccagacATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGCCAATGTGAGCCACGGCTTCCAAT-GGGACCTAACATTCGTTCCTGTGTGggtatgttggtgtgtcctgcaagtctctaaccttcaagtggaaccactatg Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg gaaacatccaagttgtttggctgggctatctcagtctctcctgtcaccagacATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGCCAATGTGAGCCACGGCTTCCAATGGGACCTAACATTCGTTCCTGTGTGggtatgttggtgtgtcctgcaagtctctaaccttcaagtggaaccactatg Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaagttgtttggctgggctatctcagtctctcctgtcaccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGCCAATGTGAGCCACGGCTTCCAATGGGACCTAACATTCGTTCCTGTGTGGgtatgttggtgtgtcctgcaagtctctaaccttcaagtggaaccactatg Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaagttgtttggctgggctatctcagtctctcctgtcaccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGCCAATGTGAGCCACGGCTTCCAATGGGACCTAACATTCGTTCCTGTGTGGgtatgttggtgtgtcctgcaagtctctaaccttcaagtggaaccactatg Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaagttgtttggctgggctatctcagtctctcctgtcaccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGCCAATGTGAGCCACGGCTTCCAA-TGGGACCTAACATTCGTTCCTGTGTGGgtatgttggtgtgtcctgcaagtctctaaccttcaagtggaaccactatg Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaagttgtttggctgggctatctcagtctctcctgtcaccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGCCAATGTGAGCCACGGCTTCCAATGGGACCTAACATTCGTTCCTGTGTGGgtatgttggtgtgtcctgcaagtctctaaccttcaagtggaaccactatg Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaagttgtttggctgggctatctcagtctctcctgtcaccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGCCAATGTGAGCCACGGCTTCCAATGGGACCTAACATTCGTTCCTGTGTGGgtatgttggtgtgtcctgcaagtctctaaccttcaagtggaaccactatg Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gaaacatccaagttgtttggctgggctatctcagtctctcctgtcaccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGCCAATGTGAGCCACGGCTTCCAATGGGACCTAACATTCGTTCCTGTGTGGgtatgttggtgtgtcctgcaagtctctaaccttcaagtggaaccactatg #### Efemp2_ID1034_7 --> 2 - 1 Original Alignment atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTG-GCTACAAGGCTCTGCCAAg tctcaaattttctgcatgaccaataactgtctccccactctttaacacagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGCGCAA-GAGGCTCTGCCAAggtgagtaggcttgggttgacaagcacagaaattccataatttaccatgag Alignment from CESAR atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg tctcaaattttctgcatgaccaataactgtctccccactctttaacacagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGCGCAAGAGGCTCTGCCAAggtgagtaggcttgggttgacaagcacagaaattccataatttaccatgag Alignment from Spaln_aa2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttctgcatgaccaataactgtctccccactctttaacacagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGCGCAAGAGGCTCTGCCAAGgtgagtaggcttgggttgacaagcacagaaattccataatttaccatgag Alignment from Spaln_nt2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttctgcatgaccaataactgtctccccactctttaacacagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGCGCAAGAGGCTCTGCCAAGgtgagtaggcttgggttgacaagcacagaaattccataatttaccatgag Alignment from Pairagon ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttctgcatgaccaataactgtctccccactctttaacacagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGCGCAAGAGGCTCTGCCAAGgtgagtaggcttgggttgacaagcacagaaattccataatttaccatgag Alignment from Exonerate_protein2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttctgcatgaccaataactgtctccccactctttaacacagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGCGCAAGAGGCTCTGCCAAGgtgagtaggcttgggttgacaagcacagaaattccataatttaccatgag Alignment from Exonerate_coding2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttctgcatgaccaataactgtctccccactctttaacacagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGCGCAAGAGGCTCTGCCAAGgtgagtaggcttgggttgacaagcacagaaattccataatttaccatgag Alignment from GeneWise ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaattttctgcatgaccaataactgtctccccactctttaacacagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGCGCAAGAGGCTCTGCCAAGgtgagtaggcttgggttgacaagcacagaaattccataatttaccatgag #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGC-GAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagaaTGGCATACAACAGTTGCACAGCAGCACTGTCGAACAAC-CCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGgtgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagaaTGGCATACAACAGTTGCACAGCAGCACTGTCGAACAACCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGgtgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTCGAACAACCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCG-CGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTCGAACAAC-CCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCG-CGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTCGAACAAC-CCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTCGAACAACCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Exonerate_coding2genome ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagaatggcatacaacagttgcacagcagcactgtcgaacaaccctcctcgagggacttgtgtctttagtgaaccagagggaagagctagttggggatttagatcagaaggagcaggtgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTCGAACAACCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc #### Ehbp1l1_ID1221_14 --> 2 - 0 Original Alignment gtGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gactggaatttctgttattcactggaagctccttaccatctccctgacaggtGGGCCACCACCTACTGAAAAGCTCATCTCGTA-CTTGGAAGAAGAGACAGGGCTGgtgagtattggtaggttgaatggtggctgttactttcctgagtggcttag Alignment from CESAR gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gactggaatttctgttattcactggaagctccttaccatctccctgacaggtGGGCCACCACCTACTGAAAAGCTCATCTCGTACTTGGAAGAAGAGACAGGGCTGgtgagtattggtaggttgaatggtggctgttactttcctgagtggcttag Alignment from Spaln_aa2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gactggaatttctgttattcactggaagctccttaccatctccctgacagGTGGGCCACCACCTACTGAAAAGCTCATCTCGTACTTGGAAGAAGAGACAGGGCTGgtgagtattggtaggttgaatggtggctgttactttcctgagtggcttag Alignment from Spaln_nt2Genome GTGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gactggaatttctgttattcactggaagctccttaccatctccctgacagGTGGGCCACCACCTACTGAAAAGCTCATCTCGTA-CTTGGAAGAAGAGACAGGGCTGgtgagtattggtaggttgaatggtggctgttactttcctgagtggcttag Alignment from Pairagon GTGGGCCCCCTCCTACTGA------------------GGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gactggaatttctgttattcactggaagctccttaccatctccctgacagGTGGGCCACCACCTACTGAAAAGCTCATCTCGTACTTGGA------------------AGAAGAGACAGGGCTGgtgagtattggtaggttgaatggtggctgttactttcctgagtggcttag Alignment from Exonerate_protein2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gactggaatttctgttattcactggaagctccttaccatctccctgacagGTGGGCCACCACCTACTGAAAAGCTCATCTCGTACTTGGAAGAAGAGACAGGGCTGgtgagtattggtaggttgaatggtggctgttactttcctgagtggcttag Alignment from Exonerate_coding2genome gactggaatttctgttattcactggaagctccttaccatctccctgacaggtgggccaccacctactgaaaagctcatctcgtacttggaagaagagacagggctggtgagtattggtaggttgaatggtggctgttactttcctgagtggcttag Alignment from GeneWise GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gactggaatttctgttattcactggaagctccttaccatctccctgacagGTGGGCCACCACCTACTGAAAAGCTCATCTCGTACTTGGAAGAAGAGACAGGGCTGgtgagtattggtaggttgaatggtggctgttactttcctgagtggcttag #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCA-GCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagctGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCACACTG-CATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAaggtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagctGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCACACTGCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAaggtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagCTGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCACACTGCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAG-CTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagCTGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCACACTGC-ATGACTGATGG---AGTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAG-----------------------GTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagCTGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG-----------------------------GATCCACACTGCATGACTGATGGAGTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Exonerate_protein2genome ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagctgccagaccctctagtgctgaaaagacaagtcctgccccagtaagtgcccctgcgccccaagttagagctatccggggccaaggggatccacactgcatgactgatggagtggggcatgagaccctagagcccccagcgactccacctgagacaaggtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Exonerate_coding2genome ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagctgccagaccctctagtgctgaaaagacaagtcctgccccagtaagtgcccctgcgccccaagttagagctatccggggccaaggggatccacactgcatgactgatggagtggggcatgagaccctagagcccccagcgactccacctgagacaaggtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagCTGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCACACTGCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga #### Ehbp1l1_ID1229_6 --> 1 - 1 Original Alignment gGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGA-AACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg catagatgatgtgtgaagtagtctggctcccatggttgtctcatccacagaGATGATGATATGCAAAGTCTTGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGACAACCTGGATG-CTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGGGGCCCCCAGTCTggtaatgatattgttgttcagattgctggtacctgaggtggatactagtcc Alignment from CESAR gGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg catagatgatgtgtgaagtagtctggctcccatggttgtctcatccacagaGATGATGATATGCAAAGTCTTGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGACAACCTGGATGCTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGGGGCCCCCAGTCTggtaatgatattgttgttcagattgctggtacctgaggtggatactagtcc Alignment from Spaln_aa2Genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG catagatgatgtgtgaagtagtctggctcccatggttgtctcatccacagAGATGATGATATGCAAAGTCTTGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGACAACCTGGATGCTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGGGGCCCCCAGTCTGgtaatgatattgttgttcagattgctggtacctgaggtggatactagtcc Alignment from Spaln_nt2Genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG catagatgatgtgtgaagtagtctggctcccatggttgtctcatccacagAGATGATGATATGCAAAGTCTTGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGACAACCTGGATGCTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGGGGCCCCCAGTCTGgtaatgatattgttgttcagattgctggtacctgaggtggatactagtcc Alignment from Pairagon GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGA-AACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG catagatgatgtgtgaagtagtctggctcccatggttgtctcatccacagAGATGATGATATGCAAAGTCTTGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGACAACCTGGATG-CTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGGGGCCCCCAGTCTGgtaatgatattgttgttcagattgctggtacctgaggtggatactagtcc Alignment from Exonerate_protein2genome catagatgatgtgtgaagtagtctggctcccatggttgtctcatccacagagatgatgatatgcaaagtcttgccagcctcatgagtgtgaagcctagtgatgtgggacaacctggatgctttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggttcagaccaggggcccccagtctggtaatgatattgttgttcagattgctggtacctgaggtggatactagtcc Alignment from Exonerate_coding2genome catagatgatgtgtgaagtagtctggctcccatggttgtctcatccacagagatgatgatatgcaaagtcttgccagcctcatgagtgtgaagcctagtgatgtgggacaacctggatgctttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggttcagaccaggggcccccagtctggtaatgatattgttgttcagattgctggtacctgaggtggatactagtcc Alignment from GeneWise GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG catagatgatgtgtgaagtagtctggctcccatggttgtctcatccacagAGATGATGATATGCAAAGTCTTGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGACAACCTGGATGCTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGGGGCCCCCAGTCTGgtaatgatattgttgttcagattgctggtacctgaggtggatactagtcc #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACT-CCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg acaatgcaaattctagataatgagtgattgcatgtgcactgtccatccagGTCCTCAGGACCCCCAGGGAACA-TTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtactgtctatttgctttttgaactaccaaacatgataccactttgtccc Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg acaatgcaaattctagataatgagtgattgcatgtgcactgtccatccagGTCCTCAGGACCCCCAGGGAACATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtactgtctatttgctttttgaactaccaaacatgataccactttgtccc Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattgcatgtgcactgtccatccagGTCCTCAGGACCCCCAGGGAACATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtactgtctatttgctttttgaactaccaaacatgataccactttgtccc Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattgcatgtgcactgtccatccagGTCCTCAGGACCCCCAGGGAACATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtactgtctatttgctttttgaactaccaaacatgataccactttgtccc Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattgcatgtgcactgtccatccagGTCCTCAGGACCCCCAGGGAACATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtactgtctatttgctttttgaactaccaaacatgataccactttgtccc Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattgcatgtgcactgtccatccagGTCCTCAGGACCCCCAGGGAACATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtactgtctatttgctttttgaactaccaaacatgataccactttgtccc Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattgcatgtgcactgtccatccagGTCCTCAGGACCCCCAGGGAACATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtactgtctatttgctttttgaactaccaaacatgataccactttgtccc Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattgcatgtgcactgtccatccagGTCCTCAGGACCCCCAGGGAACATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtactgtctatttgctttttgaactaccaaacatgataccactttgtccc #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAG-AAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG cataaagctgtagaactttatgataggttagtgtatttttaaatggccagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGCAAAGAACTTC-AGAACGCCTCAAAACGCAAGAGGAGAAGgtgagtatggatcactgataagatctgaaagtaaattggatcaaaagagt Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG cataaagctgtagaactttatgataggttagtgtatttttaaatggccagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGCAAAGAACTTCAGAACGCCTCAAAACGCAAGAGGAGAAGgtgagtatggatcactgataagatctgaaagtaaattggatcaaaagagt Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG cataaagctgtagaactttatgataggttagtgtatttttaaatggccagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGCAAAGAACTTCAGAACGCCTCAAAACGCAAGAGGAGAAGgtgagtatggatcactgataagatctgaaagtaaattggatcaaaagagt Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAG-AAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG cataaagctgtagaactttatgataggttagtgtatttttaaatggccagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGCAAAGAACTTCA-GAACGCCTCAAAACGCAAGAGGAGAAGgtgagtatggatcactgataagatctgaaagtaaattggatcaaaagagt Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAG-AAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG cataaagctgtagaactttatgataggttagtgtatttttaaatggccagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGCAAAGAACTTCA-GAACGCCTCAAAACGCAAGAGGAGAAGgtgagtatggatcactgataagatctgaaagtaaattggatcaaaagagt Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG cataaagctgtagaactttatgataggttagtgtatttttaaatggccagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGCAAAGAACTTCAGAACGCCTCAAAACGCAAGAGGAGAAGgtgagtatggatcactgataagatctgaaagtaaattggatcaaaagagt Alignment from Exonerate_coding2genome cataaagctgtagaactttatgataggttagtgtatttttaaatggccaggactttgaagaactggatcaggattttataatggccaaacaggtagaacagctggaaaaggaaaagcaaagaacttcagaacgcctcaaaacgcaagaggagaaggtgagtatggatcactgataagatctgaaagtaaattggatcaaaagagt Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG cataaagctgtagaactttatgataggttagtgtatttttaaatggccagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGCAAAGAACTTCAGAACGCCTCAAAACGCAAGAGGAGAAGgtgagtatggatcactgataagatctgaaagtaaattggatcaaaagagt #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAA-ATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAACATGG-GTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAACATGGGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAACATGGGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAACATGGGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAACATGGGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAACATGGGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAACATGGGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAACATGGGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG gtgctgcggtggaaccgatgatttcatgggcttctcatatctctttacagtCTTGCTGTACATCCTCGATGGAGTTC-TGTTGCTTCAGGGCAGACAGCTGGCGTGGACAAGGATGGAAAGgtgagagccagcatgcagatggcaatgagatcattgatcaagttttctgt Alignment from CESAR cCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG gtgctgcggtggaaccgatgatttcatgggcttctcatatctctttacagtCTTGCTGTACATCCTCGATGGAGTT-CTGTTGCTTCAGGGCAGACAGCTGGCGTGGACAAGGATGGAAAGgtgagagccagcatgcagatggcaatgagatcattgatcaagttttctgt Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG gtgctgcggtggaaccgatgatttcatgggcttctcatatctctttacagTCTTGCTGTACATCCTCGATGGAGTTCTGTTGCTTCAGGGCAGACAGCTGGCGTGGACAAGGATGGAAAGgtgagagccagcatgcagatggcaatgagatcattgatcaagttttctgt Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG gtgctgcggtggaaccgatgatttcatgggcttctcatatctctttacagTCTTGCTGTACATCCTCGATGGAGTTC-TGTTGCTTCAGGGCAGACAGCTGGCGTGGACAAGGATGGAAAGgtgagagccagcatgcagatggcaatgagatcattgatcaagttttctgt Alignment from Pairagon CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG gtgctgcggtggaaccgatgatttcatgggcttctcatatctctttacagTCTTGCTGTACATCCTCGATGGAGTTC-TGTTGCTTCAGGGCAGACAGCTGGCGTGGACAAGGATGGAAAGgtgagagccagcatgcagatggcaatgagatcattgatcaagttttctgt Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG gtgctgcggtggaaccgatgatttcatgggcttctcatatctctttacagTCTTGCTGTACATCCTCGATGGAGTTCTGTTGCTTCAGGGCAGACAGCTGGCGTGGACAAGGATGGAAAGgtgagagccagcatgcagatggcaatgagatcattgatcaagttttctgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG gtgctgcggtggaaccgatgatttcatgggcttctcatatctctttacagTCTTGCTGTACATCCTCGATGGAGTTCTGTTGCTTCAGGGCAGACAGCTGGCGTGGACAAGGATGGAAAGgtgagagccagcatgcagatggcaatgagatcattgatcaagttttctgt #### Eno4_ID12833_5 --> 2 - 0 Original Alignment gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGC-ATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG ttccagttttctaccttgcaaaaagacacacgtctccactttccctgtaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCAGTTCAGCACGGTAGTCATGG-CCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGATCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtaatgtaatattgtgggtgtgagtgtggaaaaagagttggtggcagtat Alignment from CESAR gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG ttccagttttctaccttgcaaaaagacacacgtctccactttccctgtaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCAGTTCAGCACGGTAGTCATGGCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGATCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtaatgtaatattgtgggtgtgagtgtggaaaaagagttggtggcagtat Alignment from Spaln_aa2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG ttccagttttctaccttgcaaaaagacacacgtctccactttccctgtagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCAGTTCAGCACGGTAGTCATGGCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGATCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtaatgtaatattgtgggtgtgagtgtggaaaaagagttggtggcagtat Alignment from Spaln_nt2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG ttccagttttctaccttgcaaaaagacacacgtctccactttccctgtagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCAGTTCAGCACGGTAGTCATGGCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGATCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtaatgtaatattgtgggtgtgagtgtggaaaaagagttggtggcagtat Alignment from Pairagon GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAG-CATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG ttccagttttctaccttgcaaaaagacacacgtctccactttccctgtagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCAGTTCAGCACGGTAGTCATGGCC-TAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGATCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtaatgtaatattgtgggtgtgagtgtggaaaaagagttggtggcagtat Alignment from Exonerate_protein2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG ttccagttttctaccttgcaaaaagacacacgtctccactttccctgtagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCAGTTCAGCACGGTAGTCATGGCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGATCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtaatgtaatattgtgggtgtgagtgtggaaaaagagttggtggcagtat Alignment from Exonerate_coding2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG ttccagttttctaccttgcaaaaagacacacgtctccactttccctgtagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCAGTTCAGCACGGTAGTCATGGCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGATCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtaatgtaatattgtgggtgtgagtgtggaaaaagagttggtggcagtat Alignment from GeneWise GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG ttccagttttctaccttgcaaaaagacacacgtctccactttccctgtagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCCGAACCAGTTCAGCACGGTAGTCATGGCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGATCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtaatgtaatattgtgggtgtgagtgtggaaaaagagttggtggcagtat #### Exosc1_ID8332_7 --> 0 - 1 Original Alignment ATCTCCCTAGGCGATGCACAGTCCAATTAC-CTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAg taatggttgtctaagaagggtcaaaaacattctttttttttccctatcagATATCGCTAGGGGCTGCACAGTCCAATTATCCTGT-AACCACCGCTGCTGAAAATGAGCTGGGTGTTGTAGTGGCCCACAGTGAGTCAggtatgctagtgactaaatttgctgtcccaggaaggtgggtaacaaaccat Alignment from CESAR ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAg taatggttgtctaagaagggtcaaaaacattctttttttttccctatcagATATCGCTAGGGGCTGCACAGTCCAATTATCCTGTAACCACCGCTGCTGAAAATGAGCTGGGTGTTGTAGTGGCCCACAGTGAGTCAggtatgctagtgactaaatttgctgtcccaggaaggtgggtaacaaaccat Alignment from Spaln_aa2Genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggtcaaaaacattctttttttttccctatcagATATCGCTAGGGGCTGCACAGTCCAATTATCCTGTAACCACCGCTGCTGAAAATGAGCTGGGTGTTGTAGTGGCCCACAGTGAGTCAGgtatgctagtgactaaatttgctgtcccaggaaggtgggtaacaaaccat Alignment from Spaln_nt2Genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTAC---TGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggtcaaaaacattctttttttttccctatcagATATCGCTAGGGGCTGCACAGTCCAATTATCCTGTAACCACCGCTGCTGAAAATGAGCTGGGTGTTGTAGTGGCCCACAGTGAGTCAGgtatgctagtgactaaatttgctgtcccaggaaggtgggtaacaaaccat Alignment from Pairagon ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTA---CTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggtcaaaaacattctttttttttccctatcagATATCGCTAGGGGCTGCACAGTCCAATTATCCTGTAACCACCGCTGCTGAAAATGAGCTGGGTGTTGTAGTGGCCCACAGTGAGTCAGgtatgctagtgactaaatttgctgtcccaggaaggtgggtaacaaaccat Alignment from Exonerate_protein2genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggtcaaaaacattctttttttttccctatcagATATCGCTAGGGGCTGCACAGTCCAATTATCCTGTAACCACCGCTGCTGAAAATGAGCTGGGTGTTGTAGTGGCCCACAGTGAGTCAGgtatgctagtgactaaatttgctgtcccaggaaggtgggtaacaaaccat Alignment from Exonerate_coding2genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggtcaaaaacattctttttttttccctatcagATATCGCTAGGGGCTGCACAGTCCAATTATCCTGTAACCACCGCTGCTGAAAATGAGCTGGGTGTTGTAGTGGCCCACAGTGAGTCAGgtatgctagtgactaaatttgctgtcccaggaaggtgggtaacaaaccat Alignment from GeneWise ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCT---GAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggtcaaaaacattctttttttttccctatcagATATCGCTAGGGGCTGCACAGTCCAATTATCCTGTAACCACCGCTGCTGAAAATGAGCTGGGTGTTGTAGTGGCCCACAGTGAGTCAGgtatgctagtgactaaatttgctgtcccaggaaggtgggtaacaaaccat #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAG-ACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgaatgcgatacttgttcttgcaggtGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATATCTTCATCATTGGCTGGCTGTCCTATGAAGCACCA-CAAGAATGGTGCAgtaagtaaggaggctccctagacggtgttcactcctccccgtgagctgta Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgaatgcgatacttgttcttgcaggtGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATATCTTCATCATTGGCTGGCTGTCCTATGAAGCACCACAAGAATGGTGCAgtaagtaaggaggctccctagacggtgttcactcctccccgtgagctgta Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgaatgcgatacttgttcttgcagGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATATCTTCATCATTGGCTGGCTGTCCTATGAAGCACCACAAGAATGGTGCAgtaagtaaggaggctccctagacggtgttcactcctccccgtgagctgta Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgaatgcgatacttgttcttgcagGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATATCTTCATCATTGGCTGGCTGTCCTATGAAGCACCACAAGAATGGTGCAgtaagtaaggaggctccctagacggtgttcactcctccccgtgagctgta Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgaatgcgatacttgttcttgcagGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATATCTTCATCATTGGCTGGCTGTCCTATGAAGCACCACAAGAATGGTGCAgtaagtaaggaggctccctagacggtgttcactcctccccgtgagctgta Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgaatgcgatacttgttcttgcagGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATATCTTCATCATTGGCTGGCTGTCCTATGAAGCACCACAAGAATGGTGCAgtaagtaaggaggctccctagacggtgttcactcctccccgtgagctgta Alignment from Exonerate_coding2genome ATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgaatgcgatacttgttCTTGCAGGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATATCTTCATCATTGGCTGGCTGTCCTATGAAGCACCACAAGAATGGTGCAgtaagtaaggaggctccctagacggtgttcactcctccccgtgagctgta Alignment from GeneWise GCACCACCGGTGAGGTACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG atgtgttgcaggcaacttgaat---------GCGATACTTGTTCTTGCAGGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATATCTTCATCATTGGCTGGCTGTCCTATGAAGCACCACAAGAATGGTGCAgtaagtaaggaggctccctagacggtgttcactcctccccgtgagctgta #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTG-ACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaaccttgttaatagctctgctcctttttcctgtgatttccatctcacaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGA-GAACCATATCTCCATGCACATTGATCCAGATAGGAATGTGGATTGGGTCTCGACCCAGgtcagttatagtctacccagctgtgaaactcgagagttcagatcatgaat Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaaccttgttaatagctctgctcctttttcctgtgatttccatctcacaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGAGAACCATATCTCCATGCACATTGATCCAGATAGGAATGTGGATTGGGTCTCGACCCAGgtcagttatagtctacccagctgtgaaactcgagagttcagatcatgaat Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaaccttgttaatagctctgctcctttttcctgtgatttccatctcacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGAGAACCATATCTCCATGCACATTGATCCAGATAGGAATGTGGATTGGGTCTCGACCCAGgtcagttatagtctacccagctgtgaaactcgagagttcagatcatgaat Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaaccttgttaatagctctgctcctttttcctgtgatttccatctcacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGAGAACCATATCTCCATGCACATTGATCCAGATAGGAATGTGGATTGGGTCTCGACCCAGgtcagttatagtctacccagctgtgaaactcgagagttcagatcatgaat Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTG-ACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaaccttgttaatagctctgctcctttttcctgtgatttccatctcacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGA-GAACCATATCTCCATGCACATTGATCCAGATAGGAATGTGGATTGGGTCTCGACCCAGgtcagttatagtctacccagctgtgaaactcgagagttcagatcatgaat Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaaccttgttaatagctctgctcctttttcctgtgatttccatctcacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGAGAACCATATCTCCATGCACATTGATCCAGATAGGAATGTGGATTGGGTCTCGACCCAGgtcagttatagtctacccagctgtgaaactcgagagttcagatcatgaat Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaaccttgttaatagctctgctcctttttcctgtgatttccatctcacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGAGAACCATATCTCCATGCACATTGATCCAGATAGGAATGTGGATTGGGTCTCGACCCAGgtcagttatagtctacccagctgtgaaactcgagagttcagatcatgaat Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaaccttgttaatagctctgctcctttttcctgtgatttccatctcacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGAGAACCATATCTCCATGCACATTGATCCAGATAGGAATGTGGATTGGGTCTCGACCCAGgtcagttatagtctacccagctgtgaaactcgagagttcagatcatgaat #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAAC-GTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaattttgttcaaattctacattcacagCTGCAGGCAACATGCAATCGTTCACC-ATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACcagccagttgatacttccaggaaacatggatggcacagggagaaggtgaggc Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaattttgttcaaattctacattcacagCTGCAGGCAACATGCAATCGTTCACCATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACcagccagttgatacttccaggaaacatggatggcacagggagaaggtgaggc Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttgttcaaattctacattcacagCTGCAGGCAACATGCAATCGTTCACCATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgccagttgatacttccaggaaacatggatggcacagggagaaggtgaggc Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttgttcaaattctacattcacagCTGCAGGCAACATGCAATCGTTCACCATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgccagttgatacttccaggaaacatggatggcacagggagaaggtgaggc Alignment from Pairagon CTGCAGGCAACCTGCAA-CGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttgttcaaattctacattcacagCTGCAGGCAACATGCAATCGTTCACC-ATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgccagttgatacttccaggaaacatggatggcacagggagaaggtgaggc Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttgttcaaattctacattcacagCTGCAGGCAACATGCAATCGTTCACCATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgccagttgatacttccaggaaacatggatggcacagggagaaggtgaggc Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttgttcaaattctacattcacagCTGCAGGCAACATGCAATCGTTCACCATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgccagttgatacttccaggaaacatggatggcacagggagaaggtgaggc Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCACCTC tgatccctacactgatacatggaaattttgttcaaattctacattcacagCTGCAGGCAACATGCAATCGTTCACCATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAGCCAgttgatacttccaggaaacatggatggcacagggagaaggtgaggc #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTG-CTCCTCTTTGTTGCTGTCag tttctgggcccttaggtccccagacaacgatttacacctgttaccacaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTACATCC-CTTTGTCGTTGTGcggtgagttgcaacatgctgggcaccaaatctatttaagtcctttggactta Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag tttctgggcccttaggtccccagacaacgatttacacctgttaccacaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTACATCCCTTTGTCGTTGTGcggtgagttgcaacatgctgggcaccaaatctatttaagtcctttggactta Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccttaggtccccagacaacgatttacacctgttaccacaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgcaacatgctgggcaccaaatctatttaagtcctttggactta Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccttaggtccccagacaacgatttacacctgttaccacaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgcaacatgctgggcaccaaatctatttaagtcctttggactta Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccttaggtccccagacaacgatttacacctgttaccacaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgcaacatgctgggcaccaaatctatttaagtcctttggactta Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccttaggtccccagacaacgatttacacctgttaccacaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgcaacatgctgggcaccaaatctatttaagtcctttggactta Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccttaggtccccagacaacgatttacacctgttaccacaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgcaacatgctgggcaccaaatctatttaagtcctttggactta Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccttaggtccccagacaacgatttacacctgttaccacaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgcaacatgctgggcaccaaatctatttaagtcctttggactta #### Fads3_ID2668_11 --> 1 - 2 Original Alignment cCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGC-CTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCgg caagataacatcgttatgggggattcacaccagggcctctctgtgcctagcCTTGTTCCTACTATGTCTAGGCACAACTACCGGAGAGTGGCCCCCCTTGTCGAGGCATTCTGTGCTACACATGGACCTACACC-TGAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTgggtctgttgatgtttggagccaagcaacctgggtccaacttggtaagtatt Alignment from CESAR cCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCgg caagataacatcgttatgggggattcacaccagggcctctctgtgcctagcCTTGTTCCTACTATGTCTAGGCACAACTACCGGAGAGTGGCCCCCCTTGTCGAGGCATTCTGTGCTACACATGGACCTACACCTGAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTgggtctgttgatgtttggagccaagcaacctgggtccaacttggtaagtatt Alignment from Spaln_aa2Genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcgttatgggggattcacaccagggcctctctgtgcctagCCTTGTTCCTACTATGTCTAGGCACAACTACCGGAGAGTGGCCCCCCTTGTCGAGGCATTCTGTGCTACACATGGACCTACACCTGAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtctgttgatgtttggagccaagcaacctgggtccaacttggtaagtatt Alignment from Spaln_nt2Genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGG-CCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcgttatgggggattcacaccagggcctctctgtgcctagCCTTGTTCCTACTATGTCTAGGCACAACTACCGGAGAGTGGCCCCCCTTGTCGAGGCATTCTGTGCTACACATGGACCTACAC-CTGAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtctgttgatgtttggagccaagcaacctgggtccaacttggtaagtatt Alignment from Pairagon CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGG-CCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGGGTCC caagataacatcgttatgggggattcacaccagggcctctctgtgcctagCCTTGTTCCTACTATGTCTAGGCACAACTACCGGAGAGTGGCCCCCCTTGTCGAGGCATTCTGTGCTACACATGGACCTACACC-TGAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGGTCTgttgatgtttggagccaagcaacctgggtccaacttggtaagtatt Alignment from Exonerate_protein2genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcgttatgggggattcacaccagggcctctctgtgcctagCCTTGTTCCTACTATGTCTAGGCACAACTACCGGAGAGTGGCCCCCCTTGTCGAGGCATTCTGTGCTACACATGGACCTACACCTGAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtctgttgatgtttggagccaagcaacctgggtccaacttggtaagtatt Alignment from Exonerate_coding2genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcgttatgggggattcacaccagggcctctctgtgcctagCCTTGTTCCTACTATGTCTAGGCACAACTACCGGAGAGTGGCCCCCCTTGTCGAGGCATTCTGTGCTACACATGGACCTACACCTGAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtctgttgatgtttggagccaagcaacctgggtccaacttggtaagtatt Alignment from GeneWise CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGGGTCCCTGAAGAAGTCTGGCGACATCTGGCTGGATGCATACCTCCATCAA caagataacatcgttatgggggattcacaccagggcctctctgtgcctagCCTTGTTCCTACTATGTCTAGGCACAACTACCGGAGAGTGGCCCCCCTTGTCGAGGCATTCTGTGCTACACATGGACCTACACCTGAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGGTCTGTT------------GATGTTTGGAGCCAAGCAACCTGGGTCCAAc #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGC-ACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg gtcatttatgctaaatctgacaatctccatccttctcattgatttcacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGCGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCCACTTGCCTAT-TGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTAGACCCCTTAGACATTGAAACAGTGGAGGCAGTAAACTGGgggtaagtatccatttgatagactgcttggacagtgactgcttggacagtga Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg gtcatttatgctaaatctgacaatctccatccttctcattgatttcacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGCGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCCACTTGCCTATTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTAGACCCCTTAGACATTGAAACAGTGGAGGCAGTAAACTGGgggtaagtatccatttgatagactgcttggacagtgactgcttggacagtga Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG gtcatttatgctaaatctgacaatctccatccttctcattgatttcacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGCGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCCACTTGCCTATTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTAGACCCCTTAGACATTGAAACAGTGGAGGCAGTAAACTGGGGgtaagtatccatttgatagactgcttggacagtgactgcttggacagtga Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG gtcatttatgctaaatctgacaatctccatccttctcattgatttcacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGCGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCCACTTGCCTATTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTAGACCCCTTAGACATTGAAACAGTGGAGGCAGTAAACTGGGGgtaagtatccatttgatagactgcttggacagtgactgcttggacagtga Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAG-CACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG gtcatttatgctaaatctgacaatctccatccttctcattgatttcacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGCGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCCACTTGCCTAT-TGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTAGACCCCTTAGACATTGAAACAGTGGAGGCAGTAAACTGGGGgtaagtatccatttgatagactgcttggacagtgactgcttggacagtga Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG gtcatttatgctaaatctgacaatctccatccttctcattgatttcacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGCGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCCACTTGCCTATTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTAGACCCCTTAGACATTGAAACAGTGGAGGCAGTAAACTGGGGgtaagtatccatttgatagactgcttggacagtgactgcttggacagtga Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG gtcatttatgctaaatctgacaatctccatccttctcattgatttcacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGCGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCCACTTGCCTATTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTAGACCCCTTAGACATTGAAACAGTGGAGGCAGTAAACTGGGGgtaagtatccatttgatagactgcttggacagtgactgcttggacagtga Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG gtcatttatgctaaatctgacaatctccatccttctcattgatttcacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGCGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCCACTTGCCTATTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTAGACCCCTTAGACATTGAAACAGTGGAGGCAGTAAACTGGGGgtaagtatccatttgatagactgcttggacagtgactgcttggacagtga #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTC-CCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tttttttcctttgtatctagttacaattagctcgctcttgacccttccaggTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCCAG-GAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagcagcttgatgttatcttcatagtgcttatgcacatcaagctgttc Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tttttttcctttgtatctagttacaattagctcgctcttgacccttccaggTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCCAGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagcagcttgatgttatcttcatagtgcttatgcacatcaagctgttc Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tttttttcctttgtatctagttacaattagctcgctcttgacccttccagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCCAGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagcagcttgatgttatcttcatagtgcttatgcacatcaagctgttc Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tttttttcctttgtatctagttacaattagctcgctcttgacccttccagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCCAGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagcagcttgatgttatcttcatagtgcttatgcacatcaagctgttc Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tttttttcctttgtatctagttacaattagctcgctcttgacccttccagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCCAGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagcagcttgatgttatcttcatagtgcttatgcacatcaagctgttc Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tttttttcctttgtatctagttacaattagctcgctcttgacccttccagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCCAGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagcagcttgatgttatcttcatagtgcttatgcacatcaagctgttc Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tttttttcctttgtatctagttacaattagctcgctcttgacccttccagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCCAGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagcagcttgatgttatcttcatagtgcttatgcacatcaagctgttc Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tttttttcctttgtatctagttacaattagctcgctcttgacccttccagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCCAGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagcagcttgatgttatcttcatagtgcttatgcacatcaagctgttc #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTC-GCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTCGCCA-AGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAacgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTCGCCAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAacgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTCGCCAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTCGCCAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTCGCCAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTCGCCAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTCGCCAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTCGCCAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTG-CTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tcttattggtacttgattcccttacagaatggacatccttgcccctgcagaTTCCTAGACCTGCCTTGGGAAGAATTGCTGCTCCTTCATGTCGTAAACTGGGTCCCACTTCACCAA---CCTCC-GCTGCAGCAGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCACTTGGCCAGGTTACGCCGCTTTGATGCTGCTCAGgtacagtggtaagcaggggtgctcttgtccttgcactgctgtgctcttgt Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tcttattggtacttgattcccttacagaatggacatccttgcccctgcagaTTCCTAGACCTGCCTTGGGAAGAATTGCTGCTCCTTCATGTCGTAAACTGGGTCCCACTTCACCAA---CCTCCGCTGCAGCAGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCACTTGGCCAGGTTACGCCGCTTTGATGCTGCTCAGgtacagtggtaagcaggggtgctcttgtccttgcactgctgtgctcttgt Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tcttattggtacttgattcccttacagaatggacatccttgcccctgcagATTCCTAGACCTGCCTTGGGAAGAATTGCTGCTCCTTCATGTCGTAAACTGGGTCCCACTTCACCAACCTCCG---CTGCAGCAGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCACTTGGCCAGGTTACGCCGCTTTGATGCTGCTCAGgtacagtggtaagcaggggtgctcttgtccttgcactgctgtgctcttgt Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tcttattggtacttgattcccttacagaatggacatccttgcccctgcagATTCCTAGACCTGCCTTGGGAAGAATTGCTGCTCCTTCATGTCGTAAACTGGGTCCCACTTCACCAAC--CTCC-GCTGCAGCAGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCACTTGGCCAGGTTACGCCGCTTTGATGCTGCTCAGgtacagtggtaagcaggggtgctcttgtccttgcactgctgtgctcttgt Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAGG------- tcttattggtacttgattcccttacagaatggacatccttgcccctgcagATTCCTAGACCTGCCTTGGGAAGAATTGCTGCTCCTTCATGTCGTAAACTGGGTCCCACTTCACCAAC--CTCC-GCTGCAGCAGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCACTTGGCCAGGTTACGCCGCTTTGATGCTGCTCAGGTACAGTGgtaagcaggggtgctcttgtccttgcactgctgtgctcttgt Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tcttattggtacttgattcccttacagaatggacatccttgcccctgcagATTCCTAGACCTGCCTTGGGAAGAATTGCTGCTCCTTCATGTCGTAAACTGGGTCCCACTTCACCAA---CCTCCGCTGCAGCAGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCACTTGGCCAGGTTACGCCGCTTTGATGCTGCTCAGgtacagtggtaagcaggggtgctcttgtccttgcactgctgtgctcttgt Alignment from Exonerate_coding2genome tcttattggtacttgattcccttacagaatggacatccttgcccctgcagattcctagacctgccttgggaagaattgctgctccttcatgtcgtaaactgggtcccacttcaccaacctccgctgcagcaggtgagtagaacttttggggcacttgttcagttgcacttggccaggttacgccgctttgatgctgctcaggtacagtggtaagcaggggtgctcttgtccttgcactgctgtgctcttgt Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tcttattggtacttgattcccttacagaatggacatccttgcccctgcagATTCCTAGACCTGCCTTGGGAAGAATTGCTGCTCCTTCATGTCGTAAACTGGGTCCCACTTCACCAACCT---CCGCTGCAGCAGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCACTTGGCCAGGTTACGCCGCTTTGATGCTGCTCAGgtacagtggtaagcaggggtgctcttgtccttgcactgctgtgctcttgt #### Fgf8_ID9567_2 --> 1 - 0 Original Alignment gCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagaCTTTTACAATTGTTACGTTT-TTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from CESAR gCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagaCTTTTACAATTGTTACGTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Spaln_aa2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagACTTTTACAATTGTTACGTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Spaln_nt2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagACTTTTACAATTGTTACGTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Pairagon accgttctgctttttgggccacattttgtcatcatgatgttttctttcagacttttacaattgttacgtttttgcctccaggcacaagtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Exonerate_protein2genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagACTTTTACAATTGTTACGTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Exonerate_coding2genome accgttctgctttttgggccacattttgtcatcatgatgttttctttcagacttttacaattgttacgtttttgcctccaggcacaagtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from GeneWise accgttctgctttttgggccacattttgtcatcatgatgttttctttcagacttttacaattgttacgtttttgcctccaggcacaagtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTT-GAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagcataagagagataaagagcatagcctgctttttctctttggcagaGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTCGAAACTGGGA-AAAAAGGCTGCAGCACCTGAGCTTTGAGGCCTTTGCCTTCCGCGCAGAACTTATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtatccaaactcctgctccataccactcatggctcttatcctgcccagtt Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagcataagagagataaagagcatagcctgctttttctctttggcagaGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTCGAAACTGGGAAAAAAGGCTGCAGCACCTGAGCTTTGAGGCCTTTGCCTTCCGCGCAGAACTTATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtatccaaactcctgctccataccactcatggctcttatcctgcccagtt Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagagcatagcctgctttttctctttggcagAGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTCGAAACTGGGAAAAAAGGCTGCAGCACCTGAGCTTTGAGGCCTTTGCCTTCCGCGCAGAACTTATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtatccaaactcctgctccataccactcatggctcttatcctgcccagtt Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTT-GAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagagcatagcctgctttttctctttggcagAGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTCGAAACTGGGAA-AAAAGGCTGCAGCACCTGAGCTTTGAGGCCTTTGCCTTCCGCGCAGAACTTATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtatccaaactcctgctccataccactcatggctcttatcctgcccagtt Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTT-GAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagagcatagcctgctttttctctttggcagAGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTCGAAACTGGGAA-AAAAGGCTGCAGCACCTGAGCTTTGAGGCCTTTGCCTTCCGCGCAGAACTTATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtatccaaactcctgctccataccactcatggctcttatcctgcccagtt Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagagcatagcctgctttttctctttggcagAGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTCGAAACTGGGAAAAAAGGCTGCAGCACCTGAGCTTTGAGGCCTTTGCCTTCCGCGCAGAACTTATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtatccaaactcctgctccataccactcatggctcttatcctgcccagtt Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagagcatagcctgctttttctctttggcagAGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTCGAAACTGGGAAAAAAGGCTGCAGCACCTGAGCTTTGAGGCCTTTGCCTTCCGCGCAGAACTTATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtatccaaactcctgctccataccactcatggctcttatcctgcccagtt Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagagcatagcctgctttttctctttggcagAGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTCGAAACTGGGAAAAAAGGCTGCAGCACCTGAGCTTTGAGGCCTTTGCCTTCCGCGCAGAACTTATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtatccaaactcctgctccataccactcatggctcttatcctgcccagtt #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCT-GAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaaaccttgtcactgtctcagcagcCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTCGAGA-GGAATCCAACTTCAAGgtgagattgctcggcattcatagtcccctggttagatcactgagcacctt Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaaaccttgtcactgtctcagcagcCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTCGAGAGGAATCCAACTTCAAGgtgagattgctcggcattcatagtcccctggttagatcactgagcacctt Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaaaccttgtcactgtctcagcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTCGAGAGGAATCCAACTTCAAGgtgagattgctcggcattcatagtcccctggttagatcactgagcacctt Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaaaccttgtcactgtctcagcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTCGAGAGGAATCCAACTTCAAGgtgagattgctcggcattcatagtcccctggttagatcactgagcacctt Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaaaccttgtcactgtctcagcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTCGAGAGGAATCCAACTTCAAGgtgagattgctcggcattcatagtcccctggttagatcactgagcacctt Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaaaccttgtcactgtctcagcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTCGAGAGGAATCCAACTTCAAGgtgagattgctcggcattcatagtcccctggttagatcactgagcacctt Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaaaccttgtcactgtctcagcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTCGAGAGGAATCCAACTTCAAGgtgagattgctcggcattcatagtcccctggttagatcactgagcacctt Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaaaccttgtcactgtctcagcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTCGAGAGGAATCCAACTTCAAGgtgagattgctcggcattcatagtcccctggttagatcactgagcacctt #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTG-CGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg gagtgtgttgtagtaactttttggtgaagactgtagcttttttctttcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCCAGCTTTTTC-TAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCcggtgagtagaaggggtagacatatttgctagcttgtttggtctagtttaat Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg gagtgtgttgtagtaactttttggtgaagactgtagcttttttctttcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCCAGCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCcggtgagtagaaggggtagacatatttgctagcttgtttggtctagtttaat Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG gagtgtgttgtagtaactttttggtgaagactgtagcttttttctttcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCCAGCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtgagtagaaggggtagacatatttgctagcttgtttggtctagtttaat Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG gagtgtgttgtagtaactttttggtgaagactgtagcttttttctttcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCCAGCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtgagtagaaggggtagacatatttgctagcttgtttggtctagtttaat Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGT-GCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG gagtgtgttgtagtaactttttggtgaagactgtagcttttttctttcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCCAGCTTTTTCT-AGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtgagtagaaggggtagacatatttgctagcttgtttggtctagtttaat Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG gagtgtgttgtagtaactttttggtgaagactgtagcttttttctttcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCCAGCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtgagtagaaggggtagacatatttgctagcttgtttggtctagtttaat Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG gagtgtgttgtagtaactttttggtgaagactgtagcttttttctttcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCCAGCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtgagtagaaggggtagacatatttgctagcttgtttggtctagtttaat Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG gagtgtgttgtagtaactttttggtgaagactgtagcttttttctttcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCCAGCTTTTTCTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtgagtagaaggggtagacatatttgctagcttgtttggtctagtttaat #### Frmd8_ID1284_4 --> 2 - 0 Original Alignment atGAGCCTTCCCTTCAG-TTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagatGAACCTTCCCTTCACCTTCCGAAGGA-CGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from CESAR atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagatGAACCTTCCCTTCACCTTCCGAAGGACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Spaln_aa2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACCTTCCGAAGGACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Spaln_nt2Genome ATGAGCCTTCCCTTCAG-TTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACCTTCCGAAGG-ACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Pairagon ATGAGCCTTCCCTTCA-GTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACCTTCCGAAGG-ACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Exonerate_protein2genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACCTTCCGAAGGACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Exonerate_coding2genome GTCGCCATGGATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattCTATCTTCAGATGAACCTTCCCTTCACCTTCCGAAGGACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from GeneWise ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACCTTCCGAAGGACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg #### Ganab_ID2467_6 --> 1 - 2 Original Alignment tTTCTCGGATAAAGTTAGTCTC-GCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTag tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagtTTCTCAGATAAAGTTAGCCTGCACACTCGGCA-TGTGTGGGATAAGATCAAGAACCTTTTTTCCaggttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from CESAR tTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTag tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagtTTCTCAGATAAAGTTAGCCTGCACACTCGGCATGTGTGGGATAAGATCAAGAACCTTTTTTCCaggttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Spaln_aa2Genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGCACACTCGGCATGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Spaln_nt2Genome TTTCTCGGATAAAGTTAGTCT-CGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGCACACTCGGCA-TGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Pairagon TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGC-----------GTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCT-----------GCACACTCGGCATGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Exonerate_protein2genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGCACACTCGGCATGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Exonerate_coding2genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGCACACTCGGCATGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from GeneWise TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGCACACTCGGCATGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAGGAAAAGGCTGAG-AAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggagtggagggtgcaagttggtatgaatggtcctctggtttgtgttttagCCAGAGGAGACCCAAGAAAAGGCTGAGCAAGGATG-GCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtgagtaattggcaagccttaatactaatgttggaattgtctgctcttag Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggagtggagggtgcaagttggtatgaatggtcctctggtttgtgttttagCCAGAGGAGACCCAAGAAAAGGCTGAGCAAGGATGGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtgagtaattggcaagccttaatactaatgttggaattgtctgctcttag Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagttggtatgaatggtcctctggtttgtgttttagCCAGAGGAGACCCAAGAAAAGGCTGAGCAAGGATGGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtaattggcaagccttaatactaatgttggaattgtctgctcttag Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagttggtatgaatggtcctctggtttgtgttttagCCAGAGGAGACCCAAGAAAAGGCTGAGCAAGGATGGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtaattggcaagccttaatactaatgttggaattgtctgctcttag Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAG-AAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagttggtatgaatggtcctctggtttgtgttttagCCAGAGGAGACCCAAGAAAAGGCTGAGCAAGGATG-GCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtaattggcaagccttaatactaatgttggaattgtctgctcttag Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagttggtatgaatggtcctctggtttgtgttttagCCAGAGGAGACCCAAGAAAAGGCTGAGCAAGGATGGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtaattggcaagccttaatactaatgttggaattgtctgctcttag Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagttggtatgaatggtcctctggtttgtgttttagCCAGAGGAGACCCAAGAAAAGGCTGAGCAAGGATGGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtaattggcaagccttaatactaatgttggaattgtctgctcttag Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagttggtatgaatggtcctctggtttgtgttttagCCAGAGGAGACCCAAGAAAAGGCTGAGCAAGGATGGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtaattggcaagccttaatactaatgttggaattgtctgctcttag #### Ganab_ID2471_10 --> 1 - 0 Original Alignment gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCAT-CGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCCGAG-CCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from CESAR gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCCGAGCCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from Spaln_aa2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCCGAGCCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from Spaln_nt2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTG---TCCTGGCACACAGCTTTCATCCGAGCCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACAC------AAAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from Pairagon GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTG---TCCTGGCACACAGCTTTCATCCGAGCCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACAC------AAAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from Exonerate_protein2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCCGAGCCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from Exonerate_coding2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCCGAGCCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from GeneWise GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACG----------------------------------------------------- atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTCCTG---GCACACAGCTTTCATCCGAGCCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACAAAGGTAACACATGGGTATGTGAGACTTGGGGTCTGTCTTAGACATCCCATCAT #### Ganab_ID2472_11 --> 0 - 1 Original Alignment ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGG-GAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg ttggggtctgtcttagacatcccatcataagttgcttttcttatgctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGCGAGACTC-CCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAggttcgtatgtttttcttccttacaaattaagtaataaagtatttatactt Alignment from CESAR ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg ttggggtctgtcttagacatcccatcataagttgcttttcttatgctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGCGAGACTCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAggttcgtatgtttttcttccttacaaattaagtaataaagtatttatactt Alignment from Spaln_aa2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttggggtctgtcttagacatcccatcataagttgcttttcttatgctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGCGAGACTCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgttcgtatgtttttcttccttacaaattaagtaataaagtatttatactt Alignment from Spaln_nt2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttggggtctgtcttagacatcccatcataagttgcttttcttatgctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGCGAGACTCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgttcgtatgtttttcttccttacaaattaagtaataaagtatttatactt Alignment from Pairagon ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGG-GAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttggggtctgtcttagacatcccatcataagttgcttttcttatgctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGCGAGACTCC-CAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgttcgtatgtttttcttccttacaaattaagtaataaagtatttatactt Alignment from Exonerate_protein2genome GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttggggtctgtcttagacatcccatcataagttgcttttcttatGCTCAGACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGCGAGACTCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgttcgtatgtttttcttccttacaaattaagtaataaagtatttatactt Alignment from Exonerate_coding2genome GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttggggtctgtcttagacatcccatcataagttgcttttcttatGCTCAGACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGCGAGACTCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgttcgtatgtttttcttccttacaaattaagtaataaagtatttatactt Alignment from GeneWise --------------------------------------------GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG TTGGGGTCTGTCTTAGACATCCCATCATAAGTTGCTTTTCTTATGCTCAGACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGCGAGACTCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgttcgtatgtttttcttccttacaaattaagtaataaagtatttatactt #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATG-TGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg cacccctccagcagcgtctactattttgtgaatttcattgcctctaacaggaGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTATCCATATGCTGCCTCAGCT-GGCATTGGTGGGGCTTTCCTTCTGTGGAggtaagagcagtaatcatctggggtcttgcaatggatgcgtgtggttggta Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg cacccctccagcagcgtctactattttgtgaatttcattgcctctaacaggaGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTATCCATATGCTGCCTCAGCTGGCATTGGTGGGGCTTTCCTTCTGTGGAggtaagagcagtaatcatctggggtcttgcaatggatgcgtgtggttggta Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cacccctccagcagcgtctactattttgtgaatttcattgcctctaacagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTATCCATATGCTGCCTCAGCTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagagcagtaatcatctggggtcttgcaatggatgcgtgtggttggta Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cacccctccagcagcgtctactattttgtgaatttcattgcctctaacagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTATCCATATGCTGCCTCAGCTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagagcagtaatcatctggggtcttgcaatggatgcgtgtggttggta Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATG-TGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cacccctccagcagcgtctactattttgtgaatttcattgcctctaacagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTATCCATATGCTGCCTCAG-CTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagagcagtaatcatctggggtcttgcaatggatgcgtgtggttggta Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cacccctccagcagcgtctactattttgtgaatttcattgcctctaacagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTATCCATATGCTGCCTCAGCTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagagcagtaatcatctggggtcttgcaatggatgcgtgtggttggta Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cacccctccagcagcgtctactattttgtgaatttcattgcctctaacagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTATCCATATGCTGCCTCAGCTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagagcagtaatcatctggggtcttgcaatggatgcgtgtggttggta Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cacccctccagcagcgtctactattttgtgaatttcattgcctctaacagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTATCCATATGCTGCCTCAGCTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaagagcagtaatcatctggggtcttgcaatggatgcgtgtggttggta #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAG-AAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGCAAACATC-TGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGCAAACATCTGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGCAAACATCTGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGCAAACATCTGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAG-AAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGCAAACATC-TGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGCAAACATCTGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGCAAACATCTGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from GeneWise --------------------------------------------------GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT GGCAAATACATAGGTGCCTTAGGAGTGACTCTGGGCTTTCTTTTTCCCAGGTGTGGTATGATATTCAGAGCTATCAGCAAACATCTGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCT-CATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt cccacttgacagtatacaggtcacatagcagcctgttgtttattctgtagAATGCATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTACTGAGTTTCCATTCTC-AGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtgagtaacttaattattttattattactactctttaagtccatgctctg Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt cccacttgacagtatacaggtcacatagcagcctgttgtttattctgtagAATGCATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTACTGAGTTTCCATTCTCAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtgagtaacttaattattttattattactactctttaagtccatgctctg Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggtcacatagcagcctgttgtttattctgtagAATGCATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTACTGAGTTTCCATTCTCAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgagtaacttaattattttattattactactctttaagtccatgctctg Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggtcacatagcagcctgttgtttattctgtagAATGCATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTACTGAGTTTCCATTCTCAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgagtaacttaattattttattattactactctttaagtccatgctctg Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCT-CATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggtcacatagcagcctgttgtttattctgtagAATGCATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTACTGAGTTTCCATTCTCA-GCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgagtaacttaattattttattattactactctttaagtccatgctctg Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggtcacatagcagcctgttgtttattctgtagAATGCATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTACTGAGTTTCCATTCTCAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgagtaacttaattattttattattactactctttaagtccatgctctg Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggtcacatagcagcctgttgtttattctgtagAATGCATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTACTGAGTTTCCATTCTCAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgagtaacttaattattttattattactactctttaagtccatgctctg Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggtcacatagcagcctgttgtttattctgtagAATGCATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTACTGAGTTTCCATTCTCAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgagtaacttaattattttattattactactctttaagtccatgctctg #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTG-GCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg ccacccggccacaagctttatcagaatgcatgcttctggcttctttacagctGAAAGAGCAACCATTGATGGGAAATCCACAGGGGTGCGCCTTGG-TTCTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAAGAATCAGGTGACTCTAGCcgtgaggaaccagtacattcatcctgcttgaacccccagtcaatgttttac Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg ccacccggccacaagctttatcagaatgcatgcttctggcttctttacagctGAAAGAGCAACCATTGATGGGAAATCCACAGGGGTGCGCCTTGGTTCTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAAGAATCAGGTGACTCTAGCcgtgaggaaccagtacattcatcctgcttgaacccccagtcaatgttttac Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccggccacaagctttatcagaatgcatgcttctggcttctttacagCTGAAAGAGCAACCATTGATGGGAAATCCACAGGGGTGCGCCTTGGTTCTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAAGAATCAGGTGACTCTAGCCgtgaggaaccagtacattcatcctgcttgaacccccagtcaatgttttac Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccggccacaagctttatcagaatgcatgcttctggcttctttacagCTGAAAGAGCAACCATTGATGGGAAATCCACAGGGGTGCGCCTTGGTTCTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAAGAATCAGGTGACTCTAGCCgtgaggaaccagtacattcatcctgcttgaacccccagtcaatgttttac Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccggccacaagctttatcagaatgcatgcttctggcttctttacagCTGAAAGAGCAACCATTGATGGGAAATCCACAGGGGTGCGCCTTGGTTCTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAAGAATCAGGTGACTCTAGCCgtgaggaaccagtacattcatcctgcttgaacccccagtcaatgttttac Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccggccacaagctttatcagaatgcatgcttctggcttctttacagCTGAAAGAGCAACCATTGATGGGAAATCCACAGGGGTGCGCCTTGGTTCTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAAGAATCAGGTGACTCTAGCCgtgaggaaccagtacattcatcctgcttgaacccccagtcaatgttttac Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccggccacaagctttatcagaatgcatgcttctggcttctttacagCTGAAAGAGCAACCATTGATGGGAAATCCACAGGGGTGCGCCTTGGTTCTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAAGAATCAGGTGACTCTAGCCgtgaggaaccagtacattcatcctgcttgaacccccagtcaatgttttac Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccggccacaagctttatcagaatgcatgcttctggcttctttacagCTGAAAGAGCAACCATTGATGGGAAATCCACAGGGGTGCGCCTTGGTTCTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGACTATGGAAAGCCAGGGTGCAGAGACCTAGAAGAATCAGGTGACTCTAGCCgtgaggaaccagtacattcatcctgcttgaacccccagtcaatgttttac #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtgcatgtgtgttttctcccccagcaGACAAAAAGTTCACCAGGCAAGCCACCTC-ATATTCCTGTCTCCTGCCGGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaacctattcagctgtctccaatgctcacctgtctcagt Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtgcatgtgtgttttctcccccagcaGACAAAAAGTTCACCAGGCAAGCCACCTCATATTCCTGTCTCCTGCCGGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaacctattcagctgtctccaatgctcacctgtctcagt Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtgcatgtgtgttttctcccccagCAGACAAAAAGTTCACCAGGCAAGCCACCTCATATTCCTGTCTCCTGCCGGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaacctattcagctgtctccaatgctcacctgtctcagt Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtgcatgtgtgttttctcccccagCAGACAAAAAGTTCACCAGGCAAGCCACCTCATATTCCTGTCTCCTGCCGGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaacctattcagctgtctccaatgctcacctgtctcagt Alignment from Pairagon CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtgcatgtgtgttttctcccccagCAGACAAAAAGTTCACCAGGCAAGCCACCTC-ATATTCCTGTCTCCTGCCGGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaacctattcagctgtctccaatgctcacctgtctcagt Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtgcatgtgtgttttctcccccagCAGACAAAAAGTTCACCAGGCAAGCCACCTCATATTCCTGTCTCCTGCCGGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaacctattcagctgtctccaatgctcacctgtctcagt Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtgcatgtgtgttttctcccccagCAGACAAAAAGTTCACCAGGCAAGCCACCTCATATTCCTGTCTCCTGCCGGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaacctattcagctgtctccaatgctcacctgtctcagt Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtgcatgtgtgttttctcccccagCAGACAAAAAGTTCACCAGGCAAGCCACCTCATATTCCTGTCTCCTGCCGGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaacctattcagctgtctccaatgctcacctgtctcagt #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCAC-TATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcattttgttctattttgtgacaggAAGTGTGCCACAATCTCTGCCCACCTATGGCC-CAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatggaattaacaagtaaactagtcaggggctaatgctccacctcctcc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcattttgttctattttgtgacaggAAGTGTGCCACAATCTCTGCCCACCTATGGCCCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatggaattaacaagtaaactagtcaggggctaatgctccacctcctcc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcattttgttctattttgtgacagGAAGTGTGCCACAATCTCTGCCCACCTATGGCCCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatggaattaacaagtaaactagtcaggggctaatgctccacctcctcc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcattttgttctattttgtgacagGAAGTGTGCCACAATCTCTGCCCACCTATGGCCCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatggaattaacaagtaaactagtcaggggctaatgctccacctcctcc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCA-CTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcattttgttctattttgtgacagGAAGTGTGCCACAATCTCTGCCCACCTATGGCC-CAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatggaattaacaagtaaactagtcaggggctaatgctccacctcctcc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcattttgttctattttgtgacagGAAGTGTGCCACAATCTCTGCCCACCTATGGCCCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatggaattaacaagtaaactagtcaggggctaatgctccacctcctcc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcattttgttctattttgtgacagGAAGTGTGCCACAATCTCTGCCCACCTATGGCCCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatggaattaacaagtaaactagtcaggggctaatgctccacctcctcc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcattttgttctattttgtgacagGAAGTGTGCCACAATCTCTGCCCACCTATGGCCCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatggaattaacaagtaaactagtcaggggctaatgctccacctcctcc #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg gacttagcagttgttcccaggtagacgacagagcttctctttctttgcagGTAGAAGATTTTGTAGACCCCAATCGGCAAGA-CTCTTTACAACATAAGGAAATACCATCAAACcagtgagttttgattaatatgtgggccagagaagcagatattatcagttcta Alignment from CESAR GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg gacttagcagttgttcccaggtagacgacagagcttctctttctttgcagGTAGAAGATTTTGTAGACCCCAATCGGCAAGACTCTTTACAACATAAGGAAATACCATCAAACcagtgagttttgattaatatgtgggccagagaagcagatattatcagttcta Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcagttgttcccaggtagacgacagagcttctctttctttgcagGTAGAAGATTTTGTAGACCCCAATCGGCAAGACTCTTTACAACATAAGGAAATACCATCAAACCAgtgagttttgattaatatgtgggccagagaagcagatattatcagttcta Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcagttgttcccaggtagacgacagagcttctctttctttgcagGTAGAAGATTTTGTAGACCCCAATCGGCAAGACTCTTTACAACATAAGGAAATACCATCAAACCAgtgagttttgattaatatgtgggccagagaagcagatattatcagttcta Alignment from Pairagon GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcagttgttcccaggtagacgacagagcttctctttctttgcagGTAGAAGATTTTGTAGACCCCAATCGGCAAGA-CTCTTTACAACATAAGGAAATACCATCAAACCAgtgagttttgattaatatgtgggccagagaagcagatattatcagttcta Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcagttgttcccaggtagacgacagagcttctctttctttgcagGTAGAAGATTTTGTAGACCCCAATCGGCAAGACTCTTTACAACATAAGGAAATACCATCAAACCAgtgagttttgattaatatgtgggccagagaagcagatattatcagttcta Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcagttgttcccaggtagacgacagagcttctctttctttgcagGTAGAAGATTTTGTAGACCCCAATCGGCAAGACTCTTTACAACATAAGGAAATACCATCAAACCAgtgagttttgattaatatgtgggccagagaagcagatattatcagttcta Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG gacttagcagttgttcccaggtagacgacagagcttctctttctttgcagGTAGAAGATTTTGTAGACCCCAATCGGCAAGACTCTTTACAACATAAGGAAATACCATCAAACCAgtgagttttgattaatatgtgggccagagaagcagatattatcagttcta #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAG-CAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagaGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACCAGTCAA-TGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagaGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACCAGTCAATGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACCAGTCAATGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACCAGTCAATGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACCAGTCAATGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACCAGTCAATGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACCAGTCAATGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACCAGTCAATGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCT-GACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTCGATA-TTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATggtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTCGATATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATggtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTCGATATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTCGATATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTCGATATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTCGATATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTCGATATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTCGATATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTT-TTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCCTTAGAGA-TATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCCTTAGAGATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCCTTAGAGATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCCTTAGAGATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCCTTAGAGATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCCTTAGAGATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCCTTAGAGATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCCTTAGAGATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag #### Gldc_ID6401_14 --> 0 - 0 Original Alignment GGATCCTGCACCATG-AAGCTCAATAGCTCCTCCGAACTTGCA ggttgtaggaagtattgctgggtatgtcttgcattcccttttcccctcagGGATCTTGCACCATGCAAGC-TAATAGCTCAGCTGAGCTTGGTgtaggaccagtaattaccatatgatgtcatgctcacttcatgagtgcaag Alignment from CESAR GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggttgtaggaagtattgctgggtatgtcttgcattcccttttcccctcagGGATCTTGCACCATGCAAGCTAATAGCTCAGCTGAGCTTGGTgtaggaccagtaattaccatatgatgtcatgctcacttcatgagtgcaag Alignment from Spaln_aa2Genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggttgtaggaagtattgctgggtatgtcttgcattcccttttcccctcagGGATCTTGCACCATGCAAGCTAATAGCTCAGCTGAGCTTGGTgtaggaccagtaattaccatatgatgtcatgctcacttcatgagtgcaag Alignment from Spaln_nt2Genome GGATCCTGCACCATG-AAGCTCAATAGCTCCTCCGAACTTGCA ggttgtaggaagtattgctgggtatgtcttgcattcccttttcccctcagGGATCTTGCACCATGCAAGCT-AATAGCTCAGCTGAGCTTGGTgtaggaccagtaattaccatatgatgtcatgctcacttcatgagtgcaag Alignment from Pairagon GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggttgtaggaagtattgctgggtatgtcttgcattcccttttcccctcagGGATCTTGCACCATGCAAGCTAATAGCTCAGCTGAGCTTGGTgtaggaccagtaattaccatatgatgtcatgctcacttcatgagtgcaag Alignment from Exonerate_protein2genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggttgtaggaagtattgctgggtatgtcttgcattcccttttcccctcagGGATCTTGCACCATGCAAGCTAATAGCTCAGCTGAGCTTGGTgtaggaccagtaattaccatatgatgtcatgctcacttcatgagtgcaag Alignment from Exonerate_coding2genome ggttgtaggaagtattgctgggtatgtcttgcattcccttttcccctcagggatcttgcaccatgcaagctaatagctcagctgagcttggtgtaggaccagtaattaccatatgatgtcatgctcacttcatgagtgcaag Alignment from GeneWise GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggttgtaggaagtattgctgggtatgtcttgcattcccttttcccctcagGGATCTTGCACCATGCAAGCTAATAGCTCAGCTGAGCTTGGTgtaggaccagtaattaccatatgatgtcatgctcacttcatgagtgcaag #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggattagcttaactccgtgtttactttgctgtttttcccacgcagtTACCACTCAGAAACTAATCTTCGTTCCTT-CATGAAGAGATTGGAGAACCAAGATATTTCCCTTCTACACAGTATGATTCCTCTAgtacaggcagcatgactggttaccatgtacattggtatgtatcaggtgtg Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggattagcttaactccgtgtttactttgctgtttttcccacgcagtTACCACTCAGAAACTAATCTTCGTTCCTTCATGAAGAGATTGGAGAACCAAGATATTTCCCTTCTACACAGTATGATTCCTCTAgtacaggcagcatgactggttaccatgtacattggtatgtatcaggtgtg Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggattagcttaactccgtgtttactttgctgtttttcccacgcagTTACCACTCAGAAACTAATCTTCGTTCCTTCATGAAGAGATTGGAGAACCAAGATATTTCCCTTCTACACAGTATGATTCCTCTAgtacaggcagcatgactggttaccatgtacattggtatgtatcaggtgtg Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggattagcttaactccgtgtttactttgctgtttttcccacgcagTTACCACTCAGAAACTAATCTTCGTTCCTTCATGAAGAGATTGGAGAACCAAGATATTTCCCTTCTACACAGTATGATTCCTCTAgtacaggcagcatgactggttaccatgtacattggtatgtatcaggtgtg Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggattagcttaactccgtgtttactttgctgtttttcccacgcagTTACCACTCAGAAACTAATCTTCGTTCCTTCATGAAGAGATTGGAGAACCAAGATATTTCCCTTCTACACAGTATGATTCCTCTAgtacaggcagcatgactggttaccatgtacattggtatgtatcaggtgtg Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggattagcttaactccgtgtttactttgctgtttttcccacgcagTTACCACTCAGAAACTAATCTTCGTTCCTTCATGAAGAGATTGGAGAACCAAGATATTTCCCTTCTACACAGTATGATTCCTCTAgtacaggcagcatgactggttaccatgtacattggtatgtatcaggtgtg Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggattagcttaactccgtgtttactttgctgtttttcccacgcagTTACCACTCAGAAACTAATCTTCGTTCCTTCATGAAGAGATTGGAGAACCAAGATATTTCCCTTCTACACAGTATGATTCCTCTAgtacaggcagcatgactggttaccatgtacattggtatgtatcaggtgtg Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggattagcttaactccgtgtttactttgctgtttttcccacgcagTTACCACTCAGAAACTAATCTTCGTTCCTTCATGAAGAGATTGGAGAACCAAGATATTTCCCTTCTACACAGTATGATTCCTCTAgtacaggcagcatgactggttaccatgtacattggtatgtatcaggtgtg #### Gm815_ID5778_2 --> 0 - 1 Original Alignment TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCT-TCCCATACTTTTTTCCCCCACt cagctttttttgacaccacaccattttctgttcaggcctatctcttgcagTCCTTAGGGACTATGCTTCTATGT------------------------------------------------------------CTCAC-GACT------CACCACtgtaagtaaaaaagatgtacccataagcttagtaaagttgatgtggttatg Alignment from CESAR TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACt cagctttttttgacaccacaccattttctgttcaggcctatctcttgcagTCCTTAGGGACTATGCTTCTATGTCTC------------------------------ACG------------------------ACTCAC------------CACtgtaagtaaaaaagatgtacccataagcttagtaaagttgatgtggttatg Alignment from Spaln_aa2Genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCAT cagctttttttgacaccacaccattttctgttcaggcctatctcttgcagTCCTTAGGGACTATGCTTCTATGTCTCACGACTCACCACTGTAAgtaaaaaagatgtacccataagcttagtaaagttgatgtggttatg Alignment from Spaln_nt2Genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCAT cagctttttttgacaccacaccattttctgttcaggcctatctcttgcagTCCTTAGGGACTATGCTTCTATGTCTC----ACGACTCACCACTgtaagtaaaaaagatgtacccataagcttagtaaagttgatgtggttatg Alignment from Pairagon TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCC--------CCACT cagctttttttgacaccacaccattttctgttcaggcctatctcttgcagTCCTTAGGGACTATGCTTCTATG--------------------------------------------------------------------------TCTCACGACTCACCACTgtaagtaaaaaagatgtacccataagcttagtaaagttgatgtggttatg Alignment from Exonerate_protein2genome CTGTCTGAGTCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCAT cagctttttttgacaccacaccattttctgttcaggcctatCTCTTGCAGTCCTTAGGGACTATGCTTCTATGTCTCACGACTCACCACTGTAAgtaaaaaagatgtacccataagcttagtaaagttgatgtggttatg Alignment from Exonerate_coding2genome cagctttttttgacaccacaccattttctgttcaggcctatctcttgcagtccttagggactatgcttctatgtctcacgactcaccactgtaagtaaaaaagatgtacccataagcttagtaaagttgatgtggttatg Alignment from GeneWise cagctttttttgacaccacaccattttctgttcaggcctatctcttgcagtccttagggactatgcttctatgtctcacgactcaccactgtaagtaaaaaagatgtacccataagcttagtaaagttgatgtggttatg #### Gpam_ID11539_10 --> 0 - 0 Original Alignment GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGG-AAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTCAAAAACT-TGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from CESAR GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTCAAAAACTTGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Spaln_aa2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTCAAAAACTTGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Spaln_nt2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTCAAAAACTTGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Pairagon GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTCAAAAACTTGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Exonerate_protein2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTCAAAAACTTGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Exonerate_coding2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTCAAAAACTTGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from GeneWise GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTCAAAAACTTGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt #### Gpam_ID11543_6 --> 1 - 0 Original Alignment gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCAC-AAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtggccattctccggctatcatgatgcaggccttggcctctcacctctaggTTGACTGGCTGGGTATTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACCAAGG-TCAATTAGAGATGGTCAAGGCTGCCACCGAGgtaggatccgaatttaaaaacctaaaggaagatgtgcattactggatgtt Alignment from CESAR gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtggccattctccggctatcatgatgcaggccttggcctctcacctctaggTTGACTGGCTGGGTATTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACCAAGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtaggatccgaatttaaaaacctaaaggaagatgtgcattactggatgtt Alignment from Spaln_aa2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtggccattctccggctatcatgatgcaggccttggcctctcacctctagGTTGACTGGCTGGGTATTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACCAAGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtaggatccgaatttaaaaacctaaaggaagatgtgcattactggatgtt Alignment from Spaln_nt2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtggccattctccggctatcatgatgcaggccttggcctctcacctctagGTTGACTGGCTGGGTATTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACCAAGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtaggatccgaatttaaaaacctaaaggaagatgtgcattactggatgtt Alignment from Pairagon GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtggccattctccggctatcatgatgcaggccttggcctctcacctctagGTTGACTGGCTGGGTATTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACCAAGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtaggatccgaatttaaaaacctaaaggaagatgtgcattactggatgtt Alignment from Exonerate_protein2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtggccattctccggctatcatgatgcaggccttggcctctcacctctagGTTGACTGGCTGGGTATTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACCAAGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtaggatccgaatttaaaaacctaaaggaagatgtgcattactggatgtt Alignment from Exonerate_coding2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtggccattctccggctatcatgatgcaggccttggcctctcacctctagGTTGACTGGCTGGGTATTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACCAAGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtaggatccgaatttaaaaacctaaaggaagatgtgcattactggatgtt Alignment from GeneWise GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtggccattctccggctatcatgatgcaggccttggcctctcacctctagGTTGACTGGCTGGGTATTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACCAAGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtaggatccgaatttaaaaacctaaaggaagatgtgcattactggatgtt #### Gpha2_ID1505_2 --> 2 - 0 Original Alignment ccTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCT-TTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caaaatgataggtatcctagtttttcaattgttgttatttttatttctagcaTTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAGAATGTCAGGCATCCCAATTATCACAGGCCTGTGTGGGATACTGTGAGTCCAGTGCTCTTTCCCT-CCGGTATTCTGTATTGGTGGTCAGTGGTTATTGGCACAATACTACATCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtgctctgtgtctctgtgtcttcaaagttacactttggacacatat Alignment from CESAR ccTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caaaatgataggtatcctagtttttcaattgttgttatttttatttctagcaTTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAGAATGTCAGGCATCCCAATTATCACAGGCCTGTGTGGGATACTGTGAGTCCAGTGCTCTTTCCCTCCGGTATTCTGTATTGGTGGTCAGTGGTTATTGGCACAATACTACATCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtgctctgtgtctctgtgtcttcaaagttacactttggacacatat Alignment from Spaln_aa2Genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caaaatgataggtatcctagtttttcaattgttgttatttttatttctagCATTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAGAATGTCAGGCATCCCAATTATCACAGGCCTGTGTGGGATACTGTGAGTCCAGTGCTCTTTCCCTCCGGTATTCTGTATTGGTGGTCAGTGGTTATTGGCACAATACTACATCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtgctctgtgtctctgtgtcttcaaagttacactttggacacatat Alignment from Spaln_nt2Genome CCTTCAATGTGACGG---TGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caaaatgataggtatcctagtttttcaattgttgttatttttatttctagCATTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAGAATGTCAGGCATCCCAATTATCACAGGCCTGTGTGGGATACTGTGAGTCCAGTGCTCTTTCCCTCCGGTATTCTGTATTGGTGGTCAGTGGTTATTGGCACAATACTACATCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtgctctgtgtctctgtgtcttcaaagttacactttggacacatat Alignment from Pairagon CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caaaatgataggtatcctagtttttcaattgttgttatttttatttctagcattcaatattgcag------------CAGTGCATAGTGACCACCTTGGAGAATGTCAGGCATCCCAATTATCACAGGCCTGTGTGGGATACTGTGAGTCCAGTGCTCTTTCCCTCCGGTATTCTGTATTGGTGGTCAGTGGTTATTGGCACAATACTACATCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtgctctgtgtctctgtgtcttcaaagttacactttggacacatat Alignment from Exonerate_protein2genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caaaatgataggtatcctagtttttcaattgttgttatttttatttctagCATTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAGAATGTCAGGCATCCCAATTATCACAGGCCTGTGTGGGATACTGTGAGTCCAGTGCTCTTTCCCTCCGGTATTCTGTATTGGTGGTCAGTGGTTATTGGCACAATACTACATCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtgctctgtgtctctgtgtcttcaaagttacactttggacacatat Alignment from Exonerate_coding2genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caaaatgataggtatcctagtttttcaattgttgttatttttatttctagCATTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAGAATGTCAGGCATCCCAATTATCACAGGCCTGTGTGGGATACTGTGAGTCCAGTGCTCTTTCCCTCCGGTATTCTGTATTGGTGGTCAGTGGTTATTGGCACAATACTACATCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtgctctgtgtctctgtgtcttcaaagttacactttggacacatat Alignment from GeneWise CCTTCAATGTGACG---GTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caaaatgataggtatcctagtttttcaattgttgttatttttatttctagCATTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAGAATGTCAGGCATCCCAATTATCACAGGCCTGTGTGGGATACTGTGAGTCCAGTGCTCTTTCCCTCCGGTATTCTGTATTGGTGGTCAGTGGTTATTGGCACAATACTACATCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtgctctgtgtctctgtgtcttcaaagttacactttggacacatat #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGAATCCTC-AATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag aggttgtagtagaagggtggaacaccagtctctaaactctgcgtttacagAGCACCAGTCAAATCCTTCAATGGCCAAG-CTTTGGTTCCCGATCGTACTTCTTTGATAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTaggtaagaacccagctctttacccaaataggagaggcctaagtagaggcata Alignment from CESAR AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag aggttgtagtagaagggtggaacaccagtctctaaactctgcgtttacagAGCACCAGTCAAATCCTTCAATGGCCAAGCTTTGGTTCCCGATCGTACTTCTTTGATAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTaggtaagaacccagctctttacccaaataggagaggcctaagtagaggcata Alignment from Spaln_aa2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgtagtagaagggtggaacaccagtctctaaactctgcgtttacagAGCACCAGTCAAATCCTTCAATGGCCAAGCTTTGGTTCCCGATCGTACTTCTTTGATAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagaacccagctctttacccaaataggagaggcctaagtagaggcata Alignment from Spaln_nt2Genome AGCACCAGTCGAATCCT-CAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgtagtagaagggtggaacaccagtctctaaactctgcgtttacagAGCACCAGTCAAATCCTTCAATGGCCAAG-CTTTGGTTCCCGATCGTACTTCTTTGATAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagaacccagctctttacccaaataggagaggcctaagtagaggcata Alignment from Pairagon AGCACCAGTCGAATCC-TCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgtagtagaagggtggaacaccagtctctaaactctgcgtttacagAGCACCAGTCAAATCCTTCAATGGCCAAG-CTTTGGTTCCCGATCGTACTTCTTTGATAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagaacccagctctttacccaaataggagaggcctaagtagaggcata Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgtagtagaagggtggaacaccagtctctaaactctgcgtttacagAGCACCAGTCAAATCCTTCAATGGCCAAGCTTTGGTTCCCGATCGTACTTCTTTGATAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagaacccagctctttacccaaataggagaggcctaagtagaggcata Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgtagtagaagggtggaacaccagtctctaaactctgcgtttacagAGCACCAGTCAAATCCTTCAATGGCCAAGCTTTGGTTCCCGATCGTACTTCTTTGATAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagaacccagctctttacccaaataggagaggcctaagtagaggcata Alignment from GeneWise AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgtagtagaagggtggaacaccagtctctaaactctgcgtttacagAGCACCAGTCAAATCCTTCAATGGCCAAGCTTTGGTTCCCGATCGTACTTCTTTGATAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagaacccagctctttacccaaataggagaggcctaagtagaggcata #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGC-CGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaaactcgggaccccttgtctctacccccacctcctagGGAACAAGTGTATGTCAGGTGGCTGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCCGGGCCT-CTACAACCTGGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCGGACCAGgtgaagtacacattattctgggctgacaaggctgcacattagcaaatagg Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaaactcgggaccccttgtctctacccccacctcctagGGAACAAGTGTATGTCAGGTGGCTGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCCGGGCCTCTACAACCTGGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCGGACCAGgtgaagtacacattattctgggctgacaaggctgcacattagcaaatttt Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaaactcgggaccccttgtctctacccccacctcctagGGAACAAGTGTATGTCAGGTGGCTGCAATA---GGGCCCATGATCTTGATTTATGCCAGCCCGGGCCTCTACAACCTGGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCGGACCAGgtgaagtacacattattctgggctgacaaggctgcacattagcaaatagg Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaaactcgggaccccttgtctctacccccacctcctagGGAACAAGTGTATGTCAGGTGGCTGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCCGGGCCTCTACAACCTGGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCGGACCAGgtgaagtacacattattctgggctgacaaggctgcacattagcaaatagg Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaaactcgggaccccttgtctctacccccacctcctagGGAACAAGTGTATGTCAGGTGGCTGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCCGGGCCTCTACAACCTGGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCGGACCAGgtgaagtacacattattctgggctgacaaggctgcacattagcaaatagg Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaaactcgggaccccttgtctctacccccacctcctagGGAACAAGTGTATGTCAGGTGGCTGCAATA---GGGCCCATGATCTTGATTTATGCCAGCCCGGGCCTCTACAACCTGGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCGGACCAGgtgaagtacacattattctgggctgacaaggctgcacattagcaaatagg Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaaactcgggaccccttgtctctacccccacctcctagGGAACAAGTGTATGTCAGGTGGCTGCAATA---GGGCCCATGATCTTGATTTATGCCAGCCCGGGCCTCTACAACCTGGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCGGACCAGgtgaagtacacattattctgggctgacaaggctgcacattagcaaatagg Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaaactcgggaccccttgtctctacccccacctcctagGGAACAAGTGTATGTCAGGTGGCTGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCCGGGCCTCTACAACCTGGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCGGACCAGgtgaagtacacattattctgggctgacaaggctgcacattagcaaatagg #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCC-TGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggctatagccactgcagtgagggtgtcctctcccctcaccccaaccctaggCTGGCCGTTCAGGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTGAATGTACTGTGTGCAGTTCTGTCATGCCAGCGTCAACAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGT------GCTCTTGCTGGACTGCCTCTGCC-AGTAGCCCGTCGTGCCCCAACCACCAGTATCTACTTAGATGCAAAGgtaggagtgccatatagatgtggcattgttggatttgtggacagagtact Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTT---GTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggctatagccactgcagtgagggtgtcctctcccctcaccccaaccctaggCTGGCCGTTCAGGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTGAATGTACTGTGTGCAGTTCTGTCATGCCAGCGTCAACAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCTCTT---------GCTGGACTGCCTCTGCCAGTAGCCCGTCGTGCCCCAACCACCAGTATCTACTTAGATGCAAAGgtaggagtgccatatagatgtggcattgttggatttgtggacagagtact Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggctatagccactgcagtgagggtgtcctctcccctcaccccaaccctagGCTGGCCGTTCAGGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTGAATGTACTGTGTGCAGTTCTGTCATGCCAGCGTCAACAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCT------CTTGCTGGACTGCCTCTGCCAGTAGCCCGTCGTGCCCCAACCACCAGTATCTACTTAGATGCAAAGgtaggagtgccatatagatgtggcattgttggatttgtggacagagtact Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggctatagccactgcagtgagggtgtcctctcccctcaccccaaccctagGCTGGCCGTTCAGGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTGAATGTACTGTGTGCAGTTCTGTCATGCCAGCGTCAACAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTG--CTCTTGCT---GGACTGCCTCTGCC-AGTAGCCCGTCGTGCCCCAACCACCAGTATCTACTTAGATGCAAAGgtaggagtgccatatagatgtggcattgttggatttgtggacagagtact Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGC-CTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggctatagccactgcagtgagggtgtcctctcccctcaccccaaccctagGCTGGCCGTTCAGGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTGAATGTACTGTGTGCAGTTCTGTCATGCCAGCGTCAACAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCT------CTTGCTGGACTGCCTCTGCC-AGTAGCCCGTCGTGCCCCAACCACCAGTATCTACTTAGATGCAAAGgtaggagtgccatatagatgtggcattgttggatttgtggacagagtact Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggctatagccactgcagtgagggtgtcctctcccctcaccccaaccctagGCTGGCCGTTCAGGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTGAATGTACTGTGTGCAGTTCTGTCATGCCAGCGTCAACAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCT------CTTGCTGGACTGCCTCTGCCAGTAGCCCGTCGTGCCCCAACCACCAGTATCTACTTAGATGCAAAGgtaggagtgccatatagatgtggcattgttggatttgtggacagagtact Alignment from Exonerate_coding2genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTTGCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGC ggctatagccactgcagtgagggtgtcctctcccctcaccccaaccctaggctggccgttcagggtgcctttgtgggtgcttcattgctttttttattggtgAATGTACTGTGTGCAGTTCTGTCATGCCAGCGTCAACAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCTCTTGCTGGACTGCCTCTGCCAGTAGCCCGTCGTGCCCCAACCACCAGTATCTACTTAGATGCAAAGGTAGGAGTGCCATATAGATGTGGCATTGTTGGATTTGTGGACAGAGTACT Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggctatagccactgcagtgagggtgtcctctcccctcaccccaaccctagGCTGGCCGTTCAGGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTGAATGTACTGTGTGCAGTTCTGTCATGCCAGCGTCAACAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCTCTT------GCTGGACTGCCTCTGCCAGTAGCCCGTCGTGCCCCAACCACCAGTATCTACTTAGATGCAAAGgtaggagtgccatatagatgtggcattgttggatttgtggacagagtact #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTCAAGCGTC-ACCTGTAATGAGCCGGGGActgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from CESAR GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTCAAGCGTCACCTGTAATGAGCCGGGGActgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTCAAGCGTCACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTCAAGCGTC-ACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Pairagon GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAG-----------------ATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAA-----------------AGCTCAAGCGTCACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Exonerate_protein2genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTCAAGCGTCACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Exonerate_coding2genome aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctaggtggtatttaaggccaaagctcaagcgtcacctgtaatgagccggggactgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from GeneWise GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTCAAGCGTCACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAAT-CCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCCAGACT-TGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATtggtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCCAGACTTGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATtggtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCCAGACTTGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCCAGACTTGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCCAGACTTGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCCAGACTTGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCCAGACTTGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCCAGACTTGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGCGGAG-CCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from CESAR GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGCGGAGCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGCGGAGCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Spaln_nt2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGCGGAGCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Pairagon GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGCGGAGCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGCGGAGCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGCGGAGCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGCGGAGCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct #### Hoga1_ID8382_5 --> 0 - 1 Original Alignment GTGACCAGGATTGGACTGATA-GTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg taaatgtaatggggagaggaggatcattctcatttctcttttttgtgaagGTGACCAAGATTGGACTGATACGTTCATCACA-GTCTAGCAAGCAGGATTTTCAGGTACTGGCAGGGTCTGTTGGCTCCCTTCTAGCTAGCTATTCTGTAggtaacgttgctgtcagttctaaaccaccagctccaaccaagccctgttgc Alignment from CESAR GTGACCAGGATTGGACTGATA---GTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg taaatgtaatggggagaggaggatcattctcatttctcttttttgtgaagGTGACCAAGATTGGACTGATACGTTCATCACAGTCTAGCAAGCAGGATTTTCAGGTACTGGCAGGGTCTGTTGGCTCCCTTCTAGCTAGCTATTCTGTAggtaacgttgctgtcagttctaaaccaccagctccaaccaagccctgttgc Alignment from Spaln_aa2Genome GTGACCAGGATTGGACTGATA---GTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG taaatgtaatggggagaggaggatcattctcatttctcttttttgtgaagGTGACCAAGATTGGACTGATACGTTCATCACAGTCTAGCAAGCAGGATTTTCAGGTACTGGCAGGGTCTGTTGGCTCCCTTCTAGCTAGCTATTCTGTAGgtaacgttgctgtcagttctaaaccaccagctccaaccaagccctgttgc Alignment from Spaln_nt2Genome GTGACCAGGATTGGACTGATA-GTTCA-CA-AGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG taaatgtaatggggagaggaggatcattctcatttctcttttttgtgaagGTGACCAAGATTGGACTGATACGTTCATCACAGTCTAGCAAGCAGGATTTTCAGGTACTGGCAGGGTCTGTTGGCTCCCTTCTAGCTAGCTATTCTGTAGgtaacgttgctgtcagttctaaaccaccagctccaaccaagccctgttgc Alignment from Pairagon GTGACCAGGATTGGACTGATA-GTTCACAAGA--CCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG taaatgtaatggggagaggaggatcattctcatttctcttttttgtgaagGTGACCAAGATTGGACTGATACGTTCATCACAGTCTAGCAAGCAGGATTTTCAGGTACTGGCAGGGTCTGTTGGCTCCCTTCTAGCTAGCTATTCTGTAGgtaacgttgctgtcagttctaaaccaccagctccaaccaagccctgttgc Alignment from Exonerate_protein2genome GTGACCAGGATTGGACTGATA---GTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG taaatgtaatggggagaggaggatcattctcatttctcttttttgtgaagGTGACCAAGATTGGACTGATACGTTCATCACAGTCTAGCAAGCAGGATTTTCAGGTACTGGCAGGGTCTGTTGGCTCCCTTCTAGCTAGCTATTCTGTAGgtaacgttgctgtcagttctaaaccaccagctccaaccaagccctgttgc Alignment from Exonerate_coding2genome GTGACCAGGATTGGACTGATA---GTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG taaatgtaatggggagaggaggatcattctcatttctcttttttgtgaagGTGACCAAGATTGGACTGATACGTTCATCACAGTCTAGCAAGCAGGATTTTCAGGTACTGGCAGGGTCTGTTGGCTCCCTTCTAGCTAGCTATTCTGTAGgtaacgttgctgtcagttctaaaccaccagctccaaccaagccctgttgc Alignment from GeneWise GTGACCAGGATTGGACTGATA---GTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG taaatgtaatggggagaggaggatcattctcatttctcttttttgtgaagGTGACCAAGATTGGACTGATACGTTCATCACAGTCTAGCAAGCAGGATTTTCAGGTACTGGCAGGGTCTGTTGGCTCCCTTCTAGCTAGCTATTCTGTAGgtaacgttgctgtcagttctaaaccaccagctccaaccaagccctgttgc #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTGGACTGGAAGGAC-TTCCTGTTGGTGAAGAGCCGGAGA---AATGTCACCATGGTGtc agttagaggatgcaagtagttattgcacttttatttctgttctttgccaggGAGAGACTTTTGTACTGGAAGGATCTTTTCCT-GGTGAATAGCTGGAGAAGAAATGTCACCATGGTAgcgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from CESAR gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGC---CGGAGAAATGTCACCATGGTGtc agttagaggatgcaagtagttattgcacttttatttctgttctttgccaggGAGAGACTTTTGTACTGGAAGGATCTTTTCCTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAgcgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGC---CGGAGAAATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATCTTTTCCTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Spaln_nt2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAA---ATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATCTTTTCCTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Pairagon GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGG---AGAAATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATCTTTTCCTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Exonerate_protein2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGC---CGGAGAAATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATCTTTTCCTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGC---CGGAGAAATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATCTTTTCCTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCC-CAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtgttattgcgcttggtgcccccccttttttttgtgtgttttcagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCCTTACGATCCCCAGCCCT-TGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTCCAAgtatgttcacagaactaatgtggactgattttgggaccctggctagggcc Alignment from CESAR AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtgttattgcgcttggtgcccccccttttttttgtgtgttttcagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCCTTACGATCCCCAGCCCTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTCCAAgtatgttcacagaactaatgtggactgattttgggaccctggctagggcc Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtgttattgcgcttggtgcccccccttttttttgtgtgttttcagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCCTTACGATCCCCAGCCCTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTCCAAgtatgttcacagaactaatgtggactgattttgggaccctggctagggcc Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtgttattgcgcttggtgcccccccttttttttgtgtgttttcagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCCTTACGATCCCCAGCCCTTGTGACTGACCCACACCAGAACA---ACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTCCAAgtatgttcacagaactaatgtggactgattttgggaccctggctagggcc Alignment from Pairagon AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtgttattgcgcttggtgcccccccttttttttgtgtgttttcagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCCTTACGATCCCCAGCCCTTGTGACTGACCCACACCAGAACA---ACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTCCAAgtatgttcacagaactaatgtggactgattttgggaccctggctagggcc Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtgttattgcgcttggtgcccccccttttttttgtgtgttttcagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCCTTACGATCCCCAGCCCTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTCCAAgtatgttcacagaactaatgtggactgattttgggaccctggctagggcc Alignment from Exonerate_coding2genome gacctgtgttattgcgcttggtgcccccccttttttttgtgtgttttcagagccctggtgccccactaacccaaatcctatgccaactgctggatggattctcccttctggagaaaaggttgaaggagggccaggaggctggtagtgccttacgatccccagcccttgtgactgacccacaccagaacaacaagttcatcaagaatcgggtagggcaggaggtccaagtatgttcacagaactaatgtggactgattttgggaccctggctagggcc Alignment from GeneWise AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtgttattgcgcttggtgcccccccttttttttgtgtgttttcagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCCTTACGATCCCCAGCCCTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTCCAAgtatgttcacagaactaatgtggactgattttgggaccctggctagggcc #### Hps1_ID8620_8 --> 0 - 1 Original Alignment GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTC-ACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg ctgtaagcaaaatagggtgtactctctgtgacactctaaatttcttttagGATACTGAT---AATTCC---CCGGAAGAGTATTTCCACTCCCT-TCCTTCCCCAAGT------GGTCCAggtgagagaagcaggtgtgttgccctgttgtgtcacttagctaagttcaga Alignment from CESAR GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg ctgtaagcaaaatagggtgtactctctgtgacactctaaatttcttttagGATACTGATAAT---TCC---CCGGAAGAGTATTTCCACTCCCTTCCTTCCCCAAGT------GGTCCAggtgagagaagcaggtgtgttgccctgttgtgtcacttagctaagttcaga Alignment from Spaln_aa2Genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTA ctgtaagcaaaatagggtgtactctctgtgacactctaaatttcttttagGATACTGATAATTCC------CCGGAAGAGTATTTCCACTCCCTTCCTTCCCCAAGTGGTCCAGGTGAGAGAAgcaggtgtgttgccctgttgtgtcacttagctaagttcaga Alignment from Spaln_nt2Genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTC-ACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG ctgtaagcaaaatagggtgtactctctgtgacactctaaatttcttttagGATACTGATA--AT-TC---CCCGGAAGAGTATTTCCACTCC-CTTCCTTCCCCAAGTG------GTCCAGgtgagagaagcaggtgtgttgccctgttgtgtcacttagctaagttcaga Alignment from Pairagon ctgtaagcaaaatagggtgtactctctgtgacactctaaatttcttttaggatactgataattccccggaagagtatttccactcccttccttccccaagtggtccaggtgagagaagcaggtgtgttgccctgttgtgtcacttagctaagttcaga Alignment from Exonerate_protein2genome ctgtaagcaaaatagggtgtactctctgtgacactctaaatttcttttaggatactgataattccccggaagagtatttccactcccttccttccccaagtggtccaggtgagagaagcaggtgtgttgccctgttgtgtcacttagctaagttcaga Alignment from Exonerate_coding2genome ctgtaagcaaaatagggtgtactctctgtgacactctaaatttcttttaggatactgataattccccggaagagtatttccactcccttccttccccaagtggtccaggtgagagaagcaggtgtgttgccctgttgtgtcacttagctaagttcaga Alignment from GeneWise GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTAGCCT ctgtaagcaaaatagggtgtactctctgtgacactctaaatttcttttagGATACTGATAATTCC------CCGGAAGAGTATTTCCACTCCCTTCCTTCCCCAAGTGGTCCAGGTGAGAGAAGCAGgtgtgttgccctgttgtgtcacttagctaagttcaga #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACC-ACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC---CCTCAG tcccccctcacaattttagttgtattcttgtgatccctgccaccctgcagcCAAGGTGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCAGCCATGCACAG-GGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgtgtgcaaatcccagaatagcgattgactaattatcaaaaggagctgg Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tcccccctcacaattttagttgtattcttgtgatccctgccaccctgcagcCAAGGTGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCAGCCATGCACAGGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgtgtgcaaatcccagaatagcgattgactaattatcaaaaggagctgg Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGAC---AGCCCTCAG tcccccctcacaattttagttgtattcttgtgatccctgccaccctgcagCCAAGGTGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCAGCCATGCACAGGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgtgtgcaaatcccagaatagcgattgactaattatcaaaaggagctgg Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAAC-CACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC---CCTCAG tcccccctcacaattttagttgtattcttgtgatccctgccaccctgcagCCAAGGTGCAAGCACCCTATGTCCAGCAGATTTCC---------TTCTCCTAGTTCATGATCCACAGCCTTCACCAGCCATGCACAG-GGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgtgtgcaaatcccagaatagcgattgactaattatcaaaaggagctgg Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCT-----------------------------------------GGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG tcccccctcacaattttagttgtattcttgtgatccctgccaccctgcagCCAAGGTGCAAGCACCCTATGTCCAGCAGATTTCCTTCTCCTAGTTCATGATCCACAGCCTTCACCAGCCATGCACAGG-----------------------------------------------GAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgtgtgcaaatcccagaatagcgattgactaattatcaaaaggagctgg Alignment from Exonerate_protein2genome tcccccctcacaattttagttgtattcttgtgatccctgccaccctgcagccaaggtgcaagcaccctatgtccagcagatttccttctcctagttcatgatccacagccttcaccagccatgcacagggaggagggggagcaagaagatggtcacagcagcccacaggtgtgtgcaaatcccagaatagcgattgactaattatcaaaaggagctgg Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tcccccctcacaattttagttgtattcttgtgatccctgccaccctgcagCCAAGGTGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCAGCCATGCACAGGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgtgtgcaaatcccagaatagcgattgactaattatcaaaaggagctgg Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tcccccctcacaattttagttgtattcttgtgatccctgccaccctgcagCCAAGGTGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCAGCCATGCACAGGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgtgtgcaaatcccagaatagcgattgactaattatcaaaaggagctgg #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTATGAG-TCTCCCTGTCCTGCAAGTCAATCAg aatcccatagtcttatctttatgagttctgtctctcctcttcctctgcagacCAAGTGCTGCTATGTTATTATGAGCTCGC-CTGTCCTGCAAGTCAATCTggtaggttagtcacaagggtagaatggtactcagagtgtctatgtagtctc Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg aatcccatagtcttatctttatgagttctgtctctcctcttcctctgcagacCAAGTGCTGCTATGTTATTATGAGCTCGCCTGTCCTGCAAGTCAATCTggtaggttagtcacaagggtagaatggtactcagagtgtctatgtagtctc Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtcttatctttatgagttctgtctctcctcttcctctgcagACCAAGTGCTGCTATGTTATTATGAGCTCGCCTGTCCTGCAAGTCAATCTGgtaggttagtcacaagggtagaatggtactcagagtgtctatgtagtctc Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtcttatctttatgagttctgtctctcctcttcctctgcagACCAAGTGCTGCTATGTTATTATGAGCTCGCCTGTCCTGCAAGTCAATCTGgtaggttagtcacaagggtagaatggtactcagagtgtctatgtagtctc Alignment from Pairagon ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtcttatctttatgagttctgtctctcctcttcctctgcagACCAAGTGCTGCTATGTTATTATGAGCTCGCCTGTCCTGCAAGTCAATCTGgtaggttagtcacaagggtagaatggtactcagagtgtctatgtagtctc Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtcttatctttatgagttctgtctctcctcttcctctgcagACCAAGTGCTGCTATGTTATTATGAGCTCGCCTGTCCTGCAAGTCAATCTGgtaggttagtcacaagggtagaatggtactcagagtgtctatgtagtctc Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtcttatctttatgagttctgtctctcctcttcctctgcagACCAAGTGCTGCTATGTTATTATGAGCTCGCCTGTCCTGCAAGTCAATCTGgtaggttagtcacaagggtagaatggtactcagagtgtctatgtagtctc Alignment from GeneWise ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtcttatctttatgagttctgtctctcctcttcctctgcagACCAAGTGCTGCTATGTTATTATGAGCTCGCCTGTCCTGCAAGTCAATCTGgtaggttagtcacaagggtagaatggtactcagagtgtctatgtagtctc #### Incenp_ID2608_11 --> 1 - 0 Original Alignment gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATT-GATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctcataacattttcttcttgccaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAGGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTCGATG-GAAGACAGAAAAAgtgggtctgccatataacacagtgacacagggcagtgccttcctttggat Alignment from CESAR gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctcataacattttcttcttgccaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAGGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTCGATGGAAGACAGAAAAAgtgggtctgccatataacacagtgacacagggcagtgccttcctttggat Alignment from Spaln_aa2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctcataacattttcttcttgccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAGGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTCGATGGAAGACAGAAAAAgtgggtctgccatataacacagtgacacagggcagtgccttcctttggat Alignment from Spaln_nt2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctcataacattttcttcttgccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAGGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTCGATGGAAGACAGAAAAAgtgggtctgccatataacacagtgacacagggcagtgccttcctttggat Alignment from Pairagon GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATT-GATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctcataacattttcttcttgccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAGGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTCGATG-GAAGACAGAAAAAgtgggtctgccatataacacagtgacacagggcagtgccttcctttggat Alignment from Exonerate_protein2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctcataacattttcttcttgccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAGGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTCGATGGAAGACAGAAAAAgtgggtctgccatataacacagtgacacagggcagtgccttcctttggat Alignment from Exonerate_coding2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctcataacattttcttcttgccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAGGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTCGATGGAAGACAGAAAAAgtgggtctgccatataacacagtgacacagggcagtgccttcctttggat Alignment from GeneWise GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctcataacattttcttcttgccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAGGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTCGATGGAAGACAGAAAAAgtgggtctgccatataacacagtgacacagggcagtgccttcctttggat #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAG-CCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagcCTGGAGCAGGAGCCCGGTTG-GGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagcCTGGAGCAGGAGCCCGGTTGGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCCGGTTGGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCCGGTTGGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCCGGTTGGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCCGGTTGGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCCGGTTGGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCCGGTTGGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt #### Kank1_ID5464_10 --> 0 - 0 Original Alignment GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTAC---------------------GCCCAC-CTCAACTTCTCGAAAGCCCAGTCCCCG aatatcctgggacgctttccaatcatggctctttcttccttgcctttcagGATAGTAGT---GCCCTTTCCATTGCCCTAGAAGCAGGACATAACGACATAGCCATTCTGTTGTATGACATTGCCATCCTGCTGTATGCACACCTTAAACT-CTCGAAAGCCCAGTCCCCGgcaaggcaggttatctggcaaagattgctttaaatgcagcaatctaagtg Alignment from CESAR GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAG---------------------GACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG aatatcctgggacgctttccaatcatggctctttcttccttgcctttcagGATAGTAGT---GCCCTTTCCATTGCCCTAGAAGCAGGACATAACGACATAGCCATTCTGTTGTATGACATTGCCATCCTGCTGTATGCACACCTTAAACTCTCGAAAGCCCAGTCCCCGgcaaggcaggttatctggcaaagattgctttaaatgcagcaatctaagtg Alignment from Spaln_aa2Genome GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTT---------------------CTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG aatatcctgggacgctttccaatcatggctctttcttccttgcctttcagGAT---AGTAGTGCCCTTTCCATTGCCCTAGAAGCAGGACATAACGACATAGCCATTCTGTTGTATGACATTGCCATCCTGCTGTATGCACACCTTAAACTCTCGAAAGCCCAGTCCCCGgcaaggcaggttatctggcaaagattgctttaaatgcagcaatctaagtg Alignment from Spaln_nt2Genome GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTT---------------------CTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG aatatcctgggacgctttccaatcatggctctttcttccttgcctttcagGAT---AGTAGTGCCCTTTCCATTGCCCTAGAAGCAGGACATAACGACATAGCCATTCTGTTGTATGACATTGCCATCCTGCTGTATGCACACCTTAAACTCTCGAAAGCCCAGTCCCCGgcaaggcaggttatctggcaaagattgctttaaatgcagcaatctaagtg Alignment from Pairagon GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAG---------------------GACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG aatatcctgggacgctttccaatcatggctctttcttccttgcctttcagGATAGTAG---TGCCCTTTCCATTGCCCTAGAAGCAGGACATAACGACATAGCCATTCTGTTGTATGACATTGCCATCCTGCTGTATGCACACCTTAAACTCTCGAAAGCCCAGTCCCCGgcaaggcaggttatctggcaaagattgctttaaatgcagcaatctaagtg Alignment from Exonerate_protein2genome GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCGAGCAC aatatcctgggacgctttccaatcatggctctttcttccttgcctttcagGAT---AGTAGTGCCCTTTCCATTGCCCTAGAAGCAGGACATAACGACATAGCCATTCTGTTGTATGACATTGCCATCCTGCTGTATGCACACCTTAAACTCTCgaaagcccagtccccggcaaggcaggttatctggcaaagattgctttaaatgcagcaatctaagtg Alignment from Exonerate_coding2genome ATAGCCCTGGAAGCTGGACACAAGGAC aatatcctgggacgctttccaatcatggctctttcttccttgcctttcaggatagtagtgccctttccattgccctagaagcaggacataacgacatagccattctgttgtatgacattgccatcctgctgtatgcacaccttaaactctcgaaagcccagtccccggcaaggcaggttatctggcaaagATTGCTTTAAATGCAGCAATCTAAGTG Alignment from GeneWise GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAG---------------------GACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG--------- aatatcctgggacgctttccaatcatggctctttcttccttgcctttcagGAT---AGTAGTGCCCTTTCCATTGCCCTAGAAGCAGGACATAACGACATAGCCATTCTGTTGTATGACATTGCCATCCTGCTGTATGCACACCTTAAACTCTCGAAAGCCCAGTCCCCGGCAAGGCAGgttatctggcaaagattgctttaaatgcagcaatctaagtg #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATC-TCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtatggtctacacagatgtaaactgccctccatatcccctctcctagtGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCCTCTACGCTGC-GTATCTCAACCTAATCAATTACTACAAGgtaagtgggcacaattaacttgatgacaaaacttgcttatacttaaacgt Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtatggtctacacagatgtaaactgccctccatatcccctctcctagtGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCCTCTACGCTGCGTATCTCAACCTAATCAATTACTACAAGgtaagtgggcacaattaacttgatgacaaaacttgcttatacttaaacgt Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtatggtctacacagatgtaaactgccctccatatcccctctcctagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCCTCTACGCTGCGTATCTCAACCTAATCAATTACTACAAGgtaagtgggcacaattaacttgatgacaaaacttgcttatacttaaacgt Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtatggtctacacagatgtaaactgccctccatatcccctctcctagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCCTCTACGCTGCGTATCTCAACCTAATCAATTACTACAAGgtaagtgggcacaattaacttgatgacaaaacttgcttatacttaaacgt Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCAT-CTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtatggtctacacagatgtaaactgccctccatatcccctctcctagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCCTCTACGCTGC-GTATCTCAACCTAATCAATTACTACAAGgtaagtgggcacaattaacttgatgacaaaacttgcttatacttaaacgt Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtatggtctacacagatgtaaactgccctccatatcccctctcctagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCCTCTACGCTGCGTATCTCAACCTAATCAATTACTACAAGgtaagtgggcacaattaacttgatgacaaaacttgcttatacttaaacgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtatggtctacacagatgtaaactgccctccatatcccctctcctagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCCTCTACGCTGCGTATCTCAACCTAATCAATTACTACAAGgtaagtgggcacaattaacttgatgacaaaacttgcttatacttaaacgt #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAG-AGGCCACAGATCACCATCaa cctgtaccagggaagaatgtctgcagggtggatccttttccctcccataggcTATGAACTCTCAAAAGTAGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGCAGGC-CCAGATCACCATCaagtaagtgaaagtgctaataagcaggatgtggtatggtctacacagatgta Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa cctgtaccagggaagaatgtctgcagggtggatccttttccctcccataggcTATGAACTCTCAAAAGTAGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGCAGGCCCAGATCACCATCaagtaagtgaaagtgctaataagcaggatgtggtatggtctacacagatgta Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggaagaatgtctgcagggtggatccttttccctcccatagGCTATGAACTCTCAAAAGTAGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGCAGGCCCAGATCACCATCAAgtaagtgaaagtgctaataagcaggatgtggtatggtctacacagatgta Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggaagaatgtctgcagggtggatccttttccctcccatagGCTATGAACTCTCAAAAGTAGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGCAGGCCCAGATCACCATCAAgtaagtgaaagtgctaataagcaggatgtggtatggtctacacagatgta Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggaagaatgtctgcagggtggatccttttccctcccatagGCTATGAACTCTCAAAAGTAGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGCAGGCCCAGATCACCATCAAgtaagtgaaagtgctaataagcaggatgtggtatggtctacacagatgta Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggaagaatgtctgcagggtggatccttttccctcccatagGCTATGAACTCTCAAAAGTAGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGCAGGCCCAGATCACCATCAAgtaagtgaaagtgctaataagcaggatgtggtatggtctacacagatgta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggaagaatgtctgcagggtggatccttttccctcccatagGCTATGAACTCTCAAAAGTAGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGCAGGCCCAGATCACCATCAAgtaagtgaaagtgctaataagcaggatgtggtatggtctacacagatgta #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTG-CTGCGGCGCAACCAGGACAACGAAGATGAGTGGc ggtaaccaagggctaccaatacacatcccttccattaccttggcccacagGGTGAGATAATTGAGGGCTGCTGCCTACCTGTCCCTTCGGC-CAATCAAGATAATGAAGATGAGTGGcgtgagggtgtcctgagggttagtctgaaggagcaaagggcaaggtcccag Alignment from CESAR GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc ggtaaccaagggctaccaatacacatcccttccattaccttggcccacagGGTGAGATAATTGAGGGCTGCTGCCTACCTGTCCCTTCGGCCAATCAAGATAATGAAGATGAGTGGcgtgagggtgtcctgagggttagtctgaaggagcaaagggcaaggtcccag Alignment from Spaln_aa2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC ggtaaccaagggctaccaatacacatcccttccattaccttggcccacagGGTGAGATAATTGAGGGCTGCTGCCTACCTGTCCCTTCGGCCAATCAAGATAATGAAGATGAGTGGCgtgagggtgtcctgagggttagtctgaaggagcaaagggcaaggtcccag Alignment from Spaln_nt2Genome G GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGC-TGCGGCGCAACCAGGACAACGAAGATGAGTGGC GgtaaccaagggctaccaatacacatcccttccattaccttggcccacagGGTGAGATAATTGAGGGCTGCTGCCTACCTGTCCCTTCGGC-CAATCAAGATAATGAAGATGAGTGGCgtgagggtgtcctgagggttagtctgaaggagcaaagggcaaggtcccag Alignment from Pairagon GGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC ggtaaccaagggctaccaatacacatcccttccattaccttggcccacaGGGTGAGATAATTGAGGGCTGCTGCCTACCTGTCCCTTCGGCCAATCAAGATAATGAAGATGAGTGGCgtgagggtgtcctgagggttagtctgaaggagcaaagggcaaggtcccag Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC ggtaaccaagggctaccaatacacatcccttccattaccttggcccacagGGTGAGATAATTGAGGGCTGCTGCCTACCTGTCCCTTCGGCCAATCAAGATAATGAAGATGAGTGGCgtgagggtgtcctgagggttagtctgaaggagcaaagggcaaggtcccag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCGGAGGTGGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC ggtaaccaagggctaccaatacacatcccttccattaccttGGCCCACAGGGTGAGATAATTGAGGGCTGCTGCCTACCTGTCCCTTCGGCCAATCAAGATAATGAAGATGAGTGGCgtgagggtgtcctgagggttagtctgaaggagcaaagggcaaggtcccag #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGC-CTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg acagggttattgcccacagagttatgggtccttttggtctccaatgccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACTTACCGCTGTCCTCACCC-AAATGCTCTTGGCCAAGCTGAAGCCTCAGCAACTCTGATAGTACTTACACCAggtgagtattaattgtgggtagcagcatgtggcaggagtcatattttaaga Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg acagggttattgcccacagagttatgggtccttttggtctccaatgccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACTTACCGCTGTCCTCACCCAAATGCTCTTGGCCAAGCTGAAGCCTCAGCAACTCTGATAGTACTTACACCAggtgagtattaattgtgggtagcagcatgtggcaggagtcatattttaaga Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acagggttattgcccacagagttatgggtccttttggtctccaatgccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACTTACCGCTGTCCTCACCCAAATGCTCTTGGCCAAGCTGAAGCCTCAGCAACTCTGATAGTACTTACACCAGgtgagtattaattgtgggtagcagcatgtggcaggagtcatattttaaga Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acagggttattgcccacagagttatgggtccttttggtctccaatgccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACTTACCGCTGTCCTCACCCAAATGCTCTTGGCCAAGCTGAAGCCTCAGCAACTCTGATAGTACTTACACCAGgtgagtattaattgtgggtagcagcatgtggcaggagtcatattttaaga Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acagggttattgcccacagagttatgggtccttttggtctccaatgccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACTTACCGCTGTCCTCACCCAAATGCTCTTGGCCAAGCTGAAGCCTCAGCAACTCTGATAGTACTTACACCAGgtgagtattaattgtgggtagcagcatgtggcaggagtcatattttaaga Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acagggttattgcccacagagttatgggtccttttggtctccaatgccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACTTACCGCTGTCCTCACCCAAATGCTCTTGGCCAAGCTGAAGCCTCAGCAACTCTGATAGTACTTACACCAGgtgagtattaattgtgggtagcagcatgtggcaggagtcatattttaaga Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acagggttattgcccacagagttatgggtccttttggtctccaatgccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACTTACCGCTGTCCTCACCCAAATGCTCTTGGCCAAGCTGAAGCCTCAGCAACTCTGATAGTACTTACACCAGgtgagtattaattgtgggtagcagcatgtggcaggagtcatattttaaga Alignment from GeneWise --------------------------------------------------TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ACAGGGTTATTGCCCACAGAGTTATGGGTCCTTTTGGTCTCCAATGCCAGTTCAGAGGTGGACCACAAGAATTTAAAGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACTTACCGCTGTCCTCACCCAAATGCTCTTGGCCAAGCTGAAGCCTCAGCAACTCTGATAGTACTTACACCAGgtgagtattaattgtgggtagcagcatgtggcaggagtcatattttaaga #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAGGACGGCGTG-GTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttcccttgagactgagtttaaaacactcctttatacagAAGATGGATAGAATCAAGGATGGTGTGCGTGACCA-TGAGGAATTCATTGCGTCTTGTCAACAGgtgagcaaatgtgcaagaagggttggggtctgaaaagtggttctaggttc Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttcccttgagactgagtttaaaacactcctttatacagAAGATGGATAGAATCAAGGATGGTGTGCGTGACCATGAGGAATTCATTGCGTCTTGTCAACAGgtgagcaaatgtgcaagaagggttggggtctgaaaagtggttctaggttc Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttcccttgagactgagtttaaaacactcctttatacagAAGATGGATAGAATCAAGGATGGTGTGCGTGACCATGAGGAATTCATTGCGTCTTGTCAACAGgtgagcaaatgtgcaagaagggttggggtctgaaaagtggttctaggttc Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTG-GTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttcccttgagactgagtttaaaacactcctttatacagAAGATGGATAGAATCAAGGATGGTGTGCGTGACCA-TGAGGAATTCATTGCGTCTTGTCAACAGgtgagcaaatgtgcaagaagggttggggtctgaaaagtggttctaggttc Alignment from Pairagon AAGATGGACAGAAACAAGGACGGCGTG-GTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttcccttgagactgagtttaaaacactcctttatacagAAGATGGATAGAATCAAGGATGGTGTGCGTGACCA-TGAGGAATTCATTGCGTCTTGTCAACAGgtgagcaaatgtgcaagaagggttggggtctgaaaagtggttctaggttc Alignment from Exonerate_protein2genome gtttccctcaacttcccttgagactgagtttaaaacactcctttatacagaagatggatagaatcaaggatggtgtgcgtgaccatgaggaattcattgcgtcttgtcaacaggtgagcaaatgtgcaagaagggttggggtctgaaaagtggttctaggttc Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttcccttgagactgagtttaaaacactcctttatacagAAGATGGATAGAATCAAGGATGGTGTGCGTGACCATGAGGAATTCATTGCGTCTTGTCAACAGgtgagcaaatgtgcaagaagggttggggtctgaaaagtggttctaggttc Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttcccttgagactgagtttaaaacactcctttatacagAAGATGGATAGAATCAAGGATGGTGTGCGTGACCATGAGGAATTCATTGCGTCTTGTCAACAGgtgagcaaatgtgcaagaagggttggggtctgaaaagtggttctaggttc #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCC-ATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggggtgctatgctacccttaaccatacccttttcttggtgtggtttgcagGACATGATTGACATCATGAAATCCCATCTATG-CATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGAGAACACGTGGAAAGCTTCTTCCAAgtaagaggtgcaacttctggagtagtgggacatgtccagtctaggagtta Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggggtgctatgctacccttaaccatacccttttcttggtgtggtttgcagGACATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGAGAACACGTGGAAAGCTTCTTCCAAgtaagaggtgcaacttctggagtagtgggacatgtccagtctaggagtta Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggggtgctatgctacccttaaccatacccttttcttggtgtggtttgcagGACATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGAGAACACGTGGAAAGCTTCTTCCAAgtaagaggtgcaacttctggagtagtgggacatgtccagtctaggagtta Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggggtgctatgctacccttaaccatacccttttcttggtgtggtttgcagGACATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGAGAACACGTGGAAAGCTTCTTCCAAgtaagaggtgcaacttctggagtagtgggacatgtccagtctaggagtta Alignment from Pairagon GAAATGCTCGACATCATGAAGT-CCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggggtgctatgctacccttaaccatacccttttcttggtgtggtttgcagGACATGATTGACATCATGAAATCCCATCTATG-CATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGAGAACACGTGGAAAGCTTCTTCCAAgtaagaggtgcaacttctggagtagtgggacatgtccagtctaggagtta Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggggtgctatgctacccttaaccatacccttttcttggtgtggtttgcagGACATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGAGAACACGTGGAAAGCTTCTTCCAAgtaagaggtgcaacttctggagtagtgggacatgtccagtctaggagtta Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggggtgctatgctacccttaaccatacccttttcttggtgtggtttgcagGACATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGAGAACACGTGGAAAGCTTCTTCCAAgtaagaggtgcaacttctggagtagtgggacatgtccagtctaggagtta Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggggtgctatgctacccttaaccatacccttttcttggtgtggtttgcagGACATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGAGAACACGTGGAAAGCTTCTTCCAAgtaagaggtgcaacttctggagtagtgggacatgtccagtctaggagtta #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACC-AACCATGATGGCTCTGTCAGTTTTGAG gagccaagggaatgtagatatgaatccatcattttacttctgctctgcagacTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCCAACCATG-TGGCTCTGTTAGTTTTGAAgtgaggcaagaaaaaaggtgcgctaaggaaaccaaccatccccattaact Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG gagccaagggaatgtagatatgaatccatcattttacttctgctctgcagacTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCCAACCATGTGGCTCTGTTAGTTTTGAAgtgaggcaagaaaaaaggtgcgctaaggaaaccaaccatccccattaact Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG gagccaagggaatgtagatatgaatccatcattttacttctgctctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCCAACCATGTGGCTCTGTTAGTTTTGAAgtgaggcaagaaaaaaggtgcgctaaggaaaccaaccatccccattaact Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG gagccaagggaatgtagatatgaatccatcattttacttctgctctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCCAACCATGTGGCTCTGTTAGTTTTGAAgtgaggcaagaaaaaaggtgcgctaaggaaaccaaccatccccattaact Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACA-CCAACCATGATGGCTCTGTCAGTTTTGAG gagccaagggaatgtagatatgaatccatcattttacttctgctctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCCAACCATG-TGGCTCTGTTAGTTTTGAAgtgaggcaagaaaaaaggtgcgctaaggaaaccaaccatccccattaact Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG gagccaagggaatgtagatatgaatccatcattttacttctgctctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCCAACCATGTGGCTCTGTTAGTTTTGAAgtgaggcaagaaaaaaggtgcgctaaggaaaccaaccatccccattaact Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG gagccaagggaatgtagatatgaatccatcattttacttctgctctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCCAACCATGTGGCTCTGTTAGTTTTGAAgtgaggcaagaaaaaaggtgcgctaaggaaaccaaccatccccattaact Alignment from GeneWise ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG gagccaagggaatgtagatatgaatccatcattttacttctgctctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCCAACCATGTGGCTCTGTTAGTTTTGAAgtgaggcaagaaaaaaggtgcgctaaggaaaccaaccatccccattaact #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAA-ATTTATTCTCAGTTCTTTCCCCAAGGAg aagtgccaatttcatgattggttatattatgttcaaactaatgtccccagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGCGTTTATTCTC-GTTCTTTCCACAAGAAggtgagtcacaggtgtagcgggaagatataagtacagtagagccaagggaa Alignment from CESAR GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAA---ATTTATTCTCAGTTCTTTCCCCAAGGAg aagtgccaatttcatgattggttatattatgttcaaactaatgtccccagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGCGTTTATTCTCG---TTCTTTCCACAAGAAggtgagtcacaggtgtagcgggaagatataagtacagtagagccaagggaa Alignment from Spaln_aa2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG aagtgccaatttcatgattggttatattatgttcaaactaatgtccccagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGCGTTTATTCTCGTTCTTTCCACAAGAAGgtgagtcacaggtgtagcgggaagatataagtacagtagagccaagggaa Alignment from Spaln_nt2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG aagtgccaatttcatgattggttatattatgttcaaactaatgtccccagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGCGTTTATTCTCGTTCTTTCCACAAGAAGgtgagtcacaggtgtagcgggaagatataagtacagtagagccaagggaa Alignment from Pairagon GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAA-ATTTATTCTCAGTTCTTTCCCCAAGGAG aagtgccaatttcatgattggttatattatgttcaaactaatgtccccagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGCGTTTATTCTC-GTTCTTTCCACAAGAAGgtgagtcacaggtgtagcgggaagatataagtacagtagagccaagggaa Alignment from Exonerate_protein2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG aagtgccaatttcatgattggttatattatgttcaaactaatgtccccagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGCGTTTATTCTCGTTCTTTCCACAAGAAGgtgagtcacaggtgtagcgggaagatataagtacagtagagccaagggaa Alignment from Exonerate_coding2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG aagtgccaatttcatgattggttatattatgttcaaactaatgtccccagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGCGTTTATTCTCGTTCTTTCCACAAGAAGgtgagtcacaggtgtagcgggaagatataagtacagtagagccaagggaa Alignment from GeneWise GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG aagtgccaatttcatgattggttatattatgttcaaactaatgtccccagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGCGTTTATTCTCGTTCTTTCCACAAGAAGgtgagtcacaggtgtagcgggaagatataagtacagtagagccaagggaa #### Kcnip2_ID9608_4 --> 2 - 0 Original Alignment acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGG-CCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtcatgaagtatataatatccttttgcttcatagatAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCCAGAAAGTT-GGAACAGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGCTGCAGGTCTTGTATAGAGGGTTCAAGAATgtttgaggggaatgaaaccagctgtgcagtagctgaccctccaagctcct Alignment from CESAR acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTG---CAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtcatgaagtatataatatccttttgcttcatagatAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCCAGAAAGTTGGAACAGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGCTGCAGGTCTTGTATAGAGGGTTCAAGAATgtttgaggggaatgaaaccagctgtgcagtagctgaccctccaagctcct Alignment from Spaln_aa2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtcatgaagtatataatatccttttgcttcatagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCCAGAAAGTTGGAACAGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGCTGCAGGTCTTGTATAGAGGGTTCAAGAATgtttgaggggaatgaaaccagctgtgcagtagctgaccctccaagctcct Alignment from Spaln_nt2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCA---GGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtcatgaagtatataatatccttttgcttcatagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCCAGAAAGTTGGAACAGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGCTGCAGGTCTTGTATAGAGGGTTCAAGAATgtttgaggggaatgaaaccagctgtgcagtagctgaccctccaagctcct Alignment from Pairagon ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTC-------TGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGT---TGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtcatgaagtatataatatccttttgcttcatagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCC-------CAGAAAGTTGGAACAGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGCTGCAGGTCTTGTATAGAGGGTTCAAGAATgtttgaggggaatgaaaccagctgtgcagtagctgaccctccaagctcct Alignment from Exonerate_protein2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtcatgaagtatataatatccttttgcttcatagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCCAGAAAGTTGGAACAGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGCTGCAGGTCTTGTATAGAGGGTTCAAGAATgtttgaggggaatgaaaccagctgtgcagtagctgaccctccaagctcct Alignment from Exonerate_coding2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtcatgaagtatataatatccttttgcttcatagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCCAGAAAGTTGGAACAGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGCTGCAGGTCTTGTATAGAGGGTTCAAGAATgtttgaggggaatgaaaccagctgtgcagtagctgaccctccaagctcct Alignment from GeneWise ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTG---CAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggcttgtgctggtcatgaagtatataatatccttttgcttcatagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCCAGAAAGTTGGAACAGCTACAGAAACACGCCAAGTTTGCACACAGAGAGTTGCTGCAGGTCTTGTATAGAGGGTTCAAGAATgtttgaggggaatgaaaccagctgtgcagtagctgaccctccaagctcct #### Kcnip2_ID9609_3 --> 2 - 1 Original Alignment caTTAGCTGCCCCAGCCTCC-CTCCGCCCCCACAGACCCCGCCCGCTGGACCCAg gttggggttttaggttgcttgcccaactgaagtgcttgctttcttcccagcaTTAGCTGCCCCAGCCTCCCCTTCGCC-CCATAGACCCCGACCACTGGACCCAggtaagttacacccttggctgttactggttgatatcaaatttaggacccag Alignment from CESAR caTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAg gttggggttttaggttgcttgcccaactgaagtgcttgctttcttcccagcaTTAGCTGCCCCAGCCTCCCCTTCGCCCCATAGACCCCGACCACTGGACCCAggtaagttacacccttggctgttactggttgatatcaaatttaggacccag Alignment from Spaln_aa2Genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gttggggttttaggttgcttgcccaactgaagtgcttgctttcttcccagCATTAGCTGCCCCAGCCTCCCCTTCGCCCCATAGACCCCGACCACTGGACCCAGgtaagttacacccttggctgttactggttgatatcaaatttaggacccag Alignment from Spaln_nt2Genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gttggggttttaggttgcttgcccaactgaagtgcttgctttcttcccagCATTAGCTGCCCCAGCCTCCCCTTCGCCCCATAGACCCCGACCACTGGACCCAGgtaagttacacccttggctgttactggttgatatcaaatttaggacccag Alignment from Pairagon CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gttggggttttaggttgcttgcccaactgaagtgcttgctttcttcccagCATTAGCTGCCCCAGCCTCCCCTTCGCCCCATAGACCCCGACCACTGGACCCAGgtaagttacacccttggctgttactggttgatatcaaatttaggacccag Alignment from Exonerate_protein2genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gttggggttttaggttgcttgcccaactgaagtgcttgctttcttcccagCATTAGCTGCCCCAGCCTCCCCTTCGCCCCATAGACCCCGACCACTGGACCCAGgtaagttacacccttggctgttactggttgatatcaaatttaggacccag Alignment from Exonerate_coding2genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gttggggttttaggttgcttgcccaactgaagtgcttgctttcttcccagCATTAGCTGCCCCAGCCTCCCCTTCGCCCCATAGACCCCGACCACTGGACCCAGgtaagttacacccttggctgttactggttgatatcaaatttaggacccag Alignment from GeneWise CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gttggggttttaggttgcttgcccaactgaagtgcttgctttcttcccagCATTAGCTGCCCCAGCCTCCCCTTCGCCCCATAGACCCCGACCACTGGACCCAGgtaagttacacccttggctgttactggttgatatcaaatttaggacccag #### Kif11_ID7318_8 --> 0 - 0 Original Alignment GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTC-TTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ttgaactgtggaagctgcagctagaccaaatgtgaccactgcttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGTCAAGAGAGCACGCAAAGCTGGAAATATCAACCAATCTCTCCTTAACTC-GGGAAGAGTAATTACTGCACTCTTGGAGAGAACACCCCATATTCCCTACCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACTATTTCACCAGCGTCTTTCAATCTTGAAgtgggccaagtagtagccatgacacttcggtggcctcttcagccattgtg Alignment from CESAR GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ttgaactgtggaagctgcagctagaccaaatgtgaccactgcttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGTCAAGAGAGCACGCAAAGCTGGAAATATCAACCAATCTCTCCTTAACTCGGGAAGAGTAATTACTGCACTCTTGGAGAGAACACCCCATATTCCCTACCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACTATTTCACCAGCGTCTTTCAATCTTGAAgtgggccaagtagtagccatgacacttcggtggcctcttcagccattgtg Alignment from Spaln_aa2Genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ttgaactgtggaagctgcagctagaccaaatgtgaccactgcttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGTCAAGAGAGCACGCAAAGCTGGAAATATCAACCAATCTCTCCTTAACTCGGGAAGAGTAATTACTGCACTCTTGGAGAGAACACCCCATATTCCCTACCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACTATTTCACCAGCGTCTTTCAATCTTGAAgtgggccaagtagtagccatgacacttcggtggcctcttcagccattgtg Alignment from Spaln_nt2Genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ttgaactgtggaagctgcagctagaccaaatgtgaccactgcttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGTCAAGAGAGCACGCAAAGCTGGAAATATCAACCAATCTCTCCTTAACTCGGGAAGAGTAATTACTGCACTCTTGGAGAGAACACCCCATATTCCCTACCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACTATTTCACCAGCGTCTTTCAATCTTGAAgtgggccaagtagtagccatgacacttcggtggcctcttcagccattgtg Alignment from Pairagon GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ttgaactgtggaagctgcagctagaccaaatgtgaccactgcttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGTCAAGAGAGCACGCAAAGCTGGAAATATCAACCAATCTCTCCTTAACTCGGGAAGAGTAATTACTGCACTCTTGGAGAGAACACCCCATATTCCCTACCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACTATTTCACCAGCGTCTTTCAATCTTGAAgtgggccaagtagtagccatgacacttcggtggcctcttcagccattgtg Alignment from Exonerate_protein2genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ttgaactgtggaagctgcagctagaccaaatgtgaccactgcttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGTCAAGAGAGCACGCAAAGCTGGAAATATCAACCAATCTCTCCTTAACTCGGGAAGAGTAATTACTGCACTCTTGGAGAGAACACCCCATATTCCCTACCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACTATTTCACCAGCGTCTTTCAATCTTGAAgtgggccaagtagtagccatgacacttcggtggcctcttcagccattgtg Alignment from Exonerate_coding2genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ttgaactgtggaagctgcagctagaccaaatgtgaccactgcttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGTCAAGAGAGCACGCAAAGCTGGAAATATCAACCAATCTCTCCTTAACTCGGGAAGAGTAATTACTGCACTCTTGGAGAGAACACCCCATATTCCCTACCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACTATTTCACCAGCGTCTTTCAATCTTGAAgtgggccaagtagtagccatgacacttcggtggcctcttcagccattgtg Alignment from GeneWise GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ttgaactgtggaagctgcagctagaccaaatgtgaccactgcttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGTCAAGAGAGCACGCAAAGCTGGAAATATCAACCAATCTCTCCTTAACTCGGGAAGAGTAATTACTGCACTCTTGGAGAGAACACCCCATATTCCCTACCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACTATTTCACCAGCGTCTTTCAATCTTGAAgtgggccaagtagtagccatgacacttcggtggcctcttcagccattgtg #### Kif11_ID7326_16 --> 0 - 0 Original Alignment GTAGAAGATCAAAAAAGAGAAATAGAC-AGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACCAGCTTCT-GAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from CESAR GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACCAGCTTCTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Spaln_aa2Genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACCAGCTTCTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Spaln_nt2Genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACCAGCTTCTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Pairagon GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACCAGCTTCTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Exonerate_protein2genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACCAGCTTCTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Exonerate_coding2genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACCAGCTTCTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from GeneWise GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACCAGCTTCTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGAC-CCTCAAAGCATCCTTGGCCACTTA---AGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCCGC-GAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCCGCGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCCGCGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Spaln_nt2Genome TGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTA---AGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag-GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCCGCGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGT---ACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCCGCGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGT---ACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Exonerate_protein2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCCGCGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Exonerate_coding2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCCGCGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCCGCGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCT-GTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gacacattttgaggattgcagttaaacttgccccatctccctgtccacagggCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAACAGG---------TCCAGTTTAAATGTGGATAATATAAAGTATTCTCGTGT-GGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAggtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gacacattttgaggattgcagttaaacttgccccatctccctgtccacagggCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTCGTGTGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAggtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTCGTGTGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTCGTGTGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCT-GTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTCGTGT-GGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTCGTGTGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Exonerate_coding2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTGGACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgagGATTGCAGTTAAACTTGCCCCATCTCCCTGTCCACAGGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTCGTGTGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTCGTGTGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt #### Kif20b_ID7004_9 --> 1 - 2 Original Alignment tCACAGCATATTCACTATTAGA-ATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga ttatagttgcatggaaatcttatatttgttctgtcctcttggtcctgcagtCATAGCATATTCACTATTAGGCCTATTGC-AATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtaggtgggttaattctgaaagctgcgggtctttttggaacaacagtctt Alignment from CESAR tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga ttatagttgcatggaaatcttatatttgttctgtcctcttggtcctgcagtCATAGCATATTCACTATTAGGCCTATTGCAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtaggtgggttaattctgaaagctgcgggtctttttggaacaacagtctt Alignment from Spaln_aa2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatggaaatcttatatttgttctgtcctcttggtcctgcagTCATAGCATATTCACTATTAGGCCTATTGCAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaggtgggttaattctgaaagctgcgggtctttttggaacaacagtctt Alignment from Spaln_nt2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatggaaatcttatatttgttctgtcctcttggtcctgcagTCATAGCATATTCACTATTAGGCCTATTGCAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaggtgggttaattctgaaagctgcgggtctttttggaacaacagtctt Alignment from Pairagon TCACAGCATATTCACTATTAGAATATTACAG---------ATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatggaaatcttatatttgttctgtcctcttggtcctgcagTCATAGCATATTCACTATTAG---------GCCTATTGCAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaggtgggttaattctgaaagctgcgggtctttttggaacaacagtctt Alignment from Exonerate_protein2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatggaaatcttatatttgttctgtcctcttggtcctgcagTCATAGCATATTCACTATTAGGCCTATTGCAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaggtgggttaattctgaaagctgcgggtctttttggaacaacagtctt Alignment from Exonerate_coding2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatggaaatcttatatttgttctgtcctcttggtcctgcagTCATAGCATATTCACTATTAGGCCTATTGCAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaggtgggttaattctgaaagctgcgggtctttttggaacaacagtctt Alignment from GeneWise TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatggaaatcttatatttgttctgtcctcttggtcctgcagTCATAGCATATTCACTATTAGGCCTATTGCAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaggtgggttaattctgaaagctgcgggtctttttggaacaacagtctt #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGA-GAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaacagtctttgcagcacctctctctctctctgctctcaggTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGACGAAGCAG-AAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAaagtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaacagtctttgcagcacctctctctctctctgctctcaggTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGACGAAGCAGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAaagtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGACGAAGCAGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGACGAAGCAGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAG-------AGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGACGAAGCAGA-------AATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGACGAAGCAGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGACGAAGCAGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGACGAAGCAGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga #### Kif20b_ID7008_13 --> 0 - 2 Original Alignment GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACA-CAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACCAAAAAT-CACTCAGTATTGGAGCCATCGGGAAGCTGATTTTaagtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from CESAR GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACCAAAAATCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTaagtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Spaln_aa2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACCAAAAATCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Spaln_nt2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACCAAAAATCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Pairagon GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACCAAAAATCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Exonerate_protein2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACCAAAAATCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Exonerate_coding2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACCAAAAATCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from GeneWise GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACCAAAAATCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGG-CGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag agtgcgtaaccaatctattttgagcctgtttttctctatggcccacacagGATGGAAGTGGTTCCCTACAGCTGCAGTGGTT-TTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTTGTAAGGAAATTGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTaggtaattcctcacctctctcatccatatcattaatgatgagtagcagggca Alignment from CESAR GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag agagcgtaaccaatctattttgagcctgtttttctctatggcccacacagGATGGAAGTGGTTCCCTACAGCTGCAGTGGTTTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTTGTAAGGAAATTGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTaggtaattcctcacctctctcatccatatcattaatgatgagtagcagggca Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agtgcgtaaccaatctattttgagcctgtttttctctatggcccacacagGATGGAAGTGGTTCCCTACAGCTGCAGTGGTTTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTTGTAAGGAAATTGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaattcctcacctctctcatccatatcattaatgatgagtagcagggca Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGC-GCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agtgcgtaaccaatctattttgagcctgtttttctctatggcccacacagGATGGAAGTGGTTCCCTACAGCTGCAGTGG-TTTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTTGTAAGGAAATTGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaattcctcacctctctcatccatatcattaatgatgagtagcagggca Alignment from Pairagon GACGGCAGCGGCTCTCTGCGGC-GCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agtgcgtaaccaatctattttgagcctgtttttctctatggcccacacagGATGGAAGTGGTTCCCTACAGCTGCAGTGG-TTTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTTGTAAGGAAATTGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaattcctcacctctctcatccatatcattaatgatgagtagcagggca Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agtgcgtaaccaatctattttgagcctgtttttctctatggcccacacagGATGGAAGTGGTTCCCTACAGCTGCAGTGGTTTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTTGTAAGGAAATTGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaattcctcacctctctcatccatatcattaatgatgagtagcagggca Alignment from Exonerate_coding2genome agtgcgtaaccaatctattttgagcctgtttttctctatggcccacacaggatggaagtggttccctacagctgcagtggttttttgggaaactccgagatgctctaagacgcagcagtgaaatgcttgtaaggaaattgcaggggggtgggccacaggagccctctaattctaggtaattcctcacctctctcatccatatcattaatgatgagtagcagggca Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agtgcgtaaccaatctattttgagcctgtttttctctatggcccacacagGATGGAAGTGGTTCCCTACAGCTGCAGTGGTTTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTTGTAAGGAAATTGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaattcctcacctctctcatccatatcattaatgatgagtagcagggca #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTG-GAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacattcttgtgtatacttttgcagggctattgcccttaaccactcagGGCCTAGACCCTGCTAGTCAGACAAAGGTCATCGAGCTGTTAAAGGATGGTAGCAGCGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGATTTGCGAAG-GTCAGAGCCGACGGCTCACTGGGGTGGTgtaagagcgtaaccaatctattttgagcctgtgatatctgattgatcctg Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacattcttgtgtatacttttgcagggctattgcccttaaccactcagGGCCTAGACCCTGCTAGTCAGACAAAGGTCATCGAGCTGTTAAAGGATGGTAGCAGCGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGATTTGCGAAGGTCAGAGCCGACGGCTCACTGGGGTGGTgtaagagcgtaaccaatctattttgagcctgtttttctctatggcccaca Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacattcttgtgtatacttttgcagggctattgcccttaaccactcagGGCCTAGACCCTGCTAGTCAGACAAAGGTCATCGAGCTGTTAAAGGATGGTAGCAGCGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGATTTGCGAAGGTCAGAGCCGACGGCTCACTGGGGTGGTgtaagagcgtaaccaatctattttgagcctgtgatatctgattgatcctg Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacattcttgtgtatacttttgcagggctattgcccttaaccactcagGGCCTAGACCCTGCTAGTCAGACAAAGGTCATCGAGCTGTTAAAGGATGGTAGCAGCGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGATTTGCGAAGGTCAGAGCCGACGGCTCACTGGGGTGGTgtaagagcgtaaccaatctattttgagcctgtgatatctgattgatcctg Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTC----------------AATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacattcttgtgtatacttttgcagggctattgcccttaaccactcagGGCCTAGACCCTGCTAGTCAGACAAAGGTCATCGAGCTGTTAAAGGATGGTAGCAGCGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCTCCTGAACTAGATTTGCGAA-------------------GGTCAGAGCCGACGGCTCACTGGGGTGGTgtaagagcgtaaccaatctattttgagcctgtgatatctgattgatcctg Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacattcttgtgtatacttttgcagggctattgcccttaaccactcagGGCCTAGACCCTGCTAGTCAGACAAAGGTCATCGAGCTGTTAAAGGATGGTAGCAGCGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGATTTGCGAAGGTCAGAGCCGACGGCTCACTGGGGTGGTgtaagagcgtaaccaatctattttgagcctgtgatatctgattgatcctg Alignment from Exonerate_coding2genome gccacattcttgtgtatacttttgcagggctattgcccttaaccactcagggcctagaccctgctagtcagacaaaggtcatcgagctgttaaaggatggtagcagcggacacagccattgccgcggtagtagagatgtgattgggcctcctgaactagatttgcgaaggtcagagccgacggctcactggggtggtgtaagagcgtaaccaatctattttgagcctgtgatatctgattgatcctg Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacattcttgtgtatacttttgcagggctattgcccttaaccactcagGGCCTAGACCCTGCTAGTCAGACAAAGGTCATCGAGCTGTTAAAGGATGGTAGCAGCGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCTCCT---GAACTAGATTTGCGAAGGTCAGAGCCGACGGCTCACTGGGGTGGTgtaagagcgtaaccaatctattttgagcctgtgatatctgattgatcctg #### Klc2_ID861_5 --> 1 - 0 Original Alignment gGACCAGAATAAGTAC-AAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccatctgcgtcatgcattgttgaggggttaatcattgttattatttgtagaGACCAGAACAAATACCAGGGACG-TGCTCACCTACTCAATGAAGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtcaggtgtctaagtaatctccctgtccttgtaacaaagcttccagtccc Alignment from CESAR gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccatctgcgtcatgcattgttgaggggttaatcattgttattatttgtagaGACCAGAACAAATACCAGGGACGTGCTCACCTACTCAATGAAGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtcaggtgtctaagtaatctccctgtccttgtaacaaagcttccagtccc Alignment from Spaln_aa2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccatctgcgtcatgcattgttgaggggttaatcattgttattatttgtagAGACCAGAACAAATACCAGGGACGTGCTCACCTACTCAATGAAGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtcaggtgtctaagtaatctccctgtccttgtaacaaagcttccagtccc Alignment from Spaln_nt2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGCTG ccatctgcgtcatgcattgttgaggggttaatcattgttattatttgtagAGACCAGAACAAATACCAGGGACGTGCTCACCTACTCAATGAAGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTGT--CAGgtgtctaagtaatctccctgtccttgtaacaaagcttccagtc Alignment from Pairagon GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccatctgcgtcatgcattgttgaggggttaatcattgttattatttgtagAGACCAGAACAAATACCAGGGACGTGCTCACCTACTCAATGAAGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtcaggtgtctaagtaatctccctgtccttgtaacaaagcttccagtccc Alignment from Exonerate_protein2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGC ccatctgcgtcatgcattgttgaggggttaatcattgttattatttgtagAGACCAGAACAAATACCAGGGACGTGCTCACCTACTCAATGAAGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTGTCAGgtgtctaagtaatctccctgtccttgtaacaaagcttccagtccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGCTGCGACC- ccatctgcgtcatgcattgttgaggggttaatcattgttattatttgtagAGACCAGAACAAATACCAGGGACGTGCTCACCTACTCAATGAAGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTGTCAGGTGTCTAAgtaatctccctgtccttgtaacaaagcttccagtccc #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAA-GACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ctttatgagcattcaatgctagaaggtgctgagccccttcccacccacagAAAGAGAAG------GTCCCCAAACGACTCCCTTG-TGATCTGTTTCCCAATGAAGATGAACAGAGATCAggtaagcacggtaaattaatcatggtgagtacagcttgttaggagtttgca Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ctttatgagcattcaatgctagaaggtgctgagccccttcccacccacagAAAGAGAAG------GTCCCCAAACGACTCCCTTGTGATCTGTTTCCCAATGAAGATGAACAGAGATCAggtaagcacggtaaattaatcatggtgagtacagcttgttaggagtttgca Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ctttatgagcattcaatgctagaaggtgctgagccccttcccacccacagAAAGAGAAG------GTCCCCAAACGACTCCCTTGTGATCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaagcacggtaaattaatcatggtgagtacagcttgttaggagtttgca Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAA-GACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ctttatgagcattcaatgctagaaggtgctgagccccttcccacccacagAAAGAGAAG------GTCCCCAAACGACTCCCTTG-TGATCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaagcacggtaaattaatcatggtgagtacagcttgttaggagtttgca Alignment from Pairagon GAGGAGAAGGGTGATGTCCCCAAA-GACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ctttatgagcattcaatgctagaaggtgctgagccccttcccacccacagAAAGAGAAG------GTCCCCAAACGACTCCCTTG-TGATCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaagcacggtaaattaatcatggtgagtacagcttgttaggagtttgca Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ctttatgagcattcaatgctagaaggtgctgagccccttcccacCCACAGAAAGAGAAGGTCCCCAAACGACTCCCTTGTGATCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaagcacggtaaattaatcatggtgagtacagcttgttaggagtttgca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ctttatgagcattcaatgctagaaggtgctgagccccttcccacccacagAAAGAGAAG------GTCCCCAAACGACTCCCTTGTGATCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaagcacggtaaattaatcatggtgagtacagcttgttaggagtttgca #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATA-AAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATACAAGACAT-GCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATACAAGACATGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATACAAGACATGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATACAAGACATGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATA-AAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATACAAGACAT-GCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATACAAGACATGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATACAAGACATGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATACAAGACATGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct #### Ldb1_ID9697_3 --> 1 - 2 Original Alignment cCCAACTCCCATGTACCCACCT-ACATACCTGGAGCCTGGGATCgg acagtacaacagaaacaagtgcgaaactcacttcacaatgtctcttacagcCCAACTCCCATGTACCCACCTCACATACC-GGAGCCTGGGATTgggtgatcggactccactgcttaatactgttaagtcgtgcccctgcattatt Alignment from CESAR cCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCgg acagtacaacagaaacaagtgcgaaactcacttcacaatgtctcttacagcCCAACTCCCATGTACCCACCTCACATACCGGAGCCTGGGATTgggtgatcggactccactgcttaatactgttaagtcgtgcccctgcattatt Alignment from Spaln_aa2Genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG acagtacaacagaaacaagtgcgaaactcacttcacaatgtctcttacagCCCAACTCCCATGTACCCACCTCACATACCGGAGCCTGGGATTGGgtgatcggactccactgcttaatactgttaagtcgtgcccctgcattatt Alignment from Spaln_nt2Genome CCCAACTCCCATGTACCCACCT-ACATACCTGGAGCCTGGGATCGG acagtacaacagaaacaagtgcgaaactcacttcacaatgtctcttacagCCCAACTCCCATGTACCCACCTCACATACC-GGAGCCTGGGATTGGgtgatcggactccactgcttaatactgttaagtcgtgcccctgcattatt Alignment from Pairagon CCCAACTCCCATGTACCCACCT-ACATACCTGGAGCCTGGGATCGG acagtacaacagaaacaagtgcgaaactcacttcacaatgtctcttacagCCCAACTCCCATGTACCCACCTCACATACC-GGAGCCTGGGATTGGgtgatcggactccactgcttaatactgttaagtcgtgcccctgcattatt Alignment from Exonerate_protein2genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG acagtacaacagaaacaagtgcgaaactcacttcacaatgtctcttacagCCCAACTCCCATGTACCCACCTCACATACCGGAGCCTGGGATTGGgtgatcggactccactgcttaatactgttaagtcgtgcccctgcattatt Alignment from Exonerate_coding2genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG acagtacaacagaaacaagtgcgaaactcacttcacaatgtctcttacagCCCAACTCCCATGTACCCACCTCACATACCGGAGCCTGGGATTGGgtgatcggactccactgcttaatactgttaagtcgtgcccctgcattatt Alignment from GeneWise CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG acagtacaacagaaacaagtgcgaaactcacttcacaatgtctcttacagCCCAACTCCCATGTACCCACCTCACATACCGGAGCCTGGGATTGGgtgatcggactccactgcttaatactgttaagtcgtgcccctgcattatt #### Lipo1_ID6825_8 --> 0 - 0 Original Alignment GTAGGAAGAAGTGGTATACTTCAG-GCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatgacctgtcagcctggccaaattccttttgtcttccagGTAGGTAGAAGTGGTATTCTTCAACGCTTATG-TTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagttcttcaaatctctttttcacacttaatgatatgatagggttcaa Alignment from CESAR GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatgacctgtcagcctggccaaattccttttgtcttccagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagttcttcaaatctctttttcacacttaatgatatgatagggttcaa Alignment from Spaln_aa2Genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatgacctgtcagcctggccaaattccttttgtcttccagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagttcttcaaatctctttttcacacttaatgatatgatagggttcaa Alignment from Spaln_nt2Genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatgacctgtcagcctggccaaattccttttgtcttccagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagttcttcaaatctctttttcacacttaatgatatgatagggttcaa Alignment from Pairagon GTAGGAAGAAGTGGTATACTTCAG-GCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatgacctgtcagcctggccaaattccttttgtcttccagGTAGGTAGAAGTGGTATTCTTCAACGCTTATG-TTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagttcttcaaatctctttttcacacttaatgatatgatagggttcaa Alignment from Exonerate_protein2genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatgacctgtcagcctggccaaattccttttgtcttccagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagttcttcaaatctctttttcacacttaatgatatgatagggttcaa Alignment from Exonerate_coding2genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatgacctgtcagcctggccaaattccttttgtcttccagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagttcttcaaatctctttttcacacttaatgatatgatagggttcaa Alignment from GeneWise GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatgacctgtcagcctggccaaattccttttgtcttccagGTAGGTAGAAGTGGTATTCTTCAACGCTTATGTTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagttcttcaaatctctttttcacacttaatgatatgatagggttcaa #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAG-CGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagcttgaactaccaacatgaggtaagctcttggtccacttccagCCAGTGAGTGAGGAGCCGAT-TGTGCAACAGAGCCATCCTACCACTGTTACCTCACCTTCTCGACCTTTCCTGggtaaggtggttggaggggggcaaatcataccaacaggggtaagcctacct Alignment from CESAR CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagcttgaactaccaacatgaggtaagctcttggtccacttccagCCAGTGAGTGAGGAGCCGATTGTGCAACAGAGCCATCCTACCACTGTTACCTCACCTTCTCGACCTTTCCTGggtaaggtggttggaggggggcaaatcataccaacaggggtaagcctacct Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagcttgaactaccaacatgaggtaagctcttggtccacttccagCCAGTGAGTGAGGAGCCGATTGTGCAACAGAGCCATCCTACCACTGTTACCTCACCTTCTCGACCTTTCCTGGgtaaggtggttggaggggggcaaatcataccaacaggggtaagcctacct Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagcttgaactaccaacatgaggtaagctcttggtccacttccagCCAGTGAGTGAGGAGCCGATTGTGCAACAGAGCCATCCTACCACTGTTACCTCACCTTCTCGACCTTTCCTGGgtaaggtggttggaggggggcaaatcataccaacaggggtaagcctacct Alignment from Pairagon CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagcttgaactaccaacatgaggtaagctcttggtccacttccagCCAGTGAGTGAGGAGCCGATTGTGCAACAGAGCCATCCTACCACTGTTACCTCACCTTCTCGACCTTTCCTGGgtaaggtggttggaggggggcaaatcataccaacaggggtaagcctacct Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagcttgaactaccaacatgaggtaagctcttggtccacttccagCCAGTGAGTGAGGAGCCGATTGTGCAACAGAGCCATCCTACCACTGTTACCTCACCTTCTCGACCTTTCCTGGgtaaggtggttggaggggggcaaatcataccaacaggggtaagcctacct Alignment from Exonerate_coding2genome GA------GTGACCATGGATCCACCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTAC tatgacagcttgaactaccaacatgagGTAAGCTCTTGGTCCACTTCCAGCCAGTGAGTGAGGAGCCGATTGTGCAACAGAGCCATCCTACCACTGTTACCTCACCTTCTCGACCTTTCctgggtaaggtggttggaggggggcaaatcataccaacaggggtaagcctacct Alignment from GeneWise ---GTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagcttgaactaccaacatgaggtaagctcttggtccacttccagCCAGTGAGTGAGGAGCCGATTGTGCAACAGAGCCATCCTACCACTGTTACCTCACCTTCTCGACCTTTCCTGGgtaaggtggttggaggggggcaaatcataccaacaggggtaagcctacct #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCC-CGACCGCCCATTTGCGAAg atttctgaccccagaccctccccttcctaagatggtcatttttttttcagatCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCCAGAC-ACCAATCTGGGAAggtaagttgtcatcctacttctcctccctggccttaggttggatgagtgca Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgaccccagaccctccccttcctaagatggtcatttttttttcagatCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCCAGACACCAATCTGGGAAggtaagttgtcatcctacttctcctccctggccttaggttggatgagtgca Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagaccctccccttcctaagatggtcatttttttttcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCCAGACACCAATCTGGGAAGgtaagttgtcatcctacttctcctccctggccttaggttggatgagtgca Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagaccctccccttcctaagatggtcatttttttttcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCCAGACACCAATCTGGGAAGgtaagttgtcatcctacttctcctccctggccttaggttggatgagtgca Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagaccctccccttcctaagatggtcatttttttttcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCCAGACACCAATCTGGGAAGgtaagttgtcatcctacttctcctccctggccttaggttggatgagtgca Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagaccctccccttcctaagatggtcatttttttttcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCCAGACACCAATCTGGGAAGgtaagttgtcatcctacttctcctccctggccttaggttggatgagtgca Alignment from Exonerate_coding2genome atttctgaccccagaccctccccttcctaagatggtcatttttttttcagatctaaatgagtgcacaaagccccatctgtgtggtgatggtggcttctgcatcaacttcccaggccactacacatgcaactgttatcctggttacaggctcaaggcctcccagacaccaatctgggaaggtaagttgtcatcctacttctcctccctggccttaggttggatgagtgca Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagaccctccccttcctaagatggtcatttttttttcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCCAGACACCAATCTGGGAAGgtaagttgtcatcctacttctcctccctggccttaggttggatgagtgca #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAA-CCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccatacttgtatcagaccatcctgagtcttctctgctatccccagatATTGATGAATGTCATGACCCTAGCACCTGCCCAGATGGGAAGTGTGAAAATAAACCTTG-TAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGAGGTGGGACATGCCATggtgagtcaaatccagcctctcccatagggtttgtagggcccccagatgga Alignment from CESAR acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccatacttgtatcagaccatcctgagtcttctctgctatccccagatATTGATGAATGTCATGACCCTAGCACCTGCCCAGATGGGAAGTGTGAAAATAAACCTTGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGAGGTGGGACATGCCATggtgagtcaaatccagcctctcccatagggtttgtagggcccccagatgga Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgtatcagaccatcctgagtcttctctgctatccccagATATTGATGAATGTCATGACCCTAGCACCTGCCCAGATGGGAAGTGTGAAAATAAACCTTGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGAGGTGGGACATGCCATGgtgagtcaaatccagcctctcccatagggtttgtagggcccccagatgga Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgtatcagaccatcctgagtcttctctgctatccccagATATTGATGAATGTCATGACCCTAGCACCTGCCCAGATGGGAAGTGTGAAAATAAACCTTGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGAGGTGGGACATGCCATGgtgagtcaaatccagcctctcccatagggtttgtagggcccccagatgga Alignment from Pairagon ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgtatcagaccatcctgagtcttctctgctatccccagATATTGATGAATGTCATGACCCTAGCACCTGCCCAGATGGGAAGTGTGAAAATAAACCTTGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGAGGTGGGACATGCCATGgtgagtcaaatccagcctctcccatagggtttgtagggcccccagatgga Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgtatcagaccatcctgagtcttctctgctatccccagATATTGATGAATGTCATGACCCTAGCACCTGCCCAGATGGGAAGTGTGAAAATAAACCTTGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGAGGTGGGACATGCCATGgtgagtcaaatccagcctctcccatagggtttgtagggcccccagatgga Alignment from Exonerate_coding2genome tggcaccatacttgtatcagaccatcctgagtcttctctgctatccccagatattgatgaatgtcatgaccctagcacctgcccagatgggaagtgtgaaaataaaccttgtagcttcaggtgcattgcttgccagcctggttaccgaagccagggaggtgggacatgccatggtgagtcaaatccagcctctcccatagggtttgtagggcccccagatgga Alignment from GeneWise ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTGATGT tggcaccatacttgtatcagaccatcctgagtcttctctgctatccccagATATTGATGAATGTCATGACCCTAGCACCTGCCCAGATGGGAAGTGTGAAAATAAACCTTGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGAGGTGGGACATGCCATGGTGAgtcaaatccagcctctcccatagggtttgtagggcccccagatgga #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGG-GAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggcccaatatgcatttacaatgtttttctttcccccctaggcTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCAGCGAATGGTTGG-GCAACACAAGGACAAGgtcgggccaaattcacattacatgacgggagcttggttggatgaagtggt Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggcccaatatgcatttacaatgtttttctttcccccctaggcTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCAGCGAATGGTTGGGCAACACAAGGACAAGgtcgggccaaattcacattacatgacgggagcttggttggatgaagtggt Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggcccaatatgcatttacaatgtttttctttcccccctagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCAGCGAATGGTTGGGCAACACAAGGACAAGgtcgggccaaattcacattacatgacgggagcttggttggatgaagtggt Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGG-GAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggcccaatatgcatttacaatgtttttctttcccccctagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCAGCGAATGGTTGG-GCAACACAAGGACAAGgtcgggccaaattcacattacatgacgggagcttggttggatgaagtggt Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGG-GAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggcccaatatgcatttacaatgtttttctttcccccctagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCAGCGAATGGTTGG-GCAACACAAGGACAAGgtcgggccaaattcacattacatgacgggagcttggttggatgaagtggt Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggcccaatatgcatttacaatgtttttctttcccccctagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCAGCGAATGGTTGGGCAACACAAGGACAAGgtcgggccaaattcacattacatgacgggagcttggttggatgaagtggt Alignment from Exonerate_coding2genome aatggggtggggcccaatatgcatttacaatgtttttctttcccccctaggctaccccaatgaggaggctgcagaggtagtgctggtttcattgcagcgaatggttgggcaacacaaggacaaggtcgggccaaattcacattacatgacgggagcttggttggatgaagtggt Alignment from GeneWise -------------CCGTGCATCTCCACAGGCGTGTTT------------GGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG AATGGGGTGGGGCCCAATATGCATTTACAATGTTTTTCTTTCCCCCCTAGGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCAGCGAATGGTTGGGCAACACAAGGACAAGgtcgggccaaattcacattacatgacgggagcttggttggatgaagtggt #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTT-CCCCATTATTTCCCAGTAg ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCC-TTATTTCCCAGTAggtaagcacaagtggctcctatgcttgaagggaccctacgtccactcattt Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCCTTATTTCCCAGTAggtaagcacaagtggctcctatgcttgaagggacccctgttcactcctcct Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCCTTATTTCCCAGTAGgtaagcacaagtggctcctatgcttgaagggaccctacgtccactcattt Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCCTTATTTCCCAGTAGGTaagcacaagtggctcctatgcttgaagggaccctacgtccactcattt Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCCTTATTTCCCAGTAGGTaagcacaagtggctcctatgcttgaagggaccctacgtccactcattt Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCCTTATTTCCCAGTAggtaagcacaagtggctcctatgcttgaagggaccctacgtccactcattt Alignment from Exonerate_coding2genome ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcaggtggatcggctcattatctgtgtgtgcttggagaaagaagagggcatttacagggaacatcttcccccttatttcccagtaggtaagcacaagtggctcctatgcttgaagggaccctacgtccactcattt Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCCTTATTTCCCAGTAGGTaagcacaagtggctcctatgcttgaagggaccctacgtccactcattt #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg taagggcagataattccacctggatcaattccattttgccttcgaaccagtTTTGGAGTGTTATTGTGGGAGCTGCTGACTGGCAAACGTGCCAT-CCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCTATTCCATCTACTTGTCCTGAGCCCTTCGCACAACTAATGGCTggtgagtcagataagttcacatggagcagaagtgcaggccctttggtgcga Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg taagggcagataattccacctggatcaattccattttgccttcgaaccagtTTTGGAGTGTTATTGTGGGAGCTGCTGACTGGCAAACGTGCCATCCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCTATTCCATCTACTTGTCCTGAGCCCTTCGCACAACTAATGGCTggtgagtcagataagttcacatggagcagaagtgcaggccctttggtgcga Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG taagggcagataattccacctggatcaattccattttgccttcgaaccagTTTTGGAGTGTTATTGTGGGAGCTGCTGACTGGCAAACGTGCCATCCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCTATTCCATCTACTTGTCCTGAGCCCTTCGCACAACTAATGGCTGgtgagtcagataagttcacatggagcagaagtgcaggccctttggtgcga Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG taagggcagataattccacctggatcaattccattttgccttcgaaccagTTTTGGAGTGTTATTGTGGGAGCTGCTGACTGGCAAACGTGCCATCCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCTATTCCATCTACTTGTCCTGAGCCCTTCGCACAACTAATGGCTGgtgagtcagataagttcacatggagcagaagtgcaggccctttggtgcga Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGG-GGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG taagggcagataattccacctggatcaattccattttgccttcgaaccagTTTTGGAGTGTTATTGTGGGAGCTGCTGACTGGCAAACGTGCCAT-CCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCTATTCCATCTACTTGTCCTGAGCCCTTCGCACAACTAATGGCTGgtgagtcagataagttcacatggagcagaagtgcaggccctttggtgcga Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG taagggcagataattccacctggatcaattccattttgccttcgaaccagTTTTGGAGTGTTATTGTGGGAGCTGCTGACTGGCAAACGTGCCATCCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCTATTCCATCTACTTGTCCTGAGCCCTTCGCACAACTAATGGCTGgtgagtcagataagttcacatggagcagaagtgcaggccctttggtgcga Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG taagggcagataattccacctggatcaattccattttgccttcgaaccagTTTTGGAGTGTTATTGTGGGAGCTGCTGACTGGCAAACGTGCCATCCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCTATTCCATCTACTTGTCCTGAGCCCTTCGCACAACTAATGGCTGgtgagtcagataagttcacatggagcagaagtgcaggccctttggtgcga Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG taagggcagataattccacctggatcaattccattttgccttcgaaccagTTTTGGAGTGTTATTGTGGGAGCTGCTGACTGGCAAACGTGCCATCCGAGGCATTGACTGTCTCGCAGTGGTTTATGGTGTGGCTGTAAATAAATTAACATTACCTATTCCATCTACTTGTCCTGAGCCCTTCGCACAACTAATGGCTGgtgagtcagataagttcacatggagcagaagtgcaggccctttggtgcga #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCC-TACATCGGCAGCTACCTCag aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACA-CAGTAGCTACCTCaggtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACACAGTAGCTACCTCaggtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACACAGTAGCTACCTCAGgtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCC-TACATCGGCAGCTACCTCAG aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACA-CAGTAGCTACCTCAGgtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGG-CCTACATCGGCAGCTACCTCAG aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACA-CAGTAGCTACCTCAGgtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Exonerate_protein2genome aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccaggggatgacatcagctctcttcagcaggaaatcaccatccttcgtgaatgccgccaccccaatgttgtggccctacacagtagctacctcaggtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Exonerate_coding2genome aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccaggggatgacatcagctctcttcagcaggaaatcaccatccttcgtgaatgccgccaccccaatgttgtggccctacacagtagctacctcaggtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACACAGTAGCTACCTCAGgtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca #### Map4k2_ID1625_5 --> 2 - 0 Original Alignment ccACTGGGCCCCTGGAAGAA-CGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cctaaatatgtcaattccttctatctaacttccatttcttttctgtttagctACTGGACCACTTGAAGAGCAGGC-AATTGCCTATGTTTGTTGGGCTGCCCTTAGGgtaagggatttgcagttagattgcccattaggccacccatggatgagctg Alignment from CESAR ccACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cctaaatatgtcaattccttctatctaacttccatttcttttctgtttagctACTGGACCACTTGAAGAGCAGGCAATTGCCTATGTTTGTTGGGCTGCCCTTAGGgtaagggatttgcagttagattgcccattaggccacccatggatgagctg Alignment from Spaln_aa2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cctaaatatgtcaattccttctatctaacttccatttcttttctgtttagCTACTGGACCACTTGAAGAGCAGGCAATTGCCTATGTTTGTTGGGCTGCCCTTAGGgtaagggatttgcagttagattgcccattaggccacccatggatgagctg Alignment from Spaln_nt2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cctaaatatgtcaattccttctatctaacttccatttcttttctgtttagCTACTGGACCACTTGAAGAGCAGGCAATTGCCTATGTTTGTTGGGCTGCCCTTAGGgtaagggatttgcagttagattgcccattaggccacccatggatgagctg Alignment from Pairagon CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cctaaatatgtcaattccttctatctaacttccatttcttttctgtttagCTACTGGACCACTTGAAGAGCAGGCAATTGCCTATGTTTGTTGGGCTGCCCTTAGGgtaagggatttgcagttagattgcccattaggccacccatggatgagctg Alignment from Exonerate_protein2genome cctaaatatgtcaattccttctatctaacttccatttcttttctgtttagctactggaccacttgaagagcaggcaattgcctatgtttgttgggctgcccttagggtaagggatttgcagttagattgcccattaggccacccatggatgagctg Alignment from Exonerate_coding2genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAGG cctaaatatgtcaattccttctatctaacttccatttcttttctgtttagCTACTGGACCACTTGAAGAGCAGGCAATTGCCTATGTTTGTTGGGCTGCCCTT-AGGgtaagggatttgcagttagattgcccattaggccacccatggatgagctg Alignment from GeneWise CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cctaaatatgtcaattccttctatctaacttccatttcttttctgtttagCTACTGGACCACTTGAAGAGCAGGCAATTGCCTATGTTTGTTGGGCTGCCCTTAGGgtaagggatttgcagttagattgcccattaggccacccatggatgagctg #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment TAAG------ GGTGCCAACCTTCTGCTCACTCTG-CAGGGTGATGTCAAGCTGg TAAGGTAGGAgtaggtatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCCAGG-AGAGGTGCAATTGtgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from CESAR TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg TAAGgtaggagttagtatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCCAGGAGAGGTGCAATTGtgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Spaln_aa2Genome TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtaggtatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCCAGGAGAGGTGCAATTGTgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Spaln_nt2Genome TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtaggtatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCCAGGAGAGGTGCAATTGTgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Pairagon TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGGCGGACTTTGGGGTGTCAGGCGAGCTG------- TAAGgtaggagtaggtatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGC---------------------------------CAGGAGAGGTGCAATTGTgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Exonerate_protein2genome taaggtaggagtaggtatccaggtggttattatttctacatgtatattagggtgcaaacctcctgctcacattgccaggagaggtgcaattgtgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Exonerate_coding2genome taaggtaggagtaggtatccaggtggttattatttctacatgtatattagggtgcaaacctcctgctcacattgccaggagaggtgcaattgtgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from GeneWise TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtaggtatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCCAGGAGAGGTGCAATTGTgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGT-TCTTTCATTGGCACTCCATACtg tggtgtagggcatatatgtacccccaggctgcatctgttatctttcatagccGATTTTGGGGTCACGGATGGAGCTACAACATCTGTTGCTAAGAGGCACCTCTCTCA-AGGCAGTCCATACtggtatcctgttccagagcatgggtgaagagcatatggaaggatgacctgat Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtagggcatatatgtacccccaggctgcatctgttatctttcatagccGATTTTGGGGTCACGGATGGAGCTACAACATCTGTTGCTAAGAGGCACCTCTCTCAAGGCAGTCCATACtggtatcctgttccagagcatgggtgaagagcatatggaaggatgacctgat Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtagggcatatatgtacccccaggctgcatctgttatctttcatagCCGATTTTGGGGTCACGGATGGAGCTACAACATCTGTTGCTAAGAGGCACCTCTCTCAAGGCAGTCCATACTGgtatcctgttccagagcatgggtgaagagcatatggaaggatgacctgat Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCG-AGCTGACAGCATCTGTGGCCAAAAGACGT-TCTTTCATTGGCACTCCATACTG tggtgtagggcatatatgtacccccaggctgcatctgttatctttcatagCCGATTTTGGGGTCACGGATGGAGCT-ACAACATCTGTTGCTAAGAGGCACCTCTCTCA-AGGCAGTCCATACTGgtatcctgttccagagcatgggtgaagagcatatggaaggatgacctgat Alignment from Pairagon CAAGCTGGCGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtagggcatatatgtacccccaggctgcatctgttatctttcatagccgattttggggtcacggatggagctacaacatctgttgctaagaggcacctctctcaag--------------------------------------------------------------------GCAGTCCATACTGgtatcctgttccagagcatgggtgaagagcatatggaaggatgacctgat Alignment from Exonerate_protein2genome tggtgtagggcatatatgtacccccaggctgcatctgttatctttcatagccgattttggggtcacggatggagctacaacatctgttgctaagaggcacctctctcaaggcagtccatactggtatcctgttccagagcatgggtgaagagcatatggaaggatgacctgat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtagggcatatatgtacccccaggctgcatctgttatctttcatagCCGATTTTGGGGTCACGGATGGAGCTACAACATCTGTTGCTAAGAGGCACCTCTCTCAAGGCAGTCCATACTGgtatcctgttccagagcatgggtgaagagcatatggaaggatgacctgat #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCTTCTGCAG caatgcctaatctgcatatggatgggtgctttctcttccgtttccttcaggACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACTAAGAATCCAAAGCAAGAGGCCAA-TGCTGAGAGGCTACTACAGgtactgaccagagaaaaggtggaagattttgaaaaagggactcctccccc Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG caatgcctaatctgcatatggatgggtgctttctcttccgtttccttcaggACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACTAAGAATCCAAAGCAAGAGGCCAATGCTGAGAGGCTACTACAGgtactgaccagagaaaaggtggaagattttgaaaaagggatgttttgggg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG caatgcctaatctgcatatggatgggtgctttctcttccgtttccttcagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACTAAGAATCCAAAGCAAGAGGCCAATGCTGAGAGGCTACTACAGgtactgaccagagaaaaggtggaagattttgaaaaagggactcctccccc Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCTTCTGCAG caatgcctaatctgcatatggatgggtgctttctcttccgtttccttcagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACTAAGAATCCAAAGCAAGAGGCC-AATGCTGAGAGGCTACTACAGgtactgaccagagaaaaggtggaagattttgaaaaagggactcctccccc Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCT--------------------------------------------------------- caatgcctaatctgcatatggatgggtgctttctcttccgtttccttcagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACTAAGAATCCAAAGCAAGAGGCCAAT-GCTGAGAGGCTACTACAGGTACTGACCAGAGAAAAGGTGGAAGATTTTGAAAAAGGGACTCCTCCCCC Alignment from Exonerate_protein2genome caatgcctaatctgcatatggatgggtgctttctcttccgtttccttcaggactcagaattttcaccacttccgcaagctagccctgactaagaatccaaagcaagaggccaatgctgagaggctactacaggtactgaccagagaaaaggtggaagattttgaaaaagggactcctccccc Alignment from Exonerate_coding2genome caatgcctaatctgcatatggatgggtgctttctcttccgtttccttcaggactcagaattttcaccacttccgcaagctagccctgactaagaatccaaagcaagaggccaatgctgagaggctactacaggtactgaccagagaaaaggtggaagattttgaaaaagggactcctccccc Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG caatgcctaatctgcatatggatgggtgctttctcttccgtttccttcagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACTAAGAATCCAAAGCAAGAGGCCAATGCTGAGAGGCTACTACAGgtactgaccagagaaaaggtggaagattttgaaaaagggactcctccccc #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACG-ACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACACACCCAAC-TCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACACACCCAACTCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACACACCCAACTCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Spaln_nt2Genome CACCCATTCACG-ACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACACACCCAAC-TCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Pairagon CACCCATTCACG-ACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACACACCCAAC-TCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Exonerate_protein2genome gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagcatcctttcacacacccaactctccctccagcacttcttacccaactccttgacaagactagtgatccccatttaggtaccctctcccctgaagacagtaagctaaaggtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Exonerate_coding2genome gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagcatcctttcacacacccaactctccctccagcacttcttacccaactccttgacaagactagtgatccccatttaggtaccctctcccctgaagacagtaagctaaaggtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACACACCCAACTCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga #### Map4k2_ID1634_13 --> 0 - 1 Original Alignment ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCT-GAGAGGACCCCCTCCGAGATCCAGt taagtctactggtgcatagcaagataacttcttcttccttcctgctatagACCCATGATATGTTCCCAGATACTATCCATTCCCACAGCCATCACGGTCCAGCTCGAGAGGA-TCCTTCAGAGATCCAAtgtattctatcaggtggtgaaaaaatcctaatgagatgaggtaactgcaga Alignment from CESAR ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt taagtctactggtgcatagcaagataacttcttcttccttcctgctatagACCCATGATATGTTCCCAGATACTATCCATTCCCACAGCCATCACGGTCCAGCTCGAGAGGATCCTTCAGAGATCCAAtgtattctatcaggtggtgaaaaaatcctaatgagatgaggtaactgcaga Alignment from Spaln_aa2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT taagtctactggtgcatagcaagataacttcttcttccttcctgctatagACCCATGATATGTTCCCAGATACTATCCATTCCCACAGCCATCACGGTCCAGCTCGAGAGGATCCTTCAGAGATCCAATgtattctatcaggtggtgaaaaaatcctaatgagatgaggtaactgcaga Alignment from Spaln_nt2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCT-GAGAGGACCCCCTCCGAGATCCAGT taagtctactggtgcatagcaagataacttcttcttccttcctgctatagACCCATGATATGTTCCCAGATACTATCCATTCCCACAGCCATCACGGTCCAGCTCGAGAGGA-TCCTTCAGAGATCCAATgtattctatcaggtggtgaaaaaatcctaatgagatgaggtaactgcaga Alignment from Pairagon ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCT-GAGAGGACCCCCTCCGAGATCCAGT taagtctactggtgcatagcaagataacttcttcttccttcctgctatagACCCATGATATGTTCCCAGATACTATCCATTCCCACAGCCATCACGGTCCAGCTCGAGAGGA-TCCTTCAGAGATCCAATgtattctatcaggtggtgaaaaaatcctaatgagatgaggtaactgcaga Alignment from Exonerate_protein2genome taagtctactggtgcatagcaagataacttcttcttccttcctgctatagacccatgatatgttcccagatactatccattcccacagccatcacggtccagctcgagaggatccttcagagatccaatgtattctatcaggtggtgaaaaaatcctaatgagatgaggtaactgcaga Alignment from Exonerate_coding2genome taagtctactggtgcatagcaagataacttcttcttccttcctgctatagacccatgatatgttcccagatactatccattcccacagccatcacggtccagctcgagaggatccttcagagatccaatgtattctatcaggtggtgaaaaaatcctaatgagatgaggtaactgcaga Alignment from GeneWise ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT taagtctactggtgcatagcaagataacttcttcttccttcctgctatagACCCATGATATGTTCCCAGATACTATCCATTCCCACAGCCATCACGGTCCAGCTCGAGAGGATCCTTCAGAGATCCAATgtattctatcaggtggtgaaaaaatcctaatgagatgaggtaactgcaga #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAAT-GCCCAGTCCTGCTCCCCAg ctacagaacaacgttttatggggccagtagcctggcttctctgtactcagGAACTTGATTCCCCAGATGATGCCATTGGAACTATCAAGCAAGCACCATTCCTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATCGCCC-GTCCTGT---CCAggtaagatcagggaatggtaagccacatggtatgttgtggacatgccaggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg ctacagaacaacgttttatggggccagtagcctggcttctctgtactcagGAACTTGATTCCCCAGATGATGCCATTGGAACTATCAAGCAAGCACCATTCCTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATCGCCCGTCCTGT---CCAggtaagatcagggaatggtaagccacatggtatgttgtggacatgccaggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaacgttttatggggccagtagcctggcttctctgtactcagGAACTTGATTCCCCAGATGATGCCATTGGAACTATCAAGCAAGCACCATTCCTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATCGCCCGTCCTGT---CCAGgtaagatcagggaatggtaagccacatggtatgttgtggacatgccaggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaacgttttatggggccagtagcctggcttctctgtactcagGAACTTGATTCCCCAGATGATGCCATTGGAACTATCAAGCAAGCACCATTCCTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATCGCCCGTCCTG---TCCAGgtaagatcagggaatggtaagccacatggtatgttgtggacatgccaggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaacgttttatggggccagtagcctggcttctctgtactcagGAACTTGATTCCCCAGATGATGCCATTGGAACTATCAAGCAAGCACCATTCCTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATCGCCCGTCCTG---TCCAGgtaagatcagggaatggtaagccacatggtatgttgtggacatgccaggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaacgttttatggggccagtagcctggcttctctgtactcagGAACTTGATTCCCCAGATGATGCCATTGGAACTATCAAGCAAGCACCATTCCTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATCGCCCGTCCTGT---CCAGgtaagatcagggaatggtaagccacatggtatgttgtggacatgccaggg Alignment from Exonerate_coding2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCC ctacagaacaacgttttatggggccagtagcctggcttctctgtactcagGAACTTGATTCCCCAGATGATGCCATTGGAACTATCAAGCAAGCACCATTCCTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATCGCCCGTCCTGTCCAGgtaagatcagggaatggtaagccacatggtatgttgtggacatgccaggg Alignment from GeneWise TGGAGGAAAGGAGCCTGACT------ATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG CTACAGAACAACGTTTTATGGGGCCAGTAGCCTGGCTTCTCTGTACTCAGGAACTTGATTCCCCAGATGATGCCATTGGAACTATCAAGCAAGCACCATTCCTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATCGCCCGTCCTGT---CCAGgtaagatcagggaatggtaagccacatggtatgttgtggacatgccaggg #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGCCATGGG-CTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctaacatcatcctctgcactgccagCAGTCATCCTGTTATGGTCCTTCCTCCCA-CCCGAAGGTCCCTgtgagcggtgccatgatgtcctagctcactggttcttatcttccttccca Alignment from CESAR CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctaacatcatcctctgcactgccagCAGTCATCCTGTTATGGTCCTTCCTCCCACCCGAAGGTCCCTgtgagcggtgccatgatgtcctagctcactggatccccatctttcctcca Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctaacatcatcctctgcactgccagCAGTCATCCTGTTATGGTCCTTCCTCCCACCCGAAGGTCCCTgtgagcggtgccatgatgtcctagctcactggttcttatcttccttccca Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGC-TTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctaacatcatcctctgcactgccagCAGTCATCCTGTTATGGTCCTTCCTCCCA-CCCGAAGGTCCCTgtgagcggtgccatgatgtcctagctcactggttcttatcttccttccca Alignment from Pairagon CGATCATCCTGCCATGG-GCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctaacatcatcctctgcactgccagCAGTCATCCTGTTATGGTCCTTCCTCCCA-CCCGAAGGTCCCTgtgagcggtgccatgatgtcctagctcactggttcttatcttccttccca Alignment from Exonerate_protein2genome GCCATGGGCT TCCTCCCACCCCCAAGGT TAACTGGATGgtaagggtgggaatcctaacatcatcctctgcactgccagcagtcatcctgttatggtccttcctcccacccgaaggtccctgtgagcggtgccatgatgtcctagctcactggTTCTTATCTTCCTTCCCA Alignment from Exonerate_coding2genome taactggatggtaagggtgggaatcctaacatcatcctctgcactgccagcagtcatcctgttatggtccttcctcccacccgaaggtccctgtgagcggtgccatgatgtcctagctcactggttcttatcttccttccca Alignment from GeneWise TGCCATGGGCTTCCTCCCACCCCCAA taactggatggtaagggtgggaatcctaacatcatcctctgcactgccagcagtcatcctgttatggtccttcctcccacccgaaggtccctgtgagcggtgccatgatgtcctagCTCACTGGT---TCTTATCTTCCTTC #### Map4k2_ID1649_28 --> 2 - 1 Original Alignment agGGGATCCCAGGTTCTGCACAGCAGGTGATC-CAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc aatgctagctcaataaccagttagaggtttgcttgctaatttcattgcagagGGGATTCCAGGGCCTGCACAACAAGTGATACCAGGTAGATC-AGACAAAGTCTTGGTTAGCTTTGAAcgtaggtaactgaatgtcaaaaggaggttgcaaacagggtgggagcaaagc Alignment from CESAR agGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc aatgctagctcaataaccagttagaggtttgcttgctaatttcattgcagagGGGATTCCAGGGCCTGCACAACAAGTGATACCAGGTAGATCAGACAAAGTCTTGGTTAGCTTTGAAcgtaggtaactgaatgtcaaaaggaggttgcaaacagggtgggagcaaagc Alignment from Spaln_aa2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC aatgctagctcaataaccagttagaggtttgcttgctaatttcattgcagAGGGGATTCCAGGGCCTGCACAACAAGTGATACCAGGTAGATCAGACAAAGTCTTGGTTAGCTTTGAACgtaggtaactgaatgtcaaaaggaggttgcaaacagggtgggagcaaagc Alignment from Spaln_nt2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC aatgctagctcaataaccagttagaggtttgcttgctaatttcattgcagAGGGGATTCCAGGGCCTGCACAACAAGTGATACCAGGTAGATCAGACAAAGTCTTGGTTAGCTTTGAACgtaggtaactgaatgtcaaaaggaggttgcaaacagggtgggagcaaagc Alignment from Pairagon AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGG-------GACACAGTCCTGGTCAGCTTTGAAC aatgctagctcaataaccagttagaggtttgcttgctaatttcattgcagAGGGGATTCCAGGGCCTGCACAACAAGTGATAC-------CAGGTAGATCAGACAAAGTCTTGGTTAGCTTTGAACgtaggtaactgaatgtcaaaaggaggttgcaaacagggtgggagcaaagc Alignment from Exonerate_protein2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC aatgctagctcaataaccagttagaggtttgcttgctaatttcattgcagAGGGGATTCCAGGGCCTGCACAACAAGTGATACCAGGTAGATCAGACAAAGTCTTGGTTAGCTTTGAACgtaggtaactgaatgtcaaaaggaggttgcaaacagggtgggagcaaagc Alignment from Exonerate_coding2genome aatgctagctcaataaccagttagaggtttgcttgctaatttcattgcagaggggattccagggcctgcacaacaagtgataccaggtagatcagacaaagtcttggttagctttgaacgtaggtaactgaatgtcaaaaggaggttgcaaacagggtgggagcaaagc Alignment from GeneWise AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC aatgctagctcaataaccagttagaggtttgcttgctaatttcattgcagAGGGGATTCCAGGGCCTGCACAACAAGTGATACCAGGTAGATCAGACAAAGTCTTGGTTAGCTTTGAACgtaggtaactgaatgtcaaaaggaggttgcaaacagggtgggagcaaagc #### March5_ID7302_4 --> 0 - 1 Original Alignment GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTT-CTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCCTTCTGA-TGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from CESAR GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCCTTCTGATGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Spaln_aa2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCCTTCTGATGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Spaln_nt2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCCTTCTGATGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Pairagon GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCCTTCTGATGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Exonerate_protein2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCCTTCTGATGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Exonerate_coding2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCCTTCTGATGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from GeneWise GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCCTTCTGATGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGG-TTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag cccttctgacccttcactctgtgggtttatggcccctctgctgtccctagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGCTTGCCCC-CACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaaggctgcagggatagctatacatctatggcaccatgctgcacacttg Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag cccttctgacccttcactctgtgggtttatggcccctctgctgtccctagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaaggctgcagggatagctatacatctatggcaccatgctgcacacttg Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccttctgacccttcactctgtgggtttatggcccctctgctgtccctagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaaggctgcagggatagctatacatctatggcaccatgctgcacacttg Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccttctgacccttcactctgtgggtttatggcccctctgctgtccctagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaaggctgcagggatagctatacatctatggcaccatgctgcacacttg Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccttctgacccttcactctgtgggtttatggcccctctgctgtccctagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaaggctgcagggatagctatacatctatggcaccatgctgcacacttg Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccttctgacccttcactctgtgggtttatggcccctctgctgtccctagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaaggctgcagggatagctatacatctatggcaccatgctgcacacttg Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccttctgacccttcactctgtgggtttatggcccctctgctgtccctagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaaggctgcagggatagctatacatctatggcaccatgctgcacacttg Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccttctgacccttcactctgtgggtttatggcccctctgctgtccctagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaaggctgcagggatagctatacatctatggcaccatgctgcacacttg #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGG-AAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatacagtatgatggcttggaggttgtgtgtgtctgtgtcttgtagctGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGACAGAGCCA-CAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACC---GCACCGTCTACAgtaaggcctacagttactctccaagagactaagtgcactactttagaggc Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatacagtatgatggcttggaggttgtgtgtgtctgtgtcttgtagctGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGACAGAGCCACAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACC---GCACCGTCTACAgtaaggcctacagttactctccaagagactaagtgcactactttagaggc Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatacagtatgatggcttggaggttgtgtgtgtctgtgtcttgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGACAGAGCCACAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACC---GCACCGTCTACAgtaaggcctacagttactctccaagagactaagtgcactactttagaggc Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAA-AGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatacagtatgatggcttggaggttgtgtgtgtctgtgtcttgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGACAGAGCCA-CAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAG---ACTACCGCACCGTCTACAgtaaggcctacagttactctccaagagactaagtgcactactttagaggc Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatacagtatgatggcttggaggttgtgtgtgtctgtgtcttgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGACAGAGCCACAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTA---CCGCACCGTCTACAgtaaggcctacagttactctccaagagactaagtgcactactttagaggc Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatacagtatgatggcttggaggttgtgtgtgtctgtgtcttgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGACAGAGCCACAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACC---GCACCGTCTACAgtaaggcctacagttactctccaagagactaagtgcactactttagaggc Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatacagtatgatggcttggaggttgtgtgtgtctgtgtcttgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGACAGAGCCACAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACC---GCACCGTCTACAgtaaggcctacagttactctccaagagactaagtgcactactttagaggc Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatacagtatgatggcttggaggttgtgtgtgtctgtgtcttgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGGCGACAGAGCCACAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACC---GCACCGTCTACAgtaaggcctacagttactctccaagagactaagtgcactactttagaggc #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATT-GTTCATAGAGATCTAAAG atgctttggtgtatcaatctaatatactttttccttccccctccgtgcagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTCGTTC-TAGAGATCTAAAGgtcactgatgttcctatccccatgatctgctgtgagggggccaggtggcc Alignment from CESAR ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctttggtgtatcaatctaatatactttttccttccccctccgtgcagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtcactgatgttcctatccccatgatctgctgtgagggggccaggtggcc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctttggtgtatcaatctaatatactttttccttccccctccgtgcagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtcactgatgttcctatccccatgatctgctgtgagggggccaggtggcc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctttggtgtatcaatctaatatactttttccttccccctccgtgcagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtcactgatgttcctatccccatgatctgctgtgagggggccaggtggcc Alignment from Pairagon ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctttggtgtatcaatctaatatactttttccttccccctccgtgcagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtcactgatgttcctatccccatgatctgctgtgagggggccaggtggcc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctttggtgtatcaatctaatatactttttccttccccctccgtgcagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtcactgatgttcctatccccatgatctgctgtgagggggccaggtggcc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctttggtgtatcaatctaatatactttttccttccccctccgtgcagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtcactgatgttcctatccccatgatctgctgtgagggggccaggtggcc Alignment from GeneWise ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctttggtgtatcaatctaatatactttttccttccccctccgtgcagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtcactgatgttcctatccccatgatctgctgtgagggggccaggtggcc #### Mark2_ID2116_5 --> 2 - 1 Original Alignment ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACT-CTCTACCTTGTCATGGAGTATGCCAGTGGCg agagtggacctgctcacagatgtcaccctcactccagtctctctgcccagttAAGTGGTTTGATATC------ATTGAGAAGACACCTTTACT-AGTAATGGAGTATGCCAGTGGTggtgcatctcaagttgctcccagtgtttattggtgcttgcctatgtacaga Alignment from CESAR ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg agagtggacctgctcacagatgtcaccctcactccagtctctctgcccagttAAGTGGTTTGATATCATT------GAGAAGACACCTTTACTAGTAATGGAGTATGCCAGTGGTggtgcatctcaagttgctcccagtgtttattggtgcttgcctatgtacaga Alignment from Spaln_aa2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG agagtggacctgctcacagatgtcaccctcactccagtctctctgcccagTTAAGTGGTTTGATATCATT------GAGAAGACACCTTTACTAGTAATGGAGTATGCCAGTGGTGgtgcatctcaagttgctcccagtgtttattggtgcttgcctatgtacaga Alignment from Spaln_nt2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG agagtggacctgctcacagatgtcaccctcactccagtctctctgcccagTTAAGTGGTTTGATATCAT------TGAGAAGACACCTTTACTAGTAATGGAGTATGCCAGTGGTGgtgcatctcaagttgctcccagtgtttattggtgcttgcctatgtacaga Alignment from Pairagon TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG agagtggacctgctcacagatgtcaccctcactccagtctctctgcccagTTAAGTGGTTTGATATCAT------TGAGAAGACACCTTTACTAGTAATGGAGTATGCCAGTGGTGgtgcatctcaagttgctcccagtgtttattggtgcttgcctatgtacaga Alignment from Exonerate_protein2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG agagtggacctgctcacagatgtcaccctcactccagtctctctgcccagTTAAGTGGTTTGATATCATT------GAGAAGACACCTTTACTAGTAATGGAGTATGCCAGTGGTGgtgcatctcaagttgctcccagtgtttattggtgcttgcctatgtacaga Alignment from Exonerate_coding2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG agagtggacctgctcacagatgtcaccctcactccagtctctctgcccagTTAAGTGGTTTGATATCATT------GAGAAGACACCTTTACTAGTAATGGAGTATGCCAGTGGTGgtgcatctcaagttgctcccagtgtttattggtgcttgcctatgtacaga Alignment from GeneWise TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG agagtggacctgctcacagatgtcaccctcactccagtctctctgcccagTTAAGTGGTTTGATATCATTGAG------AAGACACCTTTACTAGTAATGGAGTATGCCAGTGGTGgtgcatctcaagttgctcccagtgtttattggtgcttgcctatgtacaga #### Mgea5_ID9593_8 --> 2 - 1 Original Alignment ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAA-GACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCa cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagctGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAACGACATTG-CACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCagtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from CESAR ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCa cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagctGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAACGACATTGCACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCagtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Spaln_aa2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAACGACATTGCACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Spaln_nt2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAA-GACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAACGACATTG-CACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Pairagon CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAA-GACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAACGACATTGC-ACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Exonerate_protein2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAACGACATTGCACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Exonerate_coding2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAACGACATTGCACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from GeneWise CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAACGACATTGCACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc #### Mrpl16_ID3289_2 --> 2 - 1 Original Alignment atTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTC-CTCCCAGTTCCAACTTTTGAAa agggatctgagctcctataaacctcaggtggtttcgtctttcacacctagatGCT---GCAACCCTTCCCACCAGTGATGGCCTGAAAACTCTCCTTCCCTG-TCCAACATATGAAagtatgatgtaccctgatgattactacataactccaggtaggccacatata Alignment from CESAR atTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAa agggatctgagctcctataaacctcaggtggtttcgtctttcacacctagatGCT---GCAACCCTTCCCACCAGTGATGGCCTGAAAACTCTCCTTCCCTGTCCAACATATGAAagtatgatgtaccctgatgattactacataactccaggtaggccacatata Alignment from Spaln_aa2Genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctataaacctcaggtggtttcgtctttcacacctagATGCT---GCAACCCTTCCCACCAGTGATGGCCTGAAAACTCTCCTTCCCTGTCCAACATATGAAAgtatgatgtaccctgatgattactacataactccaggtaggccacatata Alignment from Spaln_nt2Genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctataaacctcaggtggtttcgtctttcacacctagATGCT---GCAACCCTTCCCACCAGTGATGGCCTGAAAACTCTCCTTCCCTGTCCAACATATGAAAgtatgatgtaccctgatgattactacataactccaggtaggccacatata Alignment from Pairagon ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctataaacctcaggtggtttcgtctttcacacctagATGCT---GCAACCCTTCCCACCAGTGATGGCCTGAAAACTCTCCTTCCCTGTCCAACATATGAAAgtatgatgtaccctgatgattactacataactccaggtaggccacatata Alignment from Exonerate_protein2genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctataaacctcaggtggtttcgtctttcacacctagATGCT---GCAACCCTTCCCACCAGTGATGGCCTGAAAACTCTCCTTCCCTGTCCAACATATGAAAgtatgatgtaccctgatgattactacataactccaggtaggccacatata Alignment from Exonerate_coding2genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctataaacctcaggtggtttcgtctttcacacctagATGCT---GCAACCCTTCCCACCAGTGATGGCCTGAAAACTCTCCTTCCCTGTCCAACATATGAAAgtatgatgtaccctgatgattactacataactccaggtaggccacatata Alignment from GeneWise ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctataaacctcaggtggtttcgtctttcacacctagATGCT---GCAACCCTTCCCACCAGTGATGGCCTGAAAACTCTCCTTCCCTGTCCAACATATGAAAgtatgatgtaccctgatgattactacataactccaggtaggccacatata #### Ms4a10_ID3085_2 --> 0 - 0 Original Alignment GGCTTTCACATCGCCATTGCTTTTGCACACTTG-GCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccagacacagctcagcatcagcaagctctactttcttctcaattctagGGATTTCACATTACCATTGCCTTTGCTCATTTACGCCT-TGGTGGGTACTTGATCTCCACAGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTTTGGGGAACTGTCTCAgttagtaagttcctatagcaaccagcgaagtgcactcaggatgtctacaa Alignment from CESAR GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccagacacagctcagcatcagcaagctctactttcttctcaattctagGGATTTCACATTACCATTGCCTTTGCTCATTTACGCCTTGGTGGGTACTTGATCTCCACAGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTTTGGGGAACTGTCTCAgttagtaagttcctatagcaaccagcgaagtgcactcaggatgtctacaa Alignment from Spaln_aa2Genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccagacacagctcagcatcagcaagctctactttcttctcaattctagGGATTTCACATTACCATTGCCTTTGCTCATTTACGCCTTGGTGGGTACTTGATCTCCACAGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTTTGGGGAACTGTCTCAgttagtaagttcctatagcaaccagcgaagtgcactcaggatgtctacaa Alignment from Spaln_nt2Genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccagacacagctcagcatcagcaagctctactttcttctcaattctagGGATTTCACATTACCATTGCCTTTGCTCATTTACGCCTTGGTGGGTACTTGATCTCCACAGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTTTGGGGAACTGTCTCAgttagtaagttcctatagcaaccagcgaagtgcactcaggatgtctacaa Alignment from Pairagon GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccagacacagctcagcatcagcaagctctactttcttctcaattctagGGATTTCACATTACCATTGCCTTTGCTCATTTACGCCTTGGTGGGTACTTGATCTCCACAGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTTTGGGGAACTGTCTCAgttagtaagttcctatagcaaccagcgaagtgcactcaggatgtctacaa Alignment from Exonerate_protein2genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccagacacagctcagcatcagcaagctctactttcttctcaattctagGGATTTCACATTACCATTGCCTTTGCTCATTTACGCCTTGGTGGGTACTTGATCTCCACAGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTTTGGGGAACTGTCTCAgttagtaagttcctatagcaaccagcgaagtgcactcaggatgtctacaa Alignment from Exonerate_coding2genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccagacacagctcagcatcagcaagctctactttcttctcaattctagGGATTTCACATTACCATTGCCTTTGCTCATTTACGCCTTGGTGGGTACTTGATCTCCACAGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTTTGGGGAACTGTCTCAgttagtaagttcctatagcaaccagcgaagtgcactcaggatgtctacaa Alignment from GeneWise GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccagacacagctcagcatcagcaagctctactttcttctcaattctagGGATTTCACATTACCATTGCCTTTGCTCATTTACGCCTTGGTGGGTACTTGATCTCCACAGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTTTGGGGAACTGTCTCAgttagtaagttcctatagcaaccagcgaagtgcactcaggatgtctacaa #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAACTCTTGGAAGCA-TCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagtGCACCTGACATTGAGCTCCTGGAAGCACTCACCTG-CAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from CESAR tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagtGCACCTGACATTGAGCTCCTGGAAGCACTCACCTGCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCACTCACCTGCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCACTCACCTGCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAAGCA-TCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCACTCACCTG-CAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCACTCACCTGCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCACTCACCTGCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCACTCACCTGCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTC-GCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcatccaatatgaagaatcgactttttttttttctatgtagtGCTGTGAGCACTTTTCGTACGAG-TCTAGATTGCAATTGCTCCATTTCTATTCAAAAGTCCAGCTTGCATATGAGTGCA------GCTACCACAGGTATTATCACCCTGgtaagtaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcgactttttttttttctatgtagtGCTGTGAGCACTTTTCGTACGAGTCTAGATTGCAATTGCTCCATTTCTATTCAAAAGTCCAGCTTGCATATGAGTGCAGCTACCACAGGT---ATTATCACCCTGgtaagtaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcgactttttttttttctatgtagTGCTGTGAGCACTTTTCGTACGAGTCTAGATTGCAATTGCTCCATTTCTATTCAAAAGTCCAGCTTGCATATGAGTGCAGCTACCACAGGTATT---ATCACCCTGgtaagtaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Spaln_nt2Genome AGCTGTGGGAACCTT-CGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcgactttttttttttctatgtagTGCTGTGAGCACTTTTCGTACGAG-TCTAGATTGCAATTGCTCCATTTCTATTCAAAAGTCCAGCTTGCATATGAGTGCA---GCTACCACAGGTATTATCACCCTGgtaagtaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGA----------TATCACTCTG gctaatgtggcatccaatatgaagaatcgactttttttttttctatgtagtgctgtgagcacttttcgtacgagtctagattgcaattgctccatttctattcaaaagtccag---------------------------------------------------------CTTGCATATGAGTGCAGCT-------------ACCACAGGTATTATCACCCTGgtaagtaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGAC------TGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcgactttttttttttctatgtagTGCTGTGAGCACTTTTCGTACGAGTCTAGATTGCAATTGCTCCATTTCTATTCAAAAGTCCAGCTTGCATATGAGTGCAGCTACCACAGGT---ATTATCACCCTGgtaagtaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGAC------TGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcgactttttttttttctatgtagTGCTGTGAGCACTTTTCGTACGAGTCTAGATTGCAATTGCTCCATTTCTATTCAAAAGTCCAGCTTGCATATGAGTGCAGCTACCACAGGT---ATTATCACCCTGgtaagtaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGC------AGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcgactttttttttttctatgtagTGCTGTGAGCACTTTTCGTACGAGTCTAGATTGCAATTGCTCCATTTCTATTCAAAAGTCCAGCTTGCATATGAGTGCAGCTACCACAGGTATT---ATCACCCTGgtaagtaccaagtcacaaatatttttgtatgataagccaagagtggagta #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTAT-TACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATCTACATGTGGA-AACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTAT-TACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATCTACATGTGGA-AACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATCTACATGTGGAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATCTACATGTGGAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Pairagon CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTAT-TACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATCTACATGTGG-AAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATCTACATGTGGAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATCTACATGTGGAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATCTACATGTGGAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gcaggatgacattttcaagccaggtcagagcccctttctttgtttggcaggtGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGCACCCAGAATC-AGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagctgaccagaataaaagcatactagtaattaccttacttttttaat Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gaaggatgacattttcaagccaggtcagagcccctttctttgtttggcaggtGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGCACCCAGAATCAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagctgaccagaataaaagcatactagtaattaccttacttttttaat Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gcaggatgacattttcaagccaggtcagagcccctttctttgtttggcagGTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGCACCCAGAATCAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagctgaccagaataaaagcatactagtaattaccttacttttttaat Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gcaggatgacattttcaagccaggtcagagcccctttctttgtttggcagGTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGCACCCAGAATCAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagctgaccagaataaaagcatactagtaattaccttacttttttaat Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gcaggatgacattttcaagccaggtcagagcccctttctttgtttggcagGTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGCACCCAGAATC-AGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagctgaccagaataaaagcatactagtaattaccttacttttttaat Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gcaggatgacattttcaagccaggtcagagcccctttctttgtttggcagGTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGCACCCAGAATCAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagctgaccagaataaaagcatactagtaattaccttacttttttaat Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gcaggatgacattttcaagccaggtcagagcccctttctttgtttggcagGTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGCACCCAGAATCAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagctgaccagaataaaagcatactagtaattaccttacttttttaat Alignment from GeneWise -------------------------------------------------GTGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT GCAGGATGACATTTTCAAGCCAGGTCAGAGCCCCTTTCTTTGTTTGGCAGGTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGCACCCAGAATCAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagctgaccagaataaaagcatactagtaattaccttacttttttaat #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCT-TCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag taaattaccgaccacatccagggatggctgttctggtttgactttgtcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGGAGGCCCCTGGCTCTCAGGGATTC-TTCAAGTTCCCAGCCAGCAGCCAAGCGTCAGAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGACGCCaggtaatgaatgagcgaaccaagagaggctggtaacctcactgtatgtagaa Alignment from CESAR ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag taaattaccgaccacatccagggatggctgttctggtttgactttgtcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGGAGGCCCCTGGCTCTCAGGGATTCTTCAAGTTCCCAGCCAGCAGCCAAGCGTCAGAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGACGCCaggtaatgaatgagcgaaccaagagaggctggtaacctcactgtatgtagaa Alignment from Spaln_aa2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattaccgaccacatccagggatggctgttctggtttgactttgtcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGGAGGCCCCTGGCTCTCAGGGATTCTTCAAGTTCCCAGCCAGCAGCCAAGCGTCAGAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGACGCCAGgtaatgaatgagcgaaccaagagaggctggtaacctcactgtatgtagaa Alignment from Spaln_nt2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattaccgaccacatccagggatggctgttctggtttgactttgtcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGGAGGCCCCTGGCTCTCAGGGATTCTTCAAGTTCCCAGCCAGCAGCCAAGCGTCAGAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGACGCCAGgtaatgaatgagcgaaccaagagaggctggtaacctcactgtatgtagaa Alignment from Pairagon ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCT-TCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattaccgaccacatccagggatggctgttctggtttgactttgtcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGGAGGCCCCTGGCTCTCAGGGATTC-TTCAAGTTCCCAGCCAGCAGCCAAGCGTCAGAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGACGCCAGgtaatgaatgagcgaaccaagagaggctggtaacctcactgtatgtagaa Alignment from Exonerate_protein2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattaccgaccacatccagggatggctgttctggtttgactttgtcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGGAGGCCCCTGGCTCTCAGGGATTCTTCAAGTTCCCAGCCAGCAGCCAAGCGTCAGAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGACGCCAGgtaatgaatgagcgaaccaagagaggctggtaacctcactgtatgtagaa Alignment from Exonerate_coding2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattaccgaccacatccagggatggctgttctggtttgactttgtcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGGAGGCCCCTGGCTCTCAGGGATTCTTCAAGTTCCCAGCCAGCAGCCAAGCGTCAGAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGACGCCAGgtaatgaatgagcgaaccaagagaggctggtaacctcactgtatgtagaa Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattaccgaccacatccagggatggctgttctggtttgactttgtcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGGAGGCCCCTGGCTCTCAGGGATTCTTCAAGTTCCCAGCCAGCAGCCAAGCGTCAGAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGACGCCAGgtaatgaatgagcgaaccaagagaggctggtaacctcactgtatgtagaa #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCC-TGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag atgggcatcttgagtctatatagtgcaatgtaaatactgtctaattctagTCATCATCTGCAGTCCCAGACCAAGCCCTGCATCAGTC-GCATTTTCTACAGGGGACAATCATAGCTCTTGTAGTAGTGATGGCCTTCaggtaagccgctttaccaagctgagtccctaaaagtgccatacaattgtgta Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAG---CGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag atgggcatcttgagtctatatagtgcaatgtaaatactgtctaattctagTCATCATCTGCAGTCCCAGACCAAGCC---CTGCATCAGTCGCATTTTCTACAGGGGACAATCATAGCTCTTGTAGTAGTGATGGCCTTCaggtaagccgctttaccaagctgagtccctaaaagtgccatacaattgtgta Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgagtctatatagtgcaatgtaaatactgtctaattctagTCATCATCTGCAGTCCCAGACCAAGCCCTGCATCAGTCGCATTTTCTACAGGGGACAATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtaagccgctttaccaagctgagtccctaaaagtgccatacaattgtgta Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgagtctatatagtgcaatgtaaatactgtctaattctagTCATCATCTGCAGTCCCAGACCAAGCCCTGCATCAGTCGCATTTTCTACAGGGGACAATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtaagccgctttaccaagctgagtccctaaaagtgccatacaattgtgta Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGG-CCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgagtctatatagtgcaatgtaaatactgtctaattctagTCATCATCTGCAGTCCCAGACCAAGCCCTGCATCAGTC-GCATTTTCTACAGGGGACAATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtaagccgctttaccaagctgagtccctaaaagtgccatacaattgtgta Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgagtctatatagtgcaatgtaaatactgtctaattctagTCATCATCTGCAGTCCCAGACCAAGCCCTGCATCAGTCGCATTTTCTACAGGGGACAATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtaagccgctttaccaagctgagtccctaaaagtgccatacaattgtgta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgagtctatatagtgcaatgtaaatactgtctaattctagTCATCATCTGCAGTCCCAGACCAAGCCCTGCATCAGTCGCATTTTCTACAGGGGACAATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtaagccgctttaccaagctgagtccctaaaagtgccatacaattgtgta #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGCCGGGCAGGC-AGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG aaggatcagcaggtgagttatgcatttttttttctcctttcttcttttagcCATGCTGGTAGTGAATTTAGTAGGGCAGGCCAGTGTCCCTC-CAAAAAGAGGCCCCCCAGGCTTGCCAATAAGgtaagtcagtccagtagcgtgggctcctacccacccgtgttctatagctg Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG aaggatcagcaggtgagttatgcatttttttttctcctttcttcttttagcCATGCTGGTAGTGAATTTAGTAGGGCAGGCCAGTGTCCCTCCAAAAAGAGGCCCCCCAGGCTTGCCAATAAGgtaagtcagtccagtagcgtgggctcctacccacccgtgttctatagctg Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG aaggatcagcaggtgagttatgcatttttttttctcctttcttcttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCCAGTGTCCCTCCAAAAAGAGGCCCCCCAGGCTTGCCAATAAGgtaagtcagtccagtagcgtgggctcctacccacccgtgttctatagctg Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGC-AGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG aaggatcagcaggtgagttatgcatttttttttctcctttcttcttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCCAGTGTCCCTC-CAAAAAGAGGCCCCCCAGGCTTGCCAATAAGgtaagtcagtccagtagcgtgggctcctacccacccgtgttctatagctg Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGG-CAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG aaggatcagcaggtgagttatgcatttttttttctcctttcttcttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCCAGTGTCCCTC-CAAAAAGAGGCCCCCCAGGCTTGCCAATAAGgtaagtcagtccagtagcgtgggctcctacccacccgtgttctatagctg Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG aaggatcagcaggtgagttatgcatttttttttctcctttcttcttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCCAGTGTCCCTCCAAAAAGAGGCCCCCCAGGCTTGCCAATAAGgtaagtcagtccagtagcgtgggctcctacccacccgtgttctatagctg Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG aaggatcagcaggtgagttatgcatttttttttctcctttcttcttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCCAGTGTCCCTCCAAAAAGAGGCCCCCCAGGCTTGCCAATAAGgtaagtcagtccagtagcgtgggctcctacccacccgtgttctatagctg Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG aaggatcagcaggtgagttatgcatttttttttctcctttcttcttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCCAGTGTCCCTCCAAAAAGAGGCCCCCCAGGCTTGCCAATAAGgtaagtcagtccagtagcgtgggctcctacccacccgtgttctatagctg #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCT-GAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcaggtATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTCGAAGCTGTGG-GGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcaggtATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTCGAAGCTGTGGGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTCGAAGCTGTGGGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTCGAAGCTGTGGGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCT-GAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTCGAAGCTGTG-GGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTCGAAGCTGTGGGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTCGAAGCTGTGGGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg cctaaggtcactgtgcctatagactaattcctgacccactccttccgcagGTTGATACCACCGAACACCTAAAGCAGGATCT-ACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgagtatgtgtgtaagggttcctaactatgcctggcttttccttgctat Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg cctaaggtcactgtgcctatagactaattcctgacccactccttccgcagGTTGATACCACCGAACACCTAAAGCAGGATCTACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgagtatgtgtgtaagggttcctaactatgcctggcttttccttgctat Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctaaggtcactgtgcctatagactaattcctgacccactccttccgcagGTTGATACCACCGAACACCTAAAGCAGGATCTACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtatgtgtgtaagggttcctaactatgcctggcttttccttgctat Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctaaggtcactgtgcctatagactaattcctgacccactccttccgcagGTTGATACCACCGAACACCTAAAGCAGGATCT-ACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtatgtgtgtaagggttcctaactatgcctggcttttccttgctat Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctaaggtcactgtgcctatagactaattcctgacccactccttccgcagGTTGATACCACCGAACACCTAAAGCAGGATCTA-CGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtatgtgtgtaagggttcctaactatgcctggcttttccttgctat Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctaaggtcactgtgcctatagactaattcctgacccactccttccgcagGTTGATACCACCGAACACCTAAAGCAGGATCTACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtatgtgtgtaagggttcctaactatgcctggcttttccttgctat Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctaaggtcactgtgcctatagactaattcctgacccactccttccgcagGTTGATACCACCGAACACCTAAAGCAGGATCTACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtatgtgtgtaagggttcctaactatgcctggcttttccttgctat Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG cctaaggtcactgtgcctatagactaattcctgacccactccttccgcagGTTGATACCACCGAACACCTAAAGCAGGATCTACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtatgtgtgtaagggttcctaactatgcctggcttttccttgctat #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACag ttacatctctccatggtgtccaggtacttcccttgtgctcactgactcagcTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCCAGATTC-CCAGCTAATGGCCAATaggtaagcagcatcttggaagaattgacttgctggaggttggacctgagaat Alignment from CESAR cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag ttacatctctccatggtgtccaggtacttcccttgtgctcactgactcagcTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCCAGATTCCCAGCTAATGGCCAATaggtaagcagcatcttggaagaattgacttgctggaggttggacctgagaat Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG ttacatctctccatggtgtccaggtacttcccttgtgctcactgactcagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCCAGATTCCCAGCTAATGGCCAATAGgtaagcagcatcttggaagaattgacttgctggaggttggacctgagaat Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTC-AGATCCTGCAGCTCATGGCCAACAG ttacatctctccatggtgtccaggtacttcccttgtgctcactgactcagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCCAGATTC-CCAGCTAATGGCCAATAGgtaagcagcatcttggaagaattgacttgctggaggttggacctgagaat Alignment from Pairagon CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACAG ttacatctctccatggtgtccaggtacttcccttgtgctcactgactcagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCCAGATTCC-CAGCTAATGGCCAATAGgtaagcagcatcttggaagaattgacttgctggaggttggacctgagaat Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG ttacatctctccatggtgtccaggtacttcccttgtgctcactgactcagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCCAGATTCCCAGCTAATGGCCAATAGgtaagcagcatcttggaagaattgacttgctggaggttggacctgagaat Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAAC ttacatctctccatggtgtccaggtacttcccttgtgctcactgactcagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCCAGATTCCCAGCTAATGGCCAATaggtaagcagcatcttggaagaattgacttgctggaggttggacctgagaat Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG ttacatctctccatggtgtccaggtacttcccttgtgctcactgactcagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCCAGATTCCCAGCTAATGGCCAATAGgtaagcagcatcttggaagaattgacttgctggaggttggacctgagaat #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCC-TTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcaggTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCCTTCT-TCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATtggtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcaggTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCCTTCTTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATtggtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCCTTCTTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCCTTCTTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCCTTCTTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCCTTCTTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCCTTCTTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCCTTCTTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCA-GCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg acactgttaaagtttctattctcctgcatttgctttttgtttttacttagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCACGCCAAGACCT-TGAATATCGGGTGTTGCTTGCGTTCCCTAATGCA---GAGGCTAACAGTGTGGAAGTTggtaagcgtcagaagtctccaggcaggatgcaacttcccctgtctctcccc Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg acactgttaaagtttctattctcctgcatttgctttttgtttttacttagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCACGCCAAGACCTTGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTggtaagcgtcagaagtctccaggcaggatgccttctacgttctgtccattg Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCACGCCAAGACCTTGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgcaacttcccctgtctctcccc Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCA-GCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCACGCCAAGACCT-TGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAG---AGGCTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgcaacttcccctgtctctcccc Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCA-GCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCACGCCAAGACCT-TGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAG---AGGCTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgcaacttcccctgtctctcccc Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCACGCCAAGACCTTGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgcaacttcccctgtctctcccc Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCACGCCAAGACCTTGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgcaacttcccctgtctctcccc Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCACGCCAAGACCTTGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAGGCT---AACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgcaacttcccctgtctctcccc #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCC-CCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattggagctaatcacaaagcctgtcctcatagtccctctctccccacagtAACCTCACAGGAACTTCTGCCCCCTACTTTCT-GCAGAGAGCTCTAGGCTGTGAATACAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtaggtttaggacgcatgaagctaagtgcccttgagtgggcccccagaat Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattggagctaatcacaaagcctgtcctcatagtccctctctccccacagtAACCTCACAGGAACTTCTGCCCCCTACTTTCTGCAGAGAGCTCTAGGCTGTGAATACAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtaggtttaggacgcatgaagctaagtgcccttgagtgggcccccagaat Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaagcctgtcctcatagtccctctctccccacagTAACCTCACAGGAACTTCTGCCCCCTACTTTCTGCAGAGAGCTCTAGGCTGTGAATACAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtaggtttaggacgcatgaagctaagtgcccttgagtgggcccccagaat Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaagcctgtcctcatagtccctctctccccacagTAACCTCACAGGAACTTCTGCCCCCTACTTTCTGCAGAGAGCTCTAGGCTGTGAATACAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtaggtttaggacgcatgaagctaagtgcccttgagtgggcccccagaat Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaagcctgtcctcatagtccctctctccccacagTAACCTCACAGGAACTTCTGCCCCCTACTTTCTGCAGAGAGCTCTAGGCTGTGAATACAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtaggtttaggacgcatgaagctaagtgcccttgagtgggcccccagaat Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaagcctgtcctcatagtccctctctccccacagTAACCTCACAGGAACTTCTGCCCCCTACTTTCTGCAGAGAGCTCTAGGCTGTGAATACAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtaggtttaggacgcatgaagctaagtgcccttgagtgggcccccagaat Alignment from Exonerate_coding2genome CCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGTGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGA AATTGGAGCTAATCACAAAGCCTGTCCTCATAGTCCCTCTCTCCCCACAGTAACCTCACAGGAACTTCTGCCCCCTACTTTCTGCAGAGAGCTCTAGGCTGTGAATACAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATggaaggtaggtttaggacgcatgaagctaagtgcccttgagtgggcccccagaat Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaagcctgtcctcatagtccctctctccccacagTAACCTCACAGGAACTTCTGCCCCCTACTTTCTGCAGAGAGCTCTAGGCTGTGAATACAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtaggtttaggacgcatgaagctaagtgcccttgagtgggcccccagaat #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAAC-TGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATCTGGATAC-ATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAaggtgagttcagattaagatccagagagactctttttacattcccttcccta Alignment from CESAR ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATCTGGATACATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAaggtgagttcagattaagatccagagagactctttttacactgtctcttccc Alignment from Spaln_aa2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATCTGGATACATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacattcccttcccta Alignment from Spaln_nt2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAA-CTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATCTGGATAC-ATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacattcccttcccta Alignment from Pairagon ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAA-CTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATCTGGATAC-ATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacattcccttcccta Alignment from Exonerate_protein2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATCTGGATACATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacattcccttcccta Alignment from Exonerate_coding2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATCTGGATACATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacattcccttcccta Alignment from GeneWise ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATCTGGATACATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacattcccttcccta #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAG-GCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatgtggcctctcctcacgcttgtgtttccctaggtTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGCGCAG-TCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGggtatgacccaacatcttgaggcagtgctgtctctctgttggtgtacagga Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatgtggcctctcctcacgcttgtgtttccctaggtTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGCGCAGTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGggtatgacccaacatcttgaggcagtgaaactttcctcatctttttcagga Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtggcctctcctcacgcttgtgtttccctagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGCGCAGTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtatgacccaacatcttgaggcagtgctgtctctctgttggtgtacagGA Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtggcctctcctcacgcttgtgtttccctagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGCGCAGTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtatgacccaacatcttgaggcagtgctgtctctctgttggtgtacagGA Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtggcctctcctcacgcttgtgtttccctagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGCGCAGTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtatgacccaacatcttgaggcagtgctgtctctctgttggtgtacagGA Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtggcctctcctcacgcttgtgtttccctagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGCGCAGTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtatgacccaacatcttgaggcagtgctgtctctctgttggtgtacagGA Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtggcctctcctcacgcttgtgtttccctagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGCGCAGTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtatgacccaacatcttgaggcagtgctgtctctctgttggtgtacagGA Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG------------------------------------------------GGG atgaaggtgaaacttggatgtggcctctcctcacgcttgtgtttccctagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGCGCAGTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGGTATGACCCAACATCTTGAGGCAGTGCTGTCTCTCTGTTGGTGTACAGGA #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAGCTG-ATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag acctgagctaggtgccggctgtcagtgaattaactctttctgccccacagtCCTCTGCAGGTTCAGATGGTTAACGATCAACTACATGCTCTTAG-GTGTGCATTTTTGAACCCTAGGGCGTTCCCGGAGGAGAGGCATTACaggtaagaccgtgtaaattgagttgcttagtcccaggcttagaactagagtt Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag acctgagctaggtgccggctgtcagtgaattaactctttctgccccacagtCCTCTGCAGGTTCAGATGGTTAACGATCAACTACATGCTCTTAGGTGTGCATTTTTGAACCCTAGGGCGTTCCCGGAGGAGAGGCATTACaggtaagaccgtgtaaattgagttgcttagtcccaggcttagaactagagtt Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgccggctgtcagtgaattaactctttctgccccacagTCCTCTGCAGGTTCAGATGGTTAACGATCAACTACATGCTCTTAGGTGTGCATTTTTGAACCCTAGGGCGTTCCCGGAGGAGAGGCATTACAGgtaagaccgtgtaaattgagttgcttagtcccaggcttagaactagagtt Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTG-ATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgccggctgtcagtgaattaactctttctgccccacagTCCTCTGCAGGTTCAGATGGTTAACGATCAACTACATGCTCTTAG-GTGTGCATTTTTGAACCCTAGGGCGTTCCCGGAGGAGAGGCATTACAGgtaagaccgtgtaaattgagttgcttagtcccaggcttagaactagagtt Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTG-ATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgccggctgtcagtgaattaactctttctgccccacagTCCTCTGCAGGTTCAGATGGTTAACGATCAACTACATGCTCTTAG-GTGTGCATTTTTGAACCCTAGGGCGTTCCCGGAGGAGAGGCATTACAGgtaagaccgtgtaaattgagttgcttagtcccaggcttagaactagagtt Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgccggctgtcagtgaattaactctttctgccccacagTCCTCTGCAGGTTCAGATGGTTAACGATCAACTACATGCTCTTAGGTGTGCATTTTTGAACCCTAGGGCGTTCCCGGAGGAGAGGCATTACAGgtaagaccgtgtaaattgagttgcttagtcccaggcttagaactagagtt Alignment from Exonerate_coding2genome acctgagctaggtgccggctgtcagtgaattaactctttctgccccacagtcctctgcaggttcagatggttaacgatcaactacatgctcttaggtgtgcatttttgaaccctagggcgttcccggaggagaggcattacaggtaagaccgtgtaaattgagttgcttagtcccaggcttagaactagagtt Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgccggctgtcagtgaattaactctttctgccccacagTCCTCTGCAGGTTCAGATGGTTAACGATCAACTACATGCTCTTAGGTGTGCATTTTTGAACCCTAGGGCGTTCCCGGAGGAGAGGCATTACAGgtaagaccgtgtaaattgagttgcttagtcccaggcttagaactagagtt #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGG-ATT---CTGATGTGGACAGAACTCATCCGAg gtaactaaatctcctttttgccgttaaatttaacttgtatctttggtcagagTACGTAAACAAAAAAGAGCAAGAGGCGGAAGTAGACATGAAGGCAGGT---GACAATGCTGCACAGCATTCTGA-GATGTGGACAGAAATAATCCGGggtaagatccaatgcaggatcataaggtgaaaatttaagcactagtgtggt Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGG---ATTCTGATGTGGACAGAACTCATCCGAg gtaactaaatctcctttttgccgttaaatttaacttgtatctttggtcagagTACGTAAACAAAAAAGAGCAAGAGGCGGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGCATTCTGAGATGTGGACAGAAATAATCCGGggtaagatccaatgcaggatcataaggtgaaaatttaagcactagtgtggt Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG gtaactaaatctcctttttgccgttaaatttaacttgtatctttggtcagAGTACGTAAACAAAAAAGAGCAAGAGGCGGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGCATTCTGAGATGTGGACAGAAATAATCCGGGgtaagatccaatgcaggatcataaggtgaaaatttaagcactagtgtggt Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGG-ATTCTGA--TGTGGACAGAACTCATCCGAG gtaactaaatctcctttttgccgttaaatttaacttgtatctttggtcagAGTACGTAAACAAAAAAGAGCAAGAGGCGGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGCATTCTGAGATGTGGACAGAAATAATCCGGGgtaagatccaatgcaggatcataaggtgaaaatttaagcactagtgtggt Alignment from Pairagon AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGG-ATTCT--GATGTGGACAGAACTCATCCGAG gtaactaaatctcctttttgccgttaaatttaacttgtatctttggtcagAGTACGTAAACAAAAAAGAGCAAGAGGCGGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGCATTCTGAGATGTGGACAGAAATAATCCGGGgtaagatccaatgcaggatcataaggtgaaaatttaagcactagtgtggt Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG gtaactaaatctcctttttgccgttaaatttaacttgtatctttggtcagAGTACGTAAACAAAAAAGAGCAAGAGGCGGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGCATTCTGAGATGTGGACAGAAATAATCCGGGgtaagatccaatgcaggatcataaggtgaaaatttaagcactagtgtggt Alignment from Exonerate_coding2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG gtaactaaatctcctttttgccgttaaatttaacttgtatctttggtcagAGTACGTAAACAAAAAAGAGCAAGAGGCGGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGCATTCTGAGATGTGGACAGAAATAATCCGGGgtaagatccaatgcaggatcataaggtgaaaatttaagcactagtgtggt Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG gtaactaaatctcctttttgccgttaaatttaacttgtatctttggtcagAGTACGTAAACAAAAAAGAGCAAGAGGCGGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGCATTCTGAGATGTGGACAGAAATAATCCGGGgtaagatccaatgcaggatcataaggtgaaaatttaagcactagtgtggt #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCC-CCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacggtgcttgatcatgactcagttaatttcttttttttcccccataaaggaGTGTTTGGCTGTCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCCA-AATCTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtaagacttaagccaattcaaggtcaaggcatcagaggggtgcttgcaaa Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacggtgcttgatcatgactcagttaatttcttttttttcccccataaaggaGTGTTTGGCTGTCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCCAAATCTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtaagacttaagccaattcaaggtcaaggcatcagaggggtgcttgcaaa Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgcttgatcatgactcagttaatttcttttttttcccccataaagGAGTGTTTGGCTGTCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCCAAATCTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaagacttaagccaattcaaggtcaaggcatcagaggggtgcttgcaaa Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgcttgatcatgactcagttaatttcttttttttcccccataaagGAGTGTTTGGCTGTCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCCAAATCTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaagacttaagccaattcaaggtcaaggcatcagaggggtgcttgcaaa Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgcttgatcatgactcagttaatttcttttttttcccccataaagGAGTGTTTGGCTGTCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCCAAATCTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaagacttaagccaattcaaggtcaaggcatcagaggggtgcttgcaaa Alignment from Exonerate_protein2genome GTGGGAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgcttgatcatgactcagttaatttcttttttttcccccatAAAGGAGTGTTTGGCTGTCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCCAAATCTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaagacttaagccaattcaaggtcaaggcatcagaggggtgcttgcaaa Alignment from Exonerate_coding2genome GTGGGAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgcttgatcatgactcagttaatttcttttttttcccccatAAAGGAGTGTTTGGCTGTCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCCAAATCTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaagacttaagccaattcaaggtcaaggcatcagaggggtgcttgcaaa Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacggtgcttgatcatgactcagttaatttcttttttttcccccataaagGAGTGTTTGGCTGTCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCCAAATCTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAACACAATTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaagacttaagccaattcaaggtcaaggcatcagaggggtgcttgcaaa #### Nfkb2_ID9824_2 --> 0 - 1 Original Alignment GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCC-TCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCACACAATAG-AGAACCTAATGATCCAGCCCCTGAAACAggtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from CESAR GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCACACAATAGAGAACCTAATGATCCAGCCCCTGAAACAggtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Spaln_aa2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCACACAATAGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Spaln_nt2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCACACAATAGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Pairagon GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCACACAATAGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Exonerate_protein2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCACACAATAGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Exonerate_coding2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCACACAATAGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from GeneWise GACAATTGCTACGATCCAGGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG taataccactaccctgcccccatctttcttaa---------------CAGGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCACACAATAGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga #### Nfkb2_ID9825_3 --> 2 - 0 Original Alignment ctGATGGCCCCTATCTGGTGATT-GTGGAACAGCCCAAACAG ctgctagtaggactaataaagaggggaatttcttcctctttgtgctgcagctGATGGCCCCTATCTTGTGATTCGTGG-ACAGACCAAACAGgtaggtgtacaataaaacaataaaaaaatgtgtgctttagggttaggtag Alignment from CESAR ctGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaggactaataaagaggggaatttcttcctctttgtgctgcagctGATGGCCCCTATCTTGTGATTCGTGGACAGACCAAACAGgtaggtgtacaataaaacaataaaaaaatgtgtgctttagggttaggtag Alignment from Spaln_aa2Genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaggactaataaagaggggaatttcttcctctttgtgctgcagCTGATGGCCCCTATCTTGTGATTCGTGGACAGACCAAACAGgtaggtgtacaataaaacaataaaaaaatgtgtgctttagggttaggtag Alignment from Spaln_nt2Genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaggactaataaagaggggaatttcttcctctttgtgctgcagCTGATGGCCCCTATCTTGTGATTCGTGGACAGACCAAACAGgtaggtgtacaataaaacaataaaaaaatgtgtgctttagggttaggtag Alignment from Pairagon CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaggactaataaagaggggaatttcttcctctttgtgctgcagCTGATGGCCCCTATCTTGTGATTCGTGGACAGACCAAACAGgtaggtgtacaataaaacaataaaaaaatgtgtgctttagggttaggtag Alignment from Exonerate_protein2genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaggactaataaagaggggaatttcttcctctttgtgctgcagCTGATGGCCCCTATCTTGTGATTCGTGGACAGACCAAACAGgtaggtgtacaataaaacaataaaaaaatgtgtgctttagggttaggtag Alignment from Exonerate_coding2genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaggactaataaagaggggaatttcttcctctttgtgctgcagCTGATGGCCCCTATCTTGTGATTCGTGGACAGACCAAACAGgtaggtgtacaataaaacaataaaaaaatgtgtgctttagggttaggtag Alignment from GeneWise CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG ctgctagtaggactaataaagaggggaatttcttcctctttgtgctgcagCTGATGGCCCCTATCTTGTGATTCGTGGACAGACCAAACAGgtaggtgtacaataaaacaataaaaaaatgtgtgctttagggttaggtag #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGT-GAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctccttctcattgctggcctgtttcctccttccaccagAGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCT-CCATGGTGGCTTGCCAGGTGCTTCCAGTGAGAAGGGCCGGAAGACCTATCCCACTGTAAAAgtaaggacaggtgccacagctgcttcatgcgtagacctggggcacacaac Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctccttctcattgctggcctgtttcctccttccaccagAGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCATGGTGGCTTGCCAGGTGCTTCCAGTGAGAAGGGCCGGAAGACCTATCCCACTGTAAAAgtaaggacaggtgccacagctgcttcatgcgtagacctggggcacacaac Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctccttctcattgctggcctgtttcctccttccaccagAGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCATGGTGGCTTGCCAGGTGCTTCCAGTGAGAAGGGCCGGAAGACCTATCCCACTGTAAAAgtaaggacaggtgccacagctgcttcatgcgtagacctggggcacacaac Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctccttctcattgctggcctgtttcctccttccaccagAGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCATGGTGGCTTGCCAGGTGCTTCCAGTGAGAAGGGCCGGAAGACCTATCCCACTGTAAAAgtaaggacaggtgccacagctgcttcatgcgtagacctggggcacacaac Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctccttctcattgctggcctgtttcctccttccaccagAGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCATGGTGGCTTGCCAGGTGCTTCCAGTGAGAAGGGCCGGAAGACCTATCCCACTGTAAAAgtaaggacaggtgccacagctgcttcatgcgtagacctggggcacacaac Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctccttctcattgctggcctgtttcctccttccaccagAGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCATGGTGGCTTGCCAGGTGCTTCCAGTGAGAAGGGCCGGAAGACCTATCCCACTGTAAAAgtaaggacaggtgccacagctgcttcatgcgtagacctggggcacacaac Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctccttctcattgctggcctgtttcctccttccaccagAGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCATGGTGGCTTGCCAGGTGCTTCCAGTGAGAAGGGCCGGAAGACCTATCCCACTGTAAAAgtaaggacaggtgccacagctgcttcatgcgtagacctggggcacacaac Alignment from GeneWise CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctccttctcattgctggcctgtttcctccttccaccagAGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCATGGTGGCTTGCCAGGTGCTTCCAGTGAGAAGGGCCGGAAGACCTATCCCACTGTAAAAgtaaggacaggtgccacagctgcttcatgcgtagacctggggcacacaac #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAG-TGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca tagacctggggcacacaacaatatagaacctttgtcctattcttttatagATATGTAACTATGAGGGACCCACCAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGCTGTTCAGAAC-CGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtaagcgacgcttttctgtcttggagttaatccaatggatatccggatat Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca tagacctggggcacacaacaatatagaacctttgtcctattcttttatagATATGTAACTATGAGGGACCCACCAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGCTGTTCAGAACCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtaagcgacgcttttctgtcttggagttaatccaatggatatccggatat Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA tagacctggggcacacaacaatatagaacctttgtcctattcttttatagATATGTAACTATGAGGGACCCACCAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGCTGTTCAGAACCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagcgacgcttttctgtcttggagttaatccaatggatatccggatat Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA tagacctggggcacacaacaatatagaacctttgtcctattcttttatagATATGTAACTATGAGGGACCCACCAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGCTGTTCAGAACCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagcgacgcttttctgtcttggagttaatccaatggatatccggatat Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAG-TGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA tagacctggggcacacaacaatatagaacctttgtcctattcttttatagATATGTAACTATGAGGGACCCACCAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGCTGTTCAGAACCGGG-GTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagcgacgcttttctgtcttggagttaatccaatggatatccggatat Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA tagacctggggcacacaacaatatagaacctttgtcctattcttttatagATATGTAACTATGAGGGACCCACCAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGCTGTTCAGAACCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagcgacgcttttctgtcttggagttaatccaatggatatccggatat Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA tagacctggggcacacaacaatatagaacctttgtcctattcttttatagATATGTAACTATGAGGGACCCACCAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGCTGTTCAGAACCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagcgacgcttttctgtcttggagttaatccaatggatatccggatat Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA tagacctggggcacacaacaatatagaacctttgtcctattcttttatagATATGTAACTATGAGGGACCCACCAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGCTGTTCAGAACCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagcgacgcttttctgtcttggagttaatccaatggatatccggatat #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGC-TCCAAGCCTCAGGGCCTTACAg ggggtgccccagcataaatcatccagaagttcgcggcattcctgttttagaTTCAATAATTTGGGC------CATGTAACAAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAACTCCAAAC-ACAGGGCCTAGCTggtaaaaaactggaaggtgtcttgggtggtgctcataaataggctgtgaaa Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg ggggtgccccagcataaatcatccagaagttcgcggcattcctgttttagaTTCAATAATTTGGGC------CATGTAACAAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAACTCCAAACACAGGGCCTAGCTggtaaaaaactggaaggtgtcttgggtggtgctcataaataggctgtgaaa Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG ggggtgccccagcataaatcatccagaagttcgcggcattcctgttttagATTCAATAATTTGGGC------CATGTAACAAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAACTCCAAACACAGGGCCTAGCTGgtaaaaaactggaaggtgtcttgggtggtgctcataaataggctgtgaaa Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCG-CTCCAAGCCTCAGGGCCTTACAG ggggtgccccagcataaatcatccagaagttcgcggcattcctgttttagATTCAATAATTTGGG------CCATGTAACAAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAACTCCAA-ACACAGGGCCTAGCTGgtaaaaaactggaaggtgtcttgggtggtgctcataaataggctgtgaaa Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCT------------------------------------------------------- ggggtgccccagcataaatcatccagaagttcgcggcattcctgttttagATTCAATAATTTGGGC------CATGTAACAAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAACTCCAAACACAGGGCCTAGCTGGTAAAAAACTGGAAGGTGTCTTGGGTGGTGCTCATAAATAGGCTGTGAAA Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG ggggtgccccagcataaatcatccagaagttcgcggcattcctgttttagATTCAATAATTTGGGC------CATGTAACAAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAACTCCAAACACAGGGCCTAGCTGgtaaaaaactggaaggtgtcttgggtggtgctcataaataggctgtgaaa Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG ggggtgccccagcataaatcatccagaagttcgcggcattcctgttttagATTCAATAATTTGGGC------CATGTAACAAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAACTCCAAACACAGGGCCTAGCTGgtaaaaaactggaaggtgtcttgggtggtgctcataaataggctgtgaaa Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG ggggtgccccagcataaatcatccagaagttcgcggcattcctgttttagATTCAATAATTTGGGC------CATGTAACAAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAACTCCAAACACAGGGCCTAGCTGgtaaaaaactggaaggtgtcttgggtggtgctcataaataggctgtgaaa #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTA-GAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa ggcaatttattgcttgcactacccatatctttttcttttcctctcctcagagGCTGAGCGCCGAGAGCTTCGAACAGG-GGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGATAGCagtgagtctgcgcaaacataagtgataagagttcaggtaagagatctgatt Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa ggcaatttattgcttgcactacccatatctttttcttttcctctcctcagagGCTGAGCGCCGAGAGCTTCGAACAGGGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGATAGCagtgagtctgcgcaaacataagtgataagagttcaggtaagagatctgatt Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcactacccatatctttttcttttcctctcctcagAGGCTGAGCGCCGAGAGCTTCGAACAGGGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGATAGCAgtgagtctgcgcaaacataagtgataagagttcaggtaagagatctgatt Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcactacccatatctttttcttttcctctcctcagAGGCTGAGCGCCGAGAGCTTCGAACAGGGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGATAGCAgtgagtctgcgcaaacataagtgataagagttcaggtaagagatctgatt Alignment from Pairagon AGGCTGAGCGGCGGGAGC-TAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcactacccatatctttttcttttcctctcctcagAGGCTGAGCGCCGAGAGCTTCGAACAGG-GGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGATAGCAgtgagtctgcgcaaacataagtgataagagttcaggtaagagatctgatt Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcactacccatatctttttcttttcctctcctcagAGGCTGAGCGCCGAGAGCTTCGAACAGGGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGATAGCAgtgagtctgcgcaaacataagtgataagagttcaggtaagagatctgatt Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcactacccatatctttttcttttcctctcctcagAGGCTGAGCGCCGAGAGCTTCGAACAGGGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGATAGCAgtgagtctgcgcaaacataagtgataagagttcaggtaagagatctgatt Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcactacccatatctttttcttttcctctcctcagAGGCTGAGCGCCGAGAGCTTCGAACAGGGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGATAGCAgtgagtctgcgcaaacataagtgataagagttcaggtaagagatctgatt #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAAC-CTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg atattgtcacctgtaagtcaatcgagttcaaattctttctcttcctttagaaTCTTCAGGGGCCTTGAATCTTGAAGA-CTCTGAGATGGATAAGGCAGCTGGTTCAGTGCATGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAGAGGggtgcctgcctgtctgggcaggctctattttggcaggctgtaatggtgaaa Alignment from CESAR agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg atattgtcacctgtaagtcaatcgagttcaaattctttctcttcctttagaaTCTTCAGGGGCCTTGAATCTTGAAGACTCTGAGATGGATAAGGCAGCTGGTTCAGTGCATGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAGAGGggtgcctgcctgtctgggcaggctctattttggcaggctgtaatggtgaaa Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG atattgtcacctgtaagtcaatcgagttcaaattctttctcttcctttagAATCTTCAGGGGCCTTGAATCTTGAAGACTCTGAGATGGATAAGGCAGCTGGTTCAGTGCATGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAGAGGGgtgcctgcctgtctgggcaggctctattttggcaggctgtaatggtgaaa Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCT-GAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG atattgtcacctgtaagtcaatcgagttcaaattctttctcttcctttagAATCTTCAGGGGCCTTGAATCTTGAAGA-CTCTGAGATGGATAAGGCAGCTGGTTCAGTGCATGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAGAGGGgtgcctgcctgtctgggcaggctctattttggcaggctgtaatggtgaaa Alignment from Pairagon AGTCTCCAGGGGCCTCGAA-CCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG atattgtcacctgtaagtcaatcgagttcaaattctttctcttcctttagAATCTTCAGGGGCCTTGAATCTTGAAGA-CTCTGAGATGGATAAGGCAGCTGGTTCAGTGCATGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAGAGGGgtgcctgcctgtctgggcaggctctattttggcaggctgtaatggtgaaa Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG atattgtcacctgtaagtcaatcgagttcaaattctttctcttcctttagAATCTTCAGGGGCCTTGAATCTTGAAGACTCTGAGATGGATAAGGCAGCTGGTTCAGTGCATGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAGAGGGgtgcctgcctgtctgggcaggctctattttggcaggctgtaatggtgaaa Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG atattgtcacctgtaagtcaatcgagttcaaattctttctcttcctttagAATCTTCAGGGGCCTTGAATCTTGAAGACTCTGAGATGGATAAGGCAGCTGGTTCAGTGCATGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAGAGGGgtgcctgcctgtctgggcaggctctattttggcaggctgtaatggtgaaa Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG atattgtcacctgtaagtcaatcgagttcaaattctttctcttcctttagAATCTTCAGGGGCCTTGAATCTTGAAGACTCTGAGATGGATAAGGCAGCTGGTTCAGTGCATGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAGAGGGgtgcctgcctgtctgggcaggctctattttggcaggctgtaatggtgaaa #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAg aagtatgccattccgttccagaccccacgtgatgtttctccctcctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTCGTGTTCCTTC-GCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACCTATTATTACTCTTTAGTAGAGggtaaggcatcaggggtcactattctgcaaagccagcagaactcatgccca Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATAT---TACCCTCTGGTGGAAg aagtatgccattccgttccagaccccacgtgatgtttctccctcctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTCGTGTTCCTTCGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACCTATTATTACTCTTTAGTAGAGggtaaggcatcaggggtcactattctgcaaagccagcagaactcatgccca Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG aagtatgccattccgttccagaccccacgtgatgtttctccctcctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTCGTGTTCCTTCGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACCTATTATTACTCTTTAGTAGAGGgtaaggcatcaggggtcactattctgcaaagccagcagaactcatgccca Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTA---CCCTCTGGTGGAAG aagtatgccattccgttccagaccccacgtgatgtttctccctcctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTCGTGTTCCTTC-GCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACCTATTATTACTCTTTAGTAGAGGgtaaggcatcaggggtcactattctgcaaagccagcagaactcatgccca Alignment from Pairagon TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAAC-GGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG aagtatgccattccgttccagaccccacgtgatgtttctccctcctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTCGTGTTCCTTC-GCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACCTATTATTACTCTTTAGTAGAGGgtaaggcatcaggggtcactattctgcaaagccagcagaactcatgccca Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG aagtatgccattccgttccagaccccacgtgatgtttctccctcctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTCGTGTTCCTTCGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACCTATTATTACTCTTTAGTAGAGGgtaaggcatcaggggtcactattctgcaaagccagcagaactcatgccca Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG aagtatgccattccgttccagaccccacgtgatgtttctccctcctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTCGTGTTCCTTCGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACCTATTATTACTCTTTAGTAGAGGgtaaggcatcaggggtcactattctgcaaagccagcagaactcatgccca Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAG aagtatgccattccgttccagaccccacgtgatgtttctccctcctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTCGTGTTCCTTCGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACCTATTATTACTCTTTAGTAGAGGgtaaggcatcaggggtcactattctgcaaagccagcagaactcatgccca #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAG-CGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gcatgtgcttgtatttattaagtctcaatgtgtgttccttctcttaacagacAAGGAAGAA------AGTAAACAGGAGGA-GTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACACTCTGGTGGGTCTGCAGGGGGTTATGGAGATGCTGGGGGAggtgaggaagctaaatgaaaggagaaaggaaggagattggttgatgatatt Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gcatgtgcttgtatttattaagtctcaatgtgtgttccttctcttaacagacAAGGAAGAA------AGTAAACAGGAGGAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACACTCTGGTGGGTCTGCAGGGGGTTATGGAGATGCTGGGGGAggtgaggaagctaaatgaaaggagaaaggaaggagattggttgatgatatt Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgcttgtatttattaagtctcaatgtgtgttccttctcttaacagACAAGGAAGAA------AGTAAACAGGAGGAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACACTCTGGTGGGTCTGCAGGGGGTTATGGAGATGCTGGGGGAGgtgaggaagctaaatgaaaggagaaaggaaggagattggttgatgatatt Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgcttgtatttattaagtctcaatgtgtgttccttctcttaacagACAAGGAAGAA------AGTAAACAGGAGGAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACACTCTGGTGGGTCTGCAGGGGGTTATGGAGATGCTGGGGGAGgtgaggaagctaaatgaaaggagaaaggaaggagattggttgatgatatt Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAA-------------AGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgcttgtatttattaagtctcaatgtgtgttccttctcttaacagACAAGGA-------------------AGAAAGTAAACAGGAGGAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACACTCTGGTGGGTCTGCAGGGGGTTATGGAGATGCTGGGGGAGgtgaggaagctaaatgaaaggagaaaggaaggagattggttgatgatatt Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgcttgtatttattaagtctcaatgtgtgttccttctcttaacagACAAGGAAGAA------AGTAAACAGGAGGAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACACTCTGGTGGGTCTGCAGGGGGTTATGGAGATGCTGGGGGAGgtgaggaagctaaatgaaaggagaaaggaaggagattggttgatgatatt Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgcttgtatttattaagtctcaatgtgtgttccttctcttaacagACAAGGAAGAA------AGTAAACAGGAGGAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACACTCTGGTGGGTCTGCAGGGGGTTATGGAGATGCTGGGGGAGgtgaggaagctaaatgaaaggagaaaggaaggagattggttgatgatatt Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgcttgtatttattaagtctcaatgtgtgttccttctcttaacagACAAGGAAGAA------AGTAAACAGGAGGAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACACTCTGGTGGGTCTGCAGGGGGTTATGGAGATGCTGGGGGAGgtgaggaagctaaatgaaaggagaaaggaaggagattggttgatgatatt #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGAT-CTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagtagccacttaggatgattaccaccaacctcctttcccattcccaggaCTATACCCTGTGCACCTAGCAGTACATGCACAAAGCCCTAAATGTCTGGATCCTTTTAG-TGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAGGCAAGGGAGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTAGCCCATTTAGTCACCAAGgtggcaattcaactgtttggactaaaaatcgtggtaagataatatatgct Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagtagccacttaggatgattaccaccaacctcctttcccattcccaggaCTATACCCTGTGCACCTAGCAGTACATGCACAAAGCCCTAAATGTCTGGATCCTTTTAGTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAGGCAAGGGAGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTAGCCCATTTAGTCACCAAGgtggcaattcaactgtttggactaaaaatcgtggtaagataatatatgct Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagtagccacttaggatgattaccaccaacctcctttcccattcccagGACTATACCCTGTGCACCTAGCAGTACATGCACAAAGCCCTAAATGTCTGGATCCTTTTAGTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAGGCAAGGGAGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTAGCCCATTTAGTCACCAAGgtggcaattcaactgtttggactaaaaatcgtggtaagataatatatgct Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagtagccacttaggatgattaccaccaacctcctttcccattcccagGACTATACCCTGTGCACCTAGCAGTACATGCACAAAGCCCTAAATGTCTGGATCCTTTTAGTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAGGCAAGGGAGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTAGCCCATTTAGTCACCAAGgtggcaattcaactgtttggactaaaaatcgtggtaagataatatatgct Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagtagccacttaggatgattaccaccaacctcctttcccattcccagGACTATACCCTGTGCACCTAGCAGTACATGCACAAAGCCCTAAATGTCTGGATCCTTTTAGTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAGGCAAGGGAGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTAGCCCATTTAGTCACCAAGgtggcaattcaactgtttggactaaaaatcgtggtaagataatatatgct Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagtagccacttaggatgattaccaccaacctcctttcccattcccagGACTATACCCTGTGCACCTAGCAGTACATGCACAAAGCCCTAAATGTCTGGATCCTTTTAGTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAGGCAAGGGAGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTAGCCCATTTAGTCACCAAGgtggcaattcaactgtttggactaaaaatcgtggtaagataatatatgct Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagtagccacttaggatgattaccaccaacctcctttcccattcccagGACTATACCCTGTGCACCTAGCAGTACATGCACAAAGCCCTAAATGTCTGGATCCTTTTAGTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAGGCAAGGGAGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTAGCCCATTTAGTCACCAAGgtggcaattcaactgtttggactaaaaatcgtggtaagataatatatgct Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagtagccacttaggatgattaccaccaacctcctttcccattcccagGACTATACCCTGTGCACCTAGCAGTACATGCACAAAGCCCTAAATGTCTGGATCCTTTTAGTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAGGCAAGGGAGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTAGCCCATTTAGTCACCAAGgtggcaattcaactgtttggactaaaaatcgtggtaagataatatatgct #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAG-CCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaactgttttgtttccaaccatcaggcGCTGATACCCATACAGAGAATGAAGAGCCCAC-GTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGACCTCACTCGCAGTACAAAGgtaaggtacacggagtctgctactgttcagaaaggattcaagtggttgta Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaactgttttgtttccaaccatcaggcGCTGATACCCATACAGAGAATGAAGAGCCCACGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGACCTCACTCGCAGTACAAAGgtaaggtacacggagtctgctactgttcagaaaggattcaagtggttgta Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaactgttttgtttccaaccatcagGCGCTGATACCCATACAGAGAATGAAGAGCCCACGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGACCTCACTCGCAGTACAAAGgtaaggtacacggagtctgctactgttcagaaaggattcaagtggttgta Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaactgttttgtttccaaccatcagGCGCTGATACCCATACAGAGAATGAAGAGCCCACGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGACCTCACTCGCAGTACAAAGgtaaggtacacggagtctgctactgttcagaaaggattcaagtggttgta Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaactgttttgtttccaaccatcagGCGCTGATACCCATACAGAGAATGAAGAGCCCACGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGACCTCACTCGCAGTACAAAGgtaaggtacacggagtctgctactgttcagaaaggattcaagtggttgta Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaactgttttgtttccaaccatcagGCGCTGATACCCATACAGAGAATGAAGAGCCCACGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGACCTCACTCGCAGTACAAAGgtaaggtacacggagtctgctactgttcagaaaggattcaagtggttgta Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGGTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGA cagttagagactataagtagtctttcaactgttttgtttccaaccatcagGCGCTGATACCCATACAGAGAATGAAGAGCCCACGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGACCTCACTCGCAGTACAAAGGTAAGGTACACGGAGTCTGCTACTGTTCAGAAAGGATTCAAgtggttgta Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaactgttttgtttccaaccatcagGCGCTGATACCCATACAGAGAATGAAGAGCCCACGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGACCTCACTCGCAGTACAAAGgtaaggtacacggagtctgctactgttcagaaaggattcaagtggttgta #### Noc3l_ID7658_17 --> 2 - 0 Original Alignment gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGT-ACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT caccccttgaatacgtgaggtgatgaatcagcagctttctttctctttaggcACCACTAATGATGGCATAGAGATTGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGTCTTTGTCACCCTAG-GTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctcaagagacttaagttgtgtgcaggtcaaacaggcta Alignment from CESAR gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT caccccttgaatacgtgaggtgatgaatcagcagctttctttctctttaggcACCACTAATGATGGCATAGAGATTGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGTCTTTGTCACCCTAGGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctcaagagacttaagttgtgtgcaggtcaaacaggcta Alignment from Spaln_aa2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT caccccttgaatacgtgaggtgatgaatcagcagctttctttctctttagGCACCACTAATGATGGCATAGAGATTGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGTCTTTGTCACCCTAGGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctcaagagacttaagttgtgtgcaggtcaaacaggcta Alignment from Spaln_nt2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT caccccttgaatacgtgaggtgatgaatcagcagctttctttctctttagGCACCACTAATGATGGCATAGAGATTGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGAGGGCTATTGCCTTCATCAAGCGTCTTTGTCACCCTAGGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctcaagagacttaagttgtgtgcaggtcaaacaggcta Alignment from Pairagon GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT caccccttgaatacgtgaggtgatgaatcagcagctttctttctctttagGCACCACTAATGATGGCATAGAGATTGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGAGGGCTATTGCCTTCATCAAGCGTCTTTGTCACCCTAGGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctcaagagacttaagttgtgtgcaggtcaaacaggcta Alignment from Exonerate_protein2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT caccccttgaatacgtgaggtgatgaatcagcagctttctttctctttagGCACCACTAATGATGGCATAGAGATTGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGTCTTTGTCACCCTAGGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctcaagagacttaagttgtgtgcaggtcaaacaggcta Alignment from Exonerate_coding2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT caccccttgaatacgtgaggtgatgaatcagcagctttctttctctttagGCACCACTAATGATGGCATAGAGATTGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGTCTTTGTCACCCTAGGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctcaagagacttaagttgtgtgcaggtcaaacaggcta Alignment from GeneWise GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT caccccttgaatacgtgaggtgatgaatcagcagctttctttctctttagGCACCACTAATGATGGCATAGAGATTGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGTCTTTGTCACCCTAGGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctcaagagacttaagttgtgtgcaggtcaaacaggcta #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg cattttgtctccctttcatttcactaaaaggccctggtctgtttctgcaggaGATGATTTGAATATTGACCCGCATGAAATTTT-TACCCCACTATTTCAGACACTATTTACATTGCATGCAggtatctcattgtagcttagagcctttatattcagtggtgctagtattaac Alignment from CESAR gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg cattttgtctccctttcatttcactaaaaggccctggtctgtttctgcaggaGATGATTTGAATATTGACCCGCATGAAATTTTTACCCCACTATTTCAGACACTATTTACATTGCATGCAggtatctcattgtagcttagagcctttatattcagtggtgctagtattaac Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattttgtctccctttcatttcactaaaaggccctggtctgtttctgcagGAGATGATTTGAATATTGACCCGCATGAAATTTTTACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatctcattgtagcttagagcctttatattcagtggtgctagtattaac Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattttgtctccctttcatttcactaaaaggccctggtctgtttctgcagGAGATGATTTGAATATTGACCCGCATGAAATT-TTTACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatctcattgtagcttagagcctttatattcagtggtgctagtattaac Alignment from Pairagon GTGATGTTTTAAATATTGACCCG-ATGAAA---------------TTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattttgtctccctttcatttcactaaaaggccctggtctgtttctgcagGAGATGATTTGAATATTGACCCGCATGAAATTTTTACCCCACTATTTC----------------AGACACTATTTACATTGCATGCAGgtatctcattgtagcttagagcctttatattcagtggtgctagtattaac Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattttgtctccctttcatttcactaaaaggccctggtctgtttctgcagGAGATGATTTGAATATTGACCCGCATGAAATTTTTACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatctcattgtagcttagagcctttatattcagtggtgctagtattaac Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattttgtctccctttcatttcactaaaaggccctggtctgtttctgcagGAGATGATTTGAATATTGACCCGCATGAAATTTTTACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatctcattgtagcttagagcctttatattcagtggtgctagtattaac Alignment from GeneWise GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattttgtctccctttcatttcactaaaaggccctggtctgtttctgcagGAGATGATTTGAATATTGACCCGCATGAAATTTTTACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatctcattgtagcttagagcctttatattcagtggtgctagtattaac #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATG-GTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtggacggcctgatagcacttgagatgtcaagtgccatttcctatttcagttGCTGAAAGTGGGGATATCCAGGCTGAGATGCCTAGTGAGGC-TCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATaggtaggatgggggccaccagatgatgacaactgctgtatttggttggtaaa Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtggacggcctgatagcacttgagatgtcaagtgccatttcctatttcagttGCTGAAAGTGGGGATATCCAGGCTGAGATGCCTAGTGAGGCTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATaggtaggatgggggccaccagatgatgacaactgctgtatttggttggtaaa Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggacggcctgatagcacttgagatgtcaagtgccatttcctatttcagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCCTAGTGAGGCTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggggccaccagatgatgacaactgctgtatttggttggtaaa Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggacggcctgatagcacttgagatgtcaagtgccatttcctatttcagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCCTAGTGAGGCTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggggccaccagatgatgacaactgctgtatttggttggtaaa Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATG-GTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggacggcctgatagcacttgagatgtcaagtgccatttcctatttcagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCCTAGTGAGGC-TCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggggccaccagatgatgacaactgctgtatttggttggtaaa Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggacggcctgatagcacttgagatgtcaagtgccatttcctatttcagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCCTAGTGAGGCTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggggccaccagatgatgacaactgctgtatttggttggtaaa Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggacggcctgatagcacttgagatgtcaagtgccatttcctatttcagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCCTAGTGAGGCTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggggccaccagatgatgacaactgctgtatttggttggtaaa Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggacggcctgatagcacttgagatgtcaagtgccatttcctatttcagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCCTAGTGAGGCTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggggccaccagatgatgacaactgctgtatttggttggtaaa #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg caataactgttgatacccattgaagtacctctcctctctgttgcttacagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTCTCAGGTCCAG-TCGAATC---------CATCACATTggcaagtgggcagaatgtcgaggactattatgcagtgatttgccagcaaca Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg caataactgttgatacccattgaagtacctctcctctctgttgcttacagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTCTCAGGTCCAGTCGAATC---------CATCACATTggcaagtgggcagaatgtcgaggactattatgcagtgatttgccagcaaca Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG caataactgttgatacccattgaagtacctctcctctctgttgcttacagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTCTCAGGTCCAGTCGAATC---------CATCACATTGgcaagtgggcagaatgtcgaggactattatgcagtgatttgccagcaaca Alignment from Spaln_nt2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG caataactgttgatacccattgaagtacctctcctctctgttgcttacagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTCTCAGGTCCAG-TCGAATC---------CATCACATTGgcaagtgggcagaatgtcgaggactattatgcagtgatttgccagcaaca Alignment from Pairagon CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG caataactgttgatacccattgaagtacctctcctctctgttgcttacagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTCTCAGGTCCAG-TCGAATC---------CATCACATTGgcaagtgggcagaatgtcgaggactattatgcagtgatttgccagcaaca Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG caataactgttgatacccattgaagtacctctcctctctgttgcttacagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTCTCAGGTCCAGTCGAATC---------CATCACATTGgcaagtgggcagaatgtcgaggactattatgcagtgatttgccagcaaca Alignment from Exonerate_coding2genome caataactgttgatacccattgaagtacctctcctctctgttgcttacagcttggtgttgatgatctccaacttcaaccaccagtttccttccgattgaggtcaggtctcaggtccagtcgaatccatcacattggcaagtgggcagaatgtcgaggactattatgcagtgatttgccagcaaca Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATC------ACTGGCCGGCATCAGATCG caataactgttgatacccattgaagtacctctcctctctgttgcttacagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTCTCAGGTCCAGTCGAATCCATCACATTGGCAAGTGGGCAGAATgtcgaggactattatgcagtgatttgccagcaaca #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGAT-CACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ttttcttcagccaatatcatcaaagacactgctctcttttcaccctgtagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATAGAAGTTGTCGCCAGGGACCTATGGCA-CCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGCCAACCAATGgtaactttgaaacactcatttctgtggggccctaacattcaataactgtt Alignment from CESAR CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ttttcttcagccaatatcatcaaagacactgctctcttttcaccctgtagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATAGAAGTTGTCGCCAGGGACCTATGGCACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGCCAACCAATGgtaactttgaaacactcatttctgtggggccctaacattcaataactgtt Alignment from Spaln_aa2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ttttcttcagccaatatcatcaaagacactgctctcttttcaccctgtagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATAGAAGTTGTCGCCAGGGACCTATGGCACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGCCAACCAATGgtaactttgaaacactcatttctgtggggccctaacattcaataactgtt Alignment from Spaln_nt2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ttttcttcagccaatatcatcaaagacactgctctcttttcaccctgtagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATAGAAGTTGTCGCCAGGGACCTATGGCACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGCCAACCAATGgtaactttgaaacactcatttctgtggggccctaacattcaataactgtt Alignment from Pairagon CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGAT------CACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ttttcttcagccaatatcatcaaagacactgctctcttttcaccctgtagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATAGAAGTTGTCGCCAGGGACCTATGGCAC------CAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGCCAACCAATGgtaactttgaaacactcatttctgtggggccctaacattcaataactgtt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ttttcttcagccaatatcatcaaagacactgctctcttttcaccctgtagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATAGAAGTTGTCGCCAGGGACCTATGGCACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGCCAACCAATGgtaactttgaaacactcatttctgtggggccctaacattcaataactgtt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATGCTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTT ttttcttcagccaatatcatcaaagacactgctctcttttcaccctgtagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATAGAAGTTGTCGCCAGGGACCTATGGCACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGCCAACCAATGGTAACTTTGAAACACTCATTTCTGTGGGGCCCTAACATTCAataactgtt Alignment from GeneWise CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ttttcttcagccaatatcatcaaagacactgctctcttttcaccctgtagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATAGAAGTTGTCGCCAGGGACCTATGGCACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGCCAACCAATGgtaactttgaaacactcatttctgtggggccctaacattcaataactgtt #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTG-TTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggactagatataggcgcggtgttaaattattccctgcagGAAGTAACTCATGACATGGATATGTGCTATGGCATGATGGGAAGTCTGCTTCCGGA-TAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtacggactgatccttatggctgacagttgatgcaacaccacagtcacta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggactagatataggcgcggtgttaaattattccctgcagGAAGTAACTCATGACATGGATATGTGCTATGGCATGATGGGAAGTCTGCTTCCGGATAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtacggactgatccttatggctgacagttgatgcaacaccacagtcacta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggactagatataggcgcggtgttaaattattccctgcagGAAGTAACTCATGACATGGATATGTGCTATGGCATGATGGGAAGTCTGCTTCCGGATAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtacggactgatccttatggctgacagttgatgcaacaccacagtcacta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggactagatataggcgcggtgttaaattattccctgcagGAAGTAACTCATGACATGGATATGTGCTATGGCATGATGGGAAGTCTGCTTCCGGATAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtacggactgatccttatggctgacagttgatgcaacaccacagtcacta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggactagatataggcgcggtgttaaattattccctgcagGAAGTAACTCATGACATGGATATGTGCTATGGCATGATGGGAAGTCTGCTTCCGGATAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtacggactgatccttatggctgacagttgatgcaacaccacagtcacta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggactagatataggcgcggtgttaaattattccctgcagGAAGTAACTCATGACATGGATATGTGCTATGGCATGATGGGAAGTCTGCTTCCGGATAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtacggactgatccttatggctgacagttgatgcaacaccacagtcacta Alignment from Exonerate_coding2genome gtattgccaaaggactagatataggcgcggtgttaaattattccctgcaggaagtaactcatgacatggatatgtgctatggcatgatgggaagtctgcttccggatagctcccagcagacactctttgccagcctagttatgcgttatgcagacctctacacatcctcattcattaacctactgtactacccattcagttacctcttcagagctgcccatgtcctggtacggactgatccttatggctgacagttgatgcaacaccacagtcacta Alignment from GeneWise GTAGCAATGAGCGCCCGGACATTAGTTCCATC---CAGAGACGGATTAAGAAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG GTATTGCCAAAGGACTAGATATAGGCGCGGTGTTAAATTATTCCCTGCAGGAAGTAACTCATGACATGGATATGTGCTATGGCATGATGGGAAGTCTGCTTCCGGATAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtacggactgatccttatggctgacagttgatgcaacaccacagtcacta #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATC-GATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcccctattttgagttagttgtctggtcttgccctctccccatacagacTTGGTAGCTCAGAACATTCGTCG-CATTCTAAACCGCAGGAGTTGCATGGCAGCAACTGTTCGCACCATCAAGGACAACATTCCTGAGgtaggtgttccttctctctgttatcatttaattgtgcttacttaattaga Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcccctattttgagttagttgtctggtcttgccctctccccatacagacTTGGTAGCTCAGAACATTCGTCGCATTCTAAACCGCAGGAGTTGCATGGCAGCAACTGTTCGCACCATCAAGGACAACATTCCTGAGgtaggtgttccttctctctgttatcatttaattgtgcttacttaattaga Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcccctattttgagttagttgtctggtcttgccctctccccatacagACTTGGTAGCTCAGAACATTCGTCGCATTCTAAACCGCAGGAGTTGCATGGCAGCAACTGTTCGCACCATCAAGGACAACATTCCTGAGgtaggtgttccttctctctgttatcatttaattgtgcttacttaattaga Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG C tgggcccctattttgagttagttgtctggtcttgccctctccccatacagACTTGGTAGCTCAGAACATTCGTCGCATTCTAAACCGCAGGAGTTGCATGGCAGCAACTGTTCGCACCATCAAGGACAACATTCCTGAGgtaggtgttccttctctctgttatcatttaattgtgcttacttaattagA Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcccctattttgagttagttgtctggtcttgccctctccccatacagACTTGGTAGCTCAGAACATTCGTCGCATTCTAAACCGCAGGAGTTGCATGGCAGCAACTGTTCGCACCATCAAGGACAACATTCCTGAGgtaggtgttccttctctctgttatcatttaattgtgcttacttaattaga Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAGCTA tgggcccctattttgagttagttgtctggtcttgccctctccccatacagACTTGGTAGCTCAGAACATTCGTCGCATTCTAAACCGCAGGAGTTGCATGGCAGCAACTGTTCGCACCATCAAGGACAACATTCCTGAG---gtaggtgttccttctctctgttatcatttaattgtgcttacttaatt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAGCTA tgggcccctattttgagttagttgtctggtcttgccctctccccatacagACTTGGTAGCTCAGAACATTCGTCGCATTCTAAACCGCAGGAGTTGCATGGCAGCAACTGTTCGCACCATCAAGGACAACATTCCTGAG---gtaggtgttccttctctctgttatcatttaattgtgcttacttaatt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAGCTATTG tgggcccctattttgagttagttgtctggtcttgccctctccccatacagACTTGGTAGCTCAGAACATTCGTCGCATTCTAAACCGCAGGAGTTGCATGGCAGCAACTGTTCGCACCATCAAGGACAACATTCCTGAGGTAGGTgttccttctctctgttatcatttaattgtgcttacttaattaga #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGAT-ATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatgtgtaataaataggttaatattttgcaccttttgctttccag---TTGTCTTTGAACTTGAGCAGCAACCGGCTATTCAAGCTGGACGACCATGT-AGGTATTGTGCAAACAGCTCCAAATATAAAAACTTTAAATCTTCCTGGAAAGGAGgtaagatggcatttaggataatcaatgatttttaattagtagtagttgaa Alignment from CESAR CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatgtgtaataaataggttaatattttgcaccttttgctttccag---TTGTCTTTGAACTTGAGCAGCAACCGGCTATTCAAGCTGGACGACCATGTAGGTATTGTGCAAACAGCTCCAAATATAAAAACTTTAAATCTTCCTGGAAAGGAGgtaagatggcatttaggataatcaatgatttttaattagtagtagttgaa Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatgtgtaataaataggttaatattttgcaccttttgctttccag---TTGTCTTTGAACTTGAGCAGCAACCGGCTATTCAAGCTGGACGACCATGTAGGTATTGTGCAAACAGCTCCAAATATAAAAACTTTAAATCTTCCTGGAAAGGAGgtaagatggcatttaggataatcaatgatttttaattagtagtagttgaa Alignment from Spaln_nt2Genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGAT-ATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatgtgtaataaataggttaatattttgcaccttttgctttccagTTGTCTTTGAACTTGAGCAGCAACCGGCTATTCAAGCTGGACGACCATGT-AGGTATTGTGCAAACAGCTCCAAATATAAAAACTTTAAATCTTCCTGGAAAGGAGgtaagatggcatttaggataatcaatgatttttaattagtagtagttgaa Alignment from Pairagon CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGA-----TATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatgtgtaataaataggttaatattttgcaccttttgctttccag---TTGTCTTTGAACTTGAGCAGCAACCGGCTATTCAAGCTGGACGACCATGTAGGT-----ATTGTGCAAACAGCTCCAAATATAAAAACTTTAAATCTTCCTGGAAAGGAGgtaagatggcatttaggataatcaatgatttttaattagtagtagttgaa Alignment from Exonerate_protein2genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatgtgtaataaataggttaatattttgcaccttttgctttccagTTGTCTTTGAACTTGAGCAGCAACCGGCTATTCAAGCTGGACGACCATGTAGGTATTGTGCAAACAGCTCCAAATATAAAAACTTTAAATCTTCCTGGAAAGGAGgtaagatggcatttaggataatcaatgatttttaattagtagtagttgaa Alignment from Exonerate_coding2genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatgtgtaataaataggttaatattttgcaccttttgctttccagTTGTCTTTGAACTTGAGCAGCAACCGGCTATTCAAGCTGGACGACCATGTAGGTATTGTGCAAACAGCTCCAAATATAAAAACTTTAAATCTTCCTGGAAAGGAGgtaagatggcatttaggataatcaatgatttttaattagtagtagttgaa Alignment from GeneWise ---TCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatgtgtaataaataggttaatattttgcaccttttgctttccagTTGTCTTTGAACTTGAGCAGCAACCGGCTATTCAAGCTGGACGACCATGTAGGTATTGTGCAAACAGCTCCAAATATAAAAACTTTAAATCTTCCTGGAAAGGAGgtaagatggcatttaggataatcaatgatttttaattagtagtagttgaa #### Nxf1_ID2352_12 --> 0 - 0 Original Alignment GATGGCCATGAG-CTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG cccaagatgcccaggtcatcacaagttctaacctactctgtcccctgcagGATGGTCATCAGCCTACCCC-CCCGATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtaagggttgggtgcactttagaaattcaagagaagagatcgcaggtcat Alignment from CESAR GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG cccaagatgcccaggtcatcacaagttctaacctactctgtcccctgcagGATGGTCATCAGCCTACCCCCCCGATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtaagggttgggtgcactttagaaattcaagagaagagatcgcaggtcat Alignment from Spaln_aa2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG cccaagatgcccaggtcatcacaagttctaacctactctgtcccctgcagGATGGTCATCAGCCTACCCCCCCGATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtaagggttgggtgcactttagaaattcaagagaagagatcgcaggtcat Alignment from Spaln_nt2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG cccaagatgcccaggtcatcacaagttctaacctactctgtcccctgcagGATGGTCATCAGCCTACCCCCCCGATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtaagggttgggtgcactttagaaattcaagagaagagatcgcaggtcat Alignment from Pairagon GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG cccaagatgcccaggtcatcacaagttctaacctactctgtcccctgcagGATGGTCATCAGCCTACCCCCCCGATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtaagggttgggtgcactttagaaattcaagagaagagatcgcaggtcat Alignment from Exonerate_protein2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG cccaagatgcccaggtcatcacaagttctaacctactctgtcccctgcagGATGGTCATCAGCCTACCCCCCCGATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtaagggttgggtgcactttagaaattcaagagaagagatcgcaggtcat Alignment from Exonerate_coding2genome GGATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG cccaagatgcccaggtcatcacaagttctaacctactctgtcccctgcaGGATGGTCATCAGCCTACCCCCCCGATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtaagggttgggtgcactttagaaattcaagagaagagatcgcaggtcat Alignment from GeneWise GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG cccaagatgcccaggtcatcacaagttctaacctactctgtcccctgcagGATGGTCATCAGCCTACCCCCCCGATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtaagggttgggtgcactttagaaattcaagagaagagatcgcaggtcat #### Osbp_ID3347_6 --> 1 - 0 Original Alignment aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG gatttagaatcctgggtatagctcttttcaaacacctctctgttttccagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCA-CCTTGATGAACAAgtgaggctacgtcctccggaggtgtgtcaagtcctgcttacccattacaa Alignment from CESAR aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatttagaatcctgggtatagctcttttcaaacacctctctgttttccagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAACAAgtgaggctacgtcctccggaggtgtgtcaagtcctgcttacccattacaa Alignment from Spaln_aa2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatttagaatcctgggtatagctcttttcaaacacctctctgttttccagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAACAAgtgaggctacgtcctccggaggtgtgtcaagtcctgcttacccattacaa Alignment from Spaln_nt2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatttagaatcctgggtatagctcttttcaaacacctctctgttttccagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAACAAgtgaggctacgtcctccggaggtgtgtcaagtcctgcttacccattacaa Alignment from Pairagon ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatttagaatcctgggtatagctcttttcaaacacctctctgttttccagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAACAAgtgaggctacgtcctccggaggtgtgtcaagtcctgcttacccattacaa Alignment from Exonerate_protein2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatttagaatcctgggtatagctcttttcaaacacctctctgttttccagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAACAAgtgaggctacgtcctccggaggtgtgtcaagtcctgcttacccattacaa Alignment from Exonerate_coding2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatttagaatcctgggtatagctcttttcaaacacctctctgttttccagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAACAAgtgaggctacgtcctccggaggtgtgtcaagtcctgcttacccattacaa Alignment from GeneWise ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gatttagaatcctgggtatagctcttttcaaacacctctctgttttccagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAACAAgtgaggctacgtcctccggaggtgtgtcaagtcctgcttacccattacaa #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAG-AGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG aaccatcttcatactttgtcataccatgttcccctcctcttcccttgcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTTGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAACAGCA-GTTCTTTGAACACTTCATTGAGGGTGGCCAA---------------AGTCAGGAGgtactccctcccccaccacctgcactgaggccccccttttttttcttgat Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG aaccatcttcatactttgtcataccatgttcccctcctcttcccttgcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTTGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAACAGCAGTTCTTTGAACACTTCATTGAGGGTGGCCAAAGT---------------CAGGAGgtactccctcccccaccacctgcactgaggccccccttttttttcttgat Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG aaccatcttcatactttgtcataccatgttcccctcctcttcccttgcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTTGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAACAGCAGTTCTTTGAACACTTCATTGAGGGTGGCCAAAGT---------------CAGGAGgtactccctcccccaccacctgcactgaggccccccttttttttcttgat Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGA aaccatcttcatactttgtcataccatgttcccctcctcttcccttgcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTTGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAACAGCAGTTCTTTGAACACTTCATTGAGGGTGGCCAAAgtcaggaggtactccctcccccaccacctgcactgaggccccccttttttttcttgat Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGA aaccatcttcatactttgtcataccatgttcccctcctcttcccttgcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTTGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAACAGCAGTTCTTTGAACACTTCATTGAGGGTGGCCAAAgtcaggaggtactccctcccccaccacctgcactgaggccccccttttttttcttgat Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGA aaccatcttcatactttgtcataccatgttcccctcctcttcccttgcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTTGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAACAGCAGTTCTTTGAACACTTCATTGAGGGTGGCCAAAgtcaggaggtactccctcccccaccacctgcactgaggccccccttttttttcttgat Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGA aaccatcttcatactttgtcataccatgttcccctcctcttcccttgcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTTGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAACAGCAGTTCTTTGAACACTTCATTGAGGGTGGCCAAAgtcaggaggtactccctcccccaccacctgcactgaggccccccttttttttcttgat Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGG- aaccatcttcatactttgtcataccatgttcccctcctcttcccttgcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTTGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAACAGCAGTTCTTTGAACACTTCATTGAGGGTGGCCAAAgtcaggaggtactccctcccccaccacctgcactgaggccccccttttttttcttgat #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt ttacaggtctactggaatattactcttattctctattttcccacctccagaaCCACTAGACGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACGCCACCAGC-TCCTATCGCAGAAGCTATGCTGACCTGCAGACATAAGttgtgggcccactatgagaactttcaggaaagcagcttgcactaatagatga Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt ttacaggtctactggaatattactcttattctctattttcccacctccagaaCCACTAGACGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACGCCACCAGCTCCTATCGCAGAAGCTATGCTGACCTGCAGACATAAGttgtgggcccactatgagaactttcaggaaagcagcttgcactaatagatga Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttacaggtctactggaatattactcttattctctattttcccacctccagAACCACTAGACGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACGCCACCAGCTCCTATCGCAGAAGCTATGCTGACCTGCAGACATAAGTTgtgggcccactatgagaactttcaggaaagcagcttgcactaatagatga Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttacaggtctactggaatattactcttattctctattttcccacctccagAACCACTAGACGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACGCCACCAGCTCCTATCGCAGAAGCTATGCTGACCTGCAGACATAAGTTgtgggcccactatgagaactttcaggaaagcagcttgcactaatagatga Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttacaggtctactggaatattactcttattctctattttcccacctccagAACCACTAGACGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACGCCACCAGCT-CCTATCGCAGAAGCTATGCTGACCTGCAGACATAAGTTgtgggcccactatgagaactttcaggaaagcagcttgcactaatagatga Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttacaggtctactggaatattactcttattctctattttcccacctccagAACCACTAGACGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACGCCACCAGCTCCTATCGCAGAAGCTATGCTGACCTGCAGACATAAGTTgtgggcccactatgagaactttcaggaaagcagcttgcactaatagatga Alignment from Exonerate_coding2genome ttacaggtctactggaatattactcttattctctattttcccacctccagaaccactagacgtggtgggtcatgtgatgctgtacatcaatggttctataacaacgccaccagctcctatcgcagaagctatgctgacctgcagacataagttgtgggcccactatgagaactttcaggaaagcagcttgcactaatagatga Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ttacaggtctactggaatattactcttattctctattttcccacctccagAACCACTAGACGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACGCCACCAGCTCCTATCGCAGAAGCTATGCTGACCTGCAGACATAAGTTgtgggcccactatgagaactttcaggaaagcagcttgcactaatagatga #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAA-TACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgttcggaatgagtacttcgtctttctcaggcccctctgccccccaggcTCTCATCCAGTAGCCAAGCTACTTAG-CTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAggtgagacccaccagtagcagtttgctacctttggtactatctcccatgac Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgttcggaatgagtacttcgtctttctcaggcccctctgccccccaggcTCTCATCCAGTAGCCAAGCTACTTAGCTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAggtgagacccaccagtagcagtttgctacctttggtactatctcccatgac Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaatgagtacttcgtctttctcaggcccctctgccccccagGCTCTCATCCAGTAGCCAAGCTACTTAGCTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtgagacccaccagtagcagtttgctacctttggtactatctcccatgac Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaatgagtacttcgtctttctcaggcccctctgccccccagGCTCTCATCCAGTAGCCAAGCTACTTAGCTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtgagacccaccagtagcagtttgctacctttggtactatctcccatgac Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaatgagtacttcgtctttctcaggcccctctgccccccagGCTCTCATCCAGTAGCCAAGCTACTTAGCTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtgagacccaccagtagcagtttgctacctttggtactatctcccatgac Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaatgagtacttcgtctttctcaggcccctctgccccccagGCTCTCATCCAGTAGCCAAGCTACTTAGCTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtgagacccaccagtagcagtttgctacctttggtactatctcccatgac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaatgagtacttcgtctttctcaggcccctctgccccccagGCTCTCATCCAGTAGCCAAGCTACTTAGCTCTGTAGACAGCAGGTATAGCAGTACATTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtgagacccaccagtagcagtttgctacctttggtactatctcccatgac #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTG-GCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg tctctcacctaaaatatcaccctttccctaactaggacttattctcttagtTGCAATTGCAACTCATCTATGCCAAGGCCGGTTAAAGTACGCAGCTG-GGGTAGCCAAAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAggtgcagtctcaccaggacttgttgagtaacatcttttaggatgatgctca Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg tctctcacctaaaatatcaccctttccctaactaggacttattctcttagtTGCAATTGCAACTCATCTATGCCAAGGCCGGTTAAAGTACGCAGCTGGGGTAGCCAAAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAggtgcagtctcaccaggacttgttgagtaacatcttttaggatgatgctca Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaatatcaccctttccctaactaggacttattctcttagTTGCAATTGCAACTCATCTATGCCAAGGCCGGTTAAAGTACGCAGCTGGGGTAGCCAAAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtgcagtctcaccaggacttgttgagtaacatcttttaggatgatgctca Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTG-GCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaatatcaccctttccctaactaggacttattctcttagTTGCAATTGCAACTCATCTATGCCAAGGCCGGTTAAAGTACGCAGCTG-GGGTAGCCAAAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtgcagtctcaccaggacttgttgagtaacatcttttaggatgatgctca Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTG-GCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaatatcaccctttccctaactaggacttattctcttagTTGCAATTGCAACTCATCTATGCCAAGGCCGGTTAAAGTACGCAGCTG-GGGTAGCCAAAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtgcagtctcaccaggacttgttgagtaacatcttttaggatgatgctca Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaatatcaccctttccctaactaggacttattctcttagTTGCAATTGCAACTCATCTATGCCAAGGCCGGTTAAAGTACGCAGCTGGGGTAGCCAAAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtgcagtctcaccaggacttgttgagtaacatcttttaggatgatgctca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaatatcaccctttccctaactaggacttattctcttagTTGCAATTGCAACTCATCTATGCCAAGGCCGGTTAAAGTACGCAGCTGGGGTAGCCAAAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtgcagtctcaccaggacttgttgagtaacatcttttaggatgatgctca #### Pacs1_ID879_15 --> 0 - 2 Original Alignment TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCC-CTTCTCACTAGGATTCAGCGCta gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCCTTCTCA-AAGGATTCAGCGAtagtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from CESAR TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCta gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCCTTCTCAAAGGATTCAGCGAtagtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Spaln_aa2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCCTTCTCAAAGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Spaln_nt2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCCTTCTCAAAGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Pairagon TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGC-CCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCCTTCTCAA-AGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Exonerate_protein2genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCCTTCTCAAAGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCCTTCTCAAAGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact #### Pacs1_ID885_9 --> 0 - 2 Original Alignment GTGGGCTTTGGGCTAGAACACGTGTCCCGG-GAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ccaagtattgctggtgaggacctgtagtgtctggttttctatccaaacagGTGGGTTTTGGGTTAGAACATGTGTCCCGGCGAGC-AATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACTCCAAAGCCCAAACTCaagtaactcagtcctgaagcccttcccacccaacttccctaatgctgtttgg Alignment from CESAR GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ccaagtattgctggtgaggacctgtagtgtctggttttctatccaaacagGTGGGTTTTGGGTTAGAACATGTGTCCCGGCGAGCAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACTCCAAAGCCCAAACTCaagtaactcagtcctgaagcccttcccacccaacttccctaatgctgtttgg Alignment from Spaln_aa2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctgtagtgtctggttttctatccaaacagGTGGGTTTTGGGTTAGAACATGTGTCCCGGCGAGCAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACTCCAAAGCCCAAACTCAAgtaactcagtcctgaagcccttcccacccaacttccctaatgctgtttgg Alignment from Spaln_nt2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctgtagtgtctggttttctatccaaacagGTGGGTTTTGGGTTAGAACATGTGTCCCGGCGAGCAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACTCCAAAGCCCAAACTCAAgtaactcagtcctgaagcccttcccacccaacttccctaatgctgtttgg Alignment from Pairagon GTGGGCTTTGGGCTAGAACACGTGTCCCGG-GAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctgtagtgtctggttttctatccaaacagGTGGGTTTTGGGTTAGAACATGTGTCCCGGCGAGCA-ATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACTCCAAAGCCCAAACTCAAgtaactcagtcctgaagcccttcccacccaacttccctaatgctgtttgg Alignment from Exonerate_protein2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctgtagtgtctggttttctatccaaacagGTGGGTTTTGGGTTAGAACATGTGTCCCGGCGAGCAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACTCCAAAGCCCAAACTCAAgtaactcagtcctgaagcccttcccacccaacttccctaatgctgtttgg Alignment from Exonerate_coding2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctgtagtgtctggttttctatccaaacagGTGGGTTTTGGGTTAGAACATGTGTCCCGGCGAGCAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACTCCAAAGCCCAAACTCAAgtaactcagtcctgaagcccttcccacccaacttccctaatgctgtttgg Alignment from GeneWise GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctgtagtgtctggttttctatccaaacagGTGGGTTTTGGGTTAGAACATGTGTCCCGGCGAGCAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACTCCAAAGCCCAAACTCAAgtaactcagtcctgaagcccttcccacccaacttccctaatgctgtttgg #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGC-TTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG actggatattgtgaaactctcattcagtcctttgctctgtcctttcccagacCGCTCCCCAGACATTGACAATTATTCAGAAGAGGAGGAAGAAAGCCTTCTCCTCAG-GCAGGATGACACTGATGATCCGCTGCATGGACAAgtgagaatttggcagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG actggatattgtgaaactctcattcagtcctttgctctgtcctttcccagacCGCTCCCCAGACATTGACAATTATTCAGAAGAGGAGGAAGAAAGCCTTCTCCTCAGGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgagaatttggcagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG actggatattgtgaaactctcattcagtcctttgctctgtcctttcccagACCGCTCCCCAGACATTGACAATTATTCAGAAGAGGAGGAAGAAAGCCTTCTCCTCAGGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgagaatttggcagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGC-TTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG actggatattgtgaaactctcattcagtcctttgctctgtcctttcccagACCGCTCCCCAGACATTGACAATTATTCAGAAGAGGAGGAAGAAAGCCTTCTCCTCAG-GCAGGATGACACTGATGATCCGCTGCATGGACAAgtgagaatttggcagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAG-CTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG actggatattgtgaaactctcattcagtcctttgctctgtcctttcccagACCGCTCCCCAGACATTGACAATTATTCAGAAGAGGAGGAAGAAAGCCTTCTCCTCAG-GCAGGATGACACTGATGATCCGCTGCATGGACAAgtgagaatttggcagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG actggatattgtgaaactctcattcagtcctttgctctgtcctttcccagACCGCTCCCCAGACATTGACAATTATTCAGAAGAGGAGGAAGAAAGCCTTCTCCTCAGGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgagaatttggcagtgtacaagttgaaacagggtgaggcaccacctcac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG actggatattgtgaaactctcattcagtcctttgctctgtcctttcccagACCGCTCCCCAGACATTGACAATTATTCAGAAGAGGAGGAAGAAAGCCTTCTCCTCAGGCAGGATGACACTGATGATCCGCTGCATGGACAAgtgagaatttggcagtgtacaagttgaaacagggtgaggcaccacctcac #### Patl1_ID3332_17 --> 0 - 2 Original Alignment TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGA-GAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGtg ctgaccatgtggttccatacctgaccattgcctgctctttgtcatttcagTTTGGGTTGTCACTGCTCCTAATCCTACTGAGCCGAGGACGAAGACC-GCAGAGCTCTGATCCAGCTATAGAACTTATGCAAAATAATCAGtggtatgatatagtagcaggctatgtgaatcaactctgttgccttccatgtc Alignment from CESAR TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGtg ctgaccatgtggttccatacctgaccattgcctgctctttgtcatttcagTTTGGGTTGTCACTGCTCCTAATCCTACTGAGCCGAGGACGAAGACCGCAGAGCTCTGATCCAGCTATAGAACTTATGCAAAATAATCAGtggtatgatatagtagcaggctatgtgaatcaactctgttgccttccatgtc Alignment from Spaln_aa2Genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG ctgaccatgtggttccatacctgaccattgcctgctctttgtcatttcagTTTGGGTTGTCACTGCTCCTAATCCTACTGAGCCGAGGACGAAGACCGCAGAGCTCTGATCCAGCTATAGAACTTATGCAAAATAATCAGTGgtatgatatagtagcaggctatgtgaatcaactctgttgccttccatgtc Alignment from Spaln_nt2Genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG ctgaccatgtggttccatacctgaccattgcctgctctttgtcatttcagTTTGGGTTGTCACTGCTCCTAATCCTACTGAGCCGAGGACGAAGACCGCAGAGCTCTGATCCAGCTATAGAACTTATGCAAAATAATCAGTGgtatgatatagtagcaggctatgtgaatcaactctgttgccttccatgtc Alignment from Pairagon TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGA-GAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG ctgaccatgtggttccatacctgaccattgcctgctctttgtcatttcagTTTGGGTTGTCACTGCTCCTAATCCTACTGAGCCGAGGACGAAGACC-GCAGAGCTCTGATCCAGCTATAGAACTTATGCAAAATAATCAGTGgtatgatatagtagcaggctatgtgaatcaactctgttgccttccatgtc Alignment from Exonerate_protein2genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG ctgaccatgtggttccatacctgaccattgcctgctctttgtcatttcagTTTGGGTTGTCACTGCTCCTAATCCTACTGAGCCGAGGACGAAGACCGCAGAGCTCTGATCCAGCTATAGAACTTATGCAAAATAATCAGTGgtatgatatagtagcaggctatgtgaatcaactctgttgccttccatgtc Alignment from Exonerate_coding2genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG ctgaccatgtggttccatacctgaccattgcctgctctttgtcatttcagTTTGGGTTGTCACTGCTCCTAATCCTACTGAGCCGAGGACGAAGACCGCAGAGCTCTGATCCAGCTATAGAACTTATGCAAAATAATCAGTGgtatgatatagtagcaggctatgtgaatcaactctgttgccttccatgtc Alignment from GeneWise TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTGGACAGAGGTG ctgaccatgtggttccatacctgaccattgcctgctctttgtcatttcagTTTGGGTTGTCACTGCTCCTAATCCTACTGAGCCGAGGACGAAGACCGCAGAGCTCTGATCCAGCTATAGAACTTATGCAAAATAATCAGTGGTATGATATAgtagcaggctatgtgaatcaactctgttgccttccatgtc #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGG-AAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataagctgaaatgttgtgctgggaattatttttcttctcttataggcAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCAGTTTCACCTGCCCCCACTGATGGACCCCAGCCCTCACGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGCAAGGGGCTGG-AGGATCTGATGGGGAGCCTGCTTCCGGGAGCCCAAAGGGTGGTAGCCCCAAGTCTCAGgttaatgactcgtggtaaaggggcctccctggttaccaaggtggttactc Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataagctgaaatgttgtgctgggaattatttttcttctcttataggcAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCAGTTTCACCTGCCCCCACTGATGGACCCCAGCCCTCACGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGCAAGGGGCTGGAGGATCTGATGGGGAGCCTGCTTCCGGGAGCCCAAAGGGTGGTAGCCCCAAGTCTCAGgttaatgactcgtggtaaaggggcctccctggttaccaaggtggttactc Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataagctgaaatgttgtgctgggaattatttttcttctcttatagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCAGTTTCACCTGCCCCCACTGATGGACCCCAGCCCTCACGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGCAAGGGGCTGGAGGATCTGATGGGGAGCCTGCTTCCGGGAGCCCAAAGGGTGGTAGCCCCAAGTCTCAGgttaatgactcgtggtaaaggggcctccctggttaccaaggtggttactc Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataagctgaaatgttgtgctgggaattatttttcttctcttatagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCAGTTTCACCTGCCCCCACTGATGGACCCCAGCCCTCACGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGCAAGGGGCTGGAGGATCTGATGGGGAGCCTGCTTCCGGGAGCCCAAAGGGTGGTAGCCCCAAGTCTCAGgttaatgactcgtggtaaaggggcctccctggttaccaaggtggttactc Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataagctgaaatgttgtgctgggaattatttttcttctcttatagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCAGTTTCACCTGCCCCCACTGATGGACCCCAGCCCTCACGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGCAAGGGGCTGGAGGATCTGATGGGGAGCCTGCTTCCGGGAGCCCAAAGGGTGGTAGCCCCAAGTCTCAGgttaatgactcgtggtaaaggggcctccctggttaccaaggtggttactc Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataagctgaaatgttgtgctgggaattatttttcttctcttatagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCAGTTTCACCTGCCCCCACTGATGGACCCCAGCCCTCACGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGCAAGGGGCTGGAGGATCTGATGGGGAGCCTGCTTCCGGGAGCCCAAAGGGTGGTAGCCCCAAGTCTCAGgttaatgactcgtggtaaaggggcctccctggttaccaaggtggttactc Alignment from Exonerate_coding2genome aaattataagctgaaatgttgtgctgggaattatttttcttctcttataggcagcagtgagcagcccctcccaccaggccctagctggggaccacgaccctccctaattggctctggagatgggcagccccgttctcttttacagtggcccccccctcggctcccaggaccacccccagtttcacctgcccccactgatggaccccagccctcacgactttcaggccctgctctccttaattcagagggacccagtgggaagtggagtttggggggtcagcaaggggctggaggatctgatggggagcctgcttccgggagcccaaagggtggtagccccaagtctcaggttaatgactcgtggtaaaggggcctccctggttaccaaggtggttactc Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataagctgaaatgttgtgctgggaattatttttcttctcttatagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCAGTTTCACCTGCCCCCACTGATGGACCCCAGCCCTCACGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGCAAGGGGCTGGAGGATCTGATGGGGAGCCTGCTTCCGGGAGCCCAAAGGGTGGTAGCCCCAAGTCTCAGgttaatgactcgtggtaaaggggcctccctggttaccaaggtggttactc #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTA-GTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gggcaggtgttccctttaccttagaccatttttcttcctgatttccttagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATTGCT---AATGAGGAGCGACTACGTAATCTCAC-TGAGAGAGACCCCGCCTGGAGGAGTGCCATCCTCGGCAACACCCCCTCTCTACTGGTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtatgtcaaatttgatgatgaatagcagcctaagatgtattgatgccccc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gggcaggtgttccctttaccttagaccatttttcttcctgatttccttagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATT---GCTAATGAGGAGCGACTACGTAATCTCACTGAGAGAGACCCCGCCTGGAGGAGTGCCATCCTCGGCAACACCCCCTCTCTACTGGTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtatgtcaaatttgatgatgaatagcagcctaagatgtattgatgccccc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gggcaggtgttccctttaccttagaccatttttcttcctgatttccttagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATT---GCTAATGAGGAGCGACTACGTAATCTCACTGAGAGAGACCCCGCCTGGAGGAGTGCCATCCTCGGCAACACCCCCTCTCTACTGGTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtatgtcaaatttgatgatgaatagcagcctaagatgtattgatgccccc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTA-GTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gggcaggtgttccctttaccttagaccatttttcttcctgatttccttagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAAT---TGCTAATGAGGAGCGACTACGTAATCTCAC-TGAGAGAGACCCCGCCTGGAGGAGTGCCATCCTCGGCAACACCCCCTCTCTACTGGTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtatgtcaaatttgatgatgaatagcagcctaagatgtattgatgccccc Alignment from Pairagon ------------------------------------------------AGGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTA-GTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG GGGCAGGTGTTCCCTTTACCTTAGACCATTTTTCTTCCTGATTTCCTTAGGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATT---GCTAATGAGGAGCGACTACGTAATCTCAC-TGAGAGAGACCCCGCCTGGAGGAGTGCCATCCTCGGCAACACCCCCTCTCTACTGGTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtatgtcaaatttgatgatgaatagcagcctaagatgtattgatgccccc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gggcaggtgttccctttaccttagaccatttttcttcctgatttccttagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATT---GCTAATGAGGAGCGACTACGTAATCTCACTGAGAGAGACCCCGCCTGGAGGAGTGCCATCCTCGGCAACACCCCCTCTCTACTGGTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtatgtcaaatttgatgatgaatagcagcctaagatgtattgatgccccc Alignment from Exonerate_coding2genome gggcaggtgttccctttaccttagaccatttttcttcctgatttccttagggccatttcacatcacctgatgagtatgaggaactagcagccctatatgacacaattgctaatgaggagcgactacgtaatctcactgagagagaccccgcctggaggagtgccatcctcggcaacaccccctctctactggtactccgccatgacatggatgatgcctctggtgagtacaagatcatcatgctcaacaggcgccacctcagtttccgagtcataaaggtatgtcaaatttgatgatgaatagcagcctaagatgtattgatgccccc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gggcaggtgttccctttaccttagaccatttttcttcctgatttccttagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATTGCT---AATGAGGAGCGACTACGTAATCTCACTGAGAGAGACCCCGCCTGGAGGAGTGCCATCCTCGGCAACACCCCCTCTCTACTGGTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtatgtcaaatttgatgatgaatagcagcctaagatgtattgatgccccc #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGT-CGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCCGCCGGG-TCTGGGCACAGCAGCACACAGCATGTCAGCCaggtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCCGCCGGGTCTGGGCACAGCAGCACACAGCATGTCAGCCaggtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCCGCCGGGTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCCGCCGGGTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCCGCCGGGTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCCGCCGGGTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Exonerate_coding2genome agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagcctgtggaccaggattggaattcaccattggttacatcatgctttggcttgtgtgtgttgggtccgccgggtctgggcacagcagcacacagcatgtcagccaggtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCCGCCGGGTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCAC-CTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg aggcaatgcacttacttcgtttacttgattgtctctcttttcttttaaaggaGCTGATGACAATAACCTCAATTTGCTTTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGTGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCACCAGACTACCTAAATGGACTTGTCCAGCCTCATTG-GGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGggtgagccagcttgggatcaagcacaagctaagggcggagcatagatatat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg aggcaatgcacttacttcgtttacttgattgtctctcttttcttttaaaggaGCTGATGACAATAACCTCAATTTGCTTTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGTGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCACCAGACTACCTAAATGGACTTGTCCAGCCTCATTGGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGggtgagccagcttgggatcaagcacaagctaagggcggagcatagatatat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcacttacttcgtttacttgattgtctctcttttcttttaaagGAGCTGATGACAATAACCTCAATTTGCTTTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGTGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCACCAGACTACCTAAATGGACTTGTCCAGCCTCATTGGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtgagccagcttgggatcaagcacaagctaagggcggagcatagatatat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCA-CCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcacttacttcgtttacttgattgtctctcttttcttttaaagGAGCTGATGACAATAACCTCAATTTGCTTTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGTGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCACCAGACTACCTAAATGGACTTGTCCAGCCTCATTG-GGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtgagccagcttgggatcaagcacaagctaagggcggagcatagatatat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCA-CCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcacttacttcgtttacttgattgtctctcttttcttttaaagGAGCTGATGACAATAACCTCAATTTGCTTTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGTGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCACCAGACTACCTAAATGGACTTGTCCAGCCTCATTG-GGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtgagccagcttgggatcaagcacaagctaagggcggagcatagatatat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcacttacttcgtttacttgattgtctctcttttcttttaaagGAGCTGATGACAATAACCTCAATTTGCTTTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGTGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCACCAGACTACCTAAATGGACTTGTCCAGCCTCATTGGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtgagccagcttgggatcaagcacaagctaagggcggagcatagatatat Alignment from Exonerate_coding2genome aggcaatgcacttacttcgtttacttgattgtctctcttttcttttaaaggagctgatgacaataacctcaatttgcttttctatcaacatttgacacgctcattgcaacacatgctttgtggtgatctggtcctgggctgctggggcaactatggtccaggagattgctttgtactggcaccagactacctaaatggacttgtccagcctcattgggttggcaatggtctcatcacctaccagccccatggcctcaagttccggggtgagccagcttgggatcaagcacaagctaagggcggagcatagatatat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcacttacttcgtttacttgattgtctctcttttcttttaaagGAGCTGATGACAATAACCTCAATTTGCTTTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGTGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCACCAGACTACCTAAATGGACTTGTCCAGCCTCATTGGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtgagccagcttgggatcaagcacaagctaagggcggagcatagatatat #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTAC-GCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgtctggacagactagctgtgtagaacctccctccctctctccccgtagacTCAGCTATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTCAATCCACTACTGGGTAGCGCAGTATTCATTATGTCCTACCACAAGCC-CCTCAAATACTGGGAGAGAGACTACaagtaagtcattaaggaagagcactctagtcccagagatacctttagggatt Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgtctggacagactagctgtgtagaacctccctccctctctccccgtagacTCAGCTATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTCAATCCACTACTGGGTAGCGCAGTATTCATTATGTCCTACCACAAGCCCCTCAAATACTGGGAGAGAGACTACaagtaagtcattaaggaagagcactctagtcccagagatacctttagggatt Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggacagactagctgtgtagaacctccctccctctctccccgtagACTCAGCTATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTCAATCCACTACTGGGTAGCGCAGTATTCATTATGTCCTACCACAAGCCCCTCAAATACTGGGAGAGAGACTACAAgtaagtcattaaggaagagcactctagtcccagagatacctttagggatt Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggacagactagctgtgtagaacctccctccctctctccccgtagACTCAGCTATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTCAATCCACTACTGGGTAGCGCAGTATTCATTATGTCCTACCACAAGCCCCTCAAATACTGGGAGAGAGACTACAAgtaagtcattaaggaagagcactctagtcccagagatacctttagggatt Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggacagactagctgtgtagaacctccctccctctctccccgtagACTCAGCTATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTCAATCCACTACTGGGTAGCGCAGTATTCATTATGTCCTACCACAAGCCCCTCAAATACTGGGAGAGAGACTACAAgtaagtcattaaggaagagcactctagtcccagagatacctttagggatt Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggacagactagctgtgtagaacctccctccctctctccccgtagACTCAGCTATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTCAATCCACTACTGGGTAGCGCAGTATTCATTATGTCCTACCACAAGCCCCTCAAATACTGGGAGAGAGACTACAAgtaagtcattaaggaagagcactctagtcccagagatacctttagggatt Alignment from Exonerate_coding2genome T Ctgtctggacagactagctgtgtagaacctccctccctctctccccgtagactcagctatgttgttcctccaagctttgctctcaggtctgttctctactccactcaatccactactgggtagcgcagtattcattatgtcctaccacaagcccctcaaatactgggagagagactacaagtaagtcattaaggaagagcactctagtcccagagatacctttagggatt Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggacagactagctgtgtagaacctccctccctctctccccgtagACTCAGCTATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTCAATCCACTACTGGGTAGCGCAGTATTCATTATGTCCTACCACAAGCCCCTCAAATACTGGGAGAGAGACTACAAgtaagtcattaaggaagagcactctagtcccagagatacctttagggatt #### Pcnxl3_ID1181_12 --> 1 - 0 Original Alignment gACACGTGGG----GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgttctaaaggcattttaggaaacatgcttgttgctgttgttgtaggACACGTGGTCTACGTAATGGAGA-TATTTTTGGTGTAGGGGTGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGCCTGGTTATTGCTTCTTGTCAGTATTTTCTGCTCAAAgtgagagctgggttctcagttttagaacagtaacctgcttcctatcctta Alignment from CESAR gACACGTGGGGTA---ATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgttctaaaggcattttaggaaacatgcttgttgctgttgttgtaggACACGTGGTCTACGTAATGGAGATATTTTTGGTGTAGGGGTGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGCCTGGTTATTGCTTCTTGTCAGTATTTTCTGCTCAAAgtgagagctgggttctcagttttagaacagtaacctgcttcctatcctta Alignment from Spaln_aa2Genome GACACGTGGGGTAATGGAG---AACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgttctaaaggcattttaggaaacatgcttgttgctgttgttgtagGACACGTGGTCTACGTAATGGAGATATTTTTGGTGTAGGGGTGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGCCTGGTTATTGCTTCTTGTCAGTATTTTCTGCTCAAAgtgagagctgggttctcagttttagaacagtaacctgcttcctatcctta Alignment from Spaln_nt2Genome GACACGTGGG----GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgttctaaaggcattttaggaaacatgcttgttgctgttgttgtagGACACGTGGTCTACGTAATGGAG-ATATTTTTGGTGTAGGGGTGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGAT---TATCTTTCAGTTTTGCCTGGTTATTGCTTCTTGTCAGTATTTTCTGCTCAAAgtgagagctgggttctcagttttagaacagtaacctgcttcctatcctta Alignment from Pairagon GACACGTGG----GGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgttctaaaggcattttaggaaacatgcttgttgctgttgttgtagGACACGTGGTCTACGTAATGGAG-ATATTTTTGGTGTAGGGGTGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGCCTGGTTATTGCTTCTTGTCAGTATTTTCTGCTCAAAgtgagagctgggttctcagttttagaacagtaacctgcttcctatcctta Alignment from Exonerate_protein2genome GACACGTGGGGTAATGGAG---AACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgttctaaaggcattttaggaaacatgcttgttgctgttgttgtagGACACGTGGTCTACGTAATGGAGATATTTTTGGTGTAGGGGTGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGCCTGGTTATTGCTTCTTGTCAGTATTTTCTGCTCAAAgtgagagctgggttctcagttttagaacagtaacctgcttcctatcctta Alignment from Exonerate_coding2genome GACACGTGGGGTAATGGAG---AACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgttctaaaggcattttaggaaacatgcttgttgctgttgttgtagGACACGTGGTCTACGTAATGGAGATATTTTTGGTGTAGGGGTGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGCCTGGTTATTGCTTCTTGTCAGTATTTTCTGCTCAAAgtgagagctgggttctcagttttagaacagtaacctgcttcctatcctta Alignment from GeneWise GACACGTGGGGTAATGGAG---AACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgttctaaaggcattttaggaaacatgcttgttgctgttgttgtagGACACGTGGTCTACGTAATGGAGATATTTTTGGTGTAGGGGTGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGCCTGGTTATTGCTTCTTGTCAGTATTTTCTGCTCAAAgtgagagctgggttctcagttttagaacagtaacctgcttcctatcctta #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATC-GTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa gcaaaattgagagaaagccaattaggacatttgtgtctttctctacacagacATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATACGTTACAT-TGCAGGCCGTGAAATGCTGAGGCTCAGCTCCAAGGAGAAACTCagtgagtggaaatgtggcaggctccttttaaaagtagaacatccttaaaag Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa gcaaaattgagagaaagccaattaggacatttgtgtctttctctacacagacATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATACGTTACATTGCAGGCCGTGAAATGCTGAGGCTCAGCTCCAAGGAGAAACTCagtgagtggaaatgtggcaggctccttttaaaagtagaacatccttaaaag Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaaaattgagagaaagccaattaggacatttgtgtctttctctacacagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATACGTTACATTGCAGGCCGTGAAATGCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagtggaaatgtggcaggctccttttaaaagtagaacatccttaaaag Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaaaattgagagaaagccaattaggacatttgtgtctttctctacacagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATACGTTACATTGCAGGCCGTGAAATGCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagtggaaatgtggcaggctccttttaaaagtagaacatccttaaaag Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGAT----------------CGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaaaattgagagaaagccaattaggacatttgtgtctttctctacacagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATACGTTACATTGCAGGCCGT----------------GAAATGCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagtggaaatgtggcaggctccttttaaaagtagaacatccttaaaag Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaaaattgagagaaagccaattaggacatttgtgtctttctctacacagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATACGTTACATTGCAGGCCGTGAAATGCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagtggaaatgtggcaggctccttttaaaagtagaacatccttaaaag Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaaaattgagagaaagccaattaggacatttgtgtctttctctacacagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATACGTTACATTGCAGGCCGTGAAATGCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagtggaaatgtggcaggctccttttaaaagtagaacatccttaaaag Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaaaattgagagaaagccaattaggacatttgtgtctttctctacacagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATACGTTACATTGCAGGCCGTGAAATGCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagtggaaatgtggcaggctccttttaaaagtagaacatccttaaaag #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAAT-TACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATCTATACCC-AGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATCTATACCCAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATCTATACCCAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Spaln_nt2Genome GAGTTGGAAGAGAAT-TACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATCTATACCC-AGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Pairagon GAGTTGGAAGAGAAT-TACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATCTATACCC-AGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATCTATACCCAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATCTATACCCAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATCTATACCCAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAG-CCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctcaatcttttgatcatagcttaattgtaaatatattttgcagGGCATAGCAGGCCTGCTGAAGCCCAGCAG-CTGTACAATGTTAGTTAGTTCCCTGTGGGACCGATCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTAGCTTGTTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAggtaaggcaaaagattgactcatagtcgaatgactgatggtgctgcaataa Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctcaatcttttgatcatagcttaattgtaaatatattttgcagGGCATAGCAGGCCTGCTGAAGCCCAGCAGCTGTACAATGTTAGTTAGTTCCCTGTGGGACCGATCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTAGCTTGTTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAggtaaggcaaaagattgactcatagtcgaatgactgatggtgctgcaataa Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagcttaattgtaaatatattttgcagGGCATAGCAGGCCTGCTGAAGCCCAGCAGCTGTACAATGTTAGTTAGTTCCCTGTGGGACCGATCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTAGCTTGTTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtaaggcaaaagattgactcatagtcgaatgactgatggtgctgcaataa Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagcttaattgtaaatatattttgcagGGCATAGCAGGCCTGCTGAAGCCCAGCAGCTGTACAATGTTAGTTAGTTCCCTGTGGGACCGATCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTAGCTTGTTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtaaggcaaaagattgactcatagtcgaatgactgatggtgctgcaataa Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagcttaattgtaaatatattttgcagGGCATAGCAGGCCTGCTGAAGCCCAGCAGCTGTACAATGTTAGTTAGTTCCCTGTGGGACCGATCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTAGCTTGTTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtaaggcaaaagattgactcatagtcgaatgactgatggtgctgcaataa Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagcttaattgtaaatatattttgcagGGCATAGCAGGCCTGCTGAAGCCCAGCAGCTGTACAATGTTAGTTAGTTCCCTGTGGGACCGATCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTAGCTTGTTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtaaggcaaaagattgactcatagtcgaatgactgatggtgctgcaataa Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagcttaattgtaaatatattttgcagGGCATAGCAGGCCTGCTGAAGCCCAGCAGCTGTACAATGTTAGTTAGTTCCCTGTGGGACCGATCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTAGCTTGTTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtaaggcaaaagattgactcatagtcgaatgactgatggtgctgcaataa Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctcaatcttttgatcatagcttaattgtaaatatattttgcagGGCATAGCAGGCCTGCTGAAGCCCAGCAGCTGTACAATGTTAGTTAGTTCCCTGTGGGACCGATCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTTGCAGCCACACTAGCTTGTTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCCTTGGTAACCTGCACAAAAGGGACTCCCTCTGAAACAGgtaaggcaaaagattgactcatagtcgaatgactgatggtgctgcaataa #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCT-CAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG actatctatggtgcgcttgctgaagcctccttctctgactgggactacagGTGAAGCCATCTTCCAAGATCGTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAAACAGAAGCTCCAGGCAGAGG-GCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACAAGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgagataggttgatgagggtgtaaatcagtctttcgattcatcttctga Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG actatctatggtgcgcttgctgaagcctccttctctgactgggactacagGTGAAGCCATCTTCCAAGATCGTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAAACAGAAGCTCCAGGCAGAGGGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACAAGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgagataggttgatgagggtgtaaatcagtctttacccactccctctct Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG actatctatggtgcgcttgctgaagcctccttctctgactgggactacagGTGAAGCCATCTTCCAAGATCGTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAAACAGAAGCTCCAGGCAGAGGGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACAAGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgagataggttgatgagggtgtaaatcagtctttcgattcatcttctga Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG actatctatggtgcgcttgctgaagcctccttctctgactgggactacagGTGAAGCCATCTTCCAAGATCGTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAAACAGAAGCTCCAGGCAGAGGGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACAAGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgagataggttgatgagggtgtaaatcagtctttcgattcatcttctga Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCT-CAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG actatctatggtgcgcttgctgaagcctccttctctgactgggactacagGTGAAGCCATCTTCCAAGATCGTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAAACAGAAGCTCCAGGCAG-AGGGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACAAGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgagataggttgatgagggtgtaaatcagtctttcgattcatcttctga Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG actatctatggtgcgcttgctgaagcctccttctctgactgggactacagGTGAAGCCATCTTCCAAGATCGTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAAACAGAAGCTCCAGGCAGAGGGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACAAGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgagataggttgatgagggtgtaaatcagtctttcgattcatcttctga Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG actatctatggtgcgcttgctgaagcctccttctctgactgggactacagGTGAAGCCATCTTCCAAGATCGTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAAACAGAAGCTCCAGGCAGAGGGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACAAGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgagataggttgatgagggtgtaaatcagtctttcgattcatcttctga Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG actatctatggtgcgcttgctgaagcctccttctctgactgggactacagGTGAAGCCATCTTCCAAGATCGTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAAACAGAAGCTCCAGGCAGAGGGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACAAGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgagataggttgatgagggtgtaaatcagtctttcgattcatcttctga #### Pcx_ID569_18 --> 0 - 0 Original Alignment GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCC-ATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttgatgagggtgtaaatcagtctttacccactccctctcttcccaagGTGCTAAAGGACCTCCCAAGAATTGAAGGACGGCCAGGAGCCTCCTTACCTCCCTTGAACCTGGAGGAGTTGGATAAGGGCCTGATTGATAGACATGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCTCATGT-CCCATAT------ACCCAATTCAAAGACTTCACAGCTACTTTCAGC---CTTGATAGCCTAAATACGAGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtcagtggtttctatatttatgtctacacttcccatgggcctatagtaag Alignment from CESAR GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttgatgagggtgtaaatcagtctttacccactccctctcttcccaagGTGCTAAAGGACCTCCCAAGAATTGAAGGACGGCCAGGAGCCTCCTTACCTCCCTTGAACCTGGAGGAGTTGGATAAGGGCCTGATTGATAGACATGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCTCATGTCCCA------TATACCCAATTCAAAGACTTCACAGCTACTTTCAGC---CTTGATAGCCTAAATACGAGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtcagtggtttctatatttatgtctacacttcccatgggcctatagtaag Alignment from Spaln_aa2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttgatgagggtgtaaatcagtctttacccactccctctcttcccaagGTGCTAAAGGACCTCCCAAGAATTGAAGGACGGCCAGGAGCCTCCTTACCTCCCTTGAACCTGGAGGAGTTGGATAAGGGCCTGATTGATAGACATGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCTCATGTCCCA------TATACCCAATTCAAAGACTTCACAGCTACTTTC---AGCCTTGATAGCCTAAATACGAGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtcagtggtttctatatttatgtctacacttcccatgggcctatagtaag Alignment from Spaln_nt2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGC-CATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttgatgagggtgtaaatcagtctttacccactccctctcttcccaagGTGCTAAAGGACCTCCCAAGAATTGAAGGACGGCCAGGAGCCTCCTTACCTCCCTTGAACCTGGAGGAGTTGGATAAGGGCCTGATTGATAGACATGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCTCATGTCCC-------ATATACCCAATTCAAAGACTTCACAGCTACTTTCAG---CCTTGATAGCCTAAATACGAGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtcagtggtttctatatttatgtctacacttcccatgggcctatagtaag Alignment from Pairagon -----------------------------------------------AAGGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAG--------CCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG AGGTTGATGAGGGTGTAAATCAGTCTTTACCCACTCCCTCTCTTCCCAAGGTGCTAAAGGACCTCCCAAGAATTGAAGGACGGCCAGGAGCCTCCTTACCTCCCTTGAACCTGGAGGAGTTGGATAAGGGCCTGATTGATAGACATGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCTCATGTCCCATATACC--------------CAATTCAAAGACTTCACAGCTACTTTCAG---CCTTGATAGCCTAAATACGAGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtcagtggtttctatatttatgtctacacttcccatgggcctatagtaag Alignment from Exonerate_protein2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttgatgagggtgtaaatcagtctttacccactccctctcttcccaagGTGCTAAAGGACCTCCCAAGAATTGAAGGACGGCCAGGAGCCTCCTTACCTCCCTTGAACCTGGAGGAGTTGGATAAGGGCCTGATTGATAGACATGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCTCATGTCCCA------TATACCCAATTCAAAGACTTCACAGCTACTTTCAGC---CTTGATAGCCTAAATACGAGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtcagtggtttctatatttatgtctacacttcccatgggcctatagtaag Alignment from Exonerate_coding2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttgatgagggtgtaaatcagtctttacccactccctctcttcccaagGTGCTAAAGGACCTCCCAAGAATTGAAGGACGGCCAGGAGCCTCCTTACCTCCCTTGAACCTGGAGGAGTTGGATAAGGGCCTGATTGATAGACATGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCTCATGTCCCA------TATACCCAATTCAAAGACTTCACAGCTACTTTCAGC---CTTGATAGCCTAAATACGAGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtcagtggtttctatatttatgtctacacttcccatgggcctatagtaag Alignment from GeneWise GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttgatgagggtgtaaatcagtctttacccactccctctcttcccaagGTGCTAAAGGACCTCCCAAGAATTGAAGGACGGCCAGGAGCCTCCTTACCTCCCTTGAACCTGGAGGAGTTGGATAAGGGCCTGATTGATAGACATGGTGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCTCATGTCCCA------TATACCCAATTCAAAGACTTCACAGCTACTTTCAGC---CTTGATAGCCTAAATACGAGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtcagtggtttctatatttatgtctacacttcccatgggcctatagtaag #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATC-AAAATAGGGACAGTAGTAAAG aaggagccctatccagccctctgtagtctgaggagacgtctttgccccagaTCAATTATCGCAGCTCCATTCCTTAGATATCATGACATCCAAAA-TGGAACAGTAGTAAAGgtaagtactgcatcttcttttgagaaacacattagctgttagcctataag Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaggagccctatccagccctctgtagtctgaggagacgtctttgccccagaTCAATTATCGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagtactgcatcttcttttgagaaacacattagctgttagcctataag Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaggagccctatccagccctctgtagtctgaggagacgtctttgccccagATCAATTATCGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagtactgcatcttcttttgagaaacacattagctgttagcctataag Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaggagccctatccagccctctgtagtctgaggagacgtctttgccccagATCAATTATCGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagtactgcatcttcttttgagaaacacattagctgttagcctataag Alignment from Pairagon ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaggagccctatccagccctctgtagtctgaggagacgtctttgccccagATCAATTATCGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagtactgcatcttcttttgagaaacacattagctgttagcctataag Alignment from Exonerate_protein2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaggagccctatccagccctctgtagtctgaggagacgtctttgccccagATCAATTATCGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagtactgcatcttcttttgagaaacacattagctgttagcctataag Alignment from Exonerate_coding2genome aaggagccctatccagccctctgtagtctgaggagacgtctttgccccagatcaattatcgcagctccattccttagatatcatgacatccaaaatggaacagtagtaaaggtaagtactgcatcttcttttgagaaacacattagctgttagcctataag Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaggagccctatccagccctctgtagtctgaggagacgtctttgccccagATCAATTATCGCAGCTCCATTCCTTAGATATCATGACATCCAAAATGGAACAGTAGTAAAGgtaagtactgcatcttcttttgagaaacacattagctgttagcctataag #### Pdcd11_ID10119_13 --> 0 - 0 Original Alignment GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGA-CTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggacctgccactgacttgtcactcttatctttgtagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCAAAGGAAAAAATGCTCCTCTCCTTTAGACTTGTTGA-TGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCACATTGGCCAGgtacgtaccctatgattttgactgatggtaacaccatcacagcatctgag Alignment from CESAR GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggacctgccactgacttgtcactcttatctttgtagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCAAAGGAAAAAATGCTCCTCTCCTTTAGACTTGTTGATGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCACATTGGCCAGgtacgtaccctatgattttgactgatggtaacaccatcacagcatctgag Alignment from Spaln_aa2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggacctgccactgacttgtcactcttatctttgtagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCAAAGGAAAAAATGCTCCTCTCCTTTAGACTTGTTGATGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCACATTGGCCAGgtacgtaccctatgattttgactgatggtaacaccatcacagcatctgag Alignment from Spaln_nt2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggacctgccactgacttgtcactcttatctttgtagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCAAAGGAAAAAATGCTCCTCTCCTTTAGACTTGTTGATGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCACATTGGCCAGgtacgtaccctatgattttgactgatggtaacaccatcacagcatctgag Alignment from Pairagon GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGAC-TGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggacctgccactgacttgtcactcttatctttgtagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCAAAGGAAAAAATGCTCCTCTCCTTTAGACTTGTTGA-TGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCACATTGGCCAGgtacgtaccctatgattttgactgatggtaacaccatcacagcatctgag Alignment from Exonerate_protein2genome AGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acAAATTGCCTTAAGGACCTGCCACTGACTTGTCACTCTTATCTTTGTAGGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCAAAGGAAAAAATGCTCCTCTCCTTTAGACTTGTTGATGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCACATTGGCCAGgtacgtaccctatgattttgactgatggtaacaccatcacagcatctgag Alignment from Exonerate_coding2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggacctgccactgacttgtcactcttatctttgtagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCAAAGGAAAAAATGCTCCTCTCCTTTAGACTTGTTGATGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCACATTGGCCAGgtacgtaccctatgattttgactgatggtaacaccatcacagcatctgag Alignment from GeneWise GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggacctgccactgacttgtcactcttatctttgtagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAGCCTTCAAAGGAAAAAATGCTCCTCTCCTTTAGACTTGTTGATGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCACATTGGCCAGgtacgtaccctatgattttgactgatggtaacaccatcacagcatctgag #### Pdcd11_ID10126_20 --> 1 - 2 Original Alignment gTTTCTCCCAATAAGT-CACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAag tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagaTTTCTCCCAATTAGCCCACCCCA-ATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAaggtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from CESAR gTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAag tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagaTTTCTCCCAATTAGCCCACCCCAATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAaggtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Spaln_aa2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCCACCCCAATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Spaln_nt2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCCACCCCAATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Pairagon GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCCACCCCAATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Exonerate_protein2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCCACCCCAATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Exonerate_coding2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCCACCCCAATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from GeneWise GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCCACCCCAATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAA-CAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctaaaacaccctatttgccctataaatttgctatttctgtagcATCAACCCCACAAAGAACCTGATAGAGTTATCCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCAGAACCAGAACCAAGAGG-AGGTAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGGCGGGATGAGAAGGAGGAACCACAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagccaggcagtatgtattgtatctttttatgggacacatttgctgct Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctaaaacaccctatttgccctataaatttgctatttctgtagcATCAACCCCACAAAGAACCTGATAGAGTTATCCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCAGAACCAGAACCAAGAGGAGGTAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGGCGGGATGAGAAGGAGGAACCACAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagccaggcagtatgtattgtatctttttatgggacacatttgctgct Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctaaaacaccctatttgccctataaatttgctatttctgtagCATCAACCCCACAAAGAACCTGATAGAGTTATCCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCAGAACCAGAACCAAGAGGAGGTAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGGCGGGATGAGAAGGAGGAACCACAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagccaggcagtatgtattgtatctttttatgggacacatttgctgct Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctaaaacaccctatttgccctataaatttgctatttctgtagCATCAACCCCACAAAGAACCTGATAGAGTTATCCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCAGAACCAGAACCAAGAGGAGGTAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGGCGGGATGAGAAGGAGGAACCACAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagccaggcagtatgtattgtatctttttatgggacacatttgctgct Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAA-CAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctaaaacaccctatttgccctataaatttgctatttctgtagCATCAACCCCACAAAGAACCTGATAGAGTTATCCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCAGAACCAGAACCAAGAGGAG-GTAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGGCGGGATGAGAAGGAGGAACCACAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagccaggcagtatgtattgtatctttttatgggacacatttgctgct Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctaaaacaccctatttgccctataaatttgctatttctgtagCATCAACCCCACAAAGAACCTGATAGAGTTATCCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCAGAACCAGAACCAAGAGGAGGTAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGGCGGGATGAGAAGGAGGAACCACAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagccaggcagtatgtattgtatctttttatgggacacatttgctgct Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctaaaacaccctatttgccctataaatttgctatttctgtagCATCAACCCCACAAAGAACCTGATAGAGTTATCCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCAGAACCAGAACCAAGAGGAGGTAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGGCGGGATGAGAAGGAGGAACCACAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagccaggcagtatgtattgtatctttttatgggacacatttgctgct Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctaaaacaccctatttgccctataaatttgctatttctgtagCATCAACCCCACAAAGAACCTGATAGAGTTATCCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCAGAACCAGAACCAAGAGGAGGTAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGGCGGGATGAGAAGGAGGAACCACAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagccaggcagtatgtattgtatctttttatgggacacatttgctgct #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAG-AAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG atactctgtgttttaggggagctgccccctttcccccttaccaccagcagGGTTTAGTAAACAAGAGGCCG---CAGGTCTG-GGCTGCAGAGGAAGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTACCACCCAGGgttggttttatgggagttactatctttagagcataccttgcacatgaagt Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG atactctgtgttttaggggagctgccccctttcccccttaccaccagcagGGTTTAGTAAACAAGAGGCCG---CAGGTCTGGGCTGCAGAGGAAGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTACCACCCAGGgttggttttatgggagttactatctttagagcataccttgcacatgaagt Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG atactctgtgttttaggggagctgccccctttcccccttaccaccagcagGGTTTAGTAAACAAGAGGCCG---CAGGTCTGGGCTGCAGAGGAAGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTACCACCCAGGgttggttttatgggagttactatctttagagcataccttgcacatgaagt Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAG------TGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG atactctgtgttttaggggagctgccccctttcccccttaccaccagcagGGTTTAGTAAACAAGAGGCCGCAG--GTCTGG-GCTGCAGAGGAAGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTACCACCCAGGgttggttttatgggagttactatctttagagcataccttgcacatgaagt Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG atactctgtgttttaggggagctgccccctttcccccttaccaccagcagGGTTTAGTAAACAAGAGGCCGCAG--GTCTGG-GCTGCAGAGGAAGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTACCACCCAGGgttggttttatgggagttactatctttagagcataccttgcacatgaagt Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG atactctgtgttttaggggagctgccccctttcccccttaccaccagcagGGTTTAGTAAACAAGAGGCCG---CAGGTCTGGGCTGCAGAGGAAGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTACCACCCAGGgttggttttatgggagttactatctttagagcataccttgcacatgaagt Alignment from Exonerate_coding2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG atactctgtgttttaggggagctgccccctttcccccttaccaccagcagGGTTTAGTAAACAAGAGGCCG---CAGGTCTGGGCTGCAGAGGAAGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTACCACCCAGGgttggttttatgggagttactatctttagagcataccttgcacatgaagt Alignment from GeneWise ---GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG atactctgtgttttaggggagctgccccctttcccccttaccaccagCAGGGTTTAGTAAACAAGAGGCCGCAG---GTCTGGGCTGCAGAGGAAGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTACCACCCAGGgttggttttatgggagttactatctttagagcataccttgcacatgaagt #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTC-CTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacccatcctccctcctccctctagGGGAAGAAGACAAAGTCTACAGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCCTCTGGG-CGTGGGACTTGATTCTCTAACCCCATCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaatcatctctttagccagtatgactactaggactacttagagccaaa Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacccatcctccctcctccctctagGGGAAGAAGACAAAGTCTACAGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCCTCTGGGCGTGGGACTTGATTCTCTAACCCCATCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaatcatctctttagccagtatgactactaggactacttagagccaaa Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacccatcctccctcctccctctagGGGAAGAAGACAAAGTCTACAGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCCTCTGGGCGTGGGACTTGATTCTCTAACCCCATCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaatcatctctttagccagtatgactactaggactacttagagccaaa Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacccatcctccctcctccctctagGGGAAGAAGACAAAGTCTACAGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCCTCTGGGCGTGGGACTTGATTCTCTAACCCCATCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaatcatctctttagccagtatgactactaggactacttagagccaaa Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacccatcctccctcctccctctagGGGAAGAAGACAAAGTCTACAGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCCTCTGGGCGTGGGACTTGATTCTCTAACCCCATCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaatcatctctttagccagtatgactactaggactacttagagccaaa Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacccatcctccctcctccctctagGGGAAGAAGACAAAGTCTACAGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCCTCTGGGCGTGGGACTTGATTCTCTAACCCCATCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaatcatctctttagccagtatgactactaggactacttagagccaaa Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacccatcctccctcctccctctagGGGAAGAAGACAAAGTCTACAGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCCTCTGGGCGTGGGACTTGATTCTCTAACCCCATCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaatcatctctttagccagtatgactactaggactacttagagccaaa Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacccatcctccctcctccctctagGGGAAGAAGACAAAGTCTACAGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCCTCTGGGCGTGGGACTTGATTCTCTAACCCCATCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaatcatctctttagccagtatgactactaggactacttagagccaaa #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGG-CGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag tcttatcttattcaaaggggttggagctttcctcgttctcctgagcacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAAGTGAAGAAAGAGCTGTCACGCATTGAAAAGGCACTAATGGACCCTTGGCCGACAACCAG-GTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACGACAGAAATTGAACGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCGCATTCcggtgagaggtccgggtcttctgcagttcaaatggatgatcagttttaaacc Alignment from CESAR AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag tcttatcttattcaaaggggttggagctttcctcgttctcctgagcacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAAGTGAAGAAAGAGCTGTCACGCATTGAAAAGGCACTAATGGACCCTTGGCCGACAACCAGGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACGACAGAAATTGAACGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCGCATTCcggtgagaggtccgggtcttctgcagttcaaatggatgatcagttttaaacc Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG tcttatcttattcaaaggggttggagctttcctcgttctcctgagcacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAAGTGAAGAAAGAGCTGTCACGCATTGAAAAGGCACTAATGGACCCTTGGCCGACAACCAGGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACGACAGAAATTGAACGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtgagaggtccgggtcttctgcagttcaaatggatgatcagttttaaacc Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG tcttatcttattcaaaggggttggagctttcctcgttctcctgagcacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAAGTGAAGAAAGAGCTGTCACGCATTGAAAAGGCACTAATGGACCCTTGGCCGACAACCAGGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACGACAGAAATTGAACGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtgagaggtccgggtcttctgcagttcaaatggatgatcagttttaaacc Alignment from Pairagon AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCC-TGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG tcttatcttattcaaaggggttggagctttcctcgttctcctgagcacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAAGTGAAGAAAGAGCTGTCACGCATTGAAAAGGCACTAATGGACCCTTGGCCGACAACCAG-GTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACGACAGAAATTGAACGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtgagaggtccgggtcttctgcagttcaaatggatgatcagttttaaacc Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG tcttatcttattcaaaggggttggagctttcctcgttctcctgagcacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAAGTGAAGAAAGAGCTGTCACGCATTGAAAAGGCACTAATGGACCCTTGGCCGACAACCAGGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACGACAGAAATTGAACGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtgagaggtccgggtcttctgcagttcaaatggatgatcagttttaaacc Alignment from Exonerate_coding2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG tcttatcttattcaaaggggttggagctttcctcgttctcctgagcacagAAGAAGAAAGGTAAAAAAGAAAGGGAGCTGGAGAAGCAAAAAGTGAAGAAAGAGCTGTCACGCATTGAAAAGGCACTAATGGACCCTTGGCCGACAACCAGGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACGACAGAAATTGAACGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtgagaggtccgggtcttctgcagttcaaatggatgatcagttttaaacc Alignment from GeneWise GGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG tcttatcttattcaaaggggttggagctttcctcgttctcctgagcacagaagaagaaaggtaaaaaagaaagGGAGCTGGAGAAGCAAAAAGTGAAGAAAGAGCTGTCACGCATTGAAAAGGCACTAATGGACCCTTGGCCGACAACCAGGTCTGCTGATGAATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACGACAGAAATTGAACGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtgagaggtccgggtcttctgcagttcaaatggatgatcagttttaaacc #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTC-TTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG atgtgaatggcttccatgtaggtagacttcttgctcgtttttaaatgaaggGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATCTGGAAAACATGTATGGCTCCCAGGCATCACTGACAAATGTTCTTTG-TCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAAATACAAGgtaccatgttggccgcatcatcaatgcagtttatcctgcatccttgcctt Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG atgtgaatggcttccatgtaggtagacttcttgctcgtttttaaatgaaggGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATCTGGAAAACATGTATGGCTCCCAGGCATCACTGACAAATGTTCTTTGTCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAAATACAAGgtaccatgttggccgcatcatcaatgcagtttatcctgcatccttgcctt Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG atgtgaatggcttccatgtaggtagacttcttgctcgtttttaaatgaagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATCTGGAAAACATGTATGGCTCCCAGGCATCACTGACAAATGTTCTTTGTCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAAATACAAGgtaccatgttggccgcatcatcaatgcagtttatcctgcatccttgcctt Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG atgtgaatggcttccatgtaggtagacttcttgctcgtttttaaatgaagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATCTGGAAAACATGTATGGCTCCCAGGCATCACTGACAAATGTTCTTTGTCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAAATACAAGgtaccatgttggccgcatcatcaatgcagtttatcctgcatccttgcctt Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG atgtgaatggcttccatgtaggtagacttcttgctcgtttttaaatgaagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATCTGGAAAACATGTATGGCTCCCAGGCATCACTGACAAATGTTCTTTGTCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAAATACAAGgtaccatgttggccgcatcatcaatgcagtttatcctgcatccttgcctt Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG atgtgaatggcttccatgtaggtagacttcttgctcgtttttaaatgaagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATCTGGAAAACATGTATGGCTCCCAGGCATCACTGACAAATGTTCTTTGTCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAAATACAAGgtaccatgttggccgcatcatcaatgcagtttatcctgcatccttgcctt Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG atgtgaatggcttccatgtaggtagacttcttgctcgtttttaaatgaagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATCTGGAAAACATGTATGGCTCCCAGGCATCACTGACAAATGTTCTTTGTCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAAATACAAGgtaccatgttggccgcatcatcaatgcagtttatcctgcatccttgcctt Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG atgtgaatggcttccatgtaggtagacttcttgctcgtttttaaatgaagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATCTGGAAAACATGTATGGCTCCCAGGCATCACTGACAAATGTTCTTTGTCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAAATACAAGgtaccatgttggccgcatcatcaatgcagtttatcctgcatccttgcctt #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGCATGATCTTAG-TTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGCATGATCTTAGTTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGCATGATCTTAGTTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGCATGATCTTAG-TTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGCATGATCTTAG-TTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGCATGATCTTAGTTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGCATGATCTTAGTTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGCATGATCTTAGTTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTC-GCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccattataacccattcttttacttcctacagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTAC-GCTGAAGCACACTAGTTATTTGTACAGTTTGGAGTCCCGGCGGAGTCAAgtatgtgaatactacaagaagtctgccatttccacaactacacgtcatta Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccattataacccattcttttacttcctacagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTACGCTGAAGCACACTAGTTATTTGTACAGTTTGGAGTCCCGGCGGAGTCAAgtatgtgaatactacaagaagtctgccatttccacaactacacgtcatta Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccattataacccattcttttacttcctacagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTACGCTGAAGCACACTAGTTATTTGTACAGTTTGGAGTCCCGGCGGAGTCAAgtatgtgaatactacaagaagtctgccatttccacaactacacgtcatta Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccattataacccattcttttacttcctacagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTACGCTGAAGCACACTAGTTATTTGTACAGTTTGGAGTCCCGGCGGAGTCAAgtatgtgaatactacaagaagtctgccatttccacaactacacgtcatta Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTG-TCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccattataacccattcttttacttcctacagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTAC-GCTGAAGCACACTAGTTATTTGTACAGTTTGGAGTCCCGGCGGAGTCAAgtatgtgaatactacaagaagtctgccatttccacaactacacgtcatta Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccattataacccattcttttacttcctacagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTACGCTGAAGCACACTAGTTATTTGTACAGTTTGGAGTCCCGGCGGAGTCAAgtatgtgaatactacaagaagtctgccatttccacaactacacgtcatta Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccattataacccattcttttacttcctacagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTACGCTGAAGCACACTAGTTATTTGTACAGTTTGGAGTCCCGGCGGAGTCAAgtatgtgaatactacaagaagtctgccatttccacaactacacgtcatta Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccattataacccattcttttacttcctacagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTACGCTGAAGCACACTAGTTATTTGTACAGTTTGGAGTCCCGGCGGAGTCAAgtatgtgaatactacaagaagtctgccatttccacaactacacgtcatta #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAA-GGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGCGGGT-CCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGCGGGTCCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGCGGGTCCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGCGGGTCCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGCGGGTCCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGCGGGTCCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGCGGGTCCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGCGGGTCCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag #### Pga5_ID2971_7 --> 1 - 0 Original Alignment cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATT-ATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgtggctccccctgcctcactcctccccagcAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTCATGGATACAG-GGCTTCATTGCTGACCAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgtaagtgtttaaaaggttaaggtaatgggcagcccactctaggcctccag Alignment from CESAR cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATT-ATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgtggctccccctgcctcactcctccccagcAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTCATGGATACAG-GGCTTCATTGCTGACCAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgtaagtgtttaaaaggttaaggtaatgggcagcccactctaggcctccag Alignment from Spaln_aa2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgtggctccccctgcctcactcctccccagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTCATGGATACAGGGCTTCATTGCTGACCAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgtaagtgtttaaaaggttaaggtaatgggcagcccactctaggcctccag Alignment from Spaln_nt2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgtggctccccctgcctcactcctccccagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTCATGGATACAGGGCTTCATTGCTGACCAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgtaagtgtttaaaaggttaaggtaatgggcagcccactctaggcctccag Alignment from Pairagon CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATT-ATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgtggctccccctgcctcactcctccccagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTCATGGATACAGGG-CTTCATTGCTGACCAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgtaagtgtttaaaaggttaaggtaatgggcagcccactctaggcctccag Alignment from Exonerate_protein2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgtggctccccctgcctcactcctccccagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTCATGGATACAGGGCTTCATTGCTGACCAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgtaagtgtttaaaaggttaaggtaatgggcagcccactctaggcctccag Alignment from Exonerate_coding2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATT-ATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgtggctccccctgcctcactcctccccagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTCATGGATACAGGGCTTCAT-TGCTGACCAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgtaagtgtttaaaaggttaaggtaatgggcagcccactctaggcctccag Alignment from GeneWise CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgtggctccccctgcctcactcctccccagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTCATGGATACAGGGCTTCATTGCTGACCAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgtaagtgtttaaaaggttaaggtaatgggcagcccactctaggcctccag #### Pga5_ID2972_6 --> 1 - 2 Original Alignment cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTG-GATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacactttgaagtaccctggagatttccctccctgcaccccatacagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTACGACCCCT-CTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATaggtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from CESAR cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacactttgaagtaccctggagatttccctccctgcaccccatacagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTACGACCCCTCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATaggtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Spaln_aa2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTACGACCCCTCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Spaln_nt2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTACGACCCCTCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Pairagon CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTACGACCCCTCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Exonerate_protein2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTACGACCCCTCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Exonerate_coding2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTACGACCCCTCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from GeneWise CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTACGACCCCTCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGC-CCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtagaaaaaccagcatatttgacatgtccctacccatctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGA-CCAGGGCAGCAGCCACCGTGGGAGCATGgtatccttccaacccagggagtcagcagctgagggagccagggctgcaat Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtagaaaaaccagcatatttgacatgtccctacccatctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGACCAGGGCAGCAGCCACCGTGGGAGCATGgtatccttccaacccagggagtcagcagctgagggagccagggctgcaat Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtagaaaaaccagcatatttgacatgtccctacccatctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGACCAGGGCAGCAGCCACCGTGGGAGCATGgtatccttccaacccagggagtcagcagctgagggagccagggctgcaat Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtagaaaaaccagcatatttgacatgtccctacccatctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGACCAGGGCAGCAGCCACCGTGGGAGCATGgtatccttccaacccagggagtcagcagctgagggagccagggctgcaat Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtagaaaaaccagcatatttgacatgtccctacccatctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGACCAGGGCAGCAGCCACCGTGGGAGCATGgtatccttccaacccagggagtcagcagctgagggagccagggctgcaat Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtagaaaaaccagcatatttgacatgtccctacccatctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGACCAGGGCAGCAGCCACCGTGGGAGCATGgtatccttccaacccagggagtcagcagctgagggagccagggctgcaat Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtagaaaaaccagcatatttgacatgtccctacccatctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGACCAGGGCAGCAGCCACCGTGGGAGCATGgtatccttccaacccagggagtcagcagctgagggagccagggctgcaat Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtagaaaaaccagcatatttgacatgtccctacccatctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGACCAGGGCAGCAGCCACCGTGGGAGCATGgtatccttccaacccagggagtcagcagctgagggagccagggctgcaat #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCG-CTGGCAGAT------GGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACag aattacagtgccagtatgtttagagtgcactgtcttttctggtttcacagATCACCGAGACACTCTCACCTGAAGTTGGCTGTCCATTGCGTGACCCACCTGG-AGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTCTCAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATaggtagggagttctcttttatagcagtcctaaaataaaaacctgggcttatc Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACag aattacagtgccagtatgtttagagtgcactgtcttttctggtttcacagATCACCGAGACACTCTCACCTGAAGTTGGCTGTCCATTGCGTGACCCACCTGGAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTCTCAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATaggtagggagttctcttttatagcagtcctaaaataaaaacctgggcttatg Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG aattacagtgccagtatgtttagagtgcactgtcttttctggtttcacagATCACCGAGACACTCTCACCTGAAGTTGGCTGTCCATTGCGTGACCCACCTGGAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTCTCAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGgtagggagttctcttttatagcagtcctaaaataaaaacctgggcttatc Alignment from Spaln_nt2Genome AACAATGAGATGCTCTCCCCTGAAGTTGG---TCCAGTACGGGACCCGC-TGG-----CAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG aattacagtgccagtatgtttagagtgcactgtcttttctggtttcacagATCACCGAGACACTCTCACCTGAAGTTGGCTGTCCATTGCGTGACCCACCTGGAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTCTCAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGgtagggagttctcttttatagcagtcctaaaataaaaacctgggcttatc Alignment from Pairagon AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTG-------------------------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATC---CTGATCCTGATGGCTCTCA-------------------------------------------------------- aattacagtgccagtatgtttagagtgcactgtcttttctggtttcacagATCACCGAGACACTCTCACCTGAAGTTG----------------GCTGTCCATTGCGTGACCCACCTGGAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTCTCAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGGTAGGGAGTTCTCTTTTATAGCAGTCCTAAAATAAAAACCTGGGCTTATC Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG aattacagtgccagtatgtttagagtgcactgtcttttctggtttcacagATCACCGAGACACTCTCACCTGAAGTTGGCTGTCCATTGCGTGACCCACCTGGAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTCTCAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGgtagggagttctcttttatagcagtcctaaaataaaaacctgggcttatc Alignment from Exonerate_coding2genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG aattacagtgccagtatgtttagagtgcactgtcttttctggtttcacagATCACCGAGACACTCTCACCTGAAGTTGGCTGTCCATTGCGTGACCCACCTGGAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTCTCAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGgtagggagttctcttttatagcagtcctaaaataaaaacctgggcttatc Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG aattacagtgccagtatgtttagagtgcactgtcttttctggtttcacagATCACCGAGACACTCTCACCTGAAGTTGGCTGTCCATTGCGTGACCCACCTGGAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTCTCAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGgtagggagttctcttttatagcagtcctaaaataaaaacctgggcttatc #### Pitpnm1_ID316_13 --> 1 - 1 Original Alignment cCTCCAGGTAGCC-TCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGg cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagcCTGCAGTTAGCACGCAACAGCAA-GTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGggtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from CESAR cCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGg cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagcCTGCAGTTAGCACGCAACAGCAAGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGggtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Spaln_aa2Genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCACGCAACAGCAAGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Spaln_nt2Genome CCTCCAGGTAGC-CTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCACGCAACAGC-AAGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Pairagon CCTCCAGGTAGC-CTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCACGCAACAGC-AAGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Exonerate_protein2genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCACGCAACAGCAAGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Exonerate_coding2genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCACGCAACAGCAAGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from GeneWise CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCACGCAACAGCAAGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTAT-TCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agaacacagttgaagctgcgttgtactccttttctttctctttgcttcagttCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATCTCACTCT-CTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgttagtacaccccaggattggctcaacactgagcttagacaacaggaact Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agaacacagttgaagctgcgttgtactccttttctttctctttgcttcagttCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATCTCACTCTCTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgttagtacaccccaggattggctcaacactgagcttagacaacaggaact Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agaacacagttgaagctgcgttgtactccttttctttctctttgcttcagTTCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATCTCACTCTCTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgttagtacaccccaggattggctcaacactgagcttagacaacaggaact Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agaacacagttgaagctgcgttgtactccttttctttctctttgcttcagTTCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATCTCACTCTCTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgttagtacaccccaggattggctcaacactgagcttagacaacaggaact Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTAT-TCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agaacacagttgaagctgcgttgtactccttttctttctctttgcttcagTTCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATCTCACTCT-CTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgttagtacaccccaggattggctcaacactgagcttagacaacaggaact Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agaacacagttgaagctgcgttgtactccttttctttctctttgcttcagTTCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATCTCACTCTCTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgttagtacaccccaggattggctcaacactgagcttagacaacaggaact Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agaacacagttgaagctgcgttgtactccttttctttctctttgcttcagTTCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATCTCACTCTCTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgttagtacaccccaggattggctcaacactgagcttagacaacaggaact Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agaacacagttgaagctgcgttgtactccttttctttctctttgcttcagTTCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATCTCACTCTCTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgttagtacaccccaggattggctcaacactgagcttagacaacaggaact #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGT-GCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat aggcctaccccttgagagtttactccacgttgttgtgtgttttgttttagAAATTCAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTCGCCAAGG-CATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCatgtaagtacagctgtagcattgtagaccacttggttttgagatcccagaat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat aggcctaccccttgagagtttactccacgttgttgtgtgttttgttttagAAATTCAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTCGCCAAGGCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCatgtaagtacagctgtagcattgtagaccacttggttttgagatcccagaat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT aggcctaccccttgagagtttactccacgttgttgtgtgttttgttttagAAATTCAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTCGCCAAGGCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtaagtacagctgtagcattgtagaccacttggttttgagatcccagaat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT aggcctaccccttgagagtttactccacgttgttgtgtgttttgttttagAAATTCAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTCGCCAAGGCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtaagtacagctgtagcattgtagaccacttggttttgagatcccagaat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT aggcctaccccttgagagtttactccacgttgttgtgtgttttgttttagAAATTCAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTCGCCAAGGCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtaagtacagctgtagcattgtagaccacttggttttgagatcccagaat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT aggcctaccccttgagagtttactccacgttgttgtgtgttttgttttagAAATTCAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTCGCCAAGGCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtaagtacagctgtagcattgtagaccacttggttttgagatcccagaat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT aggcctaccccttgagagtttactccacgttgttgtgtgttttgttttagAAATTCAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTCGCCAAGGCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtaagtacagctgtagcattgtagaccacttggttttgagatcccagaat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT aggcctaccccttgagagtttactccacgttgttgtgtgttttgttttagAAATTCAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTCGCCAAGGCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtaagtacagctgtagcattgtagaccacttggttttgagatcccagaat #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTG-GCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcggacttccaacctccttgcatttttccataatagTTGGGAGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGAC-ACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCAAAAgtgggtccttgtagggttgcatatacacactaataggggaactggtcagc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcggacttccaacctccttgcatttttccataatagTTGGGAGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCAAAAgtgggtccttgtagggttgcatatacacactaataggggaactggtcagc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcggacttccaacctccttgcatttttccataatagTTGGGAGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCAAAAgtgggtccttgtagggttgcatatacacactaataggggaactggtcagc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcggacttccaacctccttgcatttttccataatagTTGGGAGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCAAAAgtgggtccttgtagggttgcatatacacactaataggggaactggtcagc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTG-GCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcggacttccaacctccttgcatttttccataatagTTGGGAGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGAC-ACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCAAAAgtgggtccttgtagggttgcatatacacactaataggggaactggtcagc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcggacttccaacctccttgcatttttccataatagTTGGGAGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCAAAAgtgggtccttgtagggttgcatatacacactaataggggaactggtcagc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcggacttccaacctccttgcatttttccataatagTTGGGAGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCAAAAgtgggtccttgtagggttgcatatacacactaataggggaactggtcagc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcggacttccaacctccttgcatttttccataatagTTGGGAGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGCGCAGGACACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCAAAAgtgggtccttgtagggttgcatatacacactaataggggaactggtcagc #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCG-GTAAACTCCATCAGACGG actccgagaagcaggccaatacttaagcaactgtctttcttgatccacagaGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAA-TTCCAACAGACAGgtaaaggggacttatctctttgtcaccaacagaggccatcccctgctaat Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG actccgagaagcaggccaatacttaagcaactgtctttcttgatccacagaGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaggggacttatctctttgtcaccaacagaggccatcccctgctaat Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG actccgagaagcaggccaatacttaagcaactgtctttcttgatccacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaggggacttatctctttgtcaccaacagaggccatcccctgctaat Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG actccgagaagcaggccaatacttaagcaactgtctttcttgatccacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaggggacttatctctttgtcaccaacagaggccatcccctgctaat Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG actccgagaagcaggccaatacttaagcaactgtctttcttgatccacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaggggacttatctctttgtcaccaacagaggccatcccctgctaat Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG actccgagaagcaggccaatacttaagcaactgtctttcttgatccacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaggggacttatctctttgtcaccaacagaggccatcccctgctaat Alignment from Exonerate_coding2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG actccgagaagcaggccaatacttaagcaactgtctttcttgatccacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaggggacttatctctttgtcaccaacagaggccatcccctgctaat Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG actccgagaagcaggccaatacttaagcaactgtctttcttgatccacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaggggacttatctctttgtcaccaacagaggccatcccctgctaat #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACAC-ACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag GACAGgtaaaggatcagtgggggatggtgtcttctcttgtctcttttaagGCGCATCAATGGGTCAAGGAGGTTGTACTGGACACACACCACAATCC-ATTTAAGAGGCTAAGGGAACTGAAAGAAaggtaagtataagtgggaattcggtatgactctttacacgcaatctggctca Alignment from CESAR GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag GACAGgtaggagatcagtgggggatggtgtcttctcttgtctcttttaagGCGCATCAATGGGTCAAGGAGGTTGTACTGGACACACACCACAATCCATTTAAGAGGCTAAGGGAACTGAAAGAAaggtaagtataagtgggaattcggtatgactctttacacgcaatctgggatt Alignment from Spaln_aa2Genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtaaaggatcagtgggggatggtgtcttctcttgtctcttttaagGCGCATCAATGGGTCAAGGAGGTTGTACTGGACACACACCACAATCCATTTAAGAGGCTAAGGGAACTGAAAGAAAGgtaagtataagtgggaattcggtatgactctttacacgcaatctggctca Alignment from Spaln_nt2Genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtaaaggatcagtgggggatggtgtcttctcttgtctcttttaagGCGCATCAATGGGTCAAGGAGGTTGTACTGGACACACACCACAATCCATTTAAGAGGCTAAGGGAACTGAAAGAAAGgtaagtataagtgggaattcggtatgactctttacacgcaatctggctca Alignment from Pairagon GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACA-CACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtaaaggatcagtgggggatggtgtcttctcttgtctcttttaagGCGCATCAATGGGTCAAGGAGGTTGTACTGGACACACACCACAATCCA-TTTAAGAGGCTAAGGGAACTGAAAGAAAGgtaagtataagtgggaattcggtatgactctttacacgcaatctggctca Alignment from Exonerate_protein2genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtaaaggatcagtgggggatggtgtcttctcttgtctcttttaagGCGCATCAATGGGTCAAGGAGGTTGTACTGGACACACACCACAATCCATTTAAGAGGCTAAGGGAACTGAAAGAAAGgtaagtataagtgggaattcggtatgactctttacacgcaatctggctca Alignment from Exonerate_coding2genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtaaaggatcagtgggggatggtgtcttctcttgtctcttttaagGCGCATCAATGGGTCAAGGAGGTTGTACTGGACACACACCACAATCCATTTAAGAGGCTAAGGGAACTGAAAGAAAGgtaagtataagtgggaattcggtatgactctttacacgcaatctggctca Alignment from GeneWise GACAG---------------------------------------------GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGGTAAAGGATCAGTGGGGGATGGTGTCTTCTCTTGTCTCTTTTAAGGCGCATCAATGGGTCAAGGAGGTTGTACTGGACACACACCACAATCCATTTAAGAGGCTAAGGGAACTGAAAGAAAGgtaagtataagtgggaattcggtatgactctttacacgcaatctggctca #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTG-AGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGCAGAGAAG-CCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttttttgtcctcctgtcttgcagGCGCA Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGCAGAGAAGCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggtgtcttctcttgtctcttttaagGCGCA Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGCAGAGAAGCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttttttgtcctcctgtcttgcagGCGCA Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGCAGAGAAGCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttttttgtcctcctgtcttgcagGCGCA Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGCAGAGAAGCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttttttgtcctcctgtcttgcagGCGCA Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGCAGAGAAGCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttttttgtcctcctgtcttgcagGCGCA Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGCAGAGAAGCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttttttgtcctcctgtcttgcagGCGCA Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGA---------------------------------------------CAGGCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGCAGAGAAGCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGGTAGGAGATCAGTGGGGGATGGTTTTTTGTCCTCCTGTCTTGCAGGCGCA #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTTCGCATC-GCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ctgttttgccatatgctagttgtgagagccttcctttgggctgcttgtagGTTGTACTACCCACAGTGGCTTCACTCCGCATTCGCAG-TTTTGAGAAGGGTGGCAAGTTTGTAGGGCACCGAACTCTACCTGTATCTGCAATCCACTCTggtaagattaggggggggctgacctctaaacagttacaaaattgtgtattc Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ctgttttgccatatgctagttgtgagagccttcctttgggctgcttgtagGTTGTACTACCCACAGTGGCTTCACTCCGCATTCGCAGTTTTGAGAAGGGTGGCAAGTTTGTAGGGCACCGAACTCTACCTGTATCTGCAATCCACTCTggtaagattaggggggggctgacctctaaacagttacaaaattgtgtcctt Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagttgtgagagccttcctttgggctgcttgtagGTTGTACTACCCACAGTGGCTTCACTCCGCATTCGCAGTTTTGAGAAGGGTGGCAAGTTTGTAGGGCACCGAACTCTACCTGTATCTGCAATCCACTCTGgtaagattaggggggggctgacctctaaacagttacaaaattgtgtattc Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCAT-CGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagttgtgagagccttcctttgggctgcttgtagGTTGTACTACCCACAGTGGCTTCACTCCGCATTCGCAG-TTTTGAGAAGGGTGGCAAGTTTGTAGGGCACCGAACTCTACCTGTATCTGCAATCCACTCTGgtaagattaggggggggctgacctctaaacagttacaaaattgtgtattc Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCA-TCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagttgtgagagccttcctttgggctgcttgtagGTTGTACTACCCACAGTGGCTTCACTCCGCATTCGCAG-TTTTGAGAAGGGTGGCAAGTTTGTAGGGCACCGAACTCTACCTGTATCTGCAATCCACTCTGgtaagattaggggggggctgacctctaaacagttacaaaattgtgtattc Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagttgtgagagccttcctttgggctgcttgtagGTTGTACTACCCACAGTGGCTTCACTCCGCATTCGCAGTTTTGAGAAGGGTGGCAAGTTTGTAGGGCACCGAACTCTACCTGTATCTGCAATCCACTCTGgtaagattaggggggggctgacctctaaacagttacaaaattgtgtattc Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagttgtgagagccttcctttgggctgcttgtagGTTGTACTACCCACAGTGGCTTCACTCCGCATTCGCAGTTTTGAGAAGGGTGGCAAGTTTGTAGGGCACCGAACTCTACCTGTATCTGCAATCCACTCTGgtaagattaggggggggctgacctctaaacagttacaaaattgtgtattc Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagttgtgagagccttcctttgggctgcttgtagGTTGTACTACCCACAGTGGCTTCACTCCGCATTCGCAGTTTTGAGAAGGGTGGCAAGTTTGTAGGGCACCGAACTCTACCTGTATCTGCAATCCACTCTGgtaagattaggggggggctgacctctaaacagttacaaaattgtgtattc #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAGATGTCATCC-TTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catcaggttggtctgtcaggtgattgcttcctggtgtccccatcccacagaaAGGAACAAGTGTTTTAGAATGTCATCTCTTCGCAG-AACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGgagtaagctcaccaatgtgtagtgccaggacgattactttgttgtcaacaat Alignment from CESAR aaAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catcaggttggtctgtcaggtgattgcttcctggtgtccccatcccacagaaAGGAACAAGTGTTTTAGAATGTCATCTCTTCGCAGAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGgagtaagctcaccaatgtgtagtgccaggacgattactttgttgtcaacaat Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctgtcaggtgattgcttcctggtgtccccatcccacagAAAGGAACAAGTGTTTTAGAATGTCATCTCTTCGCAGAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtaagctcaccaatgtgtagtgccaggacgattactttgttgtcaacaat Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATGTCATC-CTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctgtcaggtgattgcttcctggtgtccccatcccacagAAAGGAACAAGTGTTTTAGAATGTCATCTCTTCGCAGA-ACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtaagctcaccaatgtgtagtgccaggacgattactttgttgtcaacaat Alignment from Pairagon AAAGGAACAAGTGCTTCGAGATGTCATC-CTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctgtcaggtgattgcttcctggtgtccccatcccacagAAAGGAACAAGTGTTTTAGAATGTCATCTCTTCGCAGA-ACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtaagctcaccaatgtgtagtgccaggacgattactttgttgtcaacaat Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctgtcaggtgattgcttcctggtgtccccatcccacagAAAGGAACAAGTGTTTTAGAATGTCATCTCTTCGCAGAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtaagctcaccaatgtgtagtgccaggacgattactttgttgtcaacaat Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctgtcaggtgattgcttcctggtgtccccatcccacagAAAGGAACAAGTGTTTTAGAATGTCATCTCTTCGCAGAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtaagctcaccaatgtgtagtgccaggacgattactttgttgtcaacaat Alignment from GeneWise AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctgtcaggtgattgcttcctggtgtccccatcccacagAAAGGAACAAGTGTTTTAGAATGTCATCTCTTCGCAGAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtaagctcaccaatgtgtagtgccaggacgattactttgttgtcaacaat #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGAT-GCGCTGCTCATTGACCCTCTCGACAAATACCCG gtcatacttcaatattcacaggtcatattggtggcatttgctgtcctcagaGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATCGCACTAC-TATTGATCCTCTTGACAAGTATCCAgtaaccgacaggcatgaaactccagatgcatgtgggggagggaagcctga Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG gtcatacttcaatattcacaggtcatattggtggcatttgctgtcctcagaGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATCGCACTACTATTGATCCTCTTGACAAGTATCCAgtaaccgacaggcatgaaactccagatgcatgtgggggagggaagcctga Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG gtcatacttcaatattcacaggtcatattggtggcatttgctgtcctcagAGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATCGCACTACTATTGATCCTCTTGACAAGTATCCAgtaaccgacaggcatgaaactccagatgcatgtgggggagggaagcctga Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGAT-GCGCTGCTCATTGACCCTCTCGACAAATACCCG gtcatacttcaatattcacaggtcatattggtggcatttgctgtcctcagAGCAAAGCAGCA---CGAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATCGCACTACT-ATTGATCCTCTTGACAAGTATCCAgtaaccgacaggcatgaaactccagatgcatgtgggggagggaagcctga Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGAT-GCGCTGCTCATTGACCCTCTCGACAAATACCCG gtcatacttcaatattcacaggtcatattggtggcatttgctgtcctcagAGCAAAGCAGCA---CGAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATCGCACTACT-ATTGATCCTCTTGACAAGTATCCAgtaaccgacaggcatgaaactccagatgcatgtgggggagggaagcctga Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG gtcatacttcaatattcacaggtcatattggtggcatttgctgtcctcagAGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATCGCACTACTATTGATCCTCTTGACAAGTATCCAgtaaccgacaggcatgaaactccagatgcatgtgggggagggaagcctga Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG gtcatacttcaatattcacaggtcatattggtggcatttgctgtcctcagAGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATCGCACTACTATTGATCCTCTTGACAAGTATCCAgtaaccgacaggcatgaaactccagatgcatgtgggggagggaagcctga Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG gtcatacttcaatattcacaggtcatattggtggcatttgctgtcctcagAGCAAAGCAGCAC---GAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATCGCACTACTATTGATCCTCTTGACAAGTATCCAgtaaccgacaggcatgaaactccagatgcatgtgggggagggaagcctga #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTG-GCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc gggattaaccgcctgctccattccactaagcccttctgcttttccacaagGTATGGTCAGAGGAGTTGTTTAGATTAGCCATGAACATATTGCGCCCAGA-TGCATCCCAAAACACATTCTCGCGTAAAgcgtgaggctacaaccacacaggggggtggtagaatgtctcactgtgcacca Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc gggattaaccgcctgctccattccactaagcccttctgcttttccacaagGTATGGTCAGAGGAGTTGTTTAGATTAGCCATGAACATATTGCGCCCAGATGCATCCCAAAACACATTCTCGCGTAAAgcgtgaggctacaaccacacaggggggtggtagaatgtctcactgtgcacca Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggattaaccgcctgctccattccactaagcccttctgcttttccacaagGTATGGTCAGAGGAGTTGTTTAGATTAGCCATGAACATATTGCGCCCAGATGCATCCCAAAACACATTCTCGCGTAAAGCgtgaggctacaaccacacaggggggtggtagaatgtctcactgtgcacca Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTG-GCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggattaaccgcctgctccattccactaagcccttctgcttttccacaagGTATGGTCAGAGGAGTTGTTTAGATTAGCCATGAACATATTGCGCCCAG-ATGCATCCCAAAACACATTCTCGCGTAAAGCgtgaggctacaaccacacaggggggtggtagaatgtctcactgtgcacca Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCC--------TCCCGGAACACCTTCCTGCGGAAAGC gggattaaccgcctgctccattccactaagcccttctgcttttccacaagGTATGGTCAGAGGAGTTGTTTAGATTAGCCATGAACATATTG--------CGCCCAGATGCATCCCAAAACACATTCTCGCGTAAAGCgtgaggctacaaccacacaggggggtggtagaatgtctcactgtgcacca Alignment from Exonerate_protein2genome gggattaaccgcctgctccattccactaagcccttctgcttttccacaaggtatggtcagaggagttgtttagattagccatgaacatattgcgcccagatgcatcccaaaacacattctcgcgtaaagcgtgaggctacaaccacacaggggggtggtagaatgtctcactgtgcacca Alignment from Exonerate_coding2genome gggattaaccgcctgctccattccactaagcccttctgcttttccacaaggtatggtcagaggagttgtttagattagccatgaacatattgcgcccagatgcatcccaaaacacattctcgcgtaaagcgtgaggctacaaccacacaggggggtggtagaatgtctcactgtgcacca Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggattaaccgcctgctccattccactaagcccttctgcttttccacaagGTATGGTCAGAGGAGTTGTTTAGATTAGCCATGAACATATTGCGCCCAGATGCATCCCAAAACACATTCTCGCGTAAAGCgtgaggctacaaccacacaggggggtggtagaatgtctcactgtgcacca #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGG-ACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGCACAG-TCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGCACAGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGCACAGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGCACAGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGCACAGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGCACAGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Exonerate_coding2genome tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaaggaggtggacacactggatatcagctcaatcagagatacaaggcacagtcgttatgctcacctgcccaaagtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGCACAGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAAC-ACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACCACCTGCT-CTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACCACCTGCTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACCACCTGCTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACCACCTGCTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACCACCTGCTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACCACCTGCTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Exonerate_coding2genome TTCCTACTGGGAGCAGCTCAGGGGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagTTTCCCATTTCCTTTGAATCAGGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACCACCTGCTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACCACCTGCTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac #### Pola2_ID1323_17 --> 1 - 0 Original Alignment tTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTAT-ACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggatgggtgactgtatggtcaggagatcgccaacctttctcttcctgtagtTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACCACCT-TGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgtgttttggattgctttctcttttgtgaacagcctgggacttctgata Alignment from CESAR tTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggatgggtgactgtatggtcaggagatcgccaacctttctcttcctgtagtTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACCACCTTGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgtgttttggattgctttctcttttgtgaacagcctgggacttctgata Alignment from Spaln_aa2Genome TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggatgggtgactgtatggtcaggagatcgccaacctttctcttcctgtagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACCACCTTGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgtgttttggattgctttctcttttgtgaacagcctgggacttctgata Alignment from Spaln_nt2Genome TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggatgggtgactgtatggtcaggagatcgccaacctttctcttcctgtagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACCACCTTGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgtgttttggattgctttctcttttgtgaacagcctgggacttctgata Alignment from Pairagon TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggatgggtgactgtatggtcaggagatcgccaacctttctcttcctgtagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACCACCTTGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgtgttttggattgctttctcttttgtgaacagcctgggacttctgata Alignment from Exonerate_protein2genome TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggatgggtgactgtatggtcaggagatcgccaacctttctcttcctgtagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACCACCTTGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgtgttttggattgctttctcttttgtgaacagcctgggacttctgata Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggatgggtgactgtatggtcaggagatcgccaacctttctcttcctgtagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACCACCTTGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgtgttttggattgctttctcttttgtgaacagcctgggacttctgata #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGAC-AGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag tactggatcaggaacctgtcttattcccttttttatcttcattgtcttagcTCCTTGGGGACACCAGATCAGATTCA-CAGAGTCCTCAAGCACATACTGACACAGAGGaggtgggcgaaatagcaaaacgaaccatatttactagcaaggagatttagac Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag tactggatcaggaacctgtcttattcccttttttatcttcattgtcttagcTCCTTGGGGACACCAGATCAGATTCACAGAGTCCTCAAGCACATACTGACACAGAGGaggtgggcgaaatagcaaaacgaaccatatttactagcaaggagatttagac Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactggatcaggaacctgtcttattcccttttttatcttcattgtcttagCTCCTTGGGGACACCAGATCAGATTCACAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgggcgaaatagcaaaacgaaccatatttactagcaaggagatttagac Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGA-CAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactggatcaggaacctgtcttattcccttttttatcttcattgtcttagCTCCTTGGGGACACCAGATCAGATTCA-CAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgggcgaaatagcaaaacgaaccatatttactagcaaggagatttagac Alignment from Pairagon CTCTTCCGGGACGTCAGA-CAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactggatcaggaacctgtcttattcccttttttatcttcattgtcttagCTCCTTGGGGACACCAGATCAGATTCA-CAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgggcgaaatagcaaaacgaaccatatttactagcaaggagatttagac Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactggatcaggaacctgtcttattcccttttttatcttcattgtcttagCTCCTTGGGGACACCAGATCAGATTCACAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgggcgaaatagcaaaacgaaccatatttactagcaaggagatttagac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactggatcaggaacctgtcttattcccttttttatcttcattgtcttagCTCCTTGGGGACACCAGATCAGATTCACAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgggcgaaatagcaaaacgaaccatatttactagcaaggagatttagac #### Pola2_ID1325_15 --> 0 - 2 Original Alignment CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGAC-CTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agctcactgtaggttttattgcaaggagctcaccccatctgtgtcctcagCGAGTGCAGTTTGTATCGGAGCCCTGCAGCCTACCGATAAATGGAGTAATG---TATTCAACTACTGCAGACCTTACTGTATC-CCTTGGGGCTGAGGAACTGTTTaggtaagtccattcaacccaataaggagagttacataacatggttcttgaag Alignment from CESAR CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agctcactgtaggttttattgcaaggagctcaccccatctgtgtcctcagCGAGTGCAGTTTGTATCGGAGCCCTGCAGCCTACCGATAAATGGAGTAATGTAT---TCAACTACTGCAGACCTTACTGTATCCCTTGGGGCTGAGGAACTGTTTaggtaagtccattcaacccaataaggagagttacataacatggttcttgaag Alignment from Spaln_aa2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctcaccccatctgtgtcctcagCGAGTGCAGTTTGTATCGGAGCCCTGCAGCCTACCGATAAATGGAGTAATGTATTCA---ACTACTGCAGACCTTACTGTATCCCTTGGGGCTGAGGAACTGTTTAGgtaagtccattcaacccaataaggagagttacataacatggttcttgaag Alignment from Spaln_nt2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTG-CTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctcaccccatctgtgtcctcagCGAGTGCAGTTTGTATCGGAGCCCTGCAGCCTACCGATAAATGGAGTAATGT---ATTCAACTACTGCAGACCTTACTGTATC-CCTTGGGGCTGAGGAACTGTTTAGgtaagtccattcaacccaataaggagagttacataacatggttcttgaag Alignment from Pairagon CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGT------------------------------TTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctcaccccatctgtgtcctcagCGAGTGCAGTTTGTATCGGAGCCCTGCAGCCTACCGATAAATGGAGTAATGTATTCAACTACTGCAGACCTTACTGTATCCCTT---------------------------------GGGGCTGAGGAACTGTTTAGgtaagtccattcaacccaataaggagagttacataacatggttcttgaag Alignment from Exonerate_protein2genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctcaccccatctgtgtcctcagCGAGTGCAGTTTGTATCGGAGCCCTGCAGCCTACCGATAAATGGAGTAATGTATTCA---ACTACTGCAGACCTTACTGTATCCCTTGGGGCTGAGGAACTGTTTAGgtaagtccattcaacccaataaggagagttacataacatggttcttgaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctcaccccatctgtgtcctcagCGAGTGCAGTTTGTATCGGAGCCCTGCAGCCTACCGATAAATGGAGTAATGTATTCA---ACTACTGCAGACCTTACTGTATCCCTTGGGGCTGAGGAACTGTTTAGgtaagtccattcaacccaataaggagagttacataacatggttcttgaag #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAA-GACCCTCACTTCCAATGCag cactccactaccaccccctgattgtctctcataactcatgcctccaccaggtATCTCGAGGTTGTTGCAGTGC---AGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAACGACC-TCACTATTGGTGTacgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from CESAR gtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag cactccactaccaccccctgattgtctctcataactcatgcctccaccaggtATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAACGACCTCACTATTGGTGTacgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAACGACCTCACTATTGGTGTACgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAACGACCTCACTATTGGTGTACgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Pairagon GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCAC------- cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAACGACCTCACTATTGGTgtacgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAACGACCTCACTATTGGTGTACgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAACGACCTCACTATTGGTGTACGtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from GeneWise GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGCCTGTGGCATCTCTACCCACTC cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAACGACCTCACTATTGGTGTACGTTT------GTACAGCCTGTCtatctggaagctcatctggagtgtgtta #### Poll_ID9484_3 --> 1 - 0 Original Alignment gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGAT-TTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG gaccattcatactctttaaatagctcctatcttggtctcacttttctcaggTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAAGAT---TCTGCTCCTGGTATACAGTGGGACCTTGCCCAGAA-CACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCGCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtgagcttgcaagccactcaagaccgttagtgatagaaaatgcaagtatc Alignment from CESAR gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG gaccattcatactctttaaatagctcctatcttggtctcacttttctcaggTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAAGAT---TCTGCTCCTGGTATACAGTGGGACCTTGCCCAGAACACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCGCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtgagcttgcaagccactcaagaccgttagtgatagaaaatgcaagtatc Alignment from Spaln_aa2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG gaccattcatactctttaaatagctcctatcttggtctcacttttctcagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAAGAT---TCTGCTCCTGGTATACAGTGGGACCTTGCCCAGAACACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCGCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtgagcttgcaagccactcaagaccgttagtgatagaaaatgcaagtatc Alignment from Spaln_nt2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG gaccattcatactctttaaatagctcctatcttggtctcacttttctcagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAAGAT---TCTGCTCCTGGTATACAGTGGGACCTTGCCCAGAACACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCGCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtgagcttgcaagccactcaagaccgttagtgatagaaaatgcaagtatc Alignment from Pairagon GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG gaccattcatactctttaaatagctcctatcttggtctcacttttctcagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAAGA---TTCTGCTCCTGGTATACAGTGGGACCTTGCCCAGAACACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCGCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtgagcttgcaagccactcaagaccgttagtgatagaaaatgcaagtatc Alignment from Exonerate_protein2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG gaccattcatactctttaaatagctcctatcttggtctcacttttctcagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAAGAT---TCTGCTCCTGGTATACAGTGGGACCTTGCCCAGAACACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCGCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtgagcttgcaagccactcaagaccgttagtgatagaaaatgcaagtatc Alignment from Exonerate_coding2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG gaccattcatactctttaaatagctcctatcttggtctcacttttctcagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAAGAT---TCTGCTCCTGGTATACAGTGGGACCTTGCCCAGAACACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCGCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtgagcttgcaagccactcaagaccgttagtgatagaaaatgcaagtatc Alignment from GeneWise GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG gaccattcatactctttaaatagctcctatcttggtctcacttttctcagGTCCTTGGATGAGCCACAGCCCAGCAAGTCTGGCCAAGAT---TCTGCTCCTGGTATACAGTGGGACCTTGCCCAGAACACACTCTCTCTTTCCCCTCCCCACCCTCGAGCAGTATCACCGCCTCCAACAGCAGAAAAACCATCCAGAACTCGAGCCCAAgtgagcttgcaagccactcaagaccgttagtgatagaaaatgcaagtatc #### Polr2g_ID2377_6 --> 0 - 0 Original Alignment GACATTGTGATTCAGCAG---GACGATGAGATACGCTTGAAGATTGTAGGCACGCGT-GTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTGGATGAG------ATACAGCTAAAGATAATAGGGACACATCGTAG-TAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from CESAR GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATACAGCTAAAGATAATAGGGACACATCGTAGTAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Spaln_aa2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATACAGCTAAAGATAATAGGGACACATCGTAGTAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Spaln_nt2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGT-GTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATACAGCTAAAGATAATAGGGACACATCGTAG-TAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Pairagon GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATTTTTGCCATTGGCTCTCTGATGGACGACTACTTGGGGCTCGTGAGC agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATAC-----------------------------------------------------------------------------------AGCtaaagataatagggacacatcgtagtaaaaatgatgttgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Exonerate_protein2genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATACAGCTAAAGATAATAGGGACACATCGTAGTAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Exonerate_coding2genome agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagggcatattgattcagctggatgagatacagctaaagataatagggacacatcgtagtaaaaatgatgttgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from GeneWise agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagggcatattgattcagctggatgagatacagctaaagataatagggacacatcgtagtaaaaatgatgttgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca #### Ppp1ca_ID411_5 --> 2 - 0 Original Alignment gcCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTC-TCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgctctcatcctttagttatataaaagaccttttatatttttgattttaggcCTGTCGCCAGGTTTACAATCCATGGAGCAAATCAGGCATATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTGCTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTCTCCTTTACCT-TGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtgagtgaaaatgacacttagactggtgggcagtccccatgaattgacca Alignment from CESAR gcCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgctctcatcctttagttatataaaagaccttttatatttttgattttaggcCTGTCGCCAGGTTTACAATCCATGGAGCAAATCAGGCATATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTGCTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTCTCCTTTACCTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtgagtgaaaatgacacttagactggtgggcagtccccatgaattgacca Alignment from Spaln_aa2Genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgctctcatcctttagttatataaaagaccttttatatttttgattttagGCCTGTCGCCAGGTTTACAATCCATGGAGCAAATCAGGCATATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTGCTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTCTCCTTTACCTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtgagtgaaaatgacacttagactggtgggcagtccccatgaattgacca Alignment from Spaln_nt2Genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgctctcatcctttagttatataaaagaccttttatatttttgattttagGCCTGTCGCCAGGTTTACAATCCATGGAGCAAATCAGGCATATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTGCTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTCTCCTTTACCTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtgagtgaaaatgacacttagactggtgggcagtccccatgaattgacca Alignment from Pairagon GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTG-TCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgctctcatcctttagttatataaaagaccttttatatttttgattttagGCCTGTCGCCAGGTTTACAATCCATGGAGCAAATCAGGCATATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTGCTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTCTCCTTTACC-TTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtgagtgaaaatgacacttagactggtgggcagtccccatgaattgacca Alignment from Exonerate_protein2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgctctcatcctttagttatataaaagaccttttatatttttgattttagGCCTGTCGCCAGGTTTACAATCCATGGAGCAAATCAGGCATATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTGCTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTCTCCTTTACCTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtgagtgaaaatgacacttagactggtgggcagtccccatgaattgacca Alignment from Exonerate_coding2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgctctcatcctttagttatataaaagaccttttatatttttgattttagGCCTGTCGCCAGGTTTACAATCCATGGAGCAAATCAGGCATATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTGCTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTCTCCTTTACCTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtgagtgaaaatgacacttagactggtgggcagtccccatgaattgacca Alignment from GeneWise GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG tgctctcatcctttagttatataaaagaccttttatatttttgattttagGCCTGTCGCCAGGTTTACAATCCATGGAGCAAATCAGGCATATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTGCTGTGTGATCTCCTGTGGTCTGATCCTGATAAGGATGTTCAAGGCTGGGCTGAGAATGACCGAGGTGTTCTCCTTTACCTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCATAAGCATGATTTGGACCTTATTTGCAGAGCTCATCAGgtgagtgaaaatgacacttagactggtgggcagtccccatgaattgacca #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTTGAC-TGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACCTGTT-TAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from CESAR GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttctga Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from Spaln_nt2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from Pairagon GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from Exonerate_protein2genome atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagcaactattagttgacctgtttaaacccactgaggtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from Exonerate_coding2genome atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagcaactattagttgacctgtttaaacccactgaggtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from GeneWise GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt #### Ppp1r32_ID2844_7 --> 0 - 0 Original Alignment GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTAC-CTCCCTGTAACTCACCCTCAG gctgcaacacatgtccaccgttaaatgttatgtcttatattgctttacagGTTCTTCATCCAGGTCGAAGTATCAGCAAGTCATACTACCCTCCCTC-AACGCACCCTCAGgtaagcattgcagcctgtcagaacaatatgtatgcaccatgtgcggaggt Alignment from CESAR GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctgcaacacatgtccaccgttaaatgttatgtcttatattgctttacagGTTCTTCATCCAGGTCGAAGTATCAGCAAGTCATACTACCCTCCCTCAACGCACCCTCAGgtaagcattgcagcctgtcagaacaatatgtatgcaccatgtgcggaggt Alignment from Spaln_aa2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctgcaacacatgtccaccgttaaatgttatgtcttatattgctttacagGTTCTTCATCCAGGTCGAAGTATCAGCAAGTCATACTACCCTCCCTCAACGCACCCTCAGgtaagcattgcagcctgtcagaacaatatgtatgcaccatgtgcggaggt Alignment from Spaln_nt2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctgcaacacatgtccaccgttaaatgttatgtcttatattgctttacagGTTCTTCATCCAGGTCGAAGTATCAGCAAGTCATACTACCCTCCCTCAACGCACCCTCAGgtaagcattgcagcctgtcagaacaatatgtatgcaccatgtgcggaggt Alignment from Pairagon GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctgcaacacatgtccaccgttaaatgttatgtcttatattgctttacagGTTCTTCATCCAGGTCGAAGTATCAGCAAGTCATACTACCCTCCCTCAACGCACCCTCAGgtaagcattgcagcctgtcagaacaatatgtatgcaccatgtgcggaggt Alignment from Exonerate_protein2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctgcaacacatgtccaccgttaaatgttatgtcttatattgctttacagGTTCTTCATCCAGGTCGAAGTATCAGCAAGTCATACTACCCTCCCTCAACGCACCCTCAGgtaagcattgcagcctgtcagaacaatatgtatgcaccatgtgcggaggt Alignment from Exonerate_coding2genome gctgcaacacatgtccaccgttaaatgttatgtcttatattgctttacaggttcttcatccaggtcgaagtatcagcaagtcatactaccctccctcaacgcaccctcaggtaagcattgcagcctgtcagaacaatatgtatgcaccatgtgcggaggt Alignment from GeneWise GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctgcaacacatgtccaccgttaaatgttatgtcttatattgctttacagGTTCTTCATCCAGGTCGAAGTATCAGCAAGTCATACTACCCTCCCTCAACGCACCCTCAGgtaagcattgcagcctgtcagaacaatatgtatgcaccatgtgcggaggt #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCG-TGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg tgctgaacttttctgtgacattcttccttaatcttatctccactgctcagtcTCCAATGAAGTGCCAGAACACCCCCTGCGTGT-ACCTGTCTCCAACCACGTGTATGAGCAGCGACTTATTGAGAAGTACATCGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAggtgagccccctttcacattagttgcttacctttcacactggaagtcagac Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg tgctgaacttttctgtgacattcttccttaatcttatctccactgctcagtcTCCAATGAAGTGCCAGAACACCCCCTGCGTGTACCTGTCTCCAACCACGTGTATGAGCAGCGACTTATTGAGAAGTACATCGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAggtgagccccctttcacattagttgcttacctttcacactggaagtcagac Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgctgaacttttctgtgacattcttccttaatcttatctccactgctcagTCTCCAATGAAGTGCCAGAACACCCCCTGCGTGTACCTGTCTCCAACCACGTGTATGAGCAGCGACTTATTGAGAAGTACATCGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtgagccccctttcacattagttgcttacctttcacactggaagtcagac Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCG-TGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgctgaacttttctgtgacattcttccttaatcttatctccactgctcagTCTCCAATGAAGTGCCAGAACACCCCCTGCGTGT-ACCTGTCTCCAACCACGTGTATGAGCAGCGACTTATTGAGAAGTACATCGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtgagccccctttcacattagttgcttacctttcacactggaagtcagac Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCA-CCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgctgaacttttctgtgacattcttccttaatcttatctccactgctcagTCTCCAATGAAGTGCCAGAACACCCCCTGCGTGT-ACCTGTCTCCAACCACGTGTATGAGCAGCGACTTATTGAGAAGTACATCGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtgagccccctttcacattagttgcttacctttcacactggaagtcagac Alignment from Exonerate_protein2genome CTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgctgaacttttctgtgacattcttccttaatcttatCTCCACTGCTCAGTCTCCAATGAAGTGCCAGAACACCCCCTGCGTGTACCTGTCTCCAACCACGTGTATGAGCAGCGACTTATTGAGAAGTACATCGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtgagccccctttcacattagttgcttacctttcacactggaagtcagac Alignment from Exonerate_coding2genome CTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgctgaacttttctgtgacattcttccttaatcttatCTCCACTGCTCAGTCTCCAATGAAGTGCCAGAACACCCCCTGCGTGTACCTGTCTCCAACCACGTGTATGAGCAGCGACTTATTGAGAAGTACATCGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtgagccccctttcacattagttgcttacctttcacactggaagtcagac Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgaacttttctgtgacattcttccttaatcttat---CTCCACTGCTCAGTCTCCAATGAAGTGCCAGAACACCCCCTGCGTGTACCTGTCTCCAACCACGTGTATGAGCAGCGACTTATTGAGAAGTACATCGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtgagccccctttcacattagttgcttacctttcacactggaagtcagac #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttacatgcaagcaatatgctgcactgctgccttcctgtagttGCACACCCAATTCGACCCCAAGC-TCCCTCTGCGACCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtgaggaaacttaatttttaaattttactttagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttacatgcaagcaatatgctgcactgctgccttcctgtagttGCACACCCAATTCGACCCCAAGCTCCCTCTGCGACCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtgaggaaacttacttctctttatttgtaatagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttacatgcaagcaatatgctgcactgctgccttcctgtagTTGCACACCCAATTCGACCCCAAGCTCCCTCTGCGACCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtgaggaaacttaatttttaaattttactttagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttacatgcaagcaatatgctgcactgctgccttcctgtagTTGCACACCCAATTCGACCCCAAGCTCCCTCTGCGACCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtgaggaaacttaatttttaaattttactttagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttacatgcaagcaatatgctgcactgctgccttcctgtagTTGCACACCCAATTCGACCCCAAGCTCCCTCTGCGACCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtgaggaaacttaatttttaaattttactttagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttacatgcaagcaatatgctgcactgctgccttcctgtagTTGCACACCCAATTCGACCCCAAGCTCCCTCTGCGACCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtgaggaaacttaatttttaaattttactttagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome GATGCAGTCATGCTGCA atgtgagaggttacatgcaagcaatatgctgcactgctgccttcctgtagttgcacacccaattcgaccccaagctccctctgcgaccagtattccagccatcctaaaggccttgcaagatgagtgggtgaggaaacttaatttttaaattttactttagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttacatgcaagcaatatgctgcactgctgccttcctgtagTTGCACACCCAATTCGACCCCAAGCTCCCTCTGCGACCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtgaggaaacttaatttttaaattttactttagGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGC-CAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg ctCTGGCTA CCTTGCAAGATGAGTGGgtacccaaacttacttctctttatttgtaatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCCAAC-ACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtctcattccactgttcaggcttctgtttattttcagccTTGGCCA Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg ctCTGGCTA CCTTGCAAGATGAGTGGgtgaggaaacttacttctctttatttgtaatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCCAACACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtctcattccactgtttatgtttaacttctgttttagccTTGGCCA Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTGCAAGATGAGTGGgtacccaaacttacttctctttatttgtaatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCCAACACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtctcattccactgttcaggcttctgtttattttcagCCTTGGCCA Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTGCAAGATGAGTGGgtacccaaacttacttctctttatttgtaatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCCAACACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtctcattccactgttcaggcttctgtttattttcagCCTTGGCCA Alignment from Pairagon CCTTGCAGGATGAGTG---------------------------------GGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTGCAAGATGAGTGGGTACCCAAACTTACTTCTCTTTATTTGTAATAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCCAACACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtctcattccactgttcaggcttctgtttattttcagCCTTGGCCA Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTGCAAGATGAGTGGgtacccaaacttacttctctttatttgtaatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCCAACACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtctcattccactgttcaggcttctgtttattttcagCCTTGGCCA Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTGCAAGATGAGTGGgtacccaaacttacttctctttatttgtaatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCCAACACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtctcattccactgttcaggcttctgtttattttcagCCTTGGCCA Alignment from GeneWise CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTGCAAGATGAGTGGgtacccaaacttacttctctttatttgtaatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCCAACACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtctcattccactgttcaggcttctgtttattttcagCCTTGGCCA #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATG-ACCCCTGAGATTATCCAGAAG gtttttgttgtaggtagtctgtcatgtgttggccatccttgtatccacagGGGGCTGGAGATGCGATGGACTTGGGTGAGCTGGTTGGGGAAATGCACCCCAG-GATTATCCAGAAAgttgtatgagatccatccacagcaagctgcgacctcatcatattaaccac Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG--- gtttttgttgtaggtagtctgtcatgtgttggccatccttgtatccacagGGGGCTGGAGATGCGATGGACTTGGGTGAGCTGGTTGGGGAAATGCACCCCAGGATTATCCAGAAAGTTgtatgagatccatccacagcaagctgcgacctcatcatattaaccac Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG gtttttgttgtaggtagtctgtcatgtgttggccatccttgtatccacagGGGGCTGGAGATGCGATGGACTTGGGTGAGCTGGTTGGGGAAATGCACCCCAGGATTATCCAGAAAgttgtatgagatccatccacagcaagctgcgacctcatcatattaaccac Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGG---AATGACCCCTGAGATTATCCAGAAG gtttttgttgtaggtagtctgtcatgtgttggccatccttgtatccacagGGGGCTGGAGATGCGATGGACTTGGGTGAGCTGGTTGGGGAAATGCACCCCAGGATTATCCAGAAAgttgtatgagatccatccacagcaagctgcgacctcatcatattaaccac Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGT---GGGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtaggtagtctgtcatgtgttggccatccttgtatccacagGGGGCTGGAGATGCGATGGACTTGGGTGAGCTGGTTGGGGAAATGCACCCCAGGATTATCCAGAAAgttgtatgagatccatccacagcaagctgcgacctcatcatattaaccac Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG gtttttgttgtaggtagtctgtcatgtgttggccatccttgtatccacagGGGGCTGGAGATGCGATGGACTTGGGTGAGCTGGTTGGGGAAATGCACCCCAGGATTATCCAGAAAgttgtatgagatccatccacagcaagctgcgacctcatcatattaaccac Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG gtttttgttgtaggtagtctgtcatgtgttggccatccttgtatccacagGGGGCTGGAGATGCGATGGACTTGGGTGAGCTGGTTGGGGAAATGCACCCCAGGATTATCCAGAAAgttgtatgagatccatccacagcaagctgcgacctcatcatattaaccac Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG gtttttgttgtaggtagtctgtcatgtgttggccatccttgtatccacagGGGGCTGGAGATGCGATGGACTTGGGTGAGCTGGTTGGGGAAATGCACCCCAGGATTATCCAGAAAgttgtatgagatccatccacagcaagctgcgacctcatcatattaaccac #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTG-CTAACCACGGAG------CGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGCTTAACCA-AGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACC------ACGGAGCGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGCTTAACCAAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACC------ACGGAGCGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGCTTAACCAAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCT-AACCACG-----GAGCGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGCTTAACCAAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from Pairagon CTTCAAGACAAGGCTACTGTGCT-----------------AACCACGGAGCGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGCTTAACCAAGACACAGGACAA-----------AAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACC------ACGGAGCGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGCTTAACCAAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from Exonerate_coding2genome aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagcttcaagacaaggccactgtgcttaaccaagacacaggacaaaagaaagtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACC------ACGGAGCGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGCTTAACCAAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGCATTCCTGGGATTCTC-GCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg gtggggccagggtactgcgaggcaattatacatatatcaaaacttggcagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTCGCTC-TGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTggtgagtgtgggtgtgacttaatattgaatgacagcctctacatcctcagc Alignment from CESAR GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg gtggggccagggtactgcgaggcaattatacatatatcaaaacttggcagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTCGCTCTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTggtgagtgtgggtgtgacttaatattgaatgacagcctctacatcctcagc Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG gtggggccagggtactgcgaggcaattatacatatatcaaaacttggcagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTCGCTCTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtgagtgtgggtgtgacttaatattgaatgacagcctctacatcctcagc Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG gtggggccagggtactgcgaggcaattatacatatatcaaaacttggcagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTCGCTCTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtgagtgtgggtgtgacttaatattgaatgacagcctctacatcctcagc Alignment from Pairagon GGTCTACACAGTGCTAGCATTCCTGGGATTC-TCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG gtggggccagggtactgcgaggcaattatacatatatcaaaacttggcagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTCGCTCT-GACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtgagtgtgggtgtgacttaatattgaatgacagcctctacatcctcagc Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG gtggggccagggtactgcgaggcaattatacatatatcaaaacttggcagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTCGCTCTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtgagtgtgggtgtgacttaatattgaatgacagcctctacatcctcagc Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG gtggggccagggtactgcgaggcaattatacatatatcaaaacttggcagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTCGCTCTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtgagtgtgggtgtgacttaatattgaatgacagcctctacatcctcagc Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG gtggggccagggtactgcgaggcaattatacatatatcaaaacttggcagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTCGCTCTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtgagtgtgggtgtgacttaatattgaatgacagcctctacatcctcagc #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGACAGTG-GACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGACAGTGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGACAGTGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGACAGTGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGACAGTGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGACAGTGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGACAGTGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGACAGTGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCC-ATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcaccttttctcattgagtcaattgacaataaaaccctatgtcacctcagGAGCACACTAATGTGGTAATCTTCCCT------GCTGGGCCTCATCACCA-CATTGTATTCTCTGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGAAAACGTACAGAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtaagttgcacttgatcccttttcttctcttttgcagttattgtgctacc Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcaccttttctcattgagtcaattgacaataaaaccctatgtcacctcagGAGCACACTAATGTGGTAATCTTCCCT------GCTGGGCCTCATCACCACATTGTATTCTCTGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGAAAACGTACAGAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtaagttgcacttgatcccttttcttctcttttgcagttattgtgctacc Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcaccttttctcattgagtcaattgacaataaaaccctatgtcacctcagGAGCACACTAATGTGGTAATCTTCCCT------GCTGGGCCTCATCACCACATTGTATTCTCTGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGAAAACGTACAGAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtaagttgcacttgatcccttttcttctcttttgcagttattgtgctacc Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCC-CATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGA---CTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcaccttttctcattgagtcaattgacaataaaaccctatgtcacctcagGAGCACACTAATGTGGTAATCTTCCCTG------CTGGGCCTCATCACCA-CATTGTATTCTCTGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGAAAACGTACAGAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtaagttgcacttgatcccttttcttctcttttgcagttattgtgctacc Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCT-GGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGG---ACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcaccttttctcattgagtcaattgacaataaaaccctatgtcacctcagGAGCACACTAATGTGGTAATCTTCCCTG------CTGGGCCTCATCACCA-CATTGTATTCTCTGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGAAAACGTACAGAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtaagttgcacttgatcccttttcttctcttttgcagttattgtgctacc Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcaccttttctcattgagtcaattgacaataaaaccctatgtcacctcagGAGCACACTAATGTGGTAATCTTCCCT------GCTGGGCCTCATCACCACATTGTATTCTCTGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGAAAACGTACAGAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtaagttgcacttgatcccttttcttctcttttgcagttattgtgctacc Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcaccttttctcattgagtcaattgacaataaaaccctatgtcacctcagGAGCACACTAATGTGGTAATCTTCCCT------GCTGGGCCTCATCACCACATTGTATTCTCTGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGAAAACGTACAGAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtaagttgcacttgatcccttttcttctcttttgcagttattgtgctacc Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcaccttttctcattgagtcaattgacaataaaaccctatgtcacctcagGAGCACACTAATGTGGTAATCTTCCCT------GCTGGGCCTCATCACCACATTGTATTCTCTGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGAAAACGTACAGAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtaagttgcacttgatcccttttcttctcttttgcagttattgtgctacc #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTG-GCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG tagtgaacctgctttctgagacctttcatattttgcctcccttttgctagCGGATTTATTATCTGTCTTTGGAGTTCTTCATGGGCCGGACACTACAAAACACCATGGTAAATCTTCGCCTTAGGGA-CGCCTGTGATGAGGCTACTTACCAGgtgaggaaagcagcatctatgtgagcatttgagttttacagatgccaatc Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG tagtgaacctgctttctgagacctttcatattttgcctcccttttgctagCGGATTTATTATCTGTCTTTGGAGTTCTTCATGGGCCGGACACTACAAAACACCATGGTAAATCTTCGCCTTAGGGACGCCTGTGATGAGGCTACTTACCAGgtgaggaaagcagcatctatgtgagcatttgagttttacagatgccattc Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG tagtgaacctgctttctgagacctttcatattttgcctcccttttgctagCGGATTTATTATCTGTCTTTGGAGTTCTTCATGGGCCGGACACTACAAAACACCATGGTAAATCTTCGCCTTAGGGACGCCTGTGATGAGGCTACTTACCAGgtgaggaaagcagcatctatgtgagcatttgagttttacagatgccaatc Alignment from Spaln_nt2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTG-GCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG tagtgaacctgctttctgagacctttcatattttgcctcccttttgctagCGGATTTATTATCTGTCTTTGGAGTTCTTCATGGGCCGGACACTACAAAACACCATGGTAAATCTTCGCCTTAG-GGACGCCTGTGATGAGGCTACTTACCAGgtgaggaaagcagcatctatgtgagcatttgagttttacagatgccaatc Alignment from Pairagon AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAA-CCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG tagtgaacctgctttctgagacctttcatattttgcctcccttttgctagCGGATTTATTATCTGTCTTTGGAGTTCTTCATGGGCCGGACACTACAAAACACCATGGTAAATCTTCGCCTTAG-GGACGCCTGTGATGAGGCTACTTACCAGgtgaggaaagcagcatctatgtgagcatttgagttttacagatgccaatc Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG tagtgaacctgctttctgagacctttcatattttgcctcccttttgctagCGGATTTATTATCTGTCTTTGGAGTTCTTCATGGGCCGGACACTACAAAACACCATGGTAAATCTTCGCCTTAGGGACGCCTGTGATGAGGCTACTTACCAGgtgaggaaagcagcatctatgtgagcatttgagttttacagatgccaatc Alignment from Exonerate_coding2genome tagtgaacctgctttctgagacctttcatattttgcctcccttttgctagcggatttattatctgtctttggagttcttcatgggccggacactacaaaacaccatggtaaatcttcgccttagggacgcctgtgatgaggctacttaccaggtgaggaaagcagcatctatgtgagcatttgagttttacagatgccaatc Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG tagtgaacctgctttctgagacctttcatattttgcctcccttttgctagCGGATTTATTATCTGTCTTTGGAGTTCTTCATGGGCCGGACACTACAAAACACCATGGTAAATCTTCGCCTTAGGGACGCCTGTGATGAGGCTACTTACCAGgtgaggaaagcagcatctatgtgagcatttgagttttacagatgccaatc #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAG-AACATCTCGCGTGTTTTGTACCCCAATGATAAT agaccatctcctccagttaacactgagcatatatctttttctctttccagtcAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGCAACATCT-CCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT agcccatctcctccagttaacactgagcatatatctttttctctttccagtcAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGCAACATCTCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT agaccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGCAACATCTCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAG-AACATCTCGCGTGTTTTGTACCCCAATGATAAT agaccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGCAACATCTC-CGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAG-AACATCTCGCGTGTTTTGTACCCCAATGATAAT agaccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGCAACATCTC-CGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT agaccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGCAACATCTCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT agaccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGCAACATCTCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT agaccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGCAACATCTCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGC-CACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgggtggagggcaactaatgcagacaggtttatgtaattgcagGCCTGGGATGTTACAGTAAAGACCTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTTGAGCGTTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCCACTTGCAGA-AATTTATGAGATTAATCAGTGTTTCCTGAATgtaaggataggatgatgaggaaggagcttgggtatgatgtataaatccat Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgggtggagggcaactaatgcagacaggtttatgtaattgcagGCCTGGGATGTTACAGTAAAGACCTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTTGAGCGTTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCCACTTGCAGAAATTTATGAGATTAATCAGTGTTTCCTGAATgtaaggataggatgatgaggaaggagcttgggtatgatgtataaatccat Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgggtggagggcaactaatgcagacaggtttatgtaattgcagGCCTGGGATGTTACAGTAAAGACCTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTTGAGCGTTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCCACTTGCAGAAATTTATGAGATTAATCAGTGTTTCCTGAATgtaaggataggatgatgaggaaggagcttgggtatgatgtataaatccat Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCG-CCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgggtggagggcaactaatgcagacaggtttatgtaattgcagGCCTGGGATGTTACAGTAAAGACCTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTTGAGCGTTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCCACTTGCAGA-AATTTATGAGATTAATCAGTGTTTCCTGAATgtaaggataggatgatgaggaaggagcttgggtatgatgtataaatccat Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCG-CCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgggtggagggcaactaatgcagacaggtttatgtaattgcagGCCTGGGATGTTACAGTAAAGACCTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTTGAGCGTTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCCACTTGCAGA-AATTTATGAGATTAATCAGTGTTTCCTGAATgtaaggataggatgatgaggaaggagcttgggtatgatgtataaatccat Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgggtggagggcaactaatgcagacaggtttatgtaattgcagGCCTGGGATGTTACAGTAAAGACCTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTTGAGCGTTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCCACTTGCAGAAATTTATGAGATTAATCAGTGTTTCCTGAATgtaaggataggatgatgaggaaggagcttgggtatgatgtataaatccat Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgggtggagggcaactaatgcagacaggtttatgtaattgcagGCCTGGGATGTTACAGTAAAGACCTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTTGAGCGTTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCCACTTGCAGAAATTTATGAGATTAATCAGTGTTTCCTGAATgtaaggataggatgatgaggaaggagcttgggtatgatgtataaatccat Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgggtggagggcaactaatgcagacaggtttatgtaattgcagGCCTGGGATGTTACAGTAAAGACCTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTTGAGCGTTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCCACTTGCAGAAATTTATGAGATTAATCAGTGTTTCCTGAATgtaaggataggatgatgaggaaggagcttgggtatgatgtataaatccat #### Pygm_ID1691_15 --> 2 - 0 Original Alignment gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACT-ATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtaggcATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTCATCA-GATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from CESAR gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtaggcATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTCATCAGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Spaln_aa2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTCATCAGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Spaln_nt2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTCATCAGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Pairagon GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTCATCAGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Exonerate_protein2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTCATCAGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Exonerate_coding2genome tcagagcattttcagagcaacagtaagtagccttacttttccttttgtaggcataaaaagggagctcaatcggttcatggtgccaaagactcatcagattggagggaaagtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from GeneWise GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTCATCAGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag #### Rasgrp2_ID1710_9 --> 0 - 0 Original Alignment GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTG-TACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gcaaaagggaaagagcaagtggggtgcatttttttctgcatggcctgcagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTACTACC-ACTCTCATTGCAGCGGAAGCCGTGCTCCAAGTCATGGgtacgtcatatacccaccaattatatgtgaaacgaggaatacaattcatt Alignment from CESAR GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gcaaaagggaaagagcaagtggggtgcatttttttctgcatggcctgcagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTACTACCACTCTCATTGCAGCGGAAGCCGTGCTCCAAGTCATGGgtacgtcatatacccaccaattatatgtgaaacgaggaatacaattcatt Alignment from Spaln_aa2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gcaaaagggaaagagcaagtggggtgcatttttttctgcatggcctgcagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTACTACCACTCTCATTGCAGCGGAAGCCGTGCTCCAAGTCATGGgtacgtcatatacccaccaattatatgtgaaacgaggaatacaattcatt Alignment from Spaln_nt2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gcaaaagggaaagagcaagtggggtgcatttttttctgcatggcctgcagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTACTACCACTCTCATTGCAGCGGAAGCCGTGCTCCAAGTCATGGgtacgtcatatacccaccaattatatgtgaaacgaggaatacaattcatt Alignment from Pairagon GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gcaaaagggaaagagcaagtggggtgcatttttttctgcatggcctgcagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTACTACCACTCTCATTGCAGCGGAAGCCGTGCTCCAAGTCATGGgtacgtcatatacccaccaattatatgtgaaacgaggaatacaattcatt Alignment from Exonerate_protein2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gcaaaagggaaagagcaagtggggtgcatttttttctgcatggcctgcagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTACTACCACTCTCATTGCAGCGGAAGCCGTGCTCCAAGTCATGGgtacgtcatatacccaccaattatatgtgaaacgaggaatacaattcatt Alignment from Exonerate_coding2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gcaaaagggaaagagcaagtggggtgcatttttttctgcatggcctgcagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTACTACCACTCTCATTGCAGCGGAAGCCGTGCTCCAAGTCATGGgtacgtcatatacccaccaattatatgtgaaacgaggaatacaattcatt Alignment from GeneWise GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gcaaaagggaaagagcaagtggggtgcatttttttctgcatggcctgcagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTACTACCACTCTCATTGCAGCGGAAGCCGTGCTCCAAGTCATGGgtacgtcatatacccaccaattatatgtgaaacgaggaatacaattcatt #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGG-CCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tgttgacttctactacaacccctcaggtctctcctctcctctctctccagCCTACCAGTCCAACAAGTTGTATGTCACCTCCTCGACCCT---G-CTTTGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaagtgcatgctcatttttctgaggctctaccccacccaatggcccact Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tgttgacttctactacaacccctcaggtctctcctctcctctctctccagCCTACCAGTCCAACAAGTTGTATGTCACCTCCTCGACCCTGC---TTTGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaagtgcatgctcatttttctgaggctctaccccacccaatggcccact Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tgttgacttctactacaacccctcaggtctctcctctcctctctctccagCCTACCAGTCCAACAAGTTGTATGTCACCTCCTCGA---CCCTGCTTTGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaagtgcatgctcatttttctgaggctctaccccacccaatggcccact Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tgttgacttctactacaacccctcaggtctctcctctcctctctctccagCCTACCAGTCCAACAAGTTGTATGTCACCTCCTCG--ACCCTG-CTTTGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaagtgcatgctcatttttctgaggctctaccccacccaatggcccact Alignment from Pairagon CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTG----GAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tgttgacttctactacaacccctcaggtctctcctctcctctctctccagCCTACCAGTCCAACAAGTTGTATGTCACCTCCTCGACCC-------TGCTTTGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaagtgcatgctcatttttctgaggctctaccccacccaatggcccact Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tgttgacttctactacaacccctcaggtctctcctctcctctctctccagCCTACCAGTCCAACAAGTTGTATGTCACCTCCTCGA---CCCTGCTTTGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaagtgcatgctcatttttctgaggctctaccccacccaatggcccact Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tgttgacttctactacaacccctcaggtctctcctctcctctctctccagCCTACCAGTCCAACAAGTTGTATGTCACCTCCTCGA---CCCTGCTTTGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaagtgcatgctcatttttctgaggctctaccccacccaatggcccact Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tgttgacttctactacaacccctcaggtctctcctctcctctctctccagCCTACCAGTCCAACAAGTTGTATGTCACCTCCTCGACCC---TGCTTTGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAAGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtaagtgcatgctcatttttctgaggctctaccccacccaatggcccact #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTGGGTCCACTGATGCAG-CTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg aaatgtgagaagtactgcaccttgtgctttctttttttattttaaatcagATCCTTTTCCCAGGTCCACTGACACAGCCTTTCTATGG-CTGTCCCTGTGACTTGACAGATGGATTGAAAGTTGTTCTGggtaacacccacatcttgctgggagagcagaatacaaaagcagtgcaaaat Alignment from CESAR ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg aaatgtgagaagtactgcaccttgtgctttctttttttattttaaatcagATCCTTTTCCCAGGTCCACTGACACAGCCTTTCTATGGCTGTCCCTGTGACTTGACAGATGGATTGAAAGTTGTTCTGggtaacacccacatcttgctgggagagcagaatacaaaagcagtgcaaaat Alignment from Spaln_aa2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttgtgctttctttttttattttaaatcagATCCTTTTCCCAGGTCCACTGACACAGCCTTTCTATGGCTGTCCCTGTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtaacacccacatcttgctgggagagcagaatacaaaagcagtgcaaaat Alignment from Spaln_nt2Genome ATCCTTTTCCTGGGTCCACTGATGCAGC-TCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttgtgctttctttttttattttaaatcagATCCTTTTCCCAGGTCCACTGACACAGCCTTTCTATGG-CTGTCCCTGTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtaacacccacatcttgctgggagagcagaatacaaaagcagtgcaaaat Alignment from Pairagon ATCCTTTTCCTGGGTCCACTGATGCAG-CTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttgtgctttctttttttattttaaatcagATCCTTTTCCCAGGTCCACTGACACAGCCTTTCTATGG-CTGTCCCTGTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtaacacccacatcttgctgggagagcagaatacaaaagcagtgcaaaat Alignment from Exonerate_protein2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttgtgctttctttttttattttaaatcagATCCTTTTCCCAGGTCCACTGACACAGCCTTTCTATGGCTGTCCCTGTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtaacacccacatcttgctgggagagcagaatacaaaagcagtgcaaaat Alignment from Exonerate_coding2genome aaatgtgagaagtactgcaccttgtgctttctttttttattttaaatcagatccttttcccaggtccactgacacagcctttctatggctgtccctgtgacttgacagatggattgaaagttgttctgggtaacacccacatcttgctgggagagcagaatacaaaagcagtgcaaaat Alignment from GeneWise ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttgtgctttctttttttattttaaatcagATCCTTTTCCCAGGTCCACTGACACAGCCTTTCTATGGCTGTCCCTGTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtaacacccacatcttgctgggagagcagaatacaaaagcagtgcaaaat #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTG-TCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcaggGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGCTCACCTCTTT-TGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcaggGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGCTCACCTCTTTTGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGCTCACCTCTTTTGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTG-TCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGCTCACCTCTTT-TGTGCTGCT------GGAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTG-TCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGCTCACCTCTTT-TGTGCTGCT------GGAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGCTCACCTCTTTTGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGCTCACCTCTTTTGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAG-ACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag tcttactcgaggggtcttattaggcctcttgtttgttttaccttcctcagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATACTACTACTCTTGGAAGAAGCACAC-TAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATaggtatttagtgtagtttctgacttaggggaatgataatggaacggaaaaag Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag tcttactcgaggggtcttattaggcctcttgtttgttttaccttcctcagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATACTACTACTCTTGGAAGAAGCACACTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATaggtatttagtgtagtttctgacttaggggaatgataatggaacggaaaaag Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tcttactcgaggggtcttattaggcctcttgtttgttttaccttcctcagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATACTACTACTCTTGGAAGAAGCACACTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtatttagtgtagtttctgacttaggggaatgataatggaacggaaaaag Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tcttactcgaggggtcttattaggcctcttgtttgttttaccttcctcagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATACTACTACTCTTGGAAGAAGCACACTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtatttagtgtagtttctgacttaggggaatgataatggaacggaaaaag Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tcttactcgaggggtcttattaggcctcttgtttgttttaccttcctcagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATACTACTACTCTTGGAAGAAGCACACTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtatttagtgtagtttctgacttaggggaatgataatggaacggaaaaag Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tcttactcgaggggtcttattaggcctcttgtttgttttaccttcctcagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATACTACTACTCTTGGAAGAAGCACACTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtatttagtgtagtttctgacttaggggaatgataatggaacggaaaaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tcttactcgaggggtcttattaggcctcttgtttgttttaccttcctcagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATACTACTACTCTTGGAAGAAGCACACTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtatttagtgtagtttctgacttaggggaatgataatggaacggaaaaag #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAG-TTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAACTTCAACTCCC-CTGGACCACTGATGAGGAACTTTTAGCAGTTCAAggtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAACTTCAACTCCCCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAggtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAACTTCAACTCCCCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAACTTCAACTCCCCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Pairagon GCTAATACCAAG-TTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAACTTCAACTCCC-CTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAACTTCAACTCCCCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Exonerate_coding2genome CTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTG--AGGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG CTTCTCCCATTTTTAGCTTTCATTGATATCTGGTCTTGCTTACCTTCCAGGCTAATACCAAACTTCAACTCCCCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAACTTCAACTCCCCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGC-AAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCC ggaccagctgttttgtccacattcagacatagttctactctgtcctgcagccATTTGTAGATATGGGCACAGACTTTG-GGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagtgacctctctatgaaacatttccctgccttaactttttcagGTAC Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCC ggaccagctgttttgtccacattcagacatagttctactctgtcctgcagccATTTGTAGATATGGGCACAGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagtgacctctctatgaaacatctgctgctctctgtgttttcagGTAC Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCC ggaccagctgttttgtccacattcagacatagttctactctgtcctgcagCCATTTGTAGATATGGGCACAGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagtgacctctctatgaaacatttccctgccttaactttttcagGTAC Alignment from Spaln_nt2Genome CTATTCGTAGATACGG-CAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCC ggaccagctgttttgtccacattcagacatagttctactctgtcctgcagCCATTTGTAGATATGGGCACAGACTTT-GGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagtgacctctctatgaaacatttccctgccttaactttttcagGTAC Alignment from Pairagon CTATTCGTAGATAC-GGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCC ggaccagctgttttgtccacattcagacatagttctactctgtcctgcagCCATTTGTAGATATGGGCACAGACTTT-GGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagtgacctctctatgaaacatttccctgccttaactttttcagGTAC Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCC ggaccagctgttttgtccacattcagacatagttctactctgtcctgcagCCATTTGTAGATATGGGCACAGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagtgacctctctatgaaacatttccctgccttaactttttcagGTAC Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCC ggaccagctgttttgtccacattcagacatagttctactctgtcctgcagCCATTTGTAGATATGGGCACAGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagtgacctctctatgaaacatttccctgccttaactttttcagGTAC Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCC ggaccagctgttttgtccacattcagacatagttctactctgtcctgcagCCATTTGTAGATATGGGCACAGACTTTGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAGGAGGATGATAAGgtaagtgacctctctatgaaacatttccctgccttaactttttcagGTAC #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGC-AGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacaccgtaccgccttttgtttttgtttttctcttagaaCCAGCCCAGGCAGCTGGCCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CGTTTCCACTATAAATCTGAGGGGCACTCTGAAGGTCGGTATCC-TGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtatgcaataaggtccttgtatggcaaacaaggaaagaagtctcagtatc Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacaccgtaccgccttttgtttttgtttttctcttagaaCCAGCCCAGGCAGCTGGCCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CGTTTCCACTATAAATCTGAGGGGCACTCTGAAGGTCGGTATCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtatgcaataaggtccttgtatggcaaacaaggaaagaagtctcagtatc Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacaccgtaccgccttttgtttttgtttttctcttagAACCAGCCCAGGCAGCTGGCCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CGTTTCCACTATAAATCTGAGGGGCACTCTGAAGGTCGGTATCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtatgcaataaggtccttgtatggcaaacaaggaaagaagtctcagtatc Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacaccgtaccgccttttgtttttgtttttctcttagAACCAGCCCAGGCAGCTGGCCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CGTTTCCACTATAAATCTGAGGGGCACTCTGAAGGTCGGTATCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtatgcaataaggtccttgtatggcaaacaaggaaagaagtctcagtatc Alignment from Pairagon AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacaccgtaccgccttttgtttttgtttttctcttagAACCAGCCCAGGCAGCTGGCCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CGTTTCCACTATAAATCTGAGGGGCACTCTGAAGGTCGGTATCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtatgcaataaggtccttgtatggcaaacaaggaaagaagtctcagtatc Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacaccgtaccgccttttgtttttgtttttctcttagAACCAGCCCAGGCAGCTGGCCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CGTTTCCACTATAAATCTGAGGGGCACTCTGAAGGTCGGTATCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtatgcaataaggtccttgtatggcaaacaaggaaagaagtctcagtatc Alignment from Exonerate_coding2genome ctggaggccagggcacaccgtaccgccttttgtttttgtttttctcttagaaccagcccaggcagctggcccttatgtagacatcatcaaacaaccaaaccaacaaggccgtttccactataaatctgaggggcactctgaaggtcggtatcctggtgagaggagcatggatactaaaaaaacacatcccactataaaggtatgcaataaggtccttgtatggcaaacaaggaaagaagtctcagtatc Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG agggcacaccgtaccgcct---------TTTGTTTTTGTTTTTCTCTTAGAACCAGCCCAGGCAGCTGGCCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CGTTTCCACTATAAATCTGAGGGGCACTCTGAAGGTCGGTATCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtatgcaataaggtccttgtatggcaaacaaggaaagaagtctcagtatc #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGG-CCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag tcagtatcatgtgctgaggtctcatgtctaatattcttcttttctttcagATCAACGGCTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCCTCATCCAC-TGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTATGCCCAGACCGCAGTATTCATaggtaaggtatttgtggtctgatggttctggcaagggaataccaaggtagac Alignment from CESAR ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag tcagtatcatgtgctgaggtctcatgtctaatattcttcttttctttcagATCAACGGCTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCCTCATCCACTGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTATGCCCAGACCGCAGTATTCATaggtaaggtatttgtggtctgatggttctggcaagggaataccaaggtagac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtctcatgtctaatattcttcttttctttcagATCAACGGCTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCCTCATCCACTGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTATGCCCAGACCGCAGTATTCATAGgtaaggtatttgtggtctgatggttctggcaagggaataccaaggtagac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtctcatgtctaatattcttcttttctttcagATCAACGGCTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCCTCATCCACTGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTATGCCCAGACCGCAGTATTCATAGgtaaggtatttgtggtctgatggttctggcaagggaataccaaggtagac Alignment from Pairagon ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCG-GCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtctcatgtctaatattcttcttttctttcagATCAACGGCTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCCTCATCCAC-TGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTATGCCCAGACCGCAGTATTCATAGgtaaggtatttgtggtctgatggttctggcaagggaataccaaggtagac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtctcatgtctaatattcttcttttctttcagATCAACGGCTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCCTCATCCACTGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTATGCCCAGACCGCAGTATTCATAGgtaaggtatttgtggtctgatggttctggcaagggaataccaaggtagac Alignment from Exonerate_coding2genome tcagtatcatgtgctgaggtctcatgtctaatattcttcttttctttcagatcaacggctacacaggtccaggaacagttcgaatctccctggttaccaaggacccacctcaccgcccctcatccactgaacttgtaggggaggactgttgggatggctactatgaggctgatctatgcccagaccgcagtattcataggtaaggtatttgtggtctgatggttctggcaagggaataccaaggtagac Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtctcatgtctaatattcttcttttctttcagATCAACGGCTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCCTCATCCACTGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTATGCCCAGACCGCAGTATTCATAGgtaaggtatttgtggtctgatggttctggcaagggaataccaaggtagac #### Rin1_ID808_3 --> 0 - 1 Original Alignment G ACCTTCCTGGTGCGGAAATCTAACACT-CGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg GgtaaagctcttggttacgagacctaaagatatcctacttcaatctgtagACATTTGTTATATGCAAATACAACACTCCGACAGT-CCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGTCACTATATTGAGGAAGGTACTGGTggtaagcaggataataaggggggggtctagacacatccctaagtacatgaa Alignment from CESAR G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg GgtgagtctcttggttacgagacctaaagatatcctacttcaatctgtagACATTTGTTATATGCAAATACAACACTCCGACAGTCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGTCACTATATTGAGGAAGGTACTGGTggtaagcaggataataaggggggggtctagacacatccctaagtacatgaa Alignment from Spaln_aa2Genome G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaaagctcttggttacgagacctaaagatatcctacttcaatctgtagACATTTGTTATATGCAAATACAACACTCCGACAGTCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGTCACTATATTGAGGAAGGTACTGGTGgtaagcaggataataaggggggggtctagacacatccctaagtacatgaa Alignment from Spaln_nt2Genome G ACCTTCCTGGTGCGGAAATCTAACACTC-GCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaaagctcttggttacgagacctaaagatatcctacttcaatctgtagACATTTGTTATATGCAAATACAACACTCCGACAGT-CCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGTCACTATATTGAGGAAGGTACTGGTGgtaagcaggataataaggggggggtctagacacatccctaagtacatgaa Alignment from Pairagon G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG Ggtaaagctcttggttacgagacctaaagatatcctacttcaatctgtagacatttgttatatgcaaatacaacactccgacag----------------------------------TCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGTCACTATATTGAGGAAGGTACTGGTGgtaagcaggataataaggggggggtctagacacatccctaagtacatgaa Alignment from Exonerate_protein2genome G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaaagctcttggttacgagacctaaagatatcctacttcaatctgtagACATTTGTTATATGCAAATACAACACTCCGACAGTCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGTCACTATATTGAGGAAGGTACTGGTGgtaagcaggataataaggggggggtctagacacatccctaagtacatgaa Alignment from Exonerate_coding2genome G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaaagctcttggttacgagacctaaagatatcctacttcaatctgtagACATTTGTTATATGCAAATACAACACTCCGACAGTCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGTCACTATATTGAGGAAGGTACTGGTGgtaagcaggataataaggggggggtctagacacatccctaagtacatgaa Alignment from GeneWise G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaaagctcttggttacgagacctaaagatatcctacttcaatctgtagACATTTGTTATATGCAAATACAACACTCCGACAGTCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGTCACTATATTGAGGAAGGTACTGGTGgtaagcaggataataaggggggggtctagacacatccctaagtacatgaa #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCAGAG-CTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tgagaattgccctgatctaactggatagtgtttctttttctcttctccaggaATCTCTTTGGAGGTCTCAGAACCTCA-GTTCCAGGACCTTGTACAACTCATC------TATTGCCGTACCaggtgagcctgtctgtgcataactgctgacccgtcaagccaacttggcatgt Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tgagaattgccctgatctaactggatagtgtttctttttctcttctccaggaATCTCTTTGGAGGTCTCAGAACCTCAGTTCCAGGACCTTGTACAACTCATC------TATTGCCGTACCaggtgagcctgtctgtgcataactgctgacccgtcaagccaacttggcatgt Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgagaattgccctgatctaactggatagtgtttctttttctcttctccagGAATCTCTTTGGAGGTCTCAGAACCTCAGTTCCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagcctgtctgtgcataactgctgacccgtcaagccaacttggcatgt Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgagaattgccctgatctaactggatagtgtttctttttctcttctccagGAATCTCTTTGGAGGTCTCAGAACCTCAGTTCCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagcctgtctgtgcataactgctgacccgtcaagccaacttggcatgt Alignment from Pairagon GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgagaattgccctgatctaactggatagtgtttctttttctcttctccagGAATCTCTTTGGAGGTCTCAGAACCTCAGTTCCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagcctgtctgtgcataactgctgacccgtcaagccaacttggcatgt Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgagaattgccctgatctaactggatagtgtttctttttctcttctccagGAATCTCTTTGGAGGTCTCAGAACCTCAGTTCCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagcctgtctgtgcataactgctgacccgtcaagccaacttggcatgt Alignment from Exonerate_coding2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgagaattgccctgatctaactggatagtgtttctttttctcttctccagGAATCTCTTTGGAGGTCTCAGAACCTCAGTTCCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagcctgtctgtgcataactgctgacccgtcaagccaacttggcatgt Alignment from GeneWise GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgagaattgccctgatctaactggatagtgtttctttttctcttctccagGAATCTCTTTGGAGGTCTCAGAACCTCAGTTCCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagcctgtctgtgcataactgctgacccgtcaagccaacttggcatgt #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAGGCAGCCACCCACAAA-GAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctgatggctttcccccaggcctcctctgacttctgtttgcaggGCAATTCATCAGGCAGCCACCCACAAACGAGC-AGAAGCTATCTCCCATCTGGGGATGggtgagcatccccgtctgttacataaaacatactggggttacttggttaag Alignment from CESAR aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctgatggctttcccccaggcctcctctgacttctgtttgcaggGCAATTCATCAGGCAGCCACCCACAAACGAGCAGAAGCTATCTCCCATCTGGGGATGggtgagcatccccgtctgttacataaaacatactggggttacttggttaag Alignment from Spaln_aa2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctgatggctttcccccaggcctcctctgacttctgtttgcagGGCAATTCATCAGGCAGCCACCCACAAACGAGCAGAAGCTATCTCCCATCTGGGGATGGgtgagcatccccgtctgttacataaaacatactggggttacttggttaag Alignment from Spaln_nt2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctgatggctttcccccaggcctcctctgacttctgtttgcagGGCAATTCATCAGGCAGCCACCCACAAACGAGCAGAAGCTATCTCCCATCTGGGGATGGgtgagcatccccgtctgttacataaaacatactggggttacttggttaag Alignment from Pairagon AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctgatggctttcccccaggcctcctctgacttctgtttgcagGGCAATTCATCAGGCAGCCACCCACAAACGAGCAGAAGCTATCTCCCATCTGGGGATGGgtgagcatccccgtctgttacataaaacatactggggttacttggttaag Alignment from Exonerate_protein2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctgatggctttcccccaggcctcctctgacttctgtttgcagGGCAATTCATCAGGCAGCCACCCACAAACGAGCAGAAGCTATCTCCCATCTGGGGATGGgtgagcatccccgtctgttacataaaacatactggggttacttggttaag Alignment from Exonerate_coding2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctgatggctttcccccaggcctcctctgacttctgtttgcagGGCAATTCATCAGGCAGCCACCCACAAACGAGCAGAAGCTATCTCCCATCTGGGGATGGgtgagcatccccgtctgttacataaaacatactggggttacttggttaag Alignment from GeneWise AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctgatggctttcccccaggcctcctctgacttctgtttgcagGGCAATTCATCAGGCAGCCACCCACAAACGAGCAGAAGCTATCTCCCATCTGGGGATGGgtgagcatccccgtctgttacataaaacatactggggttacttggttaag #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTG-AGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcaggaGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTACAGTCTTA-TTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcaggaGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTACAGTCTTATTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTACAGTCTTATTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG---AGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTACAGTCTTATTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTACAGTCTTATTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGgtgagggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTACAGTCTTATTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCA---Ggtgagggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTACAGTCTTATTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCA---Ggtgagggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTACAGTCTTATTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt #### Rpp30_ID7089_9 --> 0 - 2 Original Alignment CCTTTGGAAATA-AGAGGACCATATGACGTGGCAAACtt tgtgaacaagctgtgtgctggacagggaaactgcttactcttggttacagCCCCTGGAAATACCGAGGAC-GTATGATGTGGCCAATctgtaaatcattaggtataggctcagggtcattagtatgtttttcggggtag Alignment from CESAR CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACtt tgtgaacaagctgtgtgctggacagggaaactgcttactcttggttacagCCCCTGGAAATACCGAGGACGTATGATGTGGCCAATctgtaaatcattaggtataggctcagggtcattagtatgtttttcggggtag Alignment from Spaln_aa2Genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT tgtgaacaagctgtgtgctggacagggaaactgcttactcttggttacagCCCCTGGAAATACCGAGGACGTATGATGTGGCCAATCTgtaaatcattaggtataggctcagggtcattagtatgtttttcggggtag Alignment from Spaln_nt2Genome CCTTTGGAAATAA-GAGGACCATATGACGTGGCAAACTT tgtgaacaagctgtgtgctggacagggaaactgcttactcttggttacagCCCCTGGAAATACCGAGGA-CGTATGATGTGGCCAATCTgtaaatcattaggtataggctcagggtcattagtatgtttttcggggtag Alignment from Pairagon CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT tgtgaacaagctgtgtgctggacagggaaactgcttactcttggttacagCCCCTGGAAATACCGAGGACGTATGATGTGGCCAATCTgtaaatcattaggtataggctcagggtcattagtatgtttttcggggtag Alignment from Exonerate_protein2genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT tgtgaacaagctgtgtgctggacagggaaactgcttactcttggttacagCCCCTGGAAATACCGAGGACGTATGATGTGGCCAATCTgtaaatcattaggtataggctcagggtcattagtatgtttttcggggtag Alignment from Exonerate_coding2genome tgtgaacaagctgtgtgctggacagggaaactgcttactcttggttacagcccctggaaataccgaggacgtatgatgtggccaatctgtaaatcattaggtataggctcagggtcattagtatgtttttcggggtag Alignment from GeneWise AATTCTGTCCAGTGCTGCAGAAAGGCCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT tgtgaacaagctgtgtgctggacagGGAAACTGCTTACTCTTGGTTACAGCCCCTGGAAATACCGAGGACGTATGATGTGGCCAATCTgtaaatcattaggtataggctcagggtcattagtatgtttttcggggtag #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGC-TTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag ggacggggttgtgccacctggctttactgttcgattaccttcctttccagAGTTTTATGTATGTGGCGCCTTTTGTCCTAGACAGCATCAAAGAAGGTCTTTTCAT-CCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCCATCaggtgactggcagggcagataaatgtctagactgtgactttcaaacatgcac Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag ggacggggttgtgccacctggctttactgttcgattaccttcctttccagAGTTTTATGTATGTGGCGCCTTTTGTCCTAGACAGCATCAAAGAAGGTCTTTTCATCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCCATCaggtgactggcagggcagataaatgtctagactgtgactttcaaacatgcac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG ggacggggttgtgccacctggctttactgttcgattaccttcctttccagAGTTTTATGTATGTGGCGCCTTTTGTCCTAGACAGCATCAAAGAAGGTCTTTTCATCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCCATCAGgtgactggcagggcagataaatgtctagactgtgactttcaaacatgcac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG ggacggggttgtgccacctggctttactgttcgattaccttcctttccagAGTTTTATGTATGTGGCGCCTTTTGTCCTAGACAGCATCAAAGAAGGTCTTTTCATCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCCATCAGgtgactggcagggcagataaatgtctagactgtgactttcaaacatgcac Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG ggacggggttgtgccacctggctttactgttcgattaccttcctttccagAGTTTTATGTATGTGGCGCCTTTTGTCCTAGACAGCATCAAAGAAGGTCTTTTCATCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCCATCAGgtgactggcagggcagataaatgtctagactgtgactttcaaacatgcac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG ggacggggttgtgccacctggctttactgttcgattaccttcctttccagAGTTTTATGTATGTGGCGCCTTTTGTCCTAGACAGCATCAAAGAAGGTCTTTTCATCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCCATCAGgtgactggcagggcagataaatgtctagactgtgactttcaaacatgcac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG ggacggggttgtgccacctggctttactgttcgattaccttcctttccagAGTTTTATGTATGTGGCGCCTTTTGTCCTAGACAGCATCAAAGAAGGTCTTTTCATCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCCATCAGgtgactggcagggcagataaatgtctagactgtgactttcaaacatgcac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG ggacggggttgtgccacctggctttactgttcgattaccttcctttccagAGTTTTATGTATGTGGCGCCTTTTGTCCTAGACAGCATCAAAGAAGGTCTTTTCATCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCCATCAGgtgactggcagggcagataaatgtctagactgtgactttcaaacatgcac #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCAT-CTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg gataccttgtgtagtaggtattaagctccttctgctttttccacatgtagtTTCTACCTTGCAGAGATCACTTTGGCACTAGGCCATCCTCC-TTTCCATAGTATCATTTACCGTGATCACAAGCCAGGAAACATAATGCTCACCAGTCAGggtaggtgagatgttaacatccctgtgtgttaaacctagttttgccagtgt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg gataccttgtgtagtaggtattaagctccttctgctttttccacatgtagtTTCTACCTTGCAGAGATCACTTTGGCACTAGGCCATCCTCCTTTCCATAGTATCATTTACCGTGATCACAAGCCAGGAAACATAATGCTCACCAGTCAGggtaggtgagatgttaacatccctgtgtgttaaacctagttttgccagtgt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gataccttgtgtagtaggtattaagctccttctgctttttccacatgtagTTTCTACCTTGCAGAGATCACTTTGGCACTAGGCCATCCTCCTTTCCATAGTATCATTTACCGTGATCACAAGCCAGGAAACATAATGCTCACCAGTCAGGgtaggtgagatgttaacatccctgtgtgttaaacctagttttgccagtgt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gataccttgtgtagtaggtattaagctccttctgctttttccacatgtagTTTCTACCTTGCAGAGATCACTTTGGCACTAGGCCATCCTCCTTTCCATAGTATCATTTACCGTGATCACAAGCCAGGAAACATAATGCTCACCAGTCAGGgtaggtgagatgttaacatccctgtgtgttaaacctagttttgccagtgt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gataccttgtgtagtaggtattaagctccttctgctttttccacatgtagTTTCTACCTTGCAGAGATCACTTTGGCACTAGGCCATCCTCCTTTCCATAGTATCATTTACCGTGATCACAAGCCAGGAAACATAATGCTCACCAGTCAGGgtaggtgagatgttaacatccctgtgtgttaaacctagttttgccagtgt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gataccttgtgtagtaggtattaagctccttctgctttttccacatgtagTTTCTACCTTGCAGAGATCACTTTGGCACTAGGCCATCCTCCTTTCCATAGTATCATTTACCGTGATCACAAGCCAGGAAACATAATGCTCACCAGTCAGGgtaggtgagatgttaacatccctgtgtgttaaacctagttttgccagtgt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gataccttgtgtagtaggtattaagctccttctgctttttccacatgtagTTTCTACCTTGCAGAGATCACTTTGGCACTAGGCCATCCTCCTTTCCATAGTATCATTTACCGTGATCACAAGCCAGGAAACATAATGCTCACCAGTCAGGgtaggtgagatgttaacatccctgtgtgttaaacctagttttgccagtgt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gataccttgtgtagtaggtattaagctccttctgctttttccacatgtagTTTCTACCTTGCAGAGATCACTTTGGCACTAGGCCATCCTCCTTTCCATAGTATCATTTACCGTGATCACAAGCCAGGAAACATAATGCTCACCAGTCAGGgtaggtgagatgttaacatccctgtgtgttaaacctagttttgccagtgt #### Rps6kb2_ID376_6 --> 2 - 2 Original Alignment gtGGTGAGCTCTTCACACATCTT-GAGCGAGAAGGCATCTTCCTGGAAGACACAGCCtg aggctaaatttgctgatgaagtcctcagcactttaaaataatctttccagttGGTGAGCTTTTCACACATCTACGAACGGGAAG-CATATTTCTGGAAGACACAGCCtggtaagtaagtctgcaggataccttgtgtagtaggtattaagctcctctgt Alignment from CESAR gtGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCtg aggctaaatttgctgatgaagtcctcagcactttaaaataatctttccagttGGTGAGCTTTTCACACATCTACGAACGGGAAGCATATTTCTGGAAGACACAGCCtggtaagtaagtctgcaggataccttgtgtagtaggtattaagctccttctg Alignment from Spaln_aa2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aggctaaatttgctgatgaagtcctcagcactttaaaataatctttccagTTGGTGAGCTTTTCACACATCTACGAACGGGAAGCATATTTCTGGAAGACACAGCCTGgtaagtaagtctgcaggataccttgtgtagtaggtattaagctcctctgt Alignment from Spaln_nt2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aggctaaatttgctgatgaagtcctcagcactttaaaataatctttccagTTGGTGAGCTTTTCACACATCTACGAACGGGAAGCATATTTCTGGAAGACACAGCCTGgtaagtaagtctgcaggataccttgtgtagtaggtattaagctcctctgt Alignment from Pairagon GTGGTGAGCTCTTCACACATCT-TGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aggctaaatttgctgatgaagtcctcagcactttaaaataatctttccagTTGGTGAGCTTTTCACACATCTACGAACGGGAA-GCATATTTCTGGAAGACACAGCCTGgtaagtaagtctgcaggataccttgtgtagtaggtattaagctcctctgt Alignment from Exonerate_protein2genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aggctaaatttgctgatgaagtcctcagcactttaaaataatctttccagTTGGTGAGCTTTTCACACATCTACGAACGGGAAGCATATTTCTGGAAGACACAGCCTGgtaagtaagtctgcaggataccttgtgtagtaggtattaagctcctctgt Alignment from Exonerate_coding2genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aggctaaatttgctgatgaagtcctcagcactttaaaataatctttccagTTGGTGAGCTTTTCACACATCTACGAACGGGAAGCATATTTCTGGAAGACACAGCCTGgtaagtaagtctgcaggataccttgtgtagtaggtattaagctcctctgt Alignment from GeneWise GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aggctaaatttgctgatgaagtcctcagcactttaaaataatctttccagTTGGTGAGCTTTTCACACATCTACGAACGGGAAGCATATTTCTGGAAGACACAGCCTGgtaagtaagtctgcaggataccttgtgtagtaggtattaagctcctctgt #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGT-GTACTGGGCAAGGGGGGCTATGGCAAG gtgtgtatactcccctaaattgtctccctctttctggaaactctccacaggACAGTGGGACACTATGACGAAGTCGAATTAACAGAGAGA------AATCTTGACCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTCAGTCGTCCTGG-CAAAGGAGGTTATGGAAAGgtgagttatctcacccctcccaatgacatcagctctagtgcaagtgtaag Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gtgtgtatactcccctaaattgtctccctctttctggaaactctccacaggACAGTGGGACACTATGACGAAGTCGAATTAACAGAGAGA------AATCTTGACCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTCAGTCGTCCTGGCAAAGGAGGTTATGGAAAGgtgagttatctcacccctcccaatgacatcagctctagtgcaagtgtaag Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gtgtgtatactcccctaaattgtctccctctttctggaaactctccacagGACAGTGGGACACTATGACGAAGTCGAATTAACAGAGAGA------AATCTTGACCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTCAGTCGTCCTGGCAAAGGAGGTTATGGAAAGgtgagttatctcacccctcccaatgacatcagctctagtgcaagtgtaag Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gtgtgtatactcccctaaattgtctccctctttctggaaactctccacagGACAGTGGGACACTATGACGAAGTCGAATTAACAGAGAG------AAATCTTGACCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTCAGTCGTCCTGGCAAAGGAGGTTATGGAAAGgtgagttatctcacccctcccaatgacatcagctctagtgcaagtgtaag Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gtgtgtatactcccctaaattgtctccctctttctggaaactctccacagGACAGTGGGACACTATGACGAAGTCGAATTAACAGAGAG------AAATCTTGACCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTCAGTCGTCCTGGCAAAGGAGGTTATGGAAAGgtgagttatctcacccctcccaatgacatcagctctagtgcaagtgtaag Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gtgtgtatactcccctaaattgtctccctctttctggaaactctccacagGACAGTGGGACACTATGACGAAGTCGAATTAACAGAGAGA------AATCTTGACCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTCAGTCGTCCTGGCAAAGGAGGTTATGGAAAGgtgagttatctcacccctcccaatgacatcagctctagtgcaagtgtaag Alignment from Exonerate_coding2genome GCTGCTGGCCTGGAGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gtgtgtatactcccctaaattgtctccctctttctgGAAACTCTCCACAGGACAGTGGGACACTATGACGAAGTCGAATTAACAGAGAGA------AATCTTGACCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTCAGTCGTCCTGGCAAAGGAGGTTATGGAAAGgtgagttatctcacccctcccaatgacatcagctctagtgcaagtgtaag Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gtgtgtatactcccctaaattgtctccctctttctggaaactctccacagGACAGTGGGACACTATGACGAAGTCGAATTAACAGAGAGA------AATCTTGACCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTCAGTCGTCCTGGCAAAGGAGGTTATGGAAAGgtgagttatctcacccctcccaatgacatcagctctagtgcaagtgtaag #### Rrp12_ID8297_26 --> 0 - 2 Original Alignment ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATG-AAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg taatgatggatggcctaggtggatagtgtttatatggaattatttttcagATGGAAGCTATAGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGCAAGCTCC-GAATCTGTTCATCAAGTTCACACGCAAGTTTgggtaagccaaaagtagagggagaatggaacatggtgtatctgcagagtcct Alignment from CESAR ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg taatgatggatggcctaggtggatagtgtttatatggaattatttttcagATGGAAGCTATAGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGCAAGCTCCGAATCTGTTCATCAAGTTCACACGCAAGTTTgggtaagccaaaagtagagggagaatggaacatggtgtatctgcagagtcct Alignment from Spaln_aa2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatggcctaggtggatagtgtttatatggaattatttttcagATGGAAGCTATAGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGCAAGCTCCGAATCTGTTCATCAAGTTCACACGCAAGTTTGGgtaagccaaaagtagagggagaatggaacatggtgtatctgcagagtcct Alignment from Spaln_nt2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatggcctaggtggatagtgtttatatggaattatttttcagATGGAAGCTATAGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGCAAGCTCCGAATCTGTTCATCAAGTTCACACGCAAGTTTGGgtaagccaaaagtagagggagaatggaacatggtgtatctgcagagtcct Alignment from Pairagon ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatggcctaggtggatagtgtttatatggaattatttttcagATGGAAGCTATAGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGCAAGCTCCGAATCTGTTCATCAAGTTCACACGCAAGTTTGGgtaagccaaaagtagagggagaatggaacatggtgtatctgcagagtcct Alignment from Exonerate_protein2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatggcctaggtggatagtgtttatatggaattatttttcagATGGAAGCTATAGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGCAAGCTCCGAATCTGTTCATCAAGTTCACACGCAAGTTTGGgtaagccaaaagtagagggagaatggaacatggtgtatctgcagagtcct Alignment from Exonerate_coding2genome taatgatggatggcctaggtggatagtgtttatatggaattatttttcagatggaagctatagggaaactgtcagatgacatgcgacggcacttccggatgcaagctccgaatctgttcatcaagttcacacgcaagtttgggtaagccaaaagtagagggagaatggaacatggtgtatctgcagagtcct Alignment from GeneWise ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatggcctaggtggatagtgtttatatggaattatttttcagATGGAAGCTATAGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGCAAGCTCCGAATCTGTTCATCAAGTTCACACGCAAGTTTGGgtaagccaaaagtagagggagaatggaacatggtgtatctgcagagtcct #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCC-ATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgctgtcctgaagtgctttgtgctttttcagaTTGTCTGTT------------GTAGCACTGGCTCCTTATTCAGATGAGGCTGCTCAGTA-TAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtgctttaaccctgtctccagtcatggaataaatcgcccaggtttcacac Alignment from CESAR aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgctgtcctgaagtgctttgtgctttttcagaTTGTCT------------GTTGTAGCACTGGCTCCTTATTCAGATGAGGCTGCTCAGTATAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtgctttaaccctgtctccagtcatggaataaatcgcccaggtttcacac Alignment from Spaln_aa2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgctgtcctgaagtgctttgtgctttttcagATTGTCT------------GTTGTAGCACTGGCTCCTTATTCAGATGAGGCTGCTCAGTATAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtgctttaaccctgtctccagtcatggaataaatcgcccaggtttcacac Alignment from Spaln_nt2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgctgtcctgaagtgctttgtgctttttcagATTGTCT------------GTTGTAGCACTGGCTCCTTATTCAGATGAGGCTGCTCAGTATAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtgctttaaccctgtctccagtcatggaataaatcgcccaggtttcacac Alignment from Pairagon ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAG--TAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgctgtcctgaagtgctttgtgctttttcagATTGTCT------------GTTGTAGCACTGGCTCCTTATTCAGATGAGGCTGC--TCAGTATAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtgctttaaccctgtctccagtcatggaataaatcgcccaggtttcacac Alignment from Exonerate_protein2genome CCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgctgtcctgaagtgctttgtgctttttcagATTGTCT---GTTGTAGCACTGGCTCCTTATTCAGATGAGGCTGCTCAGTATAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtgctttaaccctgtctccagtcatggaataaatcgcccaggtttcacac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgctgtcctgaagtgctttgtgctttttcagATTGTCTGTT------------GTAGCACTGGCTCCTTATTCAGATGAGGCTGCTCAGTATAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtgctttaaccctgtctccagtcatggaataaatcgcccaggtttcacac #### Rrp12_ID8307_16 --> 2 - 0 Original Alignment caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAG-ATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGCATT---G-TACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from CESAR caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAG---CATTGTACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from Spaln_aa2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAG---CATTGTACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from Spaln_nt2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCCAAG---CATTGTACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from Pairagon CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGC---------------------------------------------------- ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCCAAG---CATTGTACACTCCAGTGGCAAGTAGAGGCCAATTGGGAACTGATGAGGGCTGAGCACGTTTGTGAAGTATT Alignment from Exonerate_protein2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAG---CATTGTACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from Exonerate_coding2genome ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagcaatggatctagctcaagccacagtggagtccaagcattgtacactccagtggcaagtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from GeneWise CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAG---CATTGTACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt #### Rrp12_ID8308_15 --> 1 - 1 Original Alignment gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACC-ACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAg ccaaaacatcgactgagctaactacacccgattcctttccttaattgcaggGAAAATTTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGCTTCTTCACCCACTTATT-CTTGCCCCTAGCTACAACCCTTAAGAGAAAAggtgagcaggttttctttttataaaatacaggtcacagaaggaatatcagc Alignment from CESAR gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAg ccaaaacatcgactgagctaactacacccgattcctttccttaattgcaggGAAAATTTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGCTTCTTCACCCACTTATTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAggtgagcaggttttctttttataaaatacaggtcacagaaggaatatcagc Alignment from Spaln_aa2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ccaaaacatcgactgagctaactacacccgattcctttccttaattgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGCTTCTTCACCCACTTATTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtgagcaggttttctttttataaaatacaggtcacagaaggaatatcagc Alignment from Spaln_nt2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ccaaaacatcgactgagctaactacacccgattcctttccttaattgcagGGAAAATTTGGACTT---TCAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGCTTCTTCACCCACTTATTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtgagcaggttttctttttataaaatacaggtcacagaaggaatatcagc Alignment from Pairagon GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ccaaaacatcgactgagctaactacacccgattcctttccttaattgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGCTTCTTCACCCACTTATTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtgagcaggttttctttttataaaatacaggtcacagaaggaatatcagc Alignment from Exonerate_protein2genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ccaaaacatcgactgagctaactacacccgattcctttccttaattgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGCTTCTTCACCCACTTATTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtgagcaggttttctttttataaaatacaggtcacagaaggaatatcagc Alignment from Exonerate_coding2genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAGCAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGAT ccaaaacatcgactgagctaactacacccgattcctttccttaattgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGCTTCTTCACCCACTTATTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGGTGAGCAGGTTTTCTTTTTATAAAATACAGGTCACAGAAGGAATATCAGC Alignment from GeneWise GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ccaaaacatcgactgagctaactacacccgattcctttccttaattgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGCTTCTTCACCCACTTATTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtgagcaggttttctttttataaaatacaggtcacagaaggaatatcagc #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAG-GGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcatgtaccctccaagtttttactgttcccttagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGCGGCTCAG-CAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaacactgaagccacgtggctagtctccattcctgtgaaatctgatatg Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcatgtaccctccaagtttttactgttcccttagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGCGGCTCAGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaacactgaagccacgtggctagtctccattcctgtgaaatctgatatg Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcatgtaccctccaagtttttactgttcccttagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGCGGCTCAGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaacactgaagccacgtggctagtctccattcctgtgaaatctgatatg Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcatgtaccctccaagtttttactgttcccttagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGCGGCTCAGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaacactgaagccacgtggctagtctccattcctgtgaaatctgatatg Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAG-GGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcatgtaccctccaagtttttactgttcccttagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGCGGCTCA-GCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaacactgaagccacgtggctagtctccattcctgtgaaatctgatatg Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcatgtaccctccaagtttttactgttcccttagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGCGGCTCAGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaacactgaagccacgtggctagtctccattcctgtgaaatctgatatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcatgtaccctccaagtttttactgttcccttagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGCGGCTCAGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaacactgaagccacgtggctagtctccattcctgtgaaatctgatatg #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat agggctcaagactttcatgttcccaggattttgctgtttgccttggataggaTTGCTTGAAACCACACGTACAAAAGG-TGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCAGTGTACTGCATAGGGGATAAGatgtaagatttatcaaaaggtgtgatagcaactgccatgattctggagatcc Alignment from CESAR gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat agggctcaagactttcatgttcccaggattttgctgtttgccttggataggaTTGCTTGAAACCACACGTACAAAAGGTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCAGTGTACTGCATAGGGGATAAGatgtaagatttatcaaaaggtgtgatagcaactgccatgattctggagatcc Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggattttgctgtttgccttggatagGATTGCTTGAAACCACACGTACAAAAGGTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCAGTGTACTGCATAGGGGATAAGATgtaagatttatcaaaaggtgtgatagcaactgccatgattctggagatcc Alignment from Spaln_nt2Genome GACTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggattttgctgtttgccttggatagGATTGCTTGAAACCACACGTACAAAAGGT-GCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCAGTGTACTGCATAGGGGATAAGATgtaagatttatcaaaaggtgtgatagcaactgccatgattctggagatcc Alignment from Pairagon GACTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggattttgctgtttgccttggatagGATTGCTTGAAACCACACGTACAAAAGGT-GCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCAGTGTACTGCATAGGGGATAAGATgtaagatttatcaaaaggtgtgatagcaactgccatgattctggagatcc Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggattttgctgtttgccttggatagGATTGCTTGAAACCACACGTACAAAAGGTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCAGTGTACTGCATAGGGGATAAGATgtaagatttatcaaaaggtgtgatagcaactgccatgattctggagatcc Alignment from Exonerate_coding2genome agggctcaagactttcatgttcccaggattttgctgtttgccttggataggattgcttgaaaccacacgtacaaaaggtgcctgggttgaagctcccaataggaccctaccttcagcagtgtactgcataggggataagatgtaagatttatcaaaaggtgtgatagcaactgccatgattctggagatcc Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggattttgctgtttgccttggatagGATTGCTTGAAACCACACGTACAAAAGGTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCAGTGTACTGCATAGGGGATAAGATgtaagatttatcaaaaggtgtgatagcaactgccatgattctggagatcc #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGG-AAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGCAGGGGAA-ATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGCAGGGGAAATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGCAGGGGAAATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGCAGGGGAAATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGCAGGGGAAATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGCAGGGGAAATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Exonerate_coding2genome tacttacagattccatactgcctataactcactcctggtctcttgggcaggtgctggagattgtgaagaaactagagtcccatcagcatggttgggaggagggagaggacccaaagaggcaggggaaatcagttttcaatgccacatcagaattttgctgtatactaggggaatcccccacatatgagttggtgggtaaccgtgaagggcaggaggagttgatggtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGCAGGGGAAATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCT-CAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG gtaagcctagtaagtctgtgagaataagttctacccctacccttctgcagCAGAGACCTTGTTCAATTCTAGCTAAATATGATGAAGAATTAGGCGGTGAGCGACCACATTCCTGCCGTCTTAAGCACGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACCAAGCTTCGACTACCAGCCCCAATCTCTAA-TTTAATGGGCCCCAGACTTAGTACTCAGTATCTTAGTCCTGAAGAGATGgtatgtcagtgggttatggtcatcaattcagcccacagccaatccaagca Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG gtaggtctagtaagtctgtgagaataagttctacccctacccttctgcagCAGAGACCTTGTTCAATTCTAGCTAAATATGATGAAGAATTAGGCGGTGAGCGACCACATTCCTGCCGTCTTAAGCACGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACCAAGCTTCGACTACCAGCCCCAATCTCTAATTTAATGGGCCCCAGACTTAGTACTCAGTATCTTAGTCCTGAAGAGATGgtatgtcagtgggttatggtcatcaattcagcccacagccaatccaagca Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG gtaagcctagtaagtctgtgagaataagttctacccctacccttctgcagCAGAGACCTTGTTCAATTCTAGCTAAATATGATGAAGAATTAGGCGGTGAGCGACCACATTCCTGCCGTCTTAAGCACGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACCAAGCTTCGACTACCAGCCCCAATCTCTAATTTAATGGGCCCCAGACTTAGTACTCAGTATCTTAGTCCTGAAGAGATGgtatgtcagtgggttatggtcatcaattcagcccacagccaatccaagca Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGC-AGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG gtaagcctagtaagtctgtgagaataagttctacccctacccttctgcagCAGAGACCTTGTTCAATTCTAGCTAAATATGATGAAGAATTAGGCGGTGAGCGACCACATTCCTGCCGTCTTAAGCACGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACCAAGCTTCGACTACCAGCCCCAATCTCT-AATTTAATGGGCCCCAGACTTAGTACTCAGTATCTTAGTCCTGAAGAGATGgtatgtcagtgggttatggtcatcaattcagcccacagccaatccaagca Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTAC-----------------------------GGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG gtaagcctagtaagtctgtgagaataagttctacccctacccttctgcagCAGAGACCTTGTTCAATTCTAGCTAAATATGATGAAGAATTAGGCGGTGAGCGACCACATTCCTGCCGTCTTAAGCACGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACCAAGCTTCGACTACCAGCCCCAATCTCTAATTTAATGGGCCCCAGACTTAGTA-----------------------------CTCAGTATCTTAGTCCTGAAGAGATGgtatgtcagtgggttatggtcatcaattcagcccacagccaatccaagca Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG gtaagcctagtaagtctgtgagaataagttctacccctacccttctgcagCAGAGACCTTGTTCAATTCTAGCTAAATATGATGAAGAATTAGGCGGTGAGCGACCACATTCCTGCCGTCTTAAGCACGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACCAAGCTTCGACTACCAGCCCCAATCTCTAATTTAATGGGCCCCAGACTTAGTACTCAGTATCTTAGTCCTGAAGAGATGgtatgtcagtgggttatggtcatcaattcagcccacagccaatccaagca Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG gtaagcctagtaagtctgtgagaataagttctacccctacccttctgcagCAGAGACCTTGTTCAATTCTAGCTAAATATGATGAAGAATTAGGCGGTGAGCGACCACATTCCTGCCGTCTTAAGCACGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACCAAGCTTCGACTACCAGCCCCAATCTCTAATTTAATGGGCCCCAGACTTAGTACTCAGTATCTTAGTCCTGAAGAGATGgtatgtcagtgggttatggtcatcaattcagcccacagccaatccaagca Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG gtaagcctagtaagtctgtgagaataagttctacccctacccttctgcagCAGAGACCTTGTTCAATTCTAGCTAAATATGATGAAGAATTAGGCGGTGAGCGACCACATTCCTGCCGTCTTAAGCACGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACCAAGCTTCGACTACCAGCCCCAATCTCTAATTTAATGGGCCCCAGACTTAGTACTCAGTATCTTAGTCCTGAAGAGATGgtatgtcagtgggttatggtcatcaattcagcccacagccaatccaagca #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTG-CTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccggctaccctcctcttccctcactttaggtGTACTCCAGGATGGAGAAGATGTGCCTGGTGA-CGTGAATATGGTGGACAAGGAGCGCGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATCTAGCACAGgtaggtctagtaagtctgtgagaataagtccttttgctctggcctggcag Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccggctaccctcctcttccctcactttaggtGTACTCCAGGATGGAGAAGATGTGCCTGGTGACGTGAATATGGTGGACAAGGAGCGCGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATCTAGCACAGgtaggtctagtaagtctgtgagaataagttctacccctacccttctgcag Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccggctaccctcctcttccctcactttagGTGTACTCCAGGATGGAGAAGATGTGCCTGGTGACGTGAATATGGTGGACAAGGAGCGCGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATCTAGCACAGgtaggtctagtaagtctgtgagaataagtccttttgctctggcctggcag Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccggctaccctcctcttccctcactttagGTGTACTCCAGGATGGAGAAGATGTGCCTGGTGACGTGAATATGGTGGACAAGGAGCGCGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATCTAGCACAGgtaggtctagtaagtctgtgagaataagtccttttgctctggcctggcag Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTG-CTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccggctaccctcctcttccctcactttagGTGTACTCCAGGATGGAGAAGATGTGCCTGGTG-ACGTGAATATGGTGGACAAGGAGCGCGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATCTAGCACAGgtaggtctagtaagtctgtgagaataagtccttttgctctggcctggcag Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccggctaccctcctcttccctcactttagGTGTACTCCAGGATGGAGAAGATGTGCCTGGTGACGTGAATATGGTGGACAAGGAGCGCGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATCTAGCACAGgtaggtctagtaagtctgtgagaataagtccttttgctctggcctggcag Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccggctaccctcctcttccctcactttagGTGTACTCCAGGATGGAGAAGATGTGCCTGGTGACGTGAATATGGTGGACAAGGAGCGCGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATCTAGCACAGgtaggtctagtaagtctgtgagaataagtccttttgctctggcctggcag Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccggctaccctcctcttccctcactttagGTGTACTCCAGGATGGAGAAGATGTGCCTGGTGACGTGAATATGGTGGACAAGGAGCGCGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATGAGGGTGTGGATGATCTAGCACAGgtaggtctagtaagtctgtgagaataagtccttttgctctggcctggcag #### Sec31b_ID9028_24 --> 0 - 0 Original Alignment AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAG-AAGCTTTGCGAGGGGACA ttggtagtatggcccaaaatcaggatcttaaagttaactttgtttcctagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGCCTATATGAGCAAGC-TTGTGAGGGAACAgtgagtcctttgtacagtgaacccacagttatgcctaggacagttagccc Alignment from CESAR AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ttggtagtatggcccaaaatcaggatcttaaagttaactttgtttcctagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGCCTATATGAGCAAGCTTGTGAGGGAACAgtgagtcctttgtacagtgaacccacagttatgcctaggacagttagccc Alignment from Spaln_aa2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ttggtagtatggcccaaaatcaggatcttaaagttaactttgtttcctagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGCCTATATGAGCAAGCTTGTGAGGGAACAgtgagtcctttgtacagtgaacccacagttatgcctaggacagttagccc Alignment from Spaln_nt2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ttggtagtatggcccaaaatcaggatcttaaagttaactttgtttcctagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGCCTATATGAGCAAGCTTGTGAGGGAACAgtgagtcctttgtacagtgaacccacagttatgcctaggacagttagccc Alignment from Pairagon AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ttggtagtatggcccaaaatcaggatcttaaagttaactttgtttcctagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGCCTATATGAGCAAGCTTGTGAGGGAACAgtgagtcctttgtacagtgaacccacagttatgcctaggacagttagccc Alignment from Exonerate_protein2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ttggtagtatggcccaaaatcaggatcttaaagttaactttgtttcctagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGCCTATATGAGCAAGCTTGTGAGGGAACAgtgagtcctttgtacagtgaacccacagttatgcctaggacagttagccc Alignment from Exonerate_coding2genome ttggtagtatggcccaaaatcaggatcttaaagttaactttgtttcctagaaaacaaaaaaggaactagaggaggcagcacggcaccttgaatgcctatatgagcaagcttgtgagggaacagtgagtcctttgtacagtgaacccacagttatgcctaggacagttagccc Alignment from GeneWise AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ttggtagtatggcccaaaatcaggatcttaaagttaactttgtttcctagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGCCTATATGAGCAAGCTTGTGAGGGAACAgtgagtcctttgtacagtgaacccacagttatgcctaggacagttagccc #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGT-GCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG ttatatgttgtatgatccccggtagctaatgttcatctttcctcccacagCTGCCTGAAGCATTCATGACTCCTGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGATTCACAACAAGCCTTGCTTCCAAAACCATTAGTCTCCAGTCGCAATCT-ACCCCCTCCTGGAGCCCCCAGGGAATGTAGCTTGCAAgtaagcgaaagtctgcccctgccctaatttgcatttgaggtagcctgatc Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG ttatatgttgtatgatccccggtagctaatgttcatctttcctcccacagCTGCCTGAAGCATTCATGACTCCTGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGATTCACAACAAGCCTTGCTTCCAAAACCATTAGTCTCCAGTCGCAATCTACCCCCTCCTGGAGCCCCCAGGGAATGTAGCTTGCAAgtaagcgaaagtctgcccctgccctaatttgcatttgaggtagcctgatc Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG ttatatgttgtatgatccccggtagctaatgttcatctttcctcccacagCTGCCTGAAGCATTCATGACTCCTGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGATTCACAACAAGCCTTGCTTCCAAAACCATTAGTCTCCAGTCGCAATCTACCCCCTCCTGGAGCCCCCAGGGAATGTAGCTTGCAAgtaagcgaaagtctgcccctgccctaatttgcatttgaggtagcctgatc Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG ttatatgttgtatgatccccggtagctaatgttcatctttcctcccacagCTGCCTGAAGCATTCATGACTCCTGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGATTCACAACAAGCCTTGCTTCCAAAACCATTAGTCTCCAGTCGCAATCTACCCCCTCCTGGAGCCCCCAGGGAATGTAGCTTGCAAgtaagcgaaagtctgcccctgccctaatttgcatttgaggtagcctgatc Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG ttatatgttgtatgatccccggtagctaatgttcatctttcctcccacagCTGCCTGAAGCATTCATGACTCCTGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGATTCACAACAAGCCTTGCTTCCAAAACCATTAGTCTCCAGTCGCAATCTACCCCCTCCTGGAGCCCCCAGGGAATGTAGCTTGCAAgtaagcgaaagtctgcccctgccctaatttgcatttgaggtagcctgatc Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG ttatatgttgtatgatccccggtagctaatgttcatctttcctcccacagCTGCCTGAAGCATTCATGACTCCTGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGATTCACAACAAGCCTTGCTTCCAAAACCATTAGTCTCCAGTCGCAATCTACCCCCTCCTGGAGCCCCCAGGGAATGTAGCTTGCAAgtaagcgaaagtctgcccctgccctaatttgcatttgaggtagcctgatc Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG ttatatgttgtatgatccccggtagctaatgttcatctttcctcccacagCTGCCTGAAGCATTCATGACTCCTGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGATTCACAACAAGCCTTGCTTCCAAAACCATTAGTCTCCAGTCGCAATCTACCCCCTCCTGGAGCCCCCAGGGAATGTAGCTTGCAAgtaagcgaaagtctgcccctgccctaatttgcatttgaggtagcctgatc Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG ttatatgttgtatgatccccggtagctaatgttcatctttcctcccacagCTGCCTGAAGCATTCATGACTCCTGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGATTCACAACAAGCCTTGCTTCCAAAACCATTAGTCTCCAGTCGCAATCTACCCCCTCCTGGAGCCCCCAGGGAATGTAGCTTGCAAgtaagcgaaagtctgcccctgccctaatttgcatttgaggtagcctgatc #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACTAGT-TTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg tgtcctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTCTTTG-GGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTggtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg agacctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTCTTTGGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTggtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTCTTTGGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTCTTTGGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTCTTTGGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTCTTTGGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTCTTTGGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTCTTTGGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTG-AGAACTGAGGAGGCACCCATGCACTGGCTCAATg gtctcctagtagggcatgtcctatctccaggcttttcccttgtctttcagatGGTGGCCTGTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTAGACGGAGCCGACACCCACACTCTCTGCAGAA-TGAGGAAGCACCGATGCACTGGCTCAATggtgagtatagggtgctttcaaggggttggtgaaggggacagctctagtgt Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg gtctcctagtagggcatgtcctatctccaggcttttcccttgtctttcagatGGTGGCCTGTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTAGACGGAGCCGACACCCACACTCTCTGCAGAATGAGGAAGCACCGATGCACTGGCTCAATggtgagtatagggtgctttcaaggggttggtgaaggggacagctctagtgt Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG gtctcctagtagggcatgtcctatctccaggcttttcccttgtctttcagATGGTGGCCTGTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTAGACGGAGCCGACACCCACACTCTCTGCAGAATGAGGAAGCACCGATGCACTGGCTCAATGgtgagtatagggtgctttcaaggggttggtgaaggggacagctctagtgt Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG gtctcctagtagggcatgtcctatctccaggcttttcccttgtctttcagATGGTGGCCTGTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTAGACGGAGCCGACACCCACACTCTCTGCAGAATGAGGAAGCACCGATGCACTGGCTCAATGgtgagtatagggtgctttcaaggggttggtgaaggggacagctctagtgt Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG gtctcctagtagggcatgtcctatctccaggcttttcccttgtctttcagATGGTGGCCTGTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTAGACGGAGCCGACACCCACACTCTCTGCAGAATGAGGAAGCACCGATGCACTGGCTCAATGgtgagtatagggtgctttcaaggggttggtgaaggggacagctctagtgt Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG gtctcctagtagggcatgtcctatctccaggcttttcccttgtctttcagATGGTGGCCTGTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTAGACGGAGCCGACACCCACACTCTCTGCAGAATGAGGAAGCACCGATGCACTGGCTCAATGgtgagtatagggtgctttcaaggggttggtgaaggggacagctctagtgt Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG gtctcctagtagggcatgtcctatctccaggcttttcccttgtctttcagATGGTGGCCTGTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTAGACGGAGCCGACACCCACACTCTCTGCAGAATGAGGAAGCACCGATGCACTGGCTCAATGgtgagtatagggtgctttcaaggggttggtgaaggggacagctctagtgt Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG gtctcctagtagggcatgtcctatctccaggcttttcccttgtctttcagATGGTGGCCTGTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTAGACGGAGCCGACACCCACACTCTCTGCAGAATGAGGAAGCACCGATGCACTGGCTCAATGgtgagtatagggtgctttcaaggggttggtgaaggggacagctctagtgt #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGT-GGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaacctgagactgcttcttcttccaggAAAACACTGGAGGCTTCAGATATCTGCCGGCATGACTTGGCAGAGATTCATGCTGTTTTT---AGCCCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGAGGTCGGAGTAC-TCAACCCCAACCTGGCTTAgtaagaactcaaagtttggaccacactaatcgggacatagagagttaccc Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaacctgagactgcttcttcttccaggAAAACACTGGAGGCTTCAGATATCTGCCGGCATGACTTGGCAGAGATTCATGCTGTTTTT---AGCCCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGAGGTCGGAGTACTCAACCCCAACCTGGCTTAgtaagaactcaaagtttggaccacactaatcgggacatagagagttaccc Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaacctgagactgcttcttcttccagGAAAACACTGGAGGCTTCAGATATCTGCCGGCATGACTTGGCAGAGATTCATGCTGTTTTTAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGAGGTCGGAGTACTCAACCCCAACCTGGCTTAgtaagaactcaaagtttggaccacactaatcgggacatagagagttaccc Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaacctgagactgcttcttcttccagGAAAACACTGGAGGCTTCAGATATCTGCCGGCATGACTTGGCAGAGATTCATGCTGTTTTTA---GCCCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGAGGTCGGAGTACTCAACCCCAACCTGGCTTAgtaagaactcaaagtttggaccacactaatcgggacatagagagttaccc Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaacctgagactgcttcttcttccagGAAAACACTGGAGGCTTCAGATATCTGCCGGCATGACTTGGCAGAGATTCATGCTGTTTTTA---GCCCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGAGGTCGGAGTACTCAACCCCAACCTGGCTTAgtaagaactcaaagtttggaccacactaatcgggacatagagagttaccc Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaacctgagactgcttcttcttccagGAAAACACTGGAGGCTTCAGATATCTGCCGGCATGACTTGGCAGAGATTCATGCTGTTTTTAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGAGGTCGGAGTACTCAACCCCAACCTGGCTTAgtaagaactcaaagtttggaccacactaatcgggacatagagagttaccc Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaacctgagactgcttcttcttccagGAAAACACTGGAGGCTTCAGATATCTGCCGGCATGACTTGGCAGAGATTCATGCTGTTTTTAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGAGGTCGGAGTACTCAACCCCAACCTGGCTTAgtaagaactcaaagtttggaccacactaatcgggacatagagagttaccc Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaacctgagactgcttcttcttccagGAAAACACTGGAGGCTTCAGATATCTGCCGGCATGACTTGGCAGAGATTCATGCTGTTTTTAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGAGGTCGGAGTACTCAACCCCAACCTGGCTTAgtaagaactcaaagtttggaccacactaatcgggacatagagagttaccc #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCAC-ATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG acgcccaaccaccacccaatgaaagagttgtctctctgttcatgctgcagcaGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACCATCATTG-GGAGATACAAGTGGTCAGAGAGCCCCAGTCAGTAGACAATCTACTGATCTCACCAATGCAAgtatgttagtgttactatggtaagaatccccacttatttacccacaccta Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG acgcccaaccaccacccaatgaaagagttgtctctctgttcatgctgcagcaGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACCATCATTGGGAGATACAAGTGGTCAGAGAGCCCCAGTCAGTAGACAATCTACTGATCTCACCAATGCAAgtatgttagtgttactatggtaagaatccccacttatttacccacaccta Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG acgcccaaccaccacccaatgaaagagttgtctctctgttcatgctgcagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACCATCATTGGGAGATACAAGTGGTCAGAGAGCCCCAGTCAGTAGACAATCTACTGATCTCACCAATGCAAgtatgttagtgttactatggtaagaatccccacttatttacccacaccta Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG acgcccaaccaccacccaatgaaagagttgtctctctgttcatgctgcagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACCATCATTGGGAGATACAAGTGGTCAGAGAGCCCCAGTCAGTAGACAATCTACTGATCTCACCAATGCAAgtatgttagtgttactatggtaagaatccccacttatttacccacaccta Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCA-CATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG acgcccaaccaccacccaatgaaagagttgtctctctgttcatgctgcagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACCATCATTG-GGAGATACAAGTGGTCAGAGAGCCCCAGTCAGTAGACAATCTACTGATCTCACCAATGCAAgtatgttagtgttactatggtaagaatccccacttatttacccacaccta Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG acgcccaaccaccacccaatgaaagagttgtctctctgttcatgctgcagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACCATCATTGGGAGATACAAGTGGTCAGAGAGCCCCAGTCAGTAGACAATCTACTGATCTCACCAATGCAAgtatgttagtgttactatggtaagaatccccacttatttacccacaccta Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG acgcccaaccaccacccaatgaaagagttgtctctctgttcatgctgcagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACCATCATTGGGAGATACAAGTGGTCAGAGAGCCCCAGTCAGTAGACAATCTACTGATCTCACCAATGCAAgtatgttagtgttactatggtaagaatccccacttatttacccacaccta Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG acgcccaaccaccacccaatgaaagagttgtctctctgttcatgctgcagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACCATCATTGGGAGATACAAGTGGTCAGAGAGCCCCAGTCAGTAGACAATCTACTGATCTCACCAATGCAAgtatgttagtgttactatggtaagaatccccacttatttacccacaccta #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACA-CGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag tctagaaaaatttggacaaaagataggtaactcttccttctcctccccaggCCTCCAGCAATGCCGTGTGA-TGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTaggtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag tctagaaaaatttggacaaaagataggtaactcttccttctcctccccaggCCTCCAGCAATGCCGTGTGATGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTaggtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCCGTGTGATGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Spaln_nt2Genome GCCTCCAGCAACAC-GTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCCGTGTGA-TGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Pairagon GCCTCCAGCAACA-CGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCCGTGTGA-TGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCCGTGTGATGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCCGTGTGATGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCCGTGTGATGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATG-CAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccatgttttttgataaggatttctttttctttcctattagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAAGCCAGAATGATCTACACAAGATGCCAGC-TCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAA---GCCcggtgagaggaatgttgaagaaaatgcatgggcaggtataagttttaccgaa Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccatgttttttgataaggatttctttttctttcctattagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAAGCCAGAATGATCTACACAAGATGCCAGCTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCCcggtgagaggaatgttgaagaaaatgcatgggcaggtataagttttaccgaa Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccatgttttttgataaggatttctttttctttcctattagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAAGCCAGAATGATCTACACAAGATGCCAGCTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCCCGgtgagaggaatgttgaagaaaatgcatgggcaggtataagttttaccgaa Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccatgttttttgataaggatttctttttctttcctattagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAAGCCAGAATGATCTACACAAGATGCCAGCTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAG---CCCGgtgagaggaatgttgaagaaaatgcatgggcaggtataagttttaccgaa Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGA------ agccaaactgccatgttttttgataaggatttctttttctttcctattagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAAGCCAGAATGATCTACACAAGATGCCAGCTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCCCGgtgagaggaatgttgaagaaaatgcatgggcaggtataagttttaccgaa Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccatgttttttgataaggatttctttttctttcctattagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAAGCCAGAATGATCTACACAAGATGCCAGCTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCCCGgtgagaggaatgttgaagaaaatgcatgggcaggtataagttttaccgaa Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccatgttttttgataaggatttctttttctttcctattagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAAGCCAGAATGATCTACACAAGATGCCAGCTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCCCGgtgagaggaatgttgaagaaaatgcatgggcaggtataagttttaccgaa Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccatgttttttgataaggatttctttttctttcctattagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAAGCCAGAATGATCTACACAAGATGCCAGCTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCCCGgtgagaggaatgttgaagaaaatgcatgggcaggtataagttttaccgaa #### Sf1_ID1667_8 --> 1 - 2 Original Alignment gATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACT-ACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGag gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgtagaATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTCACTGTGTGTA-CAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGaggtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from CESAR gATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACT-ACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGag gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgtagaATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTCACTGTGTGTA-CAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGaggtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Spaln_aa2Genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgtagAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTCACTGTGTGTACAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Spaln_nt2Genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgtagAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTCACTGTGTGTACAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Pairagon -----------------------------------------------TAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACT-ACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG GTTTAAGTTACCGAAGGATCATGGAGTGCTGTGATTTTTGTGTTCCGTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTCACTGTGTGTA-CAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Exonerate_protein2genome TAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTCACTGTGTGTACAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Exonerate_coding2genome TAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTCACTGTGTGTACAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from GeneWise -------------------AATAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagTGCTGTGATTTTTGTGTTCCGTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTCACTGTGTGTACAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAG-CCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggggtcagacttgtctatgctaaaacagtgttttgtttttgtccctttagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGCGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCAC-TCCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCACCAATGggtatgcaagatgaccaagagcatttagggcttgagcaaatggcagacacc Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggggtcagacttgtctatgctaaaacagtgttttgtttttgtccctttagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGCGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACTCCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCACCAATGggtatgcaagatgaccaagagcatttagggcttgagcaaatggcagacacc Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctatgctaaaacagtgttttgtttttgtccctttagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGCGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACTCCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCACCAATGGgtatgcaagatgaccaagagcatttagggcttgagcaaatggcagacacc Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctatgctaaaacagtgttttgtttttgtccctttagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGCGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACTCCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCACCAATGGgtatgcaagatgaccaagagcatttagggcttgagcaaatggcagacacc Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctatgctaaaacagtgttttgtttttgtccctttagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGCGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACTCCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCACCAATGGgtatgcaagatgaccaagagcatttagggcttgagcaaatggcagacacc Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctatgctaaaacagtgttttgtttttgtccctttagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGCGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACTCCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCACCAATGGgtatgcaagatgaccaagagcatttagggcttgagcaaatggcagacacc Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctatgctaaaacagtgttttgtttttgtccctttagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGCGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACTCCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCACCAATGGgtatgcaagatgaccaagagcatttagggcttgagcaaatggcagacacc Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctatgctaaaacagtgttttgtttttgtccctttagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGCGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACTCCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCACCAATGGgtatgcaagatgaccaagagcatttagggcttgagcaaatggcagacacc #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAA-TCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagtttcagcaactcccctccctgaatgggtcctgtttgttctcgtagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGTGAGCTGGAACCTTCTGATGAAGAACTCCTCAG-AGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATaggtcggtaccaggctgtcccccatcagtcacctacctggcactgtgatgat Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagtttcagcaactcccctccctgaatgggtcctgtttgttctcgtagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGTGAGCTGGAACCTTCTGATGAAGAACTCCTCAGAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATaggtcggtaccaggctgtcccccatcagtcacctacctggcactgtgatgat Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcccctccctgaatgggtcctgtttgttctcgtagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGTGAGCTGGAACCTTCTGATGAAGAACTCCTCAGAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtcggtaccaggctgtcccccatcagtcacctacctggcactgtgatgat Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcccctccctgaatgggtcctgtttgttctcgtagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGTGAGCTGGAACCTTCTGATGAAGAACTCCTCAGAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtcggtaccaggctgtcccccatcagtcacctacctggcactgtgatgat Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAA-TCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcccctccctgaatgggtcctgtttgttctcgtagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGTGAGCTGGAACCTTCTGATGAAGAACTCCTCAG-AGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtcggtaccaggctgtcccccatcagtcacctacctggcactgtgatgat Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcccctccctgaatgggtcctgtttgttctcgtagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGTGAGCTGGAACCTTCTGATGAAGAACTCCTCAGAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtcggtaccaggctgtcccccatcagtcacctacctggcactgtgatgat Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcccctccctgaatgggtcctgtttgttctcgtagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGTGAGCTGGAACCTTCTGATGAAGAACTCCTCAGAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtcggtaccaggctgtcccccatcagtcacctacctggcactgtgatgat Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcccctccctgaatgggtcctgtttgttctcgtagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGTGAGCTGGAACCTTCTGATGAAGAACTCCTCAGAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtcggtaccaggctgtcccccatcagtcacctacctggcactgtgatgat #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGC-CGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgacacctaactatccttcctccatgacacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCCGTATGA-CCGATTTACGGTTGCAGAATTAAAGCAAgtactcagttttgggaaagtcaagccagctactccagctctggtcaacgt Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgacacctaactatccttcctccatgacacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCCGTATGACCGATTTACGGTTGCAGAATTAAAGCAAgtactcagttttgggaaagtcaagccagctactccagctctggtcaacgt Alignment from Spaln_aa2Genome AAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgacacctaactatccttcctccatgacacagaagaagAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCCGTATGACCGATTTACGGTTGCAGAATTAAAGCAAgtactcagttttgggaaagtcaagccagctactccagctctggtcaacgt Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCC-GAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgacacctaactatccttcctccatgacacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCCGTATG-ACCGATTTACGGTTGCAGAATTAAAGCAAgtactcagttttgggaaagtcaagccagctactccagctctggtcaacgt Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT--------TTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgacacctaactatccttcctccatgacacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCC--------CGTATGACCGATTTACGGTTGCAGAATTAAAGCAAgtactcagttttgggaaagtcaagccagctactccagctctggtcaacgt Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgacacctaactatccttcctccatgacacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCCGTATGACCGATTTACGGTTGCAGAATTAAAGCAAgtactcagttttgggaaagtcaagccagctactccagctctggtcaacgt Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgacacctaactatccttcctccatgacacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCCGTATGACCGATTTACGGTTGCAGAATTAAAGCAAgtactcagttttgggaaagtcaagccagctactccagctctggtcaacgt Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgacacctaactatccttcctccatgacacagAAGAAGAAGCCAGAGGCCCCCAAACTATCACGAAAGAAGTTGCGCCCGTATGACCGATTTACGGTTGCAGAATTAAAGCAAgtactcagttttgggaaagtcaagccagctactccagctctggtcaacgt #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGAC-ACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagaaAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACCACAGTGT-CATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagaaAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACCACAGTGTCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttgtggttaattatggccaaggagaaatgtgtcatttaca gAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACCACAGTGTCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGAC-ACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACCACAGTGT-CATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Pairagon AAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGA-CACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagaaaaagcagAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACCACAGTGT-CATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACCACAGTGTCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACCACAGTGTCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from GeneWise ----------------GAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagAAATGTGTCATTTACAGAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACCACAGTGTCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc #### Sfxn2_ID9971_9 --> 0 - 2 Original Alignment AAGGTCAAAGTGATGCACGCCCCCCTGCAG-GTCTTGCTGTGTGGCTGCtt ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGCGTC---CTTTGTGGTTGTtcgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from CESAR AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCtt ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAG--CGTCCTTTGTGGTTGTtcgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Spaln_aa2Genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGCGTCCTTTG------TGGTTgttcgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Spaln_nt2Genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAG--CGTCCTTTGTGGTTGTTCgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Pairagon AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAG--CGTCCTTTGTGGTTGTTCgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Exonerate_protein2genome AAGGTCAAAGTGATGCACGCCCCCCTGCAG-GTCTTGCTGTGTGGCTGCTT ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGCGTC---CTTTGTGGTTGTTCgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Exonerate_coding2genome ttggttccctgcacctagcttttcagcagctttaacattttatttttcagaaagtcaaagtgatacatgcccccctacagcgtcctttgtggttgttcgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from GeneWise ttggttccctgcacctagcttttcagcagctttaacattttatttttcagaaagtcaaagtgatacatgcccccctacagcgtcctttgtggttgttcgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGC-GATGCTCCCATCACTGTGca ataaaaagcttatacatctgaacccagttgctctgtgtctgtccccacagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGACGATG-TCCTATCACTGTCaggtgagtcacacccccacacaaacatccctagtccccatgattttggtgcc Alignment from CESAR gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaaagcttatacatctgaacccagttgctctgtgtctgtccccacagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGACGATGTCCTATCACTGTCaggtgagtcacacccccacacaaacatccctagtccccatgattttggtgcc Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaagcttatacatctgaacccagttgctctgtgtctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGACGATGTCCTATCACTGTCAGgtgagtcacacccccacacaaacatccctagtccccatgattttggtgcc Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaagcttatacatctgaacccagttgctctgtgtctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGACGATGTCCTATCACTGTCAGgtgagtcacacccccacacaaacatccctagtccccatgattttggtgcc Alignment from Pairagon GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGG-CGATGCTCCCATCACTGTGCA ataaaaagcttatacatctgaacccagttgctctgtgtctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGACGATG-TCCTATCACTGTCAGgtgagtcacacccccacacaaacatccctagtccccatgattttggtgcc Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaagcttatacatctgaacccagttgctctgtgtctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGACGATGTCCTATCACTGTCAGgtgagtcacacccccacacaaacatccctagtccccatgattttggtgcc Alignment from Exonerate_coding2genome ataaaaagcttatacatctgaacccagttgctctgtgtctgtccccacagaaagactcccactgtggtgttttggcagtgggtgaatcaatcatttaatgctattattaactactctaatcggagtggacgatgtcctatcactgtcaggtgagtcacacccccacacaaacatccctagtccccatgattttggtgcc Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaagcttatacatctgaacccagttgctctgtgtctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGACGATGTCCTATCACTGTCAGgtgagtcacacccccacacaaacatccctagtccccatgattttggtgcc #### Shoc2_ID11421_7 --> 0 - 1 Original Alignment AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGT-CACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gcaattgaatatacaccatgtatgtttgtgtggccactgatgctttgcagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCCACCTCACTA-CCTCACTCACCTTGGTCTAGGTGAGAACCTGCTCACTCACCTGCCTGAAGAAATTggtaagtacttggatgacaccgataattttgtatatctgacattttaagaa Alignment from CESAR AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gcaattgaatatacaccatgtatgtttgtgtggccactgatgctttgcagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCCACCTCACTACCTCACTCACCTTGGTCTAGGTGAGAACCTGCTCACTCACCTGCCTGAAGAAATTggtaagtacttggatgacaccgataattttgtatatctgacattttaagaa Alignment from Spaln_aa2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcaattgaatatacaccatgtatgtttgtgtggccactgatgctttgcagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCCACCTCACTACCTCACTCACCTTGGTCTAGGTGAGAACCTGCTCACTCACCTGCCTGAAGAAATTGgtaagtacttggatgacaccgataattttgtatatctgacattttaagaa Alignment from Spaln_nt2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcaattgaatatacaccatgtatgtttgtgtggccactgatgctttgcagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCCACCTCACTACCTCACTCACCTTGGTCTAGGTGAGAACCTGCTCACTCACCTGCCTGAAGAAATTGgtaagtacttggatgacaccgataattttgtatatctgacattttaagaa Alignment from Pairagon AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcaattgaatatacaccatgtatgtttgtgtggccactgatgctttgcagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCCACCTCACTACCTCACTCACCTTGGTCTAGGTGAGAACCTGCTCACTCACCTGCCTGAAGAAATTGgtaagtacttggatgacaccgataattttgtatatctgacattttaagaa Alignment from Exonerate_protein2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcaattgaatatacaccatgtatgtttgtgtggccactgatgctttgcagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCCACCTCACTACCTCACTCACCTTGGTCTAGGTGAGAACCTGCTCACTCACCTGCCTGAAGAAATTGgtaagtacttggatgacaccgataattttgtatatctgacattttaagaa Alignment from Exonerate_coding2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcaattgaatatacaccatgtatgtttgtgtggccactgatgctttgcagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCCACCTCACTACCTCACTCACCTTGGTCTAGGTGAGAACCTGCTCACTCACCTGCCTGAAGAAATTGgtaagtacttggatgacaccgataattttgtatatctgacattttaagaa Alignment from GeneWise AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcaattgaatatacaccatgtatgtttgtgtggccactgatgctttgcagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCCACCTCACTACCTCACTCACCTTGGTCTAGGTGAGAACCTGCTCACTCACCTGCCTGAAGAAATTGgtaagtacttggatgacaccgataattttgtatatctgacattttaagaa #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTG-TCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttgattttctgttgggtgtggcatccttgtcctatctgttgtgtcccaggCCA---CCTGGGAGCCTACTCAGAAA-GGTCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTTGCAGCGAgtatgttgcatacctggaaagggtttaaagggctgccatgggacgtggga Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttgattttctgttgggtgtggcatccttgtcctatctgttgtgtcccaggCCA---CCTGGGAGCCTACTCAGAAAGGTCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTTGCAGCGAgtatgttgcatacctggaaagggtttaaagggctgccatgggacgtggga Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttgattttctgttgggtgtggcatccttgtcctatctgttgtgtcccagGCCA---CCTGGGAGCCTACTCAGAAAGGTCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTTGCAGCGAgtatgttgcatacctggaaagggtttaaagggctgccatgggacgtggga Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttgattttctgttgggtgtggcatccttgtcctatctgttgtgtcccagGCC---ACCTGGGAGCCTACTCAGAAAGGTCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTTGCAGCGAgtatgttgcatacctggaaagggtttaaagggctgccatgggacgtggga Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttgattttctgttgggtgtggcatccttgtcctatctgttgtgtcccagGCC---ACCTGGGAGCCTACTCAGAAAGGTCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTTGCAGCGAgtatgttgcatacctggaaagggtttaaagggctgccatgggacgtggga Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttgattttctgttgggtgtggcatccttgtcctatctgttgtgtcccagGCCA---CCTGGGAGCCTACTCAGAAAGGTCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTTGCAGCGAgtatgttgcatacctggaaagggtttaaagggctgccatgggacgtggga Alignment from Exonerate_coding2genome cttgattttctgttgggtgtggcatccttgtcctatctgttgtgtcccaggccacctgggagcctactcagaaaggtctctcatctagagtccatgctctggaaattgcaagaggatttgcagcgagtatgttgcatacctggaaagggtttaaagggctgccatgggacgtggga Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttgattttctgttgggtgtggcatccttgtcctatctgttgtgtcccagGCCA---CCTGGGAGCCTACTCAGAAAGGTCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTTGCAGCGAgtatgttgcatacctggaaagggtttaaagggctgccatgggacgtggga #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAAC-ACAATTCTGGAGTCACTGTCCCGGGAGg aggcttgacatcattgtcttcgctcttgttttttttcactttttttttagttATGCCAGAAGCTGCCACTGAAACCTTGGAT---GAATGGCAGTCCATCTCTGCAATTTCCTCCACTTGCAACCACAATCT-GGAGTCCCTGTCTCGGGAAggtaagttccctgtctcgggaaggtgatgctgttcattggacattagccaa Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg aggcttgacatcattgtcttcgctcttgttttttttcactttttttttagttATGCCAGAAGCTGCCACTGAAACCTTG---GATGAATGGCAGTCCATCTCTGCAATTTCCTCCACTTGCAACCACAATCTGGAGTCCCTGTCTCGGGAAggtaagttccctgtctcgggaaggtgatgctgttcattggacattagccat Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG aggcttgacatcattgtcttcgctcttgttttttttcactttttttttagTTATGCCAGAAGCTGCCACTGAAACCTTG---GATGAATGGCAGTCCATCTCTGCAATTTCCTCCACTTGCAACCACAATCTGGAGTCCCTGTCTCGGGAAGgtaagttccctgtctcgggaaggtgatgctgttcattggacattagccaa Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG aggcttgacatcattgtcttcgctcttgttttttttcactttttttttagTTATGCCAGAAGCTGCCACTGAAACCTT---GGATGAATGGCAGTCCATCTCTGCAATTTCCTCCACTTGCAACCACAATCTGGAGTCCCTGTCTCGGGAAGgtaagttccctgtctcgggaaggtgatgctgttcattggacattagccaa Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG aggcttgacatcattgtcttcgctcttgttttttttcactttttttttagTTATGCCAGAAGCTGCCACTGAAACCTT---GGATGAATGGCAGTCCATCTCTGCAATTTCCTCCACTTGCAACCACAATCTGGAGTCCCTGTCTCGGGAAGgtaagttccctgtctcgggaaggtgatgctgttcattggacattagccaa Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG aggcttgacatcattgtcttcgctcttgttttttttcactttttttttagTTATGCCAGAAGCTGCCACTGAAACCTTG---GATGAATGGCAGTCCATCTCTGCAATTTCCTCCACTTGCAACCACAATCTGGAGTCCCTGTCTCGGGAAGgtaagttccctgtctcgggaaggtgatgctgttcattggacattagccaa Alignment from Exonerate_coding2genome aggcttgacatcattgtcttcgctcttgttttttttcactttttttttagttatgccagaagctgccactgaaaccttggatgaatggcagtccatctctgcaatttcctccacttgcaaccacaatctggagtccctgtctcgggaaggtaagttccctgtctcgggaaggtgatgctgttcattggacattagccaa Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG aggcttgacatcattgtcttcgctcttgttttttttcactttttttttagTTATGCCAGAAGCTGCCACTGAAACCTTG---GATGAATGGCAGTCCATCTCTGCAATTTCCTCCACTTGCAACCACAATCTGGAGTCCCTGTCTCGGGAAGgtaagttccctgtctcgggaaggtgatgctgttcattggacattagccaa #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTC-CTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggaggtgcttccgcaagagaataatcaatttaactctttgttttacagcTCCCTGACTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCCTACTGA-TACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCACCTTCCCAGgtaaggagggaggcgtaggctctattaacacatggcccactgtcaaggtc Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggaggtgcttccgcaagagaataatcaatttaactctttgttttacagcTCCCTGACTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCCTACTGATACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCACCTTCCCAGgtaaggagggaggcgtaggctctattaacacatggcccactgtcaaggtc Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggaggtgcttccgcaagagaataatcaatttaactctttgttttacagCTCCCTGACTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCCTACTGATACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCACCTTCCCAGgtaaggagggaggcgtaggctctattaacacatggcccactgtcaaggtc Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggaggtgcttccgcaagagaataatcaatttaactctttgttttacagCTCCCTGACTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCCTACTGATACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCACCTTCCCAGgtaaggagggaggcgtaggctctattaacacatggcccactgtcaaggtc Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggaggtgcttccgcaagagaataatcaatttaactctttgttttacagCTCCCTGACTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCCTACTGATACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCACCTTCCCAGgtaaggagggaggcgtaggctctattaacacatggcccactgtcaaggtc Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggaggtgcttccgcaagagaataatcaatttaactctttgttttacagCTCCCTGACTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCCTACTGATACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCACCTTCCCAGgtaaggagggaggcgtaggctctattaacacatggcccactgtcaaggtc Alignment from Exonerate_coding2genome agggaggtgcttccgcaagagaataatcaatttaactctttgttttacagctccctgactgatgaggtccctgtcctacccaagattacaccagatctccctactgatacaacagctaacacttctgcccctgatactgatagagaaacaccaccttcccaggtaaggagggaggcgtaggctctattaacacatggcccactgtcaaggtc Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggaggtgcttccgcaagagaataatcaatttaactctttgttttacagCTCCCTGACTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCCTACTGATACAACAGCTAACACTTCTGCCCCTGATACTGATAGAGAAACACCACCTTCCCAGgtaaggagggaggcgtaggctctattaacacatggcccactgtcaaggtc #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccacagcatccttgccaatacatgattctgtttttccgtagcaGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCATG-GTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtaaagtatttgccaagactaggaaaaaccactgggaatcagtctc Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccacagcatccttgccaatacatgattctgtttttccgtagcaGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCATGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtaaagtatttgccaagactaggaaaaaccactgggaatcagtctc Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccacagcatccttgccaatacatgattctgtttttccgtagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCATGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtaaagtatttgccaagactaggaaaaaccactgggaatcagtctc Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccacagcatccttgccaatacatgattctgtttttccgtagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCATGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtaaagtatttgccaagactaggaaaaaccactgggaatcagtctc Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccacagcatccttgccaatacatgattctgtttttccgtagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCATG-GTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtaaagtatttgccaagactaggaaaaaccactgggaatcagtctc Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccacagcatccttgccaatacatgattctgtttttccgtagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCATGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtaaagtatttgccaagactaggaaaaaccactgggaatcagtctc Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccacagcatccttgccaatacatgattctgtttttccgtagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCATGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtaaagtatttgccaagactaggaaaaaccactgggaatcagtctc Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccacagcatccttgccaatacatgattctgtttttccgtagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCATGGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtaaagtatttgccaagactaggaaaaaccactgggaatcagtctc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGA-GGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagaaCATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGACGGGGCCC-CTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagaaCATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGACGGGGCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGACGGGGCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGACGGGGCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGACGGGGCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGACGGGGCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Exonerate_coding2genome caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagaacatcaaaacttctttggactagatgaggcactaggtccagtggctttgagtctccaacgggaggaaaaggagggcagtcgacggggccccttacacagctttcaagtcattgtgcgaacaatgcaggtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGACGGGGCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCT-AACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctactactaggtgtactgactccagccattcctctcccacagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTTAGGACC---CCTCAACATAT-TCTCTTGCTGAGATCAGACAGCAGTAACTACAGAgtaaaatgcttgtgctaaactacatggttatatcacagtcactgaggaaa Alignment from CESAR ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctactactaggtgtactgactccagccattcctctcccacagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTTAGGACCCCTCAACATATT---CTCTTGCTGAGATCAGACAGCAGTAACTACAGAgtaaaatgcttgtgctaaactacatggttatatcacagtcactgaggaaa Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctactactaggtgtactgactccagccattcctctcccacagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTTAGGACCCCTCAACATATT---CTCTTGCTGAGATCAGACAGCAGTAACTACAGAgtaaaatgcttgtgctaaactacatggttatatcacagtcactgaggaaa Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctactactaggtgtactgactccagccattcctctcccacagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTTAGGACC--CCTCAACATAT-TCTCTTGCTGAGATCAGACAGCAGTAACTACAGAgtaaaatgcttgtgctaaactacatggttatatcacagtcactgaggaaa Alignment from Pairagon ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctactactaggtgtactgactccagccattcctctcccacagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTTAGGACC--CCTCAACATAT-TCTCTTGCTGAGATCAGACAGCAGTAACTACAGAgtaaaatgcttgtgctaaactacatggttatatcacagtcactgaggaaa Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctactactaggtgtactgactccagccattcctctcccacagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTTAGGACC---CCTCAACATATTCTCTTGCTGAGATCAGACAGCAGTAACTACAGAgtaaaatgcttgtgctaaactacatggttatatcacagtcactgaggaaa Alignment from Exonerate_coding2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctactactaggtgtactgactccagccattcctctcccacagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTTAGGACC---CCTCAACATATTCTCTTGCTGAGATCAGACAGCAGTAACTACAGAgtaaaatgcttgtgctaaactacatggttatatcacagtcactgaggaaa Alignment from GeneWise ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctactactaggtgtactgactccagccattcctctcccacagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTTAGGACCCCTCAACATATT---CTCTTGCTGAGATCAGACAGCAGTAACTACAGAgtaaaatgcttgtgctaaactacatggttatatcacagtcactgaggaaa #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGC-TCCTCTTGCTCATCTGTGGCTg caggtttatgtaggggaccaggaaggcaaccactacccctctccctttagtgTTTGCATAT------GGTTATGCCTTCCTCCTGATCGCCAAGTCCTTGCAAGGAATAGGTCTCATCTT-CTCATCTGTTGCTggtacagctataattaatgtatgaccatggactcacaggtattgaggcagg Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg caggtttatgtaggggaccaggaaggcaaccactacccctctccctttagtgTTTGCATAT------GGTTATGCCTTCCTCCTGATCGCCAAGTCCTTGCAAGGAATAGGTCTCATCTTCTCATCTGTTGCTggtacagctataattaatgtatgaccatggactcacaggtattgaggcagg Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcaaccactacccctctccctttagTGTTTGCATAT------GGTTATGCCTTCCTCCTGATCGCCAAGTCCTTGCAAGGAATAGGTCTCATCTTCTCATCTGTTGCTGgtacagctataattaatgtatgaccatggactcacaggtattgaggcagg Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGG-CTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcaaccactacccctctccctttagTGTTTGCAT------ATGGTTATGCCTTCCTCCTGATCGCCAAGTCCTTGCAAGGAATAGGTCTCATCTT-CTCATCTGTTGCTGgtacagctataattaatgtatgaccatggactcacaggtattgaggcagg Alignment from Pairagon TGTTTGCCTTCTCCAGCA----GCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGG-CTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcaaccactacccctctccctttagTGTTT----------GCATATGGTTATGCCTTCCTCCTGATCGCCAAGTCCTTGCAAGGAATAGGTCTCATCTT-CTCATCTGTTGCTGgtacagctataattaatgtatgaccatggactcacaggtattgaggcagg Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcaaccactacccctctccctttagTGTTTGCATAT------GGTTATGCCTTCCTCCTGATCGCCAAGTCCTTGCAAGGAATAGGTCTCATCTTCTCATCTGTTGCTGgtacagctataattaatgtatgaccatggactcacaggtattgaggcagg Alignment from Exonerate_coding2genome caggtttatgtaggggaccaggaaggcaaccactacccctctccctttagtgtttgcatatggttatgccttcctcctgatcgccaagtccttgcaaggaataggtctcatcttctcatctgttgctggtacagctataattaatgtatgaccatggactcacaggtattgaggcagg Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG caggtttatgtaggggaccaggaaggcaaccactacccctctccctttagTGTTTGCATATGGT------TATGCCTTCCTCCTGATCGCCAAGTCCTTGCAAGGAATAGGTCTCATCTTCTCATCTGTTGCTGgtacagctataattaatgtatgaccatggactcacaggtattgaggcagg #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTCCAGCCA-TCCCGAGTGCAGCCAGAA gccaagtatgggatacctgtggtatgattttatcatatttggatttgtagctATTCAACTCTTTGTAATTCAA---CTCCT-CATACTTCCGGATgtaagaagccgggaatttaaagcacagttaaatttttctccagtgccccg Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatacctgtggtatgattttatcatatttggatttgtagctATTCAACTCTTTGTAATTCAACTCCTC---ATACTTCCGGATgtaagaagccgggaatttaaagcacagttaaatttttctttcaattttgg Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatacctgtggtatgattttatcatatttggatttgtagCTATTCAACTCTTTGTAATTCAACTCCTC---ATACTTCCGGATgtaagaagccgggaatttaaagcacagttaaatttttctccagtgccccg Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatacctgtggtatgattttatcatatttggatttgtagCTATTCAACTCTTTGTAATTCAAC--TCCTCA-TACTTCCGGATgtaagaagccgggaatttaaagcacagttaaatttttctccagtgccccg Alignment from Pairagon CTATTCAGCTCTTT gccaagtatgggatacctgtggtatgattttatcatatttggatttgtagCTATTCAACTCTTTgtaattcaactcctcatacttccggatgtaagaagccgggaatttaaagcacagttaaatttttctccagtgccccg Alignment from Exonerate_protein2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatacctgtggtatgattttatcatatttggatttgtagCTATTCAACTCTTTGTAATTCAA---CTCCTCATACTTCCGGATgtaagaagccgggaatttaaagcacagttaaatttttctccagtgccccg Alignment from Exonerate_coding2genome TTTGTGCTCCAGCCATCCCGAGT gccaagtatgggatacctgtggtatgattttatcatatttggatttgtagctattcaactctttgtaattcaactcctcatacttccggatgtaagaagccgggaatttaaagcacagTTAAATTTTTCTCCAGTGCCCCG Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATC gccaagtatgggatacctgtggtatgattttatcatatttggatttgtagctattcaactctttgtaattcaactcctcatacttccggatgtaagaagccgggaatttaaagCACAGTTAAATTTTTCTCCAGTGCCCCG #### Slc18a2_ID12944_11 --> 1 - 0 Original Alignment gTGGCTGTGTGCTCTTCTGGGAATGATA-GTTGTTGGGATCAGCATTTTATGT atggactcaattttccctgtctaatgagtctacaaatgcctttcctccaggTGGCTGTGTGCCCTTTTGGGAATGACACGTAG-AGGCATCACTATCTTATGTgtaacccaggggggacagtattccttacatggatcccaattagctgacaa Alignment from CESAR gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggactcaattttccctgtctaatgagtctacaaatgcctttcctccaggTGGCTGTGTGCCCTTTTGGGAATGACACGTAGAGGCATCACTATCTTATGTgtaacccaggggggacagtattccttacatggatcccaattagctgacaa Alignment from Spaln_aa2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggactcaattttccctgtctaatgagtctacaaatgcctttcctccagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGAGGCATCACTATCTTATGTgtaacccaggggggacagtattccttacatggatcccaattagctgacaa Alignment from Spaln_nt2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggactcaattttccctgtctaatgagtctacaaatgcctttcctccagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGAGGCATCACTATCTTATGTgtaacccaggggggacagtattccttacatggatcccaattagctgacaa Alignment from Pairagon GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggactcaattttccctgtctaatgagtctacaaatgcctttcctccagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGAGGCATCACTATCTTATGTgtaacccaggggggacagtattccttacatggatcccaattagctgacaa Alignment from Exonerate_protein2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggactcaattttccctgtctaatgagtctacaaatgcctttcctccagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGAGGCATCACTATCTTATGTgtaacccaggggggacagtattccttacatggatcccaattagctgacaa Alignment from Exonerate_coding2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggactcaattttccctgtctaatgagtctacaaatgcctttcctccagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGAGGCATCACTATCTTATGTgtaacccaggggggacagtattccttacatggatcccaattagctgacaa Alignment from GeneWise GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atggactcaattttccctgtctaatgagtctacaaatgcctttcctccagGTGGCTGTGTGCCCTTTTGGGAATGACACGTAGAGGCATCACTATCTTATGTgtaacccaggggggacagtattccttacatggatcccaattagctgacaa #### Slc22a12_ID1788_9 --> 1 - 2 Original Alignment gATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATG-CTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAAca gcctaatgaatacaaaagaatattgctgctctgcttttgcgatgtttcaggATGACTGCAGTATGTGTCTGCCATGTTGTGGCTCGAGGGGGAGCTACTCTTGG-GCCTTTATTG---------------------------ATACCCTTGCTGGTTTATGGA------CCAGTTTTAAGTGGCTTTGCAGCATTGCTACTGCCTGAGACCAAAATATTACCTCTTCCTGACACCATTCAAGATATACAGAAAcagtgagtttaaacagactgtttgaatttgctgtttgattccctccatcttt Alignment from CESAR gATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAAca gcctaatgaatacaaaagaatattgctgctctgcttttgcgatgtttcaggATGACTGCAGTATGTGTCTGCCATGTTGTGGCTCGAGGGGGAGCTACTCTTGGGCCTTTATTG---------------------------ATACCCTTGCTGGTTTATGGA------CCAGTTTTAAGTGGCTTTGCAGCATTGCTACTGCCTGAGACCAAAATATTACCTCTTCCTGACACCATTCAAGATATACAGAAAcagtgagtttaaacagactgtttgaatttgctgtttgattccctccatcttt Alignment from Spaln_aa2Genome GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA gcctaatgaatacaaaagaatattgctgctctgcttttgcgatgtttcagGATGACTGCAGTATGTGTCTGCCATGTTGTGGCTCGAGGGGGAGCTACTCTTGGGCCTTTATTG---------------------------ATACCCTTGCTGGTTTATGGA------CCAGTTTTAAGTGGCTTTGCAGCATTGCTACTGCCTGAGACCAAAATATTACCTCTTCCTGACACCATTCAAGATATACAGAAACAgtgagtttaaacagactgtttgaatttgctgtttgattccctccatcttt Alignment from Spaln_nt2Genome GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA gcctaatgaatacaaaagaatattgctgctctgcttttgcgatgtttcagGATGACTGCAGTATGTGTCTGCCATGTTGTGGCTCGAGGGGGAGCTACTCTTGGGCCTTT---------------------------ATTGATACCCTTGCTGGTTTATGGA------CCAGTTTTAAGTGGCTTTGCAGCATTGCTACTGCCTGAGACCAAAATATTACCTCTTCCTGACACCATTCAAGATATACAGAAACAgtgagtttaaacagactgtttgaatttgctgtttgattccctccatcttt Alignment from Pairagon GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA gcctaatgaatacaaaagaatattgctgctctgcttttgcgatgtttcagGATGACTGCAGTATGTGTCTGCCATGTTGTGGCTCGAGGGGGAGCTACTCTTGGGCCTTTA---------------------------TTGATACCCTTGCTGGTTTATGGA------CCAGTTTTAAGTGGCTTTGCAGCATTGCTACTGCCTGAGACCAAAATATTACCTCTTCCTGACACCATTCAAGATATACAGAAACAgtgagtttaaacagactgtttgaatttgctgtttgattccctccatcttt Alignment from Exonerate_protein2genome GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGC gcctaatgaatacaaaagaatattgctgctctgcttttgcgatgtttcagGATGACTGCAGTATGTGTCTGCCATGTTGTGGCTCGAGGGGGAGCTACTCTTGGGCCTTTATTGATACCCTTGCTGGTTTATGGAccagttttaagtggctttgcagcattgctactgcctgagaccaaaatattacctcttcctgacaccattcaagatatacagaaacagtgagtttaaacagactgtttgaatttgctgtttgattccctccatcttt Alignment from Exonerate_coding2genome gcctaatgaatacaaaagaatattgctgctctgcttttgcgatgtttcaggatgactgcagtatgtgtctgccatgttgtggctcgagggggagctactcttgggcctttattgatacccttgctggtttatggaccagttttaagtggctttgcagcattgctactgcctgagaccaaaatattacctcttcctgacaccattcaagatatacagaaacagtgagtttaaacagactgtttgaatttgctgtttgattccctccatcttt Alignment from GeneWise GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA gcctaatgaatacaaaagaatattgctgctctgcttttgcgatgtttcagGATGACTGCAGTATGTGTCTGCCATGTTGTGGCTCGAGGGGGAGCTACTCTTGGGCCTTTATTG---------------------------ATACCCTTGCTGGTTTATGGA------CCAGTTTTAAGTGGCTTTGCAGCATTGCTACTGCCTGAGACCAAAATATTACCTCTTCCTGACACCATTCAAGATATACAGAAACAgtgagtttaaacagactgtttgaatttgctgtttgattccctccatcttt #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTA-CTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACCTCCACA-ACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTctgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACCTCCACAACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTctgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACCTCCACAACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACCTCCACAACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTA-CTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACCTCCACA-ACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACCTCCACAACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Exonerate_coding2genome ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttaggtcctatggtcagctatggacaaagaaccaagcagggaccaggcctgcgccagtcttagcactttacctccacaacctggactgcgtcaccgtagtattatctctatgctgtgtctgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACCTCCACAACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGC-ACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gttagccacagaactattactgctcctcaccatttcatcttaactttcaggTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTTTTGGTGTCTGTGTCTGTCCACAGGTG-TGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTTTTCTTTCCTGCTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTtgtactgcaagctgttcctggctgacaggatgaactatggcacttcactca Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gttagccacagaactattactgctcctcaccatttcatcttaactttcaggTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTTTTGGTGTCTGTGTCTGTCCACAGGTGTGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTTTTCTTTCCTGCTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTtgtactgcaagctgttcctggctgacaggatgaactatggcacttcactca Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttagccacagaactattactgctcctcaccatttcatcttaactttcagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTTTTGGTGTCTGTGTCTGTCCACAGGTGTGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTTTTCTTTCCTGCTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtactgcaagctgttcctggctgacaggatgaactatggcacttcactca Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttagccacagaactattactgctcctcaccatttcatcttaactttcagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTTTTGGTGTCTGTGTCTGTCCACAGGTGTGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTTTTCTTTCCTGCTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtactgcaagctgttcctggctgacaggatgaactatggcacttcactca Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCG---------GCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttagccacagaactattactgctcctcaccatttcatcttaactttcagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTTTTGGTGTCTGTGTCTGTCCACAGGTG---------TGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTTTTCTTTCCTGCTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtactgcaagctgttcctggctgacaggatgaactatggcacttcactca Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttagccacagaactattactgctcctcaccatttcatcttaactttcagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTTTTGGTGTCTGTGTCTGTCCACAGGTGTGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTTTTCTTTCCTGCTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtactgcaagctgttcctggctgacaggatgaactatggcacttcactca Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttagccacagaactattactgctcctcaccatttcatcttaactttcagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTTTTGGTGTCTGTGTCTGTCCACAGGTGTGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTTTTCTTTCCTGCTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtactgcaagctgttcctggctgacaggatgaactatggcacttcactca Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttagccacagaactattactgctcctcaccatttcatcttaactttcagGTTCGGTTGCAGAAGGGTCCTGACCTGGAGCTATCTTTTGGTGTCTGTGTCTGTCCACAGGTGTGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTTTTCTTTCCTGCTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtactgcaagctgttcctggctgacaggatgaactatggcacttcactca #### Slc22a20_ID1344_9 --> 1 - 2 Original Alignment gCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCA-CTGGTAGAAACTATTGCTGCAATGGAGAGAcg gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcaggCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACCTAGTCG-AATTATCACTGCAATGGAGAGAcggtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from CESAR gCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcg gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcaggCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACCTAGTCGAATTATCACTGCAATGGAGAGAcggtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Spaln_aa2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACCTAGTCGAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Spaln_nt2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGC---TATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAAC---GACCCGTAATGTGCCACCTAGTCGAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Pairagon GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAAC---------TATTGCTGCAATGGAGAGACG gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGC---TATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAAC---GACCCGTAATGTGCCAC---------CTAGTCGAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Exonerate_protein2genome GATCAGGCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gacttaatcatctctggaccaggtcctttgcctctttctcaccaTCTCAGGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACCTAGTCGAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Exonerate_coding2genome gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcaggcaaatgggtatggagtttgcttctgtcaatgctattggaggtttggtgcccccattgatcacatcactaggcgaaatcagcccagtactgccaccagtattctctggtgctacatctgttctagccggcatggctgtagcttgcttcctaacgacccgtaatgtgccacctagtcgaattatcactgcaatggagagacggtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from GeneWise GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACCTAGTCGAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac #### Slc22a20_ID1345_8 --> 2 - 2 Original Alignment atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAA-CTCTATCCCACAGAGATCag ttaccagtacatgcaagtccagcctagacttaaaatttttttcttttcaggtCAGCAGATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGGTGAGTTCGTTTATCTGTGTGTACCTTTTTATAGGGGGACCTGT-TCCA------ATCaggtgggtccaggacttaatcatctctggaccaggtccttagcctgtctctc Alignment from CESAR atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag ttaccagtacatgcaagtccagcctagacttaaaatttttttcttttcaggtCAGCAGATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGGTGAGTTCGTTTATCTGTGTGTACCTTTTTATAGGGGGA------CCTGTTCCAATCaggtgggtccaggacttaatcatctctggaccaggtcctttgcctctttctc Alignment from Spaln_aa2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttaccagtacatgcaagtccagcctagacttaaaatttttttcttttcagGTCAGCAGATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGGTGAGTTCGTTTATCTGTGTGTACCTTTTTATAGGGGGA------CCTGTTCCAATCAGgtgggtccaggacttaatcatctctggaccaggtccttagcctgtctctc Alignment from Spaln_nt2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttaccagtacatgcaagtccagcctagacttaaaatttttttcttttcagGTCAGCAGATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGGTGAGTTCGTTTATCTGTGTGTACCTTTTTATAGGGGGAC-CTGTTCCA-----ATCAGgtgggtccaggacttaatcatctctggaccaggtccttagcctgtctctc Alignment from Pairagon ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTT-----------------CACGGGAGAACTCTATCCCACAGAGATCAG ttaccagtacatgcaagtccagcctagacttaaaatttttttcttttcagGTCAGCAGATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGGTGAGTTCGTTTATCTGTGTGTACCTTTTTATAGGGGGACCTGTTCCA-----------------------ATCAGgtgggtccaggacttaatcatctctggaccaggtccttagcctgtctctc Alignment from Exonerate_protein2genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttaccagtacatgcaagtccagcctagacttaaaatttttttcttttcagGTCAGCAGATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGGTGAGTTCGTTTATCTGTGTGTACCTTTTTATAGGGGGA------CCTGTTCCAATCAGgtgggtccaggacttaatcatctctggaccaggtccttagcctgtctctc Alignment from Exonerate_coding2genome ttaccagtacatgcaagtccagcctagacttaaaatttttttcttttcaggtcagcagatgttgcgaactgtgccagctgaactagggaagggctgtctggtgagttcgtttatctgtgtgtacctttttatagggggacctgttccaatcaggtgggtccaggacttaatcatctctggaccaggtccttagcctgtctctc Alignment from GeneWise ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttaccagtacatgcaagtccagcctagacttaaaatttttttcttttcagGTCAGCAGATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGGTGAGTTCGTTTATCTGTGTGTACCTTTTTATAGGGGGA------CCTGTTCCAATCAGgtgggtccaggacttaatcatctctggaccaggtccttagcctgtctctc #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCA-ATATTTGTCTTGCTTATACCCACAag acttccacagttcaaaaccccccctaaattctctttctctctcatattagtgTTAGAATGGACAAGCCCTAAAACCCAAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTT---GTATCTGTGCCTCATTTTCGTTT-GCTTGTACCAACAaggtatgtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag acttccacagttcaaaaccccccctaaattctctttctctctcatattagtgTTAGAATGGACAAGCCCTAAAACCCAAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTT---GTATCTGTGCCTCATTTTCGTTTGCTTGTACCAACAaggtatgtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG acttccacagttcaaaaccccccctaaattctctttctctctcatattagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTT---GTATCTGTGCCTCATTTTCGTTTGCTTGTACCAACAAGgtatgtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG acttccacagttcaaaaccccccctaaattctctttctctctcatattagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTTG---TATCTGTGCCTCATTTTCGTTTGCTTGTACCAACAAGgtatgtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG acttccacagttcaaaaccccccctaaattctctttctctctcatattagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTTG---TATCTGTGCCTCATTTTCGTTTGCTTGTACCAACAAGgtatgtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG acttccacagttcaaaaccccccctaaattctctttctctctcatattagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTT---GTATCTGTGCCTCATTTTCGTTTGCTTGTACCAACAAGgtatgtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG acttccacagttcaaaaccccccctaaattctctttctctctcatattagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTT---GTATCTGTGCCTCATTTTCGTTTGCTTGTACCAACAAGgtatgtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG acttccacagttcaaaaccccccctaaattctctttctctctcatattagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTT---GTATCTGTGCCTCATTTTCGTTTGCTTGTACCAACAAGgtatgtcacaagaattcttatacaccattctgtccaatggtacatttgag #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTC-ATGGTGGGAGTGTTACTGGGAGCCATG---ATGTTTGGCTACCTGGCGGACag ggctactaaaattgacatatttcagagcgaccttcctgtttctcttgcagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCCATGGTAG-AGTG---TTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATaggtgagctaacaagtattcatgcacatggaagatgaatccattttagccca Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATG---TTTGGCTACCTGGCGGACag ggctactaaaattgacatatttcagagcgaccttcctgtttctcttgcagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCCATGGTAGAGTGTTT---GGTGCCATGATGTTGTTTGGTTACCTTTCAGATaggtgagctaacaagtattcatgcacatggaagatgaatccattttagccca Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagagcgaccttcctgtttctcttgcagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCCATGGTAGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgtgagctaacaagtattcatgcacatggaagatgaatccattttagccca Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTC-ATGGTGGGAGTGTTACTGGGAGCCATGATGTT---TGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagagcgaccttcctgtttctcttgcagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCCATGGT-AGAGTGT---TTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgtgagctaacaagtattcatgcacatggaagatgaatccattttagccca Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTT---------------------CATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagagcgaccttcctgtttctcttgcagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCCATGGTAGAGTGTTTGGTGCCATG---------------------ATGTTGTTTGGTTACCTTTCAGATAGgtgagctaacaagtattcatgcacatggaagatgaatccattttagccca Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagagcgaccttcctgtttctcttgcagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCCATGGTAGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgtgagctaacaagtattcatgcacatggaagatgaatccattttagccca Alignment from Exonerate_coding2genome ggctactaaaattgacatatttcagagcgaccttcctgtttctcttgcagtggaacctttgctcccatagagcctttcaccgattggcccagtcactgttccatggtagagtgtttggtgccatgatgttgtttggttacctttcagataggtgagctaacaagtattcatgcacatggaagatgaatccattttagccca Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagagcgaccttcctgtttctcttgcagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCCATGGTAGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgtgagctaacaagtattcatgcacatggaagatgaatccattttagccca #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTA-CTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg aagttcagtatgagtggaccagactctctttggcctcgggctccgggtaggCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACCTGGGAGGCA-TGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATtggtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg aagttcagtatgagtggaccagactctctttggcctcgggctccgggtaggCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACCTGGGAGGCATGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATtggtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACCTGGGAGGCATGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTAC-TGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACCTGGGAGGCA-TGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTA-CTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACCTGGGAGGCA-TGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACCTGGGAGGCATGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACCTGGGAGGCATGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACCTGGGAGGCATGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAAC-TCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG cattccactaccaaagttttgctaatgaggtgtctttatcccctttccagGTTCTAGGGTTCTTTAAGGGAATGAGTTTCCCAATAGCTACCGTAGCTCTGGTTAATCTCTGTCT-GTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCCCATCAGGAGCACCAGGTCCAGCCTCCAAGCCACACAAATACCTTTATAGCAGGTTGTACCGGGGGTCTCCGGCAGgtaagtatatcatggttgcaggataattcatatacccttagtttgtagaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG cattccactaccaaagttttgctaatgaggtgtctttatcccctttccagGTTCTAGGGTTCTTTAAGGGAATGAGTTTCCCAATAGCTACCGTAGCTCTGGTTAATCTCTGTCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCCCATCAGGAGCACCAGGTCCAGCCTCCAAGCCACACAAATACCTTTATAGCAGGTTGTACCGGGGGTCTCCGGCAGgtaagtatatcatggttgcaggataattcatatacccttagtttgtagaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG cattccactaccaaagttttgctaatgaggtgtctttatcccctttccagGTTCTAGGGTTCTTTAAGGGAATGAGTTTCCCAATAGCTACCGTAGCTCTGGTTAATCTCTGTCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCCCATCAGGAGCACCAGGTCCAGCCTCCAAGCCACACAAATACCTTTATAGCAGGTTGTACCGGGGGTCTCCGGCAGgtaagtatatcatggttgcaggataattcatatacccttagtttgtagaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAA-CTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG cattccactaccaaagttttgctaatgaggtgtctttatcccctttccagGTTCTAGGGTTCTTTAAGGGAATGAGTTTCCCAATAGCTACCGTAGCTCTGGTTAATCTCTGT-CTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCCCATCAGGAGCACCAGGTCCAGCCTCCAAGCCACACAAATACCTTTATAGCAGGTTGTACCGGGGGTCTCCGGCAGgtaagtatatcatggttgcaggataattcatatacccttagtttgtagaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG cattccactaccaaagttttgctaatgaggtgtctttatcccctttccagGTTCTAGGGTTCTTTAAGGGAATGAGTTTCCCAATAGCTACCGTAGCTCTGGTTAATCTCTGTCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCCCATCAGGAGCACCAGGTCCAGCCTCCAAGCCACACAAATACCTTTATAGCAGGTTGTACCGGGGGTCTCCGGCAGgtaagtatatcatggttgcaggataattcatatacccttagtttgtagaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG cattccactaccaaagttttgctaatgaggtgtctttatcccctttccagGTTCTAGGGTTCTTTAAGGGAATGAGTTTCCCAATAGCTACCGTAGCTCTGGTTAATCTCTGTCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCCCATCAGGAGCACCAGGTCCAGCCTCCAAGCCACACAAATACCTTTATAGCAGGTTGTACCGGGGGTCTCCGGCAGgtaagtatatcatggttgcaggataattcatatacccttagtttgtagaa Alignment from Exonerate_coding2genome TCAGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG cattccactaccaaagttttgctaatgaggtgtctttatcccctttcCAGGTTCTAGGGTTCTTTAAGGGAATGAGTTTCCCAATAGCTACCGTAGCTCTGGTTAATCTCTGTCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCCCATCAGGAGCACCAGGTCCAGCCTCCAAGCCACACAAATACCTTTATAGCAGGTTGTACCGGGGGTCTCCGGCAGgtaagtatatcatggttgcaggataattcatatacccttagtttgtagaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG cattccactaccaaagttttgctaatgaggtgtctttatcccctttccagGTTCTAGGGTTCTTTAAGGGAATGAGTTTCCCAATAGCTACCGTAGCTCTGGTTAATCTCTGTCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCCCATCAGGAGCACCAGGTCCAGCCTCCAAGCCACACAAATACCTTTATAGCAGGTTGTACCGGGGGTCTCCGGCAGgtaagtatatcatggttgcaggataattcatatacccttagtttgtagaa #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTG-GGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctccagtagaaaaggtgtttcttttgtttgctttgatagcTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTACGGCACCCTTC-CCCCTGGAATTTCTTCATTACTGCGATCCCAgtaggttagtgcattataaatgctacgaacaaattcccctatcacacctc Alignment from CESAR cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctccagtagaaaaggtgtttcttttgtttgctttgatagcTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTACGGCACCCTTCCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaggttagtgcattataaatgctacgaacaaattcccctatcacacctc Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctccagtagaaaaggtgtttcttttgtttgctttgatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTACGGCACCCTTCCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaggttagtgcattataaatgctacgaacaaattcccctatcacacctc Alignment from Spaln_nt2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctccagtagaaaaggtgtttcttttgtttgctttgatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTACGGCACCCTTCCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaggttagtgcattataaatgctacgaacaaattcccctatcacacctc Alignment from Pairagon CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTG-GGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctccagtagaaaaggtgtttcttttgtttgctttgatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTACGGCACCCTTC-CCCCTGGAATTTCTTCATTACTGCGATCCCAgtaggttagtgcattataaatgctacgaacaaattcccctatcacacctc Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctccagtagaaaaggtgtttcttttgtttgctttgatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTACGGCACCCTTCCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaggttagtgcattataaatgctacgaacaaattcccctatcacacctc Alignment from Exonerate_coding2genome tgattgatgtcctccagtagaaaaggtgtttcttttgtttgctttgatagctaccacctggctggcatcagctttttcattctgggactacggcacccttccccctggaatttcttcattactgcgatcccagtaggttagtgcattataaatgctacgaacaaattcccctatcacacctc Alignment from GeneWise GCGCGGGGAAACGCCCCTCGGGACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG aaaggtgtttcttttgtttgcttt---------------------GATAGCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTACGGCACCCTTCCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaggttagtgcattataaatgctacgaacaaattcccctatcacacctc #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGA-TACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttaatgttttcttccttattacaggtGACGTGGATGCCCAAACCTCTGCTCTGGGACTACT-CATCACACCTTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCACACCTGgtgagctgcttcatagtttatgttatgctatgcactgcttgaatataaaa Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttaatgttttcttccttattacaggtGACGTGGATGCCCAAACCTCTGCTCTGGGACTACTCATCACACCTTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCACACCTGgtgagctgcttcatagtttatgttatgctatgcactgcttgaatataaaa Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttaatgttttcttccttattacagGTGACGTGGATGCCCAAACCTCTGCTCTGGGACTACTCATCACACCTTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCACACCTGgtgagctgcttcatagtttatgttatgctatgcactgcttgaatataaaa Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttaatgttttcttccttattacagGTGACGTGGATGCCCAAACCTCTGCTCTGGGACTACTCATCACACCTTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCACACCTGgtgagctgcttcatagtttatgttatgctatgcactgcttgaatataaaa Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttaatgttttcttccttattacagGTGACGTGGATGCCCAAACCTCTGCTCTGGGACTACTCATCACACCTTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCACACCTGgtgagctgcttcatagtttatgttatgctatgcactgcttgaatataaaa Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttaatgttttcttccttattacagGTGACGTGGATGCCCAAACCTCTGCTCTGGGACTACTCATCACACCTTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCACACCTGgtgagctgcttcatagtttatgttatgctatgcactgcttgaatataaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttaatgttttcttccttattacagGTGACGTGGATGCCCAAACCTCTGCTCTGGGACTACTCATCACACCTTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCACACCTGgtgagctgcttcatagtttatgttatgctatgcactgcttgaatataaaa #### Slc29a2_ID793_7 --> 0 - 1 Original Alignment AAGTTTGCCCGTTACTACCTGACCGAGAAGCTG-TCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTg gggtttaactgtatcaagatgcttacattggagtttttcttcacaatcagAAGTTTTCCCGCTACTACCTAACTAAGAAGCTACTCTCAAGCTC-AACTCAGGAGCTTGAGAATAAAGCAGAACTCCTTCAAGCAggtgtgtatcaggattaattggctctgctaaaggctttactctttttcttt Alignment from CESAR AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTg gggtttaactgtatcaagatgcttacattggagtttttcttcacaatcagAAGTTTTCCCGCTACTACCTAACTAAGAAGCTACTCTCAAGCTCAACTCAGGAGCTTGAGAATAAAGCAGAACTCCTTCAAGCAggtgtgtatcaggattaattggctctgctaaaggctttactctttttcttt Alignment from Spaln_aa2Genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG gggtttaactgtatcaagatgcttacattggagtttttcttcacaatcagAAGTTTTCCCGCTACTACCTAACTAAGAAGCTACTCTCAAGCTCAACTCAGGAGCTTGAGAATAAAGCAGAACTCCTTCAAGCAGgtgtgtatcaggattaattggctctgctaaaggctttactctttttcttt Alignment from Spaln_nt2Genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG gggtttaactgtatcaagatgcttacattggagtttttcttcacaatcagAAGTTTTCCCGCTACTACCTAACTAAGAAGCTACTCTCAAGCTCAACTCAGGAGCTTGAGAATAAAGCAGAACTCCTTCAAGCAGgtgtgtatcaggattaattggctctgctaaaggctttactctttttcttt Alignment from Pairagon AAGTTTGCCCGTTACTACCTGACCGAGAAGCTG-TCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG gggtttaactgtatcaagatgcttacattggagtttttcttcacaatcagAAGTTTTCCCGCTACTACCTAACTAAGAAGCTACTCTCAAGCT-CAACTCAGGAGCTTGAGAATAAAGCAGAACTCCTTCAAGCAGgtgtgtatcaggattaattggctctgctaaaggctttactctttttcttt Alignment from Exonerate_protein2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG gggtttaactgtatcaagatgcttacattggagtttttcttcacaatcagAAGTTTTCCCGCTACTACCTAACTAAGAAGCTACTCTCAAGCTCAACTCAGGAGCTTGAGAATAAAGCAGAACTCCTTCAAGCAGgtgtgtatcaggattaattggctctgctaaaggctttactctttttcttt Alignment from Exonerate_coding2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG gggtttaactgtatcaagatgcttacattggagtttttcttcacaatcagAAGTTTTCCCGCTACTACCTAACTAAGAAGCTACTCTCAAGCTCAACTCAGGAGCTTGAGAATAAAGCAGAACTCCTTCAAGCAGgtgtgtatcaggattaattggctctgctaaaggctttactctttttcttt Alignment from GeneWise AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG gggtttaactgtatcaagatgcttacattggagtttttcttcacaatcagAAGTTTTCCCGCTACTACCTAACTAAGAAGCTACTCTCAAGCTCAACTCAGGAGCTTGAGAATAAAGCAGAACTCCTTCAAGCAGgtgtgtatcaggattaattggctctgctaaaggctttactctttttcttt #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGC-CCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagatGCAAAGAATGGGGTTCCTGTCAGTCCCTCAGCAGG-CAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagatGCAAAGAATGGGGTTCCTGTCAGTCCCTCAGCAGGCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCCTCAGCAGGCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCCTCAGCAGGCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCCTCAGCAGGCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCCTCAGCAGGCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCCTCAGCAGGCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTT-CCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgacatgaatacttcagtgactatccagtcccacgtctgctctaccttagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCCTGCTA-CACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtaagtactggtgatagttcacagcatggaacagaggagccagttttctc Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgacatgaatacttcagtgactatccagtcccacgtctgctctaccttagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCCTGCTACACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtaagtactggtgatagttcacagcatggaacagaggagccagtcttgta Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacatgaatacttcagtgactatccagtcccacgtctgctctaccttagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCCTGCTACACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagtactggtgatagttcacagcatggaacagaggagccagttttctc Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacatgaatacttcagtgactatccagtcccacgtctgctctaccttagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCCTGCTACACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagtactggtgatagttcacagcatggaacagaggagccagttttctc Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacatgaatacttcagtgactatccagtcccacgtctgctctaccttagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCCTGCTACACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagtactggtgatagttcacagcatggaacagaggagccagttttctc Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacatgaatacttcagtgactatccagtcccacgtctgctctaccttagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCCTGCTACACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagtactggtgatagttcacagcatggaacagaggagccagttttctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacatgaatacttcagtgactatccagtcccacgtctgctctaccttagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCCTGCTACACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagtactggtgatagttcacagcatggaacagaggagccagttttctc #### Slit1_ID8233_6 --> 1 - 2 Original Alignment aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGG-GCCTTCCGTGCCCTACGGGGACTGGAGGTTct tgtcaaaactattcttctggtcactttcattctcccgctgcttgccctagaCAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGCGCCCTCCGTG-CCTACGCGGGTTGGATGTTctgtaagaggagtatgagggttaaattagagcatcaatactgttcttcaatg Alignment from CESAR aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct tgtcaaaactattcttctggtcactttcattctcccgctgcttgccctagaCAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGCGCCCTCCGTGCCTACGCGGGTTGGATGTTctgtaagaggagtatgagggttaaattagagcatcaatactgttcttcaatg Alignment from Spaln_aa2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgtcaaaactattcttctggtcactttcattctcccgctgcttgccctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGCGCCCTCCGTGCCTACGCGGGTTGGATGTTCTgtaagaggagtatgagggttaaattagagcatcaatactgttcttcaatg Alignment from Spaln_nt2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGG-GCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgtcaaaactattcttctggtcactttcattctcccgctgcttgccctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGCGCCCTCCGTG-CCTACGCGGGTTGGATGTTCTgtaagaggagtatgagggttaaattagagcatcaatactgttcttcaatg Alignment from Pairagon ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGG-GCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgtcaaaactattcttctggtcactttcattctcccgctgcttgccctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGCGCCCTCCGTG-CCTACGCGGGTTGGATGTTCTgtaagaggagtatgagggttaaattagagcatcaatactgttcttcaatg Alignment from Exonerate_protein2genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgtcaaaactattcttctggtcactttcattctcccgctgcttgccctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGCGCCCTCCGTGCCTACGCGGGTTGGATGTTCTgtaagaggagtatgagggttaaattagagcatcaatactgttcttcaatg Alignment from Exonerate_coding2genome tgtcaaaactattcttctggtcactttcattctcccgctgcttgccctagacagctggacaagaaccgcattagctgcatcaaggaagggcgccctccgtgcctacgcgggttggatgttctgtaagaggagtatgagggttaaattagagcatcaatactgttcttcaatg Alignment from GeneWise ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgtcaaaactattcttctggtcactttcattctcccgctgcttgccctagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGCGCCCTCCGTGCCTACGCGGGTTGGATGTTCTgtaagaggagtatgagggttaaattagagcatcaatactgttcttcaatg #### Slk_ID10264_16 --> 0 - 0 Original Alignment GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGA-CAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatctatgggcatgagtttagttctgggaccgcgtctgctctctctgcagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGACGAGA-TCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtatgtgacagttcaatttctttacctcaatttaagatgtatgttaaaac Alignment from CESAR GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatctatgggcatgagtttagttctgggaccgcgtctgctctctctgcagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGACGAGATCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtatgtgacagttcaatttctttacctcaatttaagatgtatgttaaaac Alignment from Spaln_aa2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatctatgggcatgagtttagttctgggaccgcgtctgctctctctgcagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGACGAGATCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtatgtgacagttcaatttctttacctcaatttaagatgtatgttaaaac Alignment from Spaln_nt2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatctatgggcatgagtttagttctgggaccgcgtctgctctctctgcagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGACGAGATCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtatgtgacagttcaatttctttacctcaatttaagatgtatgttaaaac Alignment from Pairagon GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatctatgggcatgagtttagttctgggaccgcgtctgctctctctgcagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGACGAGATCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtatgtgacagttcaatttctttacctcaatttaagatgtatgttaaaac Alignment from Exonerate_protein2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatctatgggcatgagtttagttctgggaccgcgtctgctctctctgcagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGACGAGATCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtatgtgacagttcaatttctttacctcaatttaagatgtatgttaaaac Alignment from Exonerate_coding2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatctatgggcatgagtttagttctgggaccgcgtctgctctctctgcagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGACGAGATCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtatgtgacagttcaatttctttacctcaatttaagatgtatgttaaaac Alignment from GeneWise GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatctatgggcatgagtttagttctgggaccgcgtctgctctctctgcagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGACGAGATCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtatgtgacagttcaatttctttacctcaatttaagatgtatgttaaaac #### Slk_ID10265_17 --> 0 - 0 Original Alignment TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAG-AGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAACAGGATGT-TCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from CESAR TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAACAGGATGTTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Spaln_aa2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAACAGGATGTTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Spaln_nt2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAG-AGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAACAGGAT-GTTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Pairagon TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAG-AGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAACAGGAT-GTTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Exonerate_protein2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAACAGGATGTTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Exonerate_coding2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAACAGGATGTTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from GeneWise TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAACAGGATGTTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac aatgatcacccagaaactggggatctctcaatcttttctgctctcctaagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTA-TGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaagtattctttctattctttctaatcatagagtgttacagttgatcca Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac aatgatcacccagaaactggggatctctcaatcttttctgctctcctaagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaagtattctttctattctttctaatcatagagtgttacagttgatcca Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aatgatcacccagaaactggggatctctcaatcttttctgctctcctaagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattctttctaatcatagagtgttacagttgatcca Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aatgatcacccagaaactggggatctctcaatcttttctgctctcctaagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattctttctaatcatagagtgttacagttgatcca Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aatgatcacccagaaactggggatctctcaatcttttctgctctcctaagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTA-TGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattctttctaatcatagagtgttacagttgatcca Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aatgatcacccagaaactggggatctctcaatcttttctgctctcctaagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattctttctaatcatagagtgttacagttgatcca Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aatgatcacccagaaactggggatctctcaatcttttctgctctcctaagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattctttctaatcatagagtgttacagttgatcca Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aatgatcacccagaaactggggatctctcaatcttttctgctctcctaagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattctttctaatcatagagtgttacagttgatcca #### Smc3_ID11322_10 --> 0 - 0 Original Alignment CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAA-CTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACCTAAGGG-TGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from CESAR CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACCTAAGGGTGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Spaln_aa2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACCTAAGGGTGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Spaln_nt2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACCTAAGGGTGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Pairagon CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACCTAAGGGTGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Exonerate_protein2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACCTAAGGGTGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Exonerate_coding2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACCTAAGGGTGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from GeneWise CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACCTAAGGGTGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATG-AAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacttgcaactcagaagtgcactttccctccccacttgtaccctccagGATACTGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAA-AGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtgagtcacagtgcacagcacaaaaagaaaactgatcagatttctgtgta Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacttgcaactcagaagtgcactttccctccccacttgtaccctccagGATACTGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtgagtcacagtgcacagcacaaaaagaaaactgatcagatttctgtgta Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacttgcaactcagaagtgcactttccctccccacttgtaccctccagGATACTGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtgagtcacagtgcacagcacaaaaagaaaactgatcagatttctgtgta Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacttgcaactcagaagtgcactttccctccccacttgtaccctccagGATACTGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtgagtcacagtgcacagcacaaaaagaaaactgatcagatttctgtgta Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacttgcaactcagaagtgcactttccctccccacttgtaccctccagGATACTGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtgagtcacagtgcacagcacaaaaagaaaactgatcagatttctgtgta Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacttgcaactcagaagtgcactttccctccccacttgtaccctccagGATACTGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtgagtcacagtgcacagcacaaaaagaaaactgatcagatttctgtgta Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacttgcaactcagaagtgcactttccctccccacttgtaccctccagGATACTGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtgagtcacagtgcacagcacaaaaagaaaactgatcagatttctgtgta Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacttgcaactcagaagtgcactttccctccccacttgtaccctccagGATACTGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtgagtcacagtgcacagcacaaaaagaaaactgatcagatttctgtgta #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAG-GAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaaggtctgaaacctagaattgaggcagcttgtcttctgcagGTGTTCCAAAAACTGGAGCAATGCAATACAGAATTGAAGACATATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGCGAACTAG-TAGC---CATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtgagtaatagtttattctagtgtgcagtatgaatggatacacaggttgc Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaaggtctgaaacctagaattgaggcagcttgtcttctgcagGTGTTCCAAAAACTGGAGCAATGCAATACAGAATTGAAGACATATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGCGA---ACTAGTAGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtgagtaatagtttattctagtgtgcagtatgaatggatacacaggttgc Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaaggtctgaaacctagaattgaggcagcttgtcttctgcagGTGTTCCAAAAACTGGAGCAATGCAATACAGAATTGAAGACATATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGCGA---ACTAGTAGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtgagtaatagtttattctagtgtgcagtatgaatggatacacaggttgc Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaaggtctgaaacctagaattgaggcagcttgtcttctgcagGTGTTCCAAAAACTGGAGCAATGCAATACAGAATTGAAGACATATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGCGA---ACTAGTAGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtgagtaatagtttattctagtgtgcagtatgaatggatacacaggttgc Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAG-GAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaaggtctgaaacctagaattgaggcagcttgtcttctgcagGTGTTCCAAAAACTGGAGCAATGCAATACAGAATTGAAGACATATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGCGAAC----TAGTAGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtgagtaatagtttattctagtgtgcagtatgaatggatacacaggttgc Alignment from Exonerate_protein2genome CCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAGTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ATTATATTAAAGGTCTGAAACCTAGAATTGAGGCAGCTTGTCTTCTGCAGGTGTTCCAAAAACTGGAGCAATGCAATACAGAATTGAAGACATATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGCGAACTAGT---AGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtgagtaatagtttattctagtgtgcagtatgaatggatacacaggttgc Alignment from Exonerate_coding2genome CCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAGTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ATTATATTAAAGGTCTGAAACCTAGAATTGAGGCAGCTTGTCTTCTGCAGGTGTTCCAAAAACTGGAGCAATGCAATACAGAATTGAAGACATATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGCGAACTAGT---AGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtgagtaatagtttattctagtgtgcagtatgaatggatacacaggttgc Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaaggtctgaaacctagaattgaggcagcttgtcttctgcagGTGTTCCAAAAACTGGAGCAATGCAATACAGAATTGAAGACATATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGCGAACTAGT---AGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtgagtaatagtttattctagtgtgcagtatgaatggatacacaggttgc #### Snx15_ID1465_7 --> 2 - 1 Original Alignment aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAG-GAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCT------GCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg tggatgaataggtccccaccccaagaggcccacgatctccttccctccagcaAGTACTGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTCGGGGCTAAGAAGCTGGATCATCGAACCCTGGG-ACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGTGAGCCTGCTCCAGGTCCCCCTTATCTTGGCCAGGCAGCAGAGCTTATCACTCAAACTGTTAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTTCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTggtaagtagtaaggtagttaagcagaacacacaaatcccaattatgttatc Alignment from CESAR aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCA------GCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg tggatgaataggtccccaccccaagaggcccacgatctccttccctccagcaAGTACTGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTCGGGGCTAAGAAGCTGGATCATCGAACCCTGGGACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGTGAGCCTGCTCCAGGTCCCCCTTATCTTGGCCAGGCAGCAGAGCTTATCACTCAAACTGTTAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTTCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTggtaagtagtaaggtagttaagcagaacacacaaatcccaattatgttatc Alignment from Spaln_aa2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCC------CCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG tggatgaataggtccccaccccaagaggcccacgatctccttccctccagCAAGTACTGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTCGGGGCTAAGAAGCTGGATCATCGAACCCTGGGACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGTGAGCCTGCTCCAGGTCCCCCTTATCTTGGCCAGGCAGCAGAGCTTATCACTCAAACTGTTAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTTCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtaagtagtaaggtagttaagcagaacacacaaatcccaattatgttatc Alignment from Spaln_nt2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAG-GAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGC------TTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG tggatgaataggtccccaccccaagaggcccacgatctccttccctccagCAAGTACTGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTCGGGGCTAAGAAGCTGGATCATCGAACCCTGGGA-CCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGTGAGCCTGCTCCAGGTCCCCCTTATCTTGGCCAGGCAGCAGAGCTTATCACTCAAACTGTTAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTTCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtaagtagtaaggtagttaagcagaacacacaaatcccaattatgttatc Alignment from Pairagon AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCA-GGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAG------CTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG tggatgaataggtccccaccccaagaggcccacgatctccttccctccagCAAGTACTGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTCGGGGCTAAGAAGCTGGATCATCGAACCCTGGGA-CCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGTGAGCCTGCTCCAGGTCCCCCTTATCTTGGCCAGGCAGCAGAGCTTATCACTCAAACTGTTAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTTCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtaagtagtaaggtagttaagcagaacacacaaatcccaattatgttatc Alignment from Exonerate_protein2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG tggatgaataggtccccaccccaagaggcccacgatctccttccctccagCAAGTACTGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTCGGGGCTAAGAAGCTGGATCATCGAACCCTGGGACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGTGAGCCTGCTCCAGGTCCCCCTTATCTTGGCCAGGCAGCAGAGCTTATCACTCAAACTGTTAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTTCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtaagtagtaaggtagttaagcagaacacacaaatcccaattatgttatc Alignment from Exonerate_coding2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG tggatgaataggtccccaccccaagaggcccacgatctccttccctccagCAAGTACTGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTCGGGGCTAAGAAGCTGGATCATCGAACCCTGGGACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGTGAGCCTGCTCCAGGTCCCCCTTATCTTGGCCAGGCAGCAGAGCTTATCACTCAAACTGTTAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTTCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtaagtagtaaggtagttaagcagaacacacaaatcccaattatgttatc Alignment from GeneWise AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG tggatgaataggtccccaccccaagaggcccacgatctccttccctccagCAAGTACTGGCCCCAGCCCAACCCATCCTGGTGAGTTAACTGCGATTGAGGTCGGGGCTAAGAAGCTGGATCATCGAACCCTGGGACCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGTGAGCCTGCTCCAGGTCCCCCTTATCTTGGCCAGGCAGCAGAGCTTATCACTCAAACTGTTAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTTCAAGGCTACCAAGACGGGGTTCACATCCTTTTGCAGGGTGTTTCTGgtaagtagtaaggtagttaagcagaacacacaaatcccaattatgttatc #### Snx15_ID1466_6 --> 2 - 1 Original Alignment tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTT-CTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgtttccatcccccggataagtcttggttatattttttccttcccccagtaGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGAACATCCTCTTCAGCT-TGACAGTACGGAGGAGGCCTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGTGggtaagtttggatggaggggcagtcattaatgccctgaagaactccattag Alignment from CESAR tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgtttccatcccccggataagtcttggttatattttttccttcccccagtaGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGAACATCCTCTTCAGCTTGACAGTACGGAGGAGGCCTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGTGggtaagtttggatggaggggcagtcattaatgccctgaagaactccattag Alignment from Spaln_aa2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccatcccccggataagtcttggttatattttttccttcccccagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGAACATCCTCTTCAGCTTGACAGTACGGAGGAGGCCTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGTGGgtaagtttggatggaggggcagtcattaatgccctgaagaactccattag Alignment from Spaln_nt2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTC-TCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccatcccccggataagtcttggttatattttttccttcccccagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGAACATCCTCTTCAGCT-TGACAGTACGGAGGAGGCCTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGTGGgtaagtttggatggaggggcagtcattaatgccctgaagaactccattag Alignment from Pairagon TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGG-CCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccatcccccggataagtcttggttatattttttccttcccccagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGAACATCCTCTTCAGCT-TGACAGTACGGAGGAGGCCTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGTGGgtaagtttggatggaggggcagtcattaatgccctgaagaactccattag Alignment from Exonerate_protein2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccatcccccggataagtcttggttatattttttccttcccccagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGAACATCCTCTTCAGCTTGACAGTACGGAGGAGGCCTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGTGGgtaagtttggatggaggggcagtcattaatgccctgaagaactccattag Alignment from Exonerate_coding2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccatcccccggataagtcttggttatattttttccttcccccagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGAACATCCTCTTCAGCTTGACAGTACGGAGGAGGCCTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGTGGgtaagtttggatggaggggcagtcattaatgccctgaagaactccattag Alignment from GeneWise TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgtttccatcccccggataagtcttggttatattttttccttcccccagTAGACCCTCTACCATCTGGTCCTGCTCATGAGGCCCTCGAACATCCTCTTCAGCTTGACAGTACGGAGGAGGCCTCTGGTACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCAAAAGTGGgtaagtttggatggaggggcagtcattaatgccctgaagaactccattag #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTAT-ACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg gttttacccagctcttgctaaggtctgcgcatcatgcctctccccatcagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATCACTCACCGGA-TCTCTTCCAGGATCTCGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTggtgagttttagactctgtacctctccagcttatgacatccagaatctcca Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg gttttacccagctcttgctaaggtctgcgcatcatgcctctccccatcagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATCACTCACCGGATCTCTTCCAGGATCTCGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTggtgagttttagactctgtacctctccagcttatgacatccagaatctcca Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gttttacccagctcttgctaaggtctgcgcatcatgcctctccccatcagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATCACTCACCGGATCTCTTCCAGGATCTCGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagttttagactctgtacctctccagcttatgacatccagaatctcca Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTAT-ACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gttttacccagctcttgctaaggtctgcgcatcatgcctctccccatcagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATCACTCACCG-GATCTCTTCCAGGATCTCGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagttttagactctgtacctctccagcttatgacatccagaatctcca Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTAT-ACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gttttacccagctcttgctaaggtctgcgcatcatgcctctccccatcagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATCACTCACCG-GATCTCTTCCAGGATCTCGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagttttagactctgtacctctccagcttatgacatccagaatctcca Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gttttacccagctcttgctaaggtctgcgcatcatgcctctccccatcagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATCACTCACCGGATCTCTTCCAGGATCTCGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagttttagactctgtacctctccagcttatgacatccagaatctcca Alignment from Exonerate_coding2genome GAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gttttacccagctcttgctaaggtctgcgcatcatgcctctccccatCAGGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATCACTCACCGGATCTCTTCCAGGATCTCGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagttttagactctgtacctctccagcttatgacatccagaatctcca Alignment from GeneWise ---TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gttttacccagCTCTTGCTAAGGTCTGCGCATCATGCCTCTCCCCATCAGGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATCACTCACCGGATCTCTTCCAGGATCTCGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagttttagactctgtacctctccagcttatgacatccagaatctcca #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC----GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTCGGCA-TTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTCGGCATTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTCGGCATTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCAC----CGGCATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCT-ACGAG--GTGTTAGGTATGCAGATGAAATCATCATCACTGGTCGGCAT-TCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCT--GAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCAC----CGGCATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGG-----TGTTAGGTATGCAGATGAAATCATCATCACTGGTCGGCAT-TCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTCGGCATTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTcggcattcagggctcaaagtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGCATA---TCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTCGGCATTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTAT-GTGGAAAACGAA------GAGTACGCCGGCCTCATC agagtaacttgaggtaacaagaaattgtggctttctggcttctcttgtagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGA-TGAAGAGTATGAATATAACAGCCTTGTTgtatgttgcagtagagcagggttggagtgaaaaaaaagctaggaagggtg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTAC------GCCGGCCTCATC agagtaacttgaggtaacaagaaattgtggctttctggcttctcttgtagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtatgttgcagtagagcagggttggagtgaaaaaaaagctaggaagggtg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agagtaacttgaggtaacaagaaattgtggctttctggcttctcttgtagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtatgttgcagtagagcagggttggagtgaaaaaaaagctaggaagggtg Alignment from Spaln_nt2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGC------CGGCCTCATC agagtaacttgaggtaacaagaaattgtggctttctggcttctcttgtagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtatgttgcagtagagcagggttggagtgaaaaaaaagctaggaagggtg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCCGGCCTCATC agagtaacttgaggtaacaagaaattgtggctttctggcttctcttgtagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACA-----------------------------CTTATCgtagagatgaagagtatgaatataacagccttgttgtatgttgcagtagagcagggttggagtgaaaaaaaagctaggaagggtg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agagtaacttgaggtaacaagaaattgtggctttctggcttctcttgtagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtatgttgcagtagagcagggttggagtgaaaaaaaagctaggaagggtg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agagtaacttgaggtaacaagaaattgtggctttctggcttctcttgtagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtatgttgcagtagagcagggttggagtgaaaaaaaagctaggaagggtg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agagtaacttgaggtaacaagaaattgtggctttctggcttctcttgtagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtatgttgcagtagagcagggttggagtgaaaaaaaagctaggaagggtg #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTC-AATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg ccaaccagggttgggaatgcacacagatttttccttatatatttaaacaggTACCCCAATGTCCAATGTGC-TAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCATACATAAACACcggtaggtgtgtgaggtcctagctcctgacttatgtatttgtacggaggtat Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg ccaaccagggttgggaatgcacacagatttttccttatatatttaaacaggTACCCCAATGTCCAATGTGCTAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCATACATAAACACcggtaggtgtgtgaggtcctagctcctgacttatgtatttgtacggaggtat Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ccaaccagggttgggaatgcacacagatttttccttatatatttaaacagGTACCCCAATGTCCAATGTGCTAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCATACATAAACACCGgtaggtgtgtgaggtcctagctcctgacttatgtatttgtacggaggtat Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ccaaccagggttgggaatgcacacagatttttccttatatatttaaacagGTACCCCAATGTCCAATGTGCTAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCATACATAAACACCGgtaggtgtgtgaggtcctagctcctgacttatgtatttgtacggaggtat Alignment from Pairagon ATACCCCAATGT-CAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ccaaccagggttgggaatgcacacagatttttccttatatatttaaacagGTACCCCAATGTCCAATGTGC-TAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCATACATAAACACCGgtaggtgtgtgaggtcctagctcctgacttatgtatttgtacggaggtat Alignment from Exonerate_protein2genome ccaaccagggttgggaatgcacacagatttttccttatatatttaaacaggtaccccaatgtccaatgtgctaacttcaccaccagctggagagatgggctagcctttaatgccatcatacataaacaccggtaggtgtgtgaggtcctagctcctgacttatgtatttgtacggaggtat Alignment from Exonerate_coding2genome ccaaccagggttgggaatgcacacagatttttccttatatatttaaacaggtaccccaatgtccaatgtgctaacttcaccaccagctggagagatgggctagcctttaatgccatcatacataaacaccggtaggtgtgtgaggtcctagctcctgacttatgtatttgtacggaggtat Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ccaaccagggttgggaatgcacacagatttttccttatatatttaaacagGTACCCCAATGTCCAATGTGCTAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCATACATAAACACCGgtaggtgtgtgaggtcctagctcctgacttatgtatttgtacggaggtat #### Sptbn2_ID611_6 --> 1 - 1 Original Alignment gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACAC-TACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAg tcaaaatggcaatagcacaacaggatatctggctttctgctttcccataggCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACCTACAATTTGC-GAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGggtgagatggattaataagccagttgataacaagacagaggctactatgaa Alignment from CESAR gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAg tcaaaatggcaatagcacaacaggatatctggctttctgctttcccataggCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACCTACAATTTGCGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGggtgagatggattaataagccagttgataacaagacagaggctactatgaa Alignment from Spaln_aa2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatagcacaacaggatatctggctttctgctttcccatagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACCTACAATTTGCGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtgagatggattaataagccagttgataacaagacagaggctactatgaa Alignment from Spaln_nt2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatagcacaacaggatatctggctttctgctttcccatagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACCTACAATTTGCGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtgagatggattaataagccagttgataacaagacagaggctactatgaa Alignment from Pairagon GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACA-CTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatagcacaacaggatatctggctttctgctttcccatagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACCTACAATTTGC-GAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtgagatggattaataagccagttgataacaagacagaggctactatgaa Alignment from Exonerate_protein2genome tcaaaatggcaatagcacaacaggatatctggctttctgctttcccataggccagatctgttggattttgagtccctgaaaaagtgtaatgtccacctacaatttgcgaatgctttcaatcttgctgaaaaggaacttggccttagaagaatcctggattctgagggtgagatggattaataagccagttgataacaagacagaggctactatgaa Alignment from Exonerate_coding2genome tcaaaatggcaatagcacaacaggatatctggctttctgctttcccataggccagatctgttggattttgagtccctgaaaaagtgtaatgtccacctacaatttgcgaatgctttcaatcttgctgaaaaggaacttggccttagaagaatcctggattctgagggtgagatggattaataagccagttgataacaagacagaggctactatgaa Alignment from GeneWise GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatagcacaacaggatatctggctttctgctttcccatagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACCTACAATTTGCGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtgagatggattaataagccagttgataacaagacagaggctactatgaa #### Sptbn2_ID612_7 --> 2 - 0 Original Alignment atGTGAATGTAGACCAGCCCGACGAG-AAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagatGTGAATGTAGATCAGCCTGATGAGCCAGTCTGTCA-TACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from CESAR atGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagatGTGAATGTAGATCAGCCTGATGAGCCAGTCTGTCATACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Spaln_aa2Genome ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagATGTGAATGTAGATCAGCCTGATGAGCCAGTCTGTCATACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Spaln_nt2Genome ATGTGAATGTAGACCAGCCCGACGAGA-AGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagATGTGAATGTAGATCAGCCTGATGAGCCAGTCTGTCAT-ACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Pairagon ATGTGAATGTAGACCAGCCCGACGAG-AAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagATGTGAATGTAGATCAGCCTGATGAGCCAGTCTGTCAT-ACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Exonerate_protein2genome agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagatgtgaatgtagatcagcctgatgagccagtctgtcatacctatgtgtccacctactaccactacttctccaggatgaaggctctatcagtggaaggaaaaagaactgggaaggtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Exonerate_coding2genome agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagatgtgaatgtagatcagcctgatgagccagtctgtcatacctatgtgtccacctactaccactacttctccaggatgaaggctctatcagtggaaggaaaaagaactgggaaggtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from GeneWise ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagATGTGAATGTAGATCAGCCTGATGAGCCAGTCTGTCATACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTA-TTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttactcaagcaaacctgaagttatgaccaggttttggcttgtttcagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTGCTTGG-ACAAGCGCTTGCTGATTACGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGaggtaagaccatatagttatctttagcccgcttggtcatttatctactttag Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttactcaagcaaacctgaagttatgaccaggttttggcttgtttcagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTGCTTGGACAAGCGCTTGCTGATTACGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGaggtaagaccatatagttatctttagcccgtcttctctgctgtttcttccag Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagcaaacctgaagttatgaccaggttttggcttgtttcagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTGCTTGGACAAGCGCTTGCTGATTACGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaagaccatatagttatctttagcccgcttggtcatttatctactttag Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagcaaacctgaagttatgaccaggttttggcttgtttcagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTGCTTGGACAAGCGCTTGCTGATTACGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaagaccatatagttatctttagcccgcttggtcatttatctactttag Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagcaaacctgaagttatgaccaggttttggcttgtttcagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTGCTTGGACAAGCGCTTGCTGATTACGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaagaccatatagttatctttagcccgcttggtcatttatctactttag Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagcaaacctgaagttatgaccaggttttggcttgtttcagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTGCTTGGACAAGCGCTTGCTGATTACGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaagaccatatagttatctttagcccgcttggtcatttatctactttag Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagcaaacctgaagttatgaccaggttttggcttgtttcagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTGCTTGGACAAGCGCTTGCTGATTACGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaagaccatatagttatctttagcccgcttggtcatttatctactttag Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactcaagcaaacctgaagttatgaccaggttttggcttgtttcagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTGCTTGGACAAGCGCTTGCTGATTACGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaagaccatatagttatctttagcccgcttggtcatttatctactttag #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAG-AAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGCAAGGCCTATG-TGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGCAAGGCCTATGTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGCAAGGCCTATGTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGCAAGGCCTATGTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAG-AAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGCAAGGCCTATG-TGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGCAAGGCCTATGTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGCAAGGCCTATGTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGCAAGGCCTATGTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCC-TGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aacaaacctttaaagtctctatacaaccacaagcccatgtcttcctgcagttTTAGAGGTGCTTGTATTTGGGAAAGATGCAGGGATGGCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCACTGGGAAGAGC-ATTTGGTGCATTAGATAAGCTCACCGCAgtaagtgctgtagaggctcacaaacctagcagtgtcattctcaagccaat Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aacaaacctttaaagtctctatacaaccacaagcccatgtcttcctgcagttTTAGAGGTGCTTGTATTTGGGAAAGATGCAGGGATGGCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCACTGGGAAGAGCATTTGGTGCATTAGATAAGCTCACCGCAgtaagtgctgtagaggctcacaaacctagcagtgtcattctcaagccaat Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aacaaacctttaaagtctctatacaaccacaagcccatgtcttcctgcagTTTTAGAGGTGCTTGTATTTGGGAAAGATGCAGGGATGGCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCACTGGGAAGAGCATTTGGTGCATTAGATAAGCTCACCGCAgtaagtgctgtagaggctcacaaacctagcagtgtcattctcaagccaat Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGC-CTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aacaaacctttaaagtctctatacaaccacaagcccatgtcttcctgcagTTTTAGAGGTGCTTGTATTTGGGAAAGATGCAGGGATGGCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCACTGGGAAGAGCATTT-GGTGCATTAGATAAGCTCACCGCAgtaagtgctgtagaggctcacaaacctagcagtgtcattctcaagccaat Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGC-CTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aacaaacctttaaagtctctatacaaccacaagcccatgtcttcctgcagTTTTAGAGGTGCTTGTATTTGGGAAAGATGCAGGGATGGCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCACTGGGAAGAGCATTT-GGTGCATTAGATAAGCTCACCGCAgtaagtgctgtagaggctcacaaacctagcagtgtcattctcaagccaat Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aacaaacctttaaagtctctatacaaccacaagcccatgtcttcctgcagTTTTAGAGGTGCTTGTATTTGGGAAAGATGCAGGGATGGCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCACTGGGAAGAGCATTTGGTGCATTAGATAAGCTCACCGCAgtaagtgctgtagaggctcacaaacctagcagtgtcattctcaagccaat Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aacaaacctttaaagtctctatacaaccacaagcccatgtcttcctgcagTTTTAGAGGTGCTTGTATTTGGGAAAGATGCAGGGATGGCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCACTGGGAAGAGCATTTGGTGCATTAGATAAGCTCACCGCAgtaagtgctgtagaggctcacaaacctagcagtgtcattctcaagccaat Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aacaaacctttaaagtctctatacaaccacaagcccatgtcttcctgcagTTTTAGAGGTGCTTGTATTTGGGAAAGATGCAGGGATGGCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCACTGGGAAGAGCATTTGGTGCATTAGATAAGCTCACCGCAgtaagtgctgtagaggctcacaaacctagcagtgtcattctcaagccaat #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAG-GAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg atattctactcccattggttcccactctgattcctttctgccctttgcagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGCGGGGAGG-ACAGAGGAGACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGGAGCCTAGTGGATGGCCAAAGAGTACTGGACACTGCTTGGGATgggtaataattgacagtaaagcaaatgatgctaatactggcaaatgaccctc Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg atattctactcccattggttcccactctgattcctttctgccctttgcagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGCGGGGAGGACAGAGGAGACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGGAGCCTAGTGGATGGCCAAAGAGTACTGGACACTGCTTGGGATgggtaataattgacagtaaagcaaatgatgctaatactggcaaatgaccctt Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactcccattggttcccactctgattcctttctgccctttgcagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGCGGGGAGGACAGAGGAGACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGGAGCCTAGTGGATGGCCAAAGAGTACTGGACACTGCTTGGGATGGgtaataattgacagtaaagcaaatgatgctaatactggcaaatgaccctc Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactcccattggttcccactctgattcctttctgccctttgcagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGCGGGGAGGACAGAGGAGACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGGAGCCTAGTGGATGGCCAAAGAGTACTGGACACTGCTTGGGATGGgtaataattgacagtaaagcaaatgatgctaatactggcaaatgaccctc Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactcccattggttcccactctgattcctttctgccctttgcagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGCGGGGAGGACAGAGGAGACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGGAGCCTAGTGGATGGCCAAAGAGTACTGGACACTGCTTGGGATGGgtaataattgacagtaaagcaaatgatgctaatactggcaaatgaccctc Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactcccattggttcccactctgattcctttctgccctttgcagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGCGGGGAGGACAGAGGAGACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGGAGCCTAGTGGATGGCCAAAGAGTACTGGACACTGCTTGGGATGGgtaataattgacagtaaagcaaatgatgctaatactggcaaatgaccctc Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactcccattggttcccactctgattcctttctgccctttgcagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGCGGGGAGGACAGAGGAGACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGGAGCCTAGTGGATGGCCAAAGAGTACTGGACACTGCTTGGGATGGgtaataattgacagtaaagcaaatgatgctaatactggcaaatgaccctc Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctactcccattggttcccactctgattcctttctgccctttgcagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGCGGGGAGGACAGAGGAGACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGGAGCCTAGTGGATGGCCAAAGAGTACTGGACACTGCTTGGGATGGgtaataattgacagtaaagcaaatgatgctaatactggcaaatgaccctc #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAG-AGACTTGAACAGAGCAATGTCCCCGAAGGACCT cttttgaaactcagccagcatttaaatcattttcacttgtatcttaacagCCCCTGTTGGAGCAGCAGCAGGC-TGAACAAGGCAATGTGCCTGAGGGACCTgtaggtttagctgggcttgagtgtgatatcgaaaggtgatcatgcagaaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cttttgaaactcagccagcatttaaatcattttcacttgtatcttaacagCCCCTGTTGGAGCAGCAGCAGGCTGAACAAGGCAATGTGCCTGAGGGACCTgtaggtttagctgggcttgagtgtgatatcgaaaggtgatcatgcagaaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cttttgaaactcagccagcatttaaatcattttcacttgtatcttaacagCCCCTGTTGGAGCAGCAGCAGGCTGAACAAGGCAATGTGCCTGAGGGACCTgtaggtttagctgggcttgagtgtgatatcgaaaggtgatcatgcagaaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cttttgaaactcagccagcatttaaatcattttcacttgtatcttaacagCCCCTGTTGGAGCAGCAGCAGGCTGAACAAGGCAATGTGCCTGAGGGACCTgtaggtttagctgggcttgagtgtgatatcgaaaggtgatcatgcagaaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cttttgaaactcagccagcatttaaatcattttcacttgtatcttaacagCCCCTGTTGGAGCAGCAGCAGGCTGAACAAGGCAATGTGCCTGAGGGACCTgtaggtttagctgggcttgagtgtgatatcgaaaggtgatcatgcagaaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cttttgaaactcagccagcatttaaatcattttcacttgtatcttaacagCCCCTGTTGGAGCAGCAGCAGGCTGAACAAGGCAATGTGCCTGAGGGACCTgtaggtttagctgggcttgagtgtgatatcgaaaggtgatcatgcagaaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cttttgaaactcagccagcatttaaatcattttcacttgtatcttaacagCCCCTGTTGGAGCAGCAGCAGGCTGAACAAGGCAATGTGCCTGAGGGACCTgtaggtttagctgggcttgagtgtgatatcgaaaggtgatcatgcagaaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cttttgaaactcagccagcatttaaatcattttcacttgtatcttaacagCCCCTGTTGGAGCAGCAGCAGGCTGAACAAGGCAATGTGCCTGAGGGACCTgtaggtttagctgggcttgagtgtgatatcgaaaggtgatcatgcagaaa #### Sptbn2_ID639_34 --> 1 - 2 Original Alignment gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGC-AAACATGTTTTCAAGCTGgg cactccccctagcctctaacattgagagaagaacttttctttccactcaggTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCCAAAC-TGTTTTCAAACTGgggtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from CESAR gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg cactccccctagcctctaacattgagagaagaacttttctttccactcaggTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCCAAACTGTTTTCAAACTGgggtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Spaln_aa2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCCAAACTGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Spaln_nt2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATA------TGAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCCAAACTGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Pairagon -----------------------------------------------CAGGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG CACTCCCCCTAGCCTCTAACATTGAGAGAAGAACTTTTCTTTCCACTCAGGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCCAAACTGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Exonerate_protein2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCCAAACTGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Exonerate_coding2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCCAAACTGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from GeneWise GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCCAAACTGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt #### Sptbn2_ID640_35 --> 1 - 0 Original Alignment cTTACAGGATGGCAAAGAATACCTA-TTCCAGGCCAAGGACGAG gaaactgaaagagagatttgatgctgtgtcatatttaaaaccccaaccagaTTACAGGATGGTAAAGAATACCTACTTCC-AGCCCAAGATGAGgtgggtcacttgctactacctgtggctttctttactaacagccagtcttc Alignment from CESAR cTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG gaaactgaaagagagatttgatgctgtgtcatatttaaaaccccaaccagaTTACAGGATGGTAAAGAATACCTACTTCCAGCCCAAGATGAGgtgggtcacttgctactacctgtggctttctttactaacagccagtcttc Alignment from Spaln_aa2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG gaaactgaaagagagatttgatgctgtgtcatatttaaaaccccaaccagATTACAGGATGGTAAAGAATACCTACTTCCAGCCCAAGATGAGgtgggtcacttgctactacctgtggctttctttactaacagccagtcttc Alignment from Spaln_nt2Genome CTTACAGGATGGCAAAGAATACCTA-TTCCAGGCCAAGGACGAG gaaactgaaagagagatttgatgctgtgtcatatttaaaaccccaaccagATTACAGGATGGTAAAGAATACCTACTTCCAGCCCAA-GATGAGgtgggtcacttgctactacctgtggctttctttactaacagccagtcttc Alignment from Pairagon CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG gaaactgaaagagagatttgatgctgtgtcatatttaaaaccccaaccagATTACAGGATGGTAAAGAATACCTACTTCCAGCCCAAGATGAGgtgggtcacttgctactacctgtggctttctttactaacagccagtcttc Alignment from Exonerate_protein2genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG gaaactgaaagagagatttgatgctgtgtcatatttaaaaccccaaccagATTACAGGATGGTAAAGAATACCTACTTCCAGCCCAAGATGAGgtgggtcacttgctactacctgtggctttctttactaacagccagtcttc Alignment from Exonerate_coding2genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG gaaactgaaagagagatttgatgctgtgtcatatttaaaaccccaaccagATTACAGGATGGTAAAGAATACCTACTTCCAGCCCAAGATGAGgtgggtcacttgctactacctgtggctttctttactaacagccagtcttc Alignment from GeneWise CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG gaaactgaaagagagatttgatgctgtgtcatatttaaaaccccaaccagATTACAGGATGGTAAAGAATACCTACTTCCAGCCCAAGATGAGgtgggtcacttgctactacctgtggctttctttactaacagccagtcttc #### Ssh3_ID446_10 --> 0 - 2 Original Alignment TTG GGCTCTGAGTGG-AATGCTGCCAACCTGGAGGAACTTCAGAAAAACag TTAgtatggggtcctttattcattcttcaactattatcttctccatgcagGGCACTGAATGGCAATGCTGCCA-CCTAGAGGAGCTCCAAAAGAATaggtagctttgcttgctggctgtgagcccttattgacctcccctctcagctt Alignment from CESAR TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag TTAgtaaggggtcctttattcattcttcaactattatcttctccatgcagGGCACTGAATGGCAATGCTGCCACCTAGAGGAGCTCCAAAAGAATaggtagctttgcttgctggctgtgagcccttattgacctcccctctcagctt Alignment from Spaln_aa2Genome TTG------GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAGAGTAA TTAGTATGGGGTCCTTTATTCATTCTTCAACTATTATCTTCTCCATGCAGGGCACTGAATGgcaatgctgccacctagaggagctccaaaagaataggtagctttgcttgctggctgtgagcccttattgacctcccctctcagctt Alignment from Spaln_nt2Genome TTG GGCTCTGAGTGG-AATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtatggggtcctttattcattcttcaactattatcttctccatgcagGGCACTGAATGGCAATGCTGCC-ACCTAGAGGAGCTCCAAAAGAATAGgtagctttgcttgctggctgtgagcccttattgacctcccctctcagctt Alignment from Pairagon TT-----------------------------------------------GGGCTCTGAGTGG-AATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAGTATGGGGTCCTTTATTCATTCTTCAACTATTATCTTCTCCATGCAGGGCACTGAATGGCAATGCTGCC-ACCTAGAGGAGCTCCAAAAGAATAGgtagctttgcttgctggctgtgagcccttattgacctcccctctcagctt Alignment from Exonerate_protein2genome TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtatggggtcctttattcattcttcaactattatcttctccatgcagGGCACTGAATGGCAATGCTGCCACCTAGAGGAGCTCCAAAAGAATAGgtagctttgcttgctggctgtgagcccttattgacctcccctctcagctt Alignment from Exonerate_coding2genome ttagtatggggtcctttattcattcttcaactattatcttctccatgcagggcactgaatggcaatgctgccacctagaggagctccaaaagaataggtagctttgcttgctggctgtgagcccttattgacctcccctctcagctt Alignment from GeneWise TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtatggggtcctttattcattcttcaactattatcttctccatgcagGGCACTGAATGGCAATGCTGCCACCTAGAGGAGCTCCAAAAGAATAGgtagctttgcttgctggctgtgagcccttattgacctcccctctcagctt #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTG-GGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC atctctatcagcgataatacacttagacctctgttctctgactcttccagCTCCATCGAGCCTTAGAACTACACCTTCGGAT-TCCTTTA------TATCGTGACTTTATTGATAATCAGATGTTGCTTCTTATGGCCCACCAGGATCAGACATCTCGAATCTACCCACACCTCTACTTAgtaaggggtcctttattcattcttcaacaaaatgtattttccaacagGGC Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC atctctatcagcgataatacacttagacctctgttctctgactcttccagCTCCATCGAGCCTTAGAACTACACCTTCGGATTCCTTTA------TATCGTGACTTTATTGATAATCAGATGTTGCTTCTTATGGCCCACCAGGATCAGACATCTCGAATCTACCCACACCTCTACTTAgtaaggggtcctttattcattcttcaactattatcttctccatgcagGGC Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGGGCTCTGAGTGGAATGCTGCCAACCTGGAGGAA atctctatcagcgataatacacttagacctctgttctctgactcttccagCTCCATCGAGCCTTAGAACTACACCTTCGGATTCCTTTA------TATCGTGACTTTATTGATAATCAGATGTTGCTTCTTATGGCCCACCAGGATCAGACATCTCGAATCTACCCACACCTCTACTTAGTAAGGGGTCCTTTATTCATTCTTCAACAAAATgtattttccaacagggc Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC atctctatcagcgataatacacttagacctctgttctctgactcttccagCTCCATCGAGCCTTAGAACTACACCTTCGGATTCCTTT------ATATCGTGACTTTATTGATAATCAGATGTTGCTTCTTATGGCCCACCAGGATCAGACATCTCGAATCTACCCACACCTCTACTTAgtaaggggtcctttattcattcttcaacaaaatgtattttccaacagGGC Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTAC--------------------CGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC atctctatcagcgataatacacttagacctctgttctctgactcttccagCTCCATCGAGCCTTAGAAC--------------------------TACACCTTCGGATTCCTTTATATCGTGACTTTATTGATAATCAGATGTTGCTTCTTATGGCCCACCAGGATCAGACATCTCGAATCTACCCACACCTCTACTTAgtaaggggtcctttattcattcttcaacaaaatgtattttccaacagGGC Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC atctctatcagcgataatacacttagacctctgttctctgactcttccagCTCCATCGAGCCTTAGAACTACACCTTCGGATTCCTTTA------TATCGTGACTTTATTGATAATCAGATGTTGCTTCTTATGGCCCACCAGGATCAGACATCTCGAATCTACCCACACCTCTACTTAgtaaggggtcctttattcattcttcaacaaaatgtattttccaacagGGC Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC atctctatcagcgataatacacttagacctctgttctctgactcttccagCTCCATCGAGCCTTAGAACTACACCTTCGGATTCCTTTA------TATCGTGACTTTATTGATAATCAGATGTTGCTTCTTATGGCCCACCAGGATCAGACATCTCGAATCTACCCACACCTCTACTTAgtaaggggtcctttattcattcttcaacaaaatgtattttccaacagGGC Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC atctctatcagcgataatacacttagacctctgttctctgactcttccagCTCCATCGAGCCTTAGAACTACACCTTCGGATTCCTTTA------TATCGTGACTTTATTGATAATCAGATGTTGCTTCTTATGGCCCACCAGGATCAGACATCTCGAATCTACCCACACCTCTACTTAgtaaggggtcctttattcattcttcaacaaaatgtattttccaacagGGC #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAG-GTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG cgtgtttgctgctactaactaacaggtaactcagacttttcatgttttaggGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAACGTGTTAG-TACTAGTGATCTAGAAAGTGTTACTTCCAAAGAGgtaaaaataaagcagggtagctgccaattgttcctatctgacgcccccca Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG cgtgtttgctgctactaactaacaggtaactcagacttttcatgttttaggGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAACGTGTTAGTACTAGTGATCTAGAAAGTGTTACTTCCAAAGAGgtaaaaataaagcagggtagctgccaattgttcctatctgacgcccccca Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG cgtgtttgctgctactaactaacaggtaactcagacttttcatgttttagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAACGTGTTAGTACTAGTGATCTAGAAAGTGTTACTTCCAAAGAGgtaaaaataaagcagggtagctgccaattgttcctatctgacgcccccca Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG cgtgtttgctgctactaactaacaggtaactcagacttttcatgttttagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAACGTGTTAGTACTAGTGATCTAGAAAGTGTTACTTCCAAAGAGgtaaaaataaagcagggtagctgccaattgttcctatctgacgcccccca Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGAC--------ACCAGTGACCTGGACAGTGTCACTTCTAAAGAG cgtgtttgctgctactaactaacaggtaactcagacttttcatgttttagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCA--------ACGTGTTAGTACTAGTGATCTAGAAAGTGTTACTTCCAAAGAGgtaaaaataaagcagggtagctgccaattgttcctatctgacgcccccca Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG cgtgtttgctgctactaactaacaggtaactcagacttttcatgttttagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAACGTGTTAGTACTAGTGATCTAGAAAGTGTTACTTCCAAAGAGgtaaaaataaagcagggtagctgccaattgttcctatctgacgcccccca Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG cgtgtttgctgctactaactaacaggtaactcagacttttcatgttttagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAACGTGTTAGTACTAGTGATCTAGAAAGTGTTACTTCCAAAGAGgtaaaaataaagcagggtagctgccaattgttcctatctgacgcccccca Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG cgtgtttgctgctactaactaacaggtaactcagacttttcatgttttagGGCCTCAGAGCAGGAGAAGACAGAGCAGGCAATTCTGATAGAATTGTGGCAACGTGTTAGTACTAGTGATCTAGAAAGTGTTACTTCCAAAGAGgtaaaaataaagcagggtagctgccaattgttcctatctgacgcccccca #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTG-CACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca tatctggttgatcatctagggccaaggtccccatttttaccctcccataggGCCACATTGCAAGTATTGCCACCAGGCAT-TGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGGAGTGCTCTAGCATGGGCTACTTACTACCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAATCATTTCGACCACCCAATGCTGAGCCCACAcagtaattggcaggacagggcaaagcagaaaaataatgtggagcgtgtttgc Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca tatctggttgatcatctagggccaaggtccccatttttaccctcccataggGCCACATTGCAAGTATTGCCACCAGGCATTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGGAGTGCTCTAGCATGGGCTACTTACTACCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAATCATTTCGACCACCCAATGCTGAGCCCACAcagtaattggcaggacagggcaaagcagaaaaataatgtggagcgtgtttgc Alignment from Spaln_aa2Genome GTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTAC---CAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tatctggttgatcatctagggccaaggtccccatttttaccctcccatagggccacattgcaagtattgccaccagGCATTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGGAGTGCTCTAGCATGGGCTACTTACTACCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAATCATTTCGACCACCCAATGCTGAGCCCACACAgtaattggcaggacagggcaaagcagaaaaataatgtggagcgtgtttgc Alignment from Spaln_nt2Genome GCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tatctggttgatcatctagggccaaggtccccatttttaccctcccatagggccacattgcaagtattgccaccagGCAT-TGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGGAGTGCTCTAGCATGGGCTACTTACTACCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAATCATTTCGACCACCCAATGCTGAGCCCACACAgtaattggcaggacagggcaaagcagaaaaataatgtggagcgtgtttgc Alignment from Pairagon GGCCACACTGCAGGTATTG-CACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tatctggttgatcatctagggccaaggtccccatttttaccctcccatagGGCCACATTGCAAGTATTGCCACCAGGCAT-TGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGGAGTGCTCTAGCATGGGCTACTTACTACCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAATCATTTCGACCACCCAATGCTGAGCCCACACAgtaattggcaggacagggcaaagcagaaaaataatgtggagcgtgtttgc Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tatctggttgatcatctagggccaaggtccccatttttaccctcccatagGGCCACATTGCAAGTATTGCCACCAGGCATTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGGAGTGCTCTAGCATGGGCTACTTACTACCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAATCATTTCGACCACCCAATGCTGAGCCCACACAgtaattggcaggacagggcaaagcagaaaaataatgtggagcgtgtttgc Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tatctggttgatcatctagggccaaggtccccatttttaccctcccatagGGCCACATTGCAAGTATTGCCACCAGGCATTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGGAGTGCTCTAGCATGGGCTACTTACTACCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAATCATTTCGACCACCCAATGCTGAGCCCACACAgtaattggcaggacagggcaaagcagaaaaataatgtggagcgtgtttgc Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tatctggttgatcatctagggccaaggtccccatttttaccctcccatagGGCCACATTGCAAGTATTGCCACCAGGCATTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGGAGTGCTCTAGCATGGGCTACTTACTACCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAATCATTTCGACCACCCAATGCTGAGCCCACACAgtaattggcaggacagggcaaagcagaaaaataatgtggagcgtgtttgc #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGA-ATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcccactgatcacctgctctcaaagtctttagggttgcctttctcctcagcAGCTTAAGTGTGACGCCTGGTGGCAAAAGCCGACATCTTCA-GCCTCTCTCTATCCAGACTATGtggtaggcggtccaaacaataaggttcccaagcatacttggttgaccatcta Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcccactgatcacctgctctcaaagtctttagggttgcctttctcctcagcAGCTTAAGTGTGACGCCTGGTGGCAAAAGCCGACATCTTCAGCCTCTCTCTATCCAGACTATGtggtaggcggtccaaacaataaggttcccaagcatacttggttgaccatcta Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcccactgatcacctgctctcaaagtctttagggttgcctttctcctcagCAGCTTAAGTGTGACGCCTGGTGGCAAAAGCCGACATCTTCAGCCTCTCTCTATCCAGACTATGTGgtaggcggtccaaacaataaggttcccaagcatacttggttgaccatcta Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcccactgatcacctgctctcaaagtctttagggttgcctttctcctcagCAGCTTAAGTGTGACGCCTGGTGGCAAAAGCCGACATCTTCAGCCTCTCTCTATCCAGACTATGTGgtaggcggtccaaacaataaggttcccaagcatacttggttgaccatcta Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGA-ATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcccactgatcacctgctctcaaagtctttagggttgcctttctcctcagCAGCTTAAGTGTGACGCCTGGTGGCAAAAGCCGACATCTTC-AGCCTCTCTCTATCCAGACTATGTGgtaggcggtccaaacaataaggttcccaagcatacttggttgaccatcta Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcccactgatcacctgctctcaaagtctttagggttgcctttctcctcagCAGCTTAAGTGTGACGCCTGGTGGCAAAAGCCGACATCTTCAGCCTCTCTCTATCCAGACTATGTGgtaggcggtccaaacaataaggttcccaagcatacttggttgaccatcta Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcccactgatcacctgctctcaaagtctttagggttgcctttctcctcagCAGCTTAAGTGTGACGCCTGGTGGCAAAAGCCGACATCTTCAGCCTCTCTCTATCCAGACTATGTGgtaggcggtccaaacaataaggttcccaagcatacttggttgaccatcta Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcccactgatcacctgctctcaaagtctttagggttgcctttctcctcagCAGCTTAAGTGTGACGCCTGGTGGCAAAAGCCGACATCTTCAGCCTCTCTCTATCCAGACTATGTGgtaggcggtccaaacaataaggttcccaagcatacttggttgaccatcta #### Stambpl1_ID6902_9 --> 1 - 0 Original Alignment cACCGGCATTTTC-AGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgccaacatctcgttcttttcatagcACTGGTATCTTCCAGGCTCACCA-CGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgcggagacaccatgggaataggaatgggaagatgttcaatcatataaa Alignment from CESAR cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgccaacatctcgttcttttcatagcACTGGTATCTTCCAGGCTCACCACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgcggagacaccatgggaataggaatgggaagatgttcaatcatataaa Alignment from Spaln_aa2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgccaacatctcgttcttttcatagCACTGGTATCTTCCAGGCTCACCACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgcggagacaccatgggaataggaatgggaagatgttcaatcatataaa Alignment from Spaln_nt2Genome CACCGGCATTTTC-AGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgccaacatctcgttcttttcatagCACTGGTATCTTCCAGGCTCACC-ACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgcggagacaccatgggaataggaatgggaagatgttcaatcatataaa Alignment from Pairagon CACCGGCAT-TTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgccaacatctcgttcttttcatagCACTGGTATCTTCCAGGCTCACC-ACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgcggagacaccatgggaataggaatgggaagatgttcaatcatataaa Alignment from Exonerate_protein2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgccaacatctcgttcttttcatagCACTGGTATCTTCCAGGCTCACCACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgcggagacaccatgggaataggaatgggaagatgttcaatcatataaa Alignment from Exonerate_coding2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgccaacatctcgttcttttcatagCACTGGTATCTTCCAGGCTCACCACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgcggagacaccatgggaataggaatgggaagatgttcaatcatataaa Alignment from GeneWise CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgccaacatctcgttcttttcatagCACTGGTATCTTCCAGGCTCACCACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgcggagacaccatgggaataggaatgggaagatgttcaatcatataaa #### Stip1_ID1994_7 --> 2 - 2 Original Alignment ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGT-GAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa gttaatttgtctggcttttttatctaactgtgttgactgggcttttctagctGTTCACTTTGACAAGGGTGATTATAATGAATGTCGGGATCTCTGTCGAAAAGG-TATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTaagtgagccatcaaattcggaggcttaggcaaggcacctttcttactgccta Alignment from CESAR ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa gttaatttgtctggcttttttatctaactgtgttgactgggcttttctagctGTTCACTTTGACAAGGGTGATTATAATGAATGTCGGGATCTCTGTCGAAAAGGTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTaagtgagccatcaaattcggaggcttaggcaaggcacctttcttactgccta Alignment from Spaln_aa2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttaatttgtctggcttttttatctaactgtgttgactgggcttttctagCTGTTCACTTTGACAAGGGTGATTATAATGAATGTCGGGATCTCTGTCGAAAAGGTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtgagccatcaaattcggaggcttaggcaaggcacctttcttactgccta Alignment from Spaln_nt2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttaatttgtctggcttttttatctaactgtgttgactgggcttttctagCTGTTCACTTTGACAAGGGTGATTATAATGAATGTCGGGATCTCTGTCGAAAAGGTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtgagccatcaaattcggaggcttaggcaaggcacctttcttactgccta Alignment from Pairagon CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttaatttgtctggcttttttatctaactgtgttgactgggcttttctagCTGTTCACTTTGACAAGGGTGATTATAATGAATGTCGGGATCTCTGTCGAAAAGGTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtgagccatcaaattcggaggcttaggcaaggcacctttcttactgccta Alignment from Exonerate_protein2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttaatttgtctggcttttttatctaactgtgttgactgggcttttctagCTGTTCACTTTGACAAGGGTGATTATAATGAATGTCGGGATCTCTGTCGAAAAGGTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtgagccatcaaattcggaggcttaggcaaggcacctttcttactgccta Alignment from Exonerate_coding2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttaatttgtctggcttttttatctaactgtgttgactgggcttttctagCTGTTCACTTTGACAAGGGTGATTATAATGAATGTCGGGATCTCTGTCGAAAAGGTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtgagccatcaaattcggaggcttaggcaaggcacctttcttactgccta Alignment from GeneWise -------------------------------------------------GCTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA GTTAATTTGTCTGGCTTTTTTATCTAACTGTGTTGACTGGGCTTTTCTAGCTGTTCACTTTGACAAGGGTGATTATAATGAATGTCGGGATCTCTGTCGAAAAGGTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtgagccatcaaattcggaggcttaggcaaggcacctttcttactgccta #### Stx3_ID3300_6 --> 0 - 1 Original Alignment CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGC-AGCAAAGGGCGCATCCAACGGCAGCTTGAAATTa gactacaacaatatggtttgataggtgatatcacacttcttctctcccagCAGTCTATCCTCTCACAGAAA---GTGGAGGTGATGACTAAGTACAATGATGCCCAGGTAGATTTTCGAGAACGGCAGCAAAGGCC-CATCCAACATCAACTTGAAATTagtaaggtttgagtaccagtggatattgtgccatgtagctggccaccctta Alignment from CESAR CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTa gactacaacaatatggtttgataggtgatatcacacttcttctctcccagCAGTCTATCCTCTCACAGAAA---GTGGAGGTGATGACTAAGTACAATGATGCCCAGGTAGATTTTCGAGAACGGCAGCAAAGGCCCATCCAACATCAACTTGAAATTagtaaggtttgagtaccagtggatattgtgccatgtagctggccaccctta Alignment from Spaln_aa2Genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA gactacaacaatatggtttgataggtgatatcacacttcttctctcccagCAGTCTATCCTCTCACAGAAA---GTGGAGGTGATGACTAAGTACAATGATGCCCAGGTAGATTTTCGAGAACGGCAGCAAAGGCCCATCCAACATCAACTTGAAATTAgtaaggtttgagtaccagtggatattgtgccatgtagctggccaccctta Alignment from Spaln_nt2Genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA gactacaacaatatggtttgataggtgatatcacacttcttctctcccagCAGTCTATCCTCTCACAGAA---AGTGGAGGTGATGACTAAGTACAATGATGCCCAGGTAGATTTTCGAGAACGGCAGCAAAGGCCCATCCAACATCAACTTGAAATTAgtaaggtttgagtaccagtggatattgtgccatgtagctggccaccctta Alignment from Pairagon CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAAC-GCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA gactacaacaatatggtttgataggtgatatcacacttcttctctcccagCAGTCTATCCTCTCACAGAAA---GTGGAGGTGATGACTAAGTACAATGATGCCCAGGTAGATTTTCGAGAACGGCAGCAAA-GGCCCATCCAACATCAACTTGAAATTAgtaaggtttgagtaccagtggatattgtgccatgtagctggccaccctta Alignment from Exonerate_protein2genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA gactacaacaatatggtttgataggtgatatcacacttcttctctcccagCAGTCTATCCTCTCACAGAAA---GTGGAGGTGATGACTAAGTACAATGATGCCCAGGTAGATTTTCGAGAACGGCAGCAAAGGCCCATCCAACATCAACTTGAAATTAgtaaggtttgagtaccagtggatattgtgccatgtagctggccaccctta Alignment from Exonerate_coding2genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA gactacaacaatatggtttgataggtgatatcacacttcttctctcccagCAGTCTATCCTCTCACAGAAA---GTGGAGGTGATGACTAAGTACAATGATGCCCAGGTAGATTTTCGAGAACGGCAGCAAAGGCCCATCCAACATCAACTTGAAATTAgtaaggtttgagtaccagtggatattgtgccatgtagctggccaccctta Alignment from GeneWise CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA gactacaacaatatggtttgataggtgatatcacacttcttctctcccagCAGTCTATCCTCTCACAGAAA---GTGGAGGTGATGACTAAGTACAATGATGCCCAGGTAGATTTTCGAGAACGGCAGCAAAGGCCCATCCAACATCAACTTGAAATTAgtaaggtttgagtaccagtggatattgtgccatgtagctggccaccctta #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCA-GCCCGACAGTGCAGTGAATTTACCCTCATGGCCag ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAA---CCTCTTCATGCACGCCCGTC-GTGCAGTGAACTTACCCTTATGGCTaggtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCACGCCCGTCGTGCAGTGAACTTACCCTTATGGCTaggtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCACGCCCGTCGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCA-GCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAAC---CTCTTCATGCACGCCCGTC-GTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAAC---CTCTTCATGCACGCCCGTCGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCACGCCCGTCGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCACGCCCGTCGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCACGCCCGTCGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca #### Stx5a_ID2331_3 --> 1 - 1 Original Alignment gCGCATTGGGAAAGATCTCAGCAAT-ACATTTGCCAAGCTGGAGAAGCTAACAATCt catggcatcacctcactttctcacacaccttacttatgcctttggatcaggCGCATAGGGAAAGATCTGAGTAATCACATTTG-CAAACTTGAGAAATTAACAATCtgtaaagatttcctaggctacccaggcaaccagggtctggagtggacctcc Alignment from CESAR gCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt catggcatcacctcactttctcacacaccttacttatgcctttggatcaggCGCATAGGGAAAGATCTGAGTAATCACATTTGCAAACTTGAGAAATTAACAATCtgtaaagatttcctaggctacccaggcaaccagggtctggagtggacctcc Alignment from Spaln_aa2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggcatcacctcactttctcacacaccttacttatgcctttggatcagGCGCATAGGGAAAGATCTGAGTAATCACATTTGCAAACTTGAGAAATTAACAATCTgtaaagatttcctaggctacccaggcaaccagggtctggagtggacctcc Alignment from Spaln_nt2Genome GCGCATTGGGAAAGATCTCAGCAAT-ACATTTGCCAAGCTGGAGAAGCTAACAATCT catggcatcacctcactttctcacacaccttacttatgcctttggatcagGCGCATAGGGAAAGATCTGAGTAATCACATTTG-CAAACTTGAGAAATTAACAATCTgtaaagatttcctaggctacccaggcaaccagggtctggagtggacctcc Alignment from Pairagon GCGCATTGGGAAAGATCTCAGCAAT-ACATTTGCCAAGCTGGAGAAGCTAACAATCT catggcatcacctcactttctcacacaccttacttatgcctttggatcagGCGCATAGGGAAAGATCTGAGTAATCACATTTG-CAAACTTGAGAAATTAACAATCTgtaaagatttcctaggctacccaggcaaccagggtctggagtggacctcc Alignment from Exonerate_protein2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggcatcacctcactttctcacacaccttacttatgcctttggatcagGCGCATAGGGAAAGATCTGAGTAATCACATTTGCAAACTTGAGAAATTAACAATCTgtaaagatttcctaggctacccaggcaaccagggtctggagtggacctcc Alignment from Exonerate_coding2genome catggcatcacctcactttctcacacaccttacttatgcctttggatcaggcgcatagggaaagatctgagtaatcacatttgcaaacttgagaaattaacaatctgtaaagatttcctaggctacccaggcaaccagggtctggagtggacctcc Alignment from GeneWise GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggcatcacctcactttctcacacaccttacttatgcctttggatcagGCGCATAGGGAAAGATCTGAGTAATCACATTTGCAAACTTGAGAAATTAACAATCTgtaaagatttcctaggctacccaggcaaccagggtctggagtggacctcc #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCA-GTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAATCGA---GCCCAGCTATCCAGGGCCCCACGTGT-TGCCTTTCCATTAGCACCCAACAACCTTggtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAATCGA---GCCCAGCTATCCAGGGCCCCACGTGTTGCCTTTCCATTAGCACCCAACAACCTTggtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAAT---CGAGCCCAGCTATCCAGGGCCCCACGTGTTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCA-GTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAA---TCGAGCCCAGCTATCCAGGGCCCCACGTGT-TGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCC------------CCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAA---TCGAGCCCAGCTATCCAGGGCCCCA------------CGTGTTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAAT---CGAGCCCAGCTATCCAGGGCCCCACGTGTTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAAT---CGAGCCCAGCTATCCAGGGCCCCACGTGTTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAATCGAGCC---CAGCTATCCAGGGCCCCACGTGTTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTG-GGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaacgtaaagtttttttccctttgcagGTCCTGTACATACAGGCCTTTGTTCTTGTCTTCCTCTTGCGGGA-GGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagaaaggtccagcagttagggcaaggcttcttaattgcaatgctggc Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaacgtaaagtttttttccctttgcagGTCCTGTACATACAGGCCTTTGTTCTTGTCTTCCTCTTGCGGGAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagaaaggtccagcagttagggcaaggcttcttaattgcaatgctggc Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaacgtaaagtttttttccctttgcagGTCCTGTACATACAGGCCTTTGTTCTTGTCTTCCTCTTGCGGGAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagaaaggtccagcagttagggcaaggcttcttaattgcaatgctggc Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaacgtaaagtttttttccctttgcagGTCCTGTACATACAGGCCTTTGTTCTTGTCTTCCTCTTGCGGGAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagaaaggtccagcagttagggcaaggcttcttaattgcaatgctggc Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaacgtaaagtttttttccctttgcagGTCCTGTACATACAGGCCTTTGTTCTTGTCTTCCTCTTGCGGGAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagaaaggtccagcagttagggcaaggcttcttaattgcaatgctggc Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaacgtaaagtttttttccctttgcagGTCCTGTACATACAGGCCTTTGTTCTTGTCTTCCTCTTGCGGGAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagaaaggtccagcagttagggcaaggcttcttaattgcaatgctggc Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaacgtaaagtttttttccctttgcagGTCCTGTACATACAGGCCTTTGTTCTTGTCTTCCTCTTGCGGGAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagaaaggtccagcagttagggcaaggcttcttaattgcaatgctggc Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaacgtaaagtttttttccctttgcagGTCCTGTACATACAGGCCTTTGTTCTTGTCTTCCTCTTGCGGGAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtaagaaaggtccagcagttagggcaaggcttcttaattgcaatgctggc #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATC-TCCTGGCTCTTCCACTGCCGCATCGTCt atctcctgatgaatatgcaggtgtctctaactgtgtccctctctgtctagATGGAGCGTAGTCCCAACATTCCCCTGGC-CTTCCATTGCAGGATTGTCtgtaagggtagcttcataaaccagaggcattttgtttatgggagatcagcc Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt atctcctgatgaatatgcaggtgtctctaactgtgtccctctctgtctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGCAGGATTGTCtgtaagggtagcttcataaaccagaggcattttgtttatgggagatcagcc Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaatatgcaggtgtctctaactgtgtccctctctgtctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGCAGGATTGTCTgtaagggtagcttcataaaccagaggcattttgtttatgggagatcagcc Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACAT-CTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaatatgcaggtgtctctaactgtgtccctctctgtctagATGGAGCGTAGTCCCAACATTCCCCTGGC-CTTCCATTGCAGGATTGTCTgtaagggtagcttcataaaccagaggcattttgtttatgggagatcagcc Alignment from Pairagon ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaatatgcaggtgtctctaactgtgtccctctctgtctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGCAGGATTGTCTgtaagggtagcttcataaaccagaggcattttgtttatgggagatcagcc Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaatatgcaggtgtctctaactgtgtccctctctgtctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGCAGGATTGTCTgtaagggtagcttcataaaccagaggcattttgtttatgggagatcagcc Alignment from Exonerate_coding2genome GCCCCAACATCTCCTGGCTCTTCCACTGCCGC ATCTCCTGATGAATATGCAGGTGTCTCTAACTgtgtccctctctgtctagatggagcgtagtcccaacattcccctggccttccattgcaggattgtctgtaagggtagcttcataaaccagaggcattttgtttatgggagatcagcc Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaatatgcaggtgtctctaactgtgtccctctctgtctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGCAGGATTGTCTgtaagggtagcttcataaaccagaggcattttgtttatgggagatcagcc #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTG-GGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaaacataggtcaatagaagccttgatacttctctactgtgttgcagctCTCATGTTTCTCCTGCGGCATCC-TGACTTCCTCTTTGTCAGCCATGCTTATCACAGGGTCCTGACTCGTGGCGCTTCAGTGCAGTTGGTATTTGGCTTTGTAgtatgcccaagcgatgaggtaacaacccagctgttctttttgcccctcta Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaaacataggtcaatagaagccttgatacttctctactgtgttgcagctCTCATGTTTCTCCTGCGGCATCCTGACTTCCTCTTTGTCAGCCATGCTTATCACAGGGTCCTGACTCGTGGCGCTTCAGTGCAGTTGGTATTTGGCTTTGTAgtatgcccaagcgatgaggtaacaacccagctgttctttttgcccctcta Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaaacataggtcaatagaagccttgatacttctctactgtgttgcagCTCTCATGTTTCTCCTGCGGCATCCTGACTTCCTCTTTGTCAGCCATGCTTATCACAGGGTCCTGACTCGTGGCGCTTCAGTGCAGTTGGTATTTGGCTTTGTAgtatgcccaagcgatgaggtaacaacccagctgttctttttgcccctcta Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaaacataggtcaatagaagccttgatacttctctactgtgttgcagCTCTCATGTTTCTCCTGCGGCATCCTGACTTCCTCTTTGTCAGCCATGCTTATCACAGGGTCCTGACTCGTGGCGCTTCAGTGCAGTTGGTATTTGGCTTTGTAgtatgcccaagcgatgaggtaacaacccagctgttctttttgcccctcta Alignment from Pairagon CTCTCATGTTTCTCCTG-GGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaaacataggtcaatagaagccttgatacttctctactgtgttgcagCTCTCATGTTTCTCCTGCGGCATCCT-GACTTCCTCTTTGTCAGCCATGCTTATCACAGGGTCCTGACTCGTGGCGCTTCAGTGCAGTTGGTATTTGGCTTTGTAgtatgcccaagcgatgaggtaacaacccagctgttctttttgcccctcta Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaaacataggtcaatagaagccttgatacttctctactgtgttgcagCTCTCATGTTTCTCCTGCGGCATCCTGACTTCCTCTTTGTCAGCCATGCTTATCACAGGGTCCTGACTCGTGGCGCTTCAGTGCAGTTGGTATTTGGCTTTGTAgtatgcccaagcgatgaggtaacaacccagctgttctttttgcccctcta Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaaacataggtcaatagaagccttgatacttctctactgtgttgcagCTCTCATGTTTCTCCTGCGGCATCCTGACTTCCTCTTTGTCAGCCATGCTTATCACAGGGTCCTGACTCGTGGCGCTTCAGTGCAGTTGGTATTTGGCTTTGTAgtatgcccaagcgatgaggtaacaacccagctgttctttttgcccctcta Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaaacataggtcaatagaagccttgatacttctctactgtgttgcagCTCTCATGTTTCTCCTGCGGCATCCTGACTTCCTCTTTGTCAGCCATGCTTATCACAGGGTCCTGACTCGTGGCGCTTCAGTGCAGTTGGTATTTGGCTTTGTAgtatgcccaagcgatgaggtaacaacccagctgttctttttgcccctcta #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATG-ACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatcttccaaccttgcacttggggaaatgccacctctgttttctaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGCACCATCA-GATCAAGGTGCACACTTTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtcagttaggcctcacatttgttagtttgtcactttgatttttgtcttcc Alignment from CESAR gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatcttccaaccttgcacttggggaaatgccacctctgttttctaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGCACCATCAGATCAAGGTGCACACTTTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtcagttaggcctcacatttgttagtttgtcactttgatttttgtcttcc Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatcttccaaccttgcacttggggaaatgccacctctgttttctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGCACCATCAGATCAAGGTGCACACTTTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtcagttaggcctcacatttgttagtttgtcactttgatttttgtcttcc Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatcttccaaccttgcacttggggaaatgccacctctgttttctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGCACCATCAGATCAAGGTGCACACTTTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtcagttaggcctcacatttgttagtttgtcactttgatttttgtcttcc Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATG-ACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatcttccaaccttgcacttggggaaatgccacctctgttttctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGCACCATCA-GATCAAGGTGCACACTTTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtcagttaggcctcacatttgttagtttgtcactttgatttttgtcttcc Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatcttccaaccttgcacttggggaaatgccacctctgttttctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGCACCATCAGATCAAGGTGCACACTTTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtcagttaggcctcacatttgttagtttgtcactttgatttttgtcttcc Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatcttccaaccttgcacttggggaaatgccacctctgttttctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGCACCATCAGATCAAGGTGCACACTTTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtcagttaggcctcacatttgttagtttgtcactttgatttttgtcttcc Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatcttccaaccttgcacttggggaaatgccacctctgttttctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGCACCATCAGATCAAGGTGCACACTTTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtcagttaggcctcacatttgttagtttgtcactttgatttttgtcttcc #### Syvn1_ID1391_10 --> 1 - 1 Original Alignment cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGC-CCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggatagtctaacaataacctactgacctgttttctatttacttcatagcTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCCTGACATGTC-TATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCGCCTCAGCCCCAACCACTCCTGCCA---CCGCCGAATagtgagtgatgtctcatagtatagggccaatggacaagaaacttttggcta Alignment from CESAR cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggatagtctaacaataacctactgacctgttttctatttacttcatagcTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCCTGACATGTCTATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCGCCTCAGCCCCAACCACTCCTGCCA---CCGCCGAATagtgagtgatgtctcatagtatagggccaatggacaagaaacttttggcta Alignment from Spaln_aa2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggatagtctaacaataacctactgacctgttttctatttacttcatagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCCTGACATGTCTATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCGCCTCAGCCCCAACCACTCCTGCCA---CCGCCGAATAgtgagtgatgtctcatagtatagggccaatggacaagaaacttttggcta Alignment from Spaln_nt2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTA ggggatagtctaacaataacctactgacctgttttctatttacttcatagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCCTGACATGTCTATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCGCCTCAGCCCCAACCACTCCTGCCACCGCCGAATAgtgagtgatgtctcatagtatagggccaatggacaagaaacttttggcta Alignment from Pairagon CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTG-CCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggatagtctaacaataacctactgacctgttttctatttacttcatagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCCTGACATGTC-TATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCGCCTCAGCCCCAACCACTCCTGCCACCGCCG---AATAgtgagtgatgtctcatagtatagggccaatggacaagaaacttttggcta Alignment from Exonerate_protein2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggatagtctaacaataacctactgacctgttttctatttacttcatagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCCTGACATGTCTATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCGCCTCAGCCCCAACCACTCCTGCCA---CCGCCGAATAgtgagtgatgtctcatagtatagggccaatggacaagaaacttttggcta Alignment from Exonerate_coding2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggatagtctaacaataacctactgacctgttttctatttacttcatagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCCTGACATGTCTATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCGCCTCAGCCCCAACCACTCCTGCCA---CCGCCGAATAgtgagtgatgtctcatagtatagggccaatggacaagaaacttttggcta Alignment from GeneWise CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggatagtctaacaataacctactgacctgttttctatttacttcatagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCCTGACATGTCTATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCGCCTCAGCCCCAACCACTCCTGCCA---CCGCCGAATAgtgagtgatgtctcatagtatagggccaatggacaagaaacttttggcta #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCA-GGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggttgtactgacagctgtgccttgtcctctgctttcttgttcctccgtagtcCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGTTCCTGCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCGAGCTCTCGGAAAGG-TGCTGCTGCTCCACCCACAAGTACCggtatgtgtgtgtaagccagagtgattttgagagcactggacaggcacgga Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggttgtactgacagctgtgccttgtcctctgctttcttgttcctccgtagtcCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGTTCCTGCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCGAGCTCTCGGAAAGGTGCTGCTGCTCCACCCACAAGTACCggtatgtgtgtgtaagccagagtgattttgagagcactggacaggcacgga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggttgtactgacagctgtgccttgtcctctgctttcttgttcctccgtagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGTTCCTGCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCGAGCTCTCGGAAAGGTGCTGCTGCTCCACCCACAAGTACCGgtatgtgtgtgtaagccagagtgattttgagagcactggacaggcacgga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggttgtactgacagctgtgccttgtcctctgctttcttgttcctccgtagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGTTCCTGCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCGAGCTCTCGGAAAGGTGCTGCTGCTCCACCCACAAGTACCGgtatgtgtgtgtaagccagagtgattttgagagcactggacaggcacgga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggttgtactgacagctgtgccttgtcctctgctttcttgttcctccgtagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGTTCCTGCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCGAGCTCTCGGAAAGGTGCTGCTGCTCCACCCACAAGTACCGgtatgtgtgtgtaagccagagtgattttgagagcactggacaggcacgga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggttgtactgacagctgtgccttgtcctctgctttcttgttcctccgtagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGTTCCTGCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCGAGCTCTCGGAAAGGTGCTGCTGCTCCACCCACAAGTACCGgtatgtgtgtgtaagccagagtgattttgagagcactggacaggcacgga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggttgtactgacagctgtgccttgtcctctgctttcttgttcctccgtagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGTTCCTGCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCGAGCTCTCGGAAAGGTGCTGCTGCTCCACCCACAAGTACCGgtatgtgtgtgtaagccagagtgattttgagagcactggacaggcacgga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggttgtactgacagctgtgccttgtcctctgctttcttgttcctccgtagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGTTCCTGCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCGAGCTCTCGGAAAGGTGCTGCTGCTCCACCCACAAGTACCGgtatgtgtgtgtaagccagagtgattttgagagcactggacaggcacgga #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg ccaatactaaactggtagctaggcctgagtctttcctgcttcatttccagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGTGTCGCTCTAG-AGGTCATGAGCGGCAAGACCTGGAGGCCTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGgggtgagtatgcatgttcagctgcacacttccctgtagacagaccacctatt Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg ccaatactaaactggtagctaggcctgagtctttcctgcttcatttccagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGTGTCGCTCTAGAGGTCATGAGCGGCAAGACCTGGAGGCCTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGgggtgagtatgcatgttcagctgcacacttccctgtagacagaccacctatt Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG ccaatactaaactggtagctaggcctgagtctttcctgcttcatttccagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGTGTCGCTCTAGAGGTCATGAGCGGCAAGACCTGGAGGCCTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtgagtatgcatgttcagctgcacacttccctgtagacagaccacctatt Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG ccaatactaaactggtagctaggcctgagtctttcctgcttcatttccagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGTGTCGCTCTAGAGGTCATGAGCGGCAAGACCTGGAGGCCTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtgagtatgcatgttcagctgcacacttccctgtagacagaccacctatt Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCG-AGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG ccaatactaaactggtagctaggcctgagtctttcctgcttcatttccagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGTGTCGCTCTAGA-GGTCATGAGCGGCAAGACCTGGAGGCCTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtgagtatgcatgttcagctgcacacttccctgtagacagaccacctatt Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG ccaatactaaactggtagctaggcctgagtctttcctgcttcatttccagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGTGTCGCTCTAGAGGTCATGAGCGGCAAGACCTGGAGGCCTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtgagtatgcatgttcagctgcacacttccctgtagacagaccacctatt Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG ccaatactaaactggtagctaggcctgagtctttcctgcttcatttccagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGTGTCGCTCTAGAGGTCATGAGCGGCAAGACCTGGAGGCCTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtgagtatgcatgttcagctgcacacttccctgtagacagaccacctatt Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG ccaatactaaactggtagctaggcctgagtctttcctgcttcatttccagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGTGTCGCTCTAGAGGTCATGAGCGGCAAGACCTGGAGGCCTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtgagtatgcatgttcagctgcacacttccctgtagacagaccacctatt #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCT-GCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg gtgcaacaattccaggcaaaatgttggattcattttctttacctttccagaCCCCCAAGGCCAGCAACCTCCGATAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTCGCACCCT-CAGTAGCACTCCAAGCTCTGAGGCTCCAACTCCTTCACCAGGGGCATCCCCCCCAATTCTTGAAGCAGAAAAGCCTCCTggtatgtttcaaaaagaataggccagcagaatctaggtggtatggcttgag Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg gtgcaacaattccaggcaaaatgttggattcattttctttacctttccagaCCCCCAAGGCCAGCAACCTCCGATAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTCGCACCCTCAGTAGCACTCCAAGCTCTGAGGCTCCAACTCCTTCACCAGGGGCATCCCCCCCAATTCTTGAAGCAGAAAAGCCTCCTggtatgtttcaaaaagaataggccagcagaatctaggtggtatggcttgag Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcaacaattccaggcaaaatgttggattcattttctttacctttccagACCCCCAAGGCCAGCAACCTCCGATAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTCGCACCCTCAGTAGCACTCCAAGCTCTGAGGCTCCAACTCCTTCACCAGGGGCATCCCCCCCAATTCTTGAAGCAGAAAAGCCTCCTGgtatgtttcaaaaagaataggccagcagaatctaggtggtatggcttgag Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcaacaattccaggcaaaatgttggattcattttctttacctttccagACCCCCAAGGCCAGCAACCTCCGATAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTCGCACCCTCAGTAGCACTCCAAGCTCTGAGGCTCCAACTCCTTCACCAGGGGCATCCCCCCCAATTCTTGAAGCAGAAAAGCCTCCTGgtatgtttcaaaaagaataggccagcagaatctaggtggtatggcttgag Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcaacaattccaggcaaaatgttggattcattttctttacctttccagACCCCCAAGGCCAGCAACCTCCGATAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTCGCACCCTCAGTAGCACTCCAAGCTCTGAGGCTCCAACTCCTTCACCAGGGGCATCCCCCCCAATTCTTGAAGCAGAAAAGCCTCCTGgtatgtttcaaaaagaataggccagcagaatctaggtggtatggcttgag Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcaacaattccaggcaaaatgttggattcattttctttacctttccagACCCCCAAGGCCAGCAACCTCCGATAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTCGCACCCTCAGTAGCACTCCAAGCTCTGAGGCTCCAACTCCTTCACCAGGGGCATCCCCCCCAATTCTTGAAGCAGAAAAGCCTCCTGgtatgtttcaaaaagaataggccagcagaatctaggtggtatggcttgag Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcaacaattccaggcaaaatgttggattcattttctttacctttccagACCCCCAAGGCCAGCAACCTCCGATAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTCGCACCCTCAGTAGCACTCCAAGCTCTGAGGCTCCAACTCCTTCACCAGGGGCATCCCCCCCAATTCTTGAAGCAGAAAAGCCTCCTGgtatgtttcaaaaagaataggccagcagaatctaggtggtatggcttgag Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcaacaattccaggcaaaatgttggattcattttctttacctttccagACCCCCAAGGCCAGCAACCTCCGATAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTCGCACCCTCAGTAGCACTCCAAGCTCTGAGGCTCCAACTCCTTCACCAGGGGCATCCCCCCCAATTCTTGAAGCAGAAAAGCCTCCTGgtatgtttcaaaaagaataggccagcagaatctaggtggtatggcttgag #### Taf5_ID10097_5 --> 1 - 0 Original Alignment aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTG-GACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagaATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTACGACAAAATAA-GAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from CESAR aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagaATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTACGACAAAATAAGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Spaln_aa2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTACGACAAAATAAGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Spaln_nt2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTACGACAAAATAAGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Pairagon AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTG-GACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTACGACAAAATAA-GAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Exonerate_protein2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTACGACAAAATAAGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Exonerate_coding2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTACGACAAAATAAGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from GeneWise AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTACGACAAAATAAGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACA-GGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tattgcatgccaatacactacaaatccatggaaaaagaactttctttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACACGGAGCAA-AGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtaagccctgtagtgacctcataacagtgcccacgtgtgtctttctgtcc Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tattgcatgccaatacactacaaatccatggaaaaagaactttctttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACACGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtaagccctgtagtgacctcataacagtgcccaccgattctgtctgcttc Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tattgcatgccaatacactacaaatccatggaaaaagaactttctttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACACGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtaagccctgtagtgacctcataacagtgcccacgtgtgtctttctgtcc Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tattgcatgccaatacactacaaatccatggaaaaagaactttctttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACACGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtaagccctgtagtgacctcataacagtgcccacgtgtgtctttctgtcc Alignment from Pairagon GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACA-GGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tattgcatgccaatacactacaaatccatggaaaaagaactttctttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACACGGAGCAA-AGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtaagccctgtagtgacctcataacagtgcccacgtgtgtctttctgtcc Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tattgcatgccaatacactacaaatccatggaaaaagaactttctttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACACGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtaagccctgtagtgacctcataacagtgcccacgtgtgtctttctgtcc Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tattgcatgccaatacactacaaatccatggaaaaagaactttctttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACACGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtaagccctgtagtgacctcataacagtgcccacgtgtgtctttctgtcc Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tattgcatgccaatacactacaaatccatggaaaaagaactttctttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACACGGAGCAAAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtaagccctgtagtgacctcataacagtgcccacgtgtgtctttctgtcc #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACgg TATCAGgtagataggccaggaaatgccctaaaattctttcttctatatagGAACTGGCATCAGCCCCTGGGGACCCCCAGTGGATGGAAGCCACAGGCAGGGACTTACATCAACAATTTCCTTTGCACGAGCATGTTTG-CCTGCCTCAAGGACATgggtactagttgaggaaatagggtattcaaacaatgatgtccgtccgttgtc Alignment from CESAR TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtaggaaggccaggaaatgccctaaaattctttcttctatatagGAACTGGCATCAGCCCCTGGGGACCCCCAGTGGATGGAAGCCACAGGCAGGGACTTACATCAACAATTTCCTTTGCACGAGCATGTTTGCCTGCCTCAAGGACATgggtactagttgaggaaatagggtattcaaacaatgatgtccgtccgttgtc Alignment from Spaln_aa2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtagataggccaggaaatgccctaaaattctttcttctatatagGAACTGGCATCAGCCCCTGGGGACCCCCAGTGGATGGAAGCCACAGGCAGGGACTTACATCAACAATTTCCTTTGCACGAGCATGTTTGCCTGCCTCAAGGACATGGgtactagttgaggaaatagggtattcaaacaatgatgtccgtccgttgtc Alignment from Spaln_nt2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACGG TATCAGgtagataggccaggaaatgccctaaaattctttcttctatatagGAACTGGCATCAGCCCCTGGGGACCCCCAGTGGATGGAAGCCACAGGCAGGGACTTACATCAACAATTTCCTTTGCACGAGCATGTTTGCCT-GCCTCAAGGACATGGgtactagttgaggaaatagggtattcaaacaatgatgtccgtccgttgtc Alignment from Pairagon TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACGG TATCAGgtagataggccaggaaatgccctaaaattctttcttctatatagGAACTGGCATCAGCCCCTGGGGACCCCCAGTGGATGGAAGCCACAGGCAGGGACTTACATCAACAATTTCCTTTGCACGAGCATGTTTGCCT-GCCTCAAGGACATGGgtactagttgaggaaatagggtattcaaacaatgatgtccgtccgttgtc Alignment from Exonerate_protein2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtagataggccaggaaatgccctaaaattctttcttctatatagGAACTGGCATCAGCCCCTGGGGACCCCCAGTGGATGGAAGCCACAGGCAGGGACTTACATCAACAATTTCCTTTGCACGAGCATGTTTGCCTGCCTCAAGGACATGGgtactagttgaggaaatagggtattcaaacaatgatgtccgtccgttgtc Alignment from Exonerate_coding2genome tatcaggtagataggccaggaaatgccctaaaattctttcttctatataggaactggcatcagcccctggggacccccagtggatggaagccacaggcagggacttacatcaacaatttcctttgcacgagcatgtttgcctgcctcaaggacatgggtactagttgaggaaatagggtattcaaacaatgatgtccgtccgttgtc Alignment from GeneWise TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtagataggccaggaaatgccctaaaattctttcttctatatagGAACTGGCATCAGCCCCTGGGGACCCCCAGTGGATGGAAGCCACAGGCAGGGACTTACATCAACAATTTCCTTTGCACGAGCATGTTTGCCTGCCTCAAGGACATGGgtactagttgaggaaatagggtattcaaacaatgatgtccgtccgttgtc #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg aatgtcacaggtctacaatgctcttaggaccctagcttcttgcactttagagCTGTCAGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTCGTCGCAA-TCTGTTGGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTGCATtggtgagggtgatatctatatgacaggatgtgacagggaccataggttgatt Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg aatgtcacaggtctacaatgctcttaggaccctagcttcttgcactttagagCTGTCAGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTCGTCGCAATCTGTTGGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTGCATtggtgagggtgatatctatatgacaggatgtgacagggaccataggttgatt Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG aatgtcacaggtctacaatgctcttaggaccctagcttcttgcactttagAGCTGTCAGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTCGTCGCAATCTGTTGGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgagggtgatatctatatgacaggatgtgacagggaccataggttgatt Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG aatgtcacaggtctacaatgctcttaggaccctagcttcttgcactttagAGCTGTCAGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTCGTCGCAAT-CTGTTGGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgagggtgatatctatatgacaggatgtgacagggaccataggttgatt Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG aatgtcacaggtctacaatgctcttaggaccctagcttcttgcactttagAGCTGTCAGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTCGTCGCAAT-CTGTTGGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgagggtgatatctatatgacaggatgtgacagggaccataggttgatt Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG aatgtcacaggtctacaatgctcttaggaccctagcttcttgcactttagAGCTGTCAGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTCGTCGCAATCTGTTGGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgagggtgatatctatatgacaggatgtgacagggaccataggttgatt Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGG aatgtcacaggtctacaatgctcttaggaccctagcttcttgcactttagAGCTGTCAGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTCGTCGCAATCTGTTGGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTGCATTGGtgagggtgatatctatatgacaggatgtgacagggaccataggttgatt Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG aatgtcacaggtctacaatgctcttaggaccctagcttcttgcactttagAGCTGTCAGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTCGTCGCAATCTGTTGGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgagggtgatatctatatgacaggatgtgacagggaccataggttgatt #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTC-TGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gtggacagatgttcaacttgtgagcttcccctttcttcttctgcccttagTTTGTCCCCTCTGAGATCTTCATGCACCGAGCAATCCACATCATTGAGTTCCTGTCTTGGTT-CATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCAcgtaactgatgtacattgtgtaacgacataagaaattcccaatgggtagca Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gtggacagatgttcaacttgtgagcttcccctttcttcttctgcccttagTTTGTCCCCTCTGAGATCTTCATGCACCGAGCAATCCACATCATTGAGTTCCTGTCTTGGTTCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCAcgtaactgatgtacattgtgtaacgacataagaaattcccaatgggtagca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgtgagcttcccctttcttcttctgcccttagTTTGTCCCCTCTGAGATCTTCATGCACCGAGCAATCCACATCATTGAGTTCCTGTCTTGGTTCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgtaactgatgtacattgtgtaacgacataagaaattcccaatgggtagca Alignment from Spaln_nt2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgtgagcttcccctttcttcttctgcccttagTTTGTCCCCTCTGAGATCTTCATGCACCGAGCAATCCACATCATTGAGTTCCTGTCTTGGTTCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgtaactgatgtacattgtgtaacgacataagaaattcccaatgggtagca Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTG--------CATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgtgagcttcccctttcttcttctgcccttagTTTGTCCCCTCTGAGATCTTCATGCACCGAGCAATCCACATCATTGAGTTC--------CTGTCTTGGTTCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgtaactgatgtacattgtgtaacgacataagaaattcccaatgggtagca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgtgagcttcccctttcttcttctgcccttagTTTGTCCCCTCTGAGATCTTCATGCACCGAGCAATCCACATCATTGAGTTCCTGTCTTGGTTCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgtaactgatgtacattgtgtaacgacataagaaattcccaatgggtagca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgtgagcttcccctttcttcttctgcccttagTTTGTCCCCTCTGAGATCTTCATGCACCGAGCAATCCACATCATTGAGTTCCTGTCTTGGTTCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgtaactgatgtacattgtgtaacgacataagaaattcccaatgggtagca Alignment from GeneWise TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgtgagcttcccctttcttcttctgcccttagTTTGTCCCCTCTGAGATCTTCATGCACCGAGCAATCCACATCATTGAGTTCCTGTCTTGGTTCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgtaactgatgtacattgtgtaacgacataagaaattcccaatgggtagca #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAG-AACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGCAATA-TTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGCAATATTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGCAATATTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGCAATATTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGCAATATTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGCAATATTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGCAATATTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGCAATATTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCAC-CGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agacaatgtaattccaattcaacacacttctccctctcttttgctttcagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCGTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCC------CTCCTACATGAGCACCCAGCACA-AAGAAACTCCCAAACACGA---GCAGGCCAACAAgtgagcacatagtgttggggtcaagtgctgacacatgtaacttcttcttc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agacaatgtaattccaattcaacacacttctccctctcttttgctttcagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCGTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCC------CTCCTACATGAGCACCCAGCACAAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtgagcacatagtgttggggtcaagtgctgacacatgtaacttcttcttc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agacaatgtaattccaattcaacacacttctccctctcttttgctttcagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCGTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCC------CTCCTACATGAGCACCCAGCACAAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtgagcacatagtgttggggtcaagtgctgacacatgtaacttcttcttc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGC-CACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agacaatgtaattccaattcaacacacttctccctctcttttgctttcagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCGTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACC------CCTCCTACATGAGCACCCAGCACA-AAGAAACTCCCA---AACACGAGCAGGCCAACAAgtgagcacatagtgttggggtcaagtgctgacacatgtaacttcttcttc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCC-------------------------------------AGCAGGCCAGCAG agacaatgtaattccaattcaacacacttctccctctcttttgctttcagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCGTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCCCT----------------------------------------------CCTACATGAGCACCCAGCACAAAGAAACTCCCAAACACGAGCAGGCCAACAAgtgagcacatagtgttggggtcaagtgctgacacatgtaacttcttcttc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agacaatgtaattccaattcaacacacttctccctctcttttgctttcagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCGTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCC------CTCCTACATGAGCACCCAGCACAAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtgagcacatagtgttggggtcaagtgctgacacatgtaacttcttcttc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agacaatgtaattccaattcaacacacttctccctctcttttgctttcagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCGTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCC------CTCCTACATGAGCACCCAGCACAAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtgagcacatagtgttggggtcaagtgctgacacatgtaacttcttcttc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agacaatgtaattccaattcaacacacttctccctctcttttgctttcagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCGTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCCCTC------CTACATGAGCACCCAGCACAAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtgagcacatagtgttggggtcaagtgctgacacatgtaacttcttcttc #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTC-ATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcaggCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCCATCTTCCTCC-GGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcaggCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCCATCTTCCTCCGGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCCATCTTCCTCCGGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTC-ATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCCATCTTCCT-CCGGGCCT------CTATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCT-CATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCCATCTTCCT-CCGGGCCT------CTATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCCATCTTCCTCCGGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Exonerate_coding2genome agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcaggcactttggtgaggcccacaggctgctgcttgggacgttgtcagagctccatcttcctccgggcctctatctggtgctcctgattctctacaaatgggtaaacatctcagcaactagttctgcctcagcccccattattcacttcatcaatttcctcttctcccagaaccccaatcatctgctgttccatgggcaggtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCCATCTTCCTCCGGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACG-AACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt accaccaaagtgcatgttgcaaagtgttcacctttccatctgtctcctagCTCTGCAGTCTGGCCACACAACCACC-GAGCTTTCTCAACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGgtgtgagttatctgatttaggcatgggtagtatgtgccgagtcttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt accaccaaagtgcatgttgcaaagtgttcacctttccatctgtctcctagCTCTGCAGTCTGGCCACACAACCACCGAGCTTTCTCAACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGgtgtgagttatctgatttaggcatgggtagtatgtgccgagtcttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaccaaagtgcatgttgcaaagtgttcacctttccatctgtctcctagCTCTGCAGTCTGGCCACACAACCACCGAGCTTTCTCAACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtgagttatctgatttaggcatgggtagtatgtgccgagtcttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACG-AACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaccaaagtgcatgttgcaaagtgttcacctttccatctgtctcctagCTCTGCAGTCTGGCCACACAACCACC-GAGCTTTCTCAACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtgagttatctgatttaggcatgggtagtatgtgccgagtcttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaccaaagtgcatgttgcaaagtgttcacctttccatctgtctcctagCTCTGCAGTCTGGCCACACAACCACCGAGCTTTCTCAACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtgagttatctgatttaggcatgggtagtatgtgccgagtcttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaccaaagtgcatgttgcaaagtgttcacctttccatctgtctcctagCTCTGCAGTCTGGCCACACAACCACCGAGCTTTCTCAACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtgagttatctgatttaggcatgggtagtatgtgccgagtcttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaccaaagtgcatgttgcaaagtgttcacctttccatctgtctcctagCTCTGCAGTCTGGCCACACAACCACCGAGCTTTCTCAACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtgagttatctgatttaggcatgggtagtatgtgccgagtcttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaccaaagtgcatgttgcaaagtgttcacctttccatctgtctcctagCTCTGCAGTCTGGCCACACAACCACCGAGCTTTCTCAACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtgagttatctgatttaggcatgggtagtatgtgccgagtcttgcctcat #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCA-TATCCCTTTGGCATTGACCCG aagcagttctgataagaagtattggttaccccttgttctctctcaatcagtGAGGAGTATTTATCTTGGCATTCAATGCTCACCTTGAACCCTAACATAACTGGAGTCTTTCTTGGCCCACTACCCAT-TGGCATTGAGCCTgtaaatgtgcatacaagtgtaaggtaaatagatacatgagaaggcagtcc Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG aagcagttctgataagaagtattggttaccccttgttctctctcaatcagtGAGGAGTATTTATCTTGGCATTCAATGCTCACCTTGAACCCTAACATAACTGGAGTCTTTCTTGGCCCACTACCCATTGGCATTGAGCCTgtaaatgtgcatacaagtgtaaggtaaatagatacatgagaaggcagtcc Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG aagcagttctgataagaagtattggttaccccttgttctctctcaatcagTGAGGAGTATTTATCTTGGCATTCAATGCTCACCTTGAACCCTAACATAACTGGAGTCTTTCTTGGCCCACTACCCATTGGCATTGAGCCTgtaaatgtgcatacaagtgtaaggtaaatagatacatgagaaggcagtcc Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG aagcagttctgataagaagtattggttaccccttgttctctctcaatcagTGAGGAGTATTTATCTTGGCATTCAATGCTCACCTTGAACCCTAACATAACTGGAGTCTTTCTTGGCCCACTACCCATTGGCATTGAGCCTgtaaatgtgcatacaagtgtaaggtaaatagatacatgagaaggcagtcc Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG AAGCAGTTCTGATAAGAAGTATTGGTTACCCCTTGTTCTCTCTCAATCAGTGAGGAGTATTTATCTTGGCATTCAATGCTCACCTTGAACCCTAACATAACTGGAGTCTTTCTTGGCCCACTACCCATTGGCATTGAGCCTgtaaatgtgcatacaagtgtaaggtaaatagatacatgagaaggcagtcc Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG aagcagttctgataagaagtattggttaccccttgttctctctcaatcagTGAGGAGTATTTATCTTGGCATTCAATGCTCACCTTGAACCCTAACATAACTGGAGTCTTTCTTGGCCCACTACCCATTGGCATTGAGCCTgtaaatgtgcatacaagtgtaaggtaaatagatacatgagaaggcagtcc Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG aagcagttctgataagaagtattggttaccccttgttctctctcaatcagTGAGGAGTATTTATCTTGGCATTCAATGCTCACCTTGAACCCTAACATAACTGGAGTCTTTCTTGGCCCACTACCCATTGGCATTGAGCCTgtaaatgtgcatacaagtgtaaggtaaatagatacatgagaaggcagtcc Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG aagcagttctgataagaagtattggttaccccttgttctctctcaatcagTGAGGAGTATTTATCTTGGCATTCAATGCTCACCTTGAACCCTAACATAACTGGAGTCTTTCTTGGCCCACTACCCATTGGCATTGAGCCTgtaaatgtgcatacaagtgtaaggtaaatagatacatgagaaggcagtcc #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAA-ACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagccTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGCACAG-TCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagccTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGCACAGTCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Spaln_aa2Genome TTTACCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG tgtgttcgtggaatttcttctggtcgatgttgtttgtgtttcttta gCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGCACAGTCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGCACAGTCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGCACAGTCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGCACAGTCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGCACAGTCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGCACAGTCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAG-AGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa GCCTGTGGAGTTGAGAGATgtaggcagttactgagctgctctgcccacagTTCAATGAGTTGGTGAGTGCATTCCAGCAGAC-CTTTGTAGTAGATGTGCAGCACTGTGAGGAGCTGGACAAG---ATTagtaagatgtcctcagcgtatttgagatgacagggtgtactttatttaccc Alignment from CESAR CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa GCCTGTGGAGTTGAGAGATgtaagtagttactgagctgctctgcccacagTTCAATGAGTTGGTGAGTGCATTCCAGCAGACCTTTGTAGTAGATGTGCAGCACTGTGAGGAGCTGGACAAG---ATTagtaagatgtcctcagcgtatttgagatgacagggtgtactttatttaccc Alignment from Spaln_aa2Genome CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACG- GCCTGTGGAGTTGAGAGATgtaggcagttactgagctgctctgcccacagTTCAATGAGTTGGTGAGTGCATTCCAGCAGACCTTTGTAGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGATTAgtaagatgtcctcagcgtatttgagatgacagggtgtactttatttaccc Alignment from Spaln_nt2Genome CCTCGTGGAGTTCAGAGAC-------------------------------CTCAACGAATCCGTGAGCGCCTTCCAG-AGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA GCCTGTGGAGTTGAGAGATGTAGGCAGTTACTGAGCTGCTCTGCCCACAGTTCAATGAGTTGGTGAGTGCATTCCAGCAGAC-CTTTGTAGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGA---TTAgtaagatgtcctcagcgtatttgagatgacagggtgtactttatttaccc Alignment from Pairagon CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA GCCTGTGGAGTTGAGAGATgtaggcagttactgagctgctctgcccacagTTCAATGAGTTGGTGAGTGCATTCCAGCAGACCTTTGTAGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGA---TTAgtaagatgtcctcagcgtatttgagatgacagggtgtactttatttaccc Alignment from Exonerate_protein2genome CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA GCCTGTGGAGTTGAGAGATgtaggcagttactgagctgctctgcccacagTTCAATGAGTTGGTGAGTGCATTCCAGCAGACCTTTGTAGTAGATGTGCAGCACTGTGAGGAGCTGGACAAG---ATTAgtaagatgtcctcagcgtatttgagatgacagggtgtactttatttaccc Alignment from Exonerate_coding2genome CCTCGTGGAGTTCAGAGACCTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAG GCCTGTGGAGTTGAGAGATGTAGGCAGTTACTGAGCTGCTCTGCCCACAGTTCAATGAGTTGgtgagtgcattccagcagacctttgtagtagatgtgcagcactgtgaggagctggacaagattagtaagatgtcctcagcgtatttgagatgacagggtgtactttatttaccc Alignment from GeneWise CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA GCCTGTGGAGTTGAGAGATgtaggcagttactgagctgctctgcccacagTTCAATGAGTTGGTGAGTGCATTCCAGCAGACCTTTGTAGTAGATGTGCAGCACTGTGAGGAGCTGGACAAG---ATTAgtaagatgtcctcagcgtatttgagatgacagggtgtactttatttaccc #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCA-GTATCTGGGTGCCAGTTAag caacaacctcaccgatccctgactcacccttctgttctgtttctttccagATGACCCTGCTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAGTTTGGTGTGAATGCACTTCT-TGGGTGCCAATTGaggtaagtaatttgtatgagacgactctgagatgagactttataagtcggat Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag caacaacctcaccgatccctgactcacccttctgttctgtttctttccagATGACCCTGCTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAGTTTGGTGTGAATGCACTTCTTGGGTGCCAATTGaggtaagtaatttgtatgagacgactctgagatgagactttataagtcggat Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG caacaacctcaccgatccctgactcacccttctgttctgtttctttccagATGACCCTGCTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAGTTTGGTGTGAATGCACTTCTTGGGTGCCAATTGAGgtaagtaatttgtatgagacgactctgagatgagactttataagtcggat Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG caacaacctcaccgatccctgactcacccttctgttctgtttctttccagATGACCCTGCTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAGTTTGGTGTGAATGCACTTCTTGGGTGCCAATTGAGgtaagtaatttgtatgagacgactctgagatgagactttataagtcggat Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG caacaacctcaccgatccctgactcacccttctgttctgtttctttccagATGACCCTGCTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAGTTTGGTGTGAATGCACTTCTTGGGTGCCAATTGAGgtaagtaatttgtatgagacgactctgagatgagactttataagtcggat Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG caacaacctcaccgatccctgactcacccttctgttctgtttctttccagATGACCCTGCTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAGTTTGGTGTGAATGCACTTCTTGGGTGCCAATTGAGgtaagtaatttgtatgagacgactctgagatgagactttataagtcggat Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG caacaacctcaccgatccctgactcacccttctgttctgtttctttccagATGACCCTGCTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAGTTTGGTGTGAATGCACTTCTTGGGTGCCAATTGAGgtaagtaatttgtatgagacgactctgagatgagactttataagtcggat Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG caacaacctcaccgatccctgactcacccttctgttctgtttctttccagATGACCCTGCTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAGTTTGGTGTGAATGCACTTCTTGGGTGCCAATTGAGgtaagtaatttgtatgagacgactctgagatgagactttataagtcggat #### Tctn3_ID7992_9 --> 0 - 0 Original Alignment GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATC-CAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctctttgttaaggaggaaatgactttctgcctctagGTCGTCTATGAGATAGAGACCAATGGGACCTTTGGGATACCAGAAAGTCT-TGTCAGCTTCCGACAGACAAACCTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaagtctcctctctctgggatggaactaagctccagcacacaaaatcac Alignment from CESAR GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctctttgttaaggaggaaatgactttctgcctctagGTCGTCTATGAGATAGAGACCAATGGGACCTTTGGGATACCAGAAAGTCTTGTCAGCTTCCGACAGACAAACCTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaagtctcctctctctgggatggaactaagctccagcacacaaaatcac Alignment from Spaln_aa2Genome GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctctttgttaaggaggaaatgactttctgcctctagGTCGTCTATGAGATAGAGACCAATGGGACCTTTGGGATACCAGAAAGTCTTGTCAGCTTCCGACAGACAAACCTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaagtctcctctctctgggatggaactaagctccagcacacaaaatcac Alignment from Spaln_nt2Genome GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctctttgttaaggaggaaatgactttctgcctctagGTCGTCTATGAGATAGAGACCAATGGGACCTTTGGGATACCAGAAAGTCTTGTCAGCTTCCGACAGACAAACCTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaagtctcctctctctgggatggaactaagctccagcacacaaaatcac Alignment from Pairagon GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGAT-CCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctctttgttaaggaggaaatgactttctgcctctagGTCGTCTATGAGATAGAGACCAATGGGACCTTTGGGATACCAGAAAGTCT-TGTCAGCTTCCGACAGACAAACCTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaagtctcctctctctgggatggaactaagctccagcacacaaaatcac Alignment from Exonerate_protein2genome GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctctttgttaaggaggaaatgactttctgcctctagGTCGTCTATGAGATAGAGACCAATGGGACCTTTGGGATACCAGAAAGTCTTGTCAGCTTCCGACAGACAAACCTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaagtctcctctctctgggatggaactaagctccagcacacaaaatcac Alignment from Exonerate_coding2genome GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctctttgttaaggaggaaatgactttctgcctctagGTCGTCTATGAGATAGAGACCAATGGGACCTTTGGGATACCAGAAAGTCTTGTCAGCTTCCGACAGACAAACCTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaagtctcctctctctgggatggaactaagctccagcacacaaaatcac Alignment from GeneWise GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctctttgttaaggaggaaatgactttctgcctctagGTCGTCTATGAGATAGAGACCAATGGGACCTTTGGGATACCAGAAAGTCTTGTCAGCTTCCGACAGACAAACCTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaagtctcctctctctgggatggaactaagctccagcacacaaaatcac #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment GTGCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTAC-TATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAggtaaggttgtttggtttctatttctttaggaTTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTAAAGGACCTATCCAGTAGCTGTAGCTCTGAGCCAGCTCTGGATGCAGTTTCAGACCTACA-CTTTAGAGTCTTGAGGgtaggacatagccaggtttctgctgcttctgatttctcaatgctaggtgc Alignment from CESAR GTGCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAggtaatgttgtttggtttctatttctttaggaTTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTAAAGGACCTATCCAGTAGCTGTAGCTCTGAGCCAGCTCTGGATGCAGTTTCAGACCTACACTTTAGAGTCTTGAGGgtaggacatagccaggtttctgctgcttctgatttctcaatgctaggtgc Alignment from Spaln_aa2Genome GTGCCGAGAGCAACCCTGCA-----------------------------GGTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGGTAAGGTTGTTTGGTTTCTATTTCTTtaGGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTAAAGGACCTATCCAGTAGCTGTAGCTCTGAGCCAGCTCTGGATGCAGTTTCAGACCTACACTTTAGAGTCTTGAGGgtaggacatagccaggtttctgctgcttctgatttctcaatgctaggtgc Alignment from Spaln_nt2Genome GTGCCGAGAGCAACCCTGCAGGT-----------------------------TTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGGTAAGGTTGTTTGGTTTCTATTTCTTTAGGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTAAAGGACCTATCCAGTAGCTGTAGCTCTGAGCCAGCTCTGGATGCAGTTTCAGACCTACACTTTAGAGTCTTGAGGgtaggacatagccaggtttctgctgcttctgatttctcaatgctaggtgc Alignment from Pairagon GTGCCGAGAGCAACCCTGCAGGT-----------------------------TTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGGTAAGGTTGTTTGGTTTCTATTTCTTTAGGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTAAAGGACCTATCCAGTAGCTGTAGCTCTGAGCCAGCTCTGGATGCAGTTTCAGACCTACACTTTAGAGTCTTGAGGgtaggacatagccaggtttctgctgcttctgatttctcaatgctaggtgc Alignment from Exonerate_protein2genome CCGAGAGCAACCCTGCAGGTT TCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG CAGAGAGCAACCCAGCA---GgtaaggttgtttggtttctatttctttaggatTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTAAAGGACCTATCCAGTAGCTGTAGCTCTGAGCCAGCTCTGGATGCAGTTTCAGACCTACACTTTAGAGTCTTGAGGgtaggacatagccaggtttctgctgcttctgatttctcaatgctaggtgc Alignment from Exonerate_coding2genome CCGAGAGCAACCCTGCAGGTT TCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG CAGAGAGCAACCCAGCA---GgtaaggttgtttggtttctatttctttaggatTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTAAAGGACCTATCCAGTAGCTGTAGCTCTGAGCCAGCTCTGGATGCAGTTTCAGACCTACACTTTAGAGTCTTGAGGgtaggacatagccaggtttctgctgcttctgatttctcaatgctaggtgc Alignment from GeneWise GTGCCGAGAGCAACCCTGCAG GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGgtaaggttgtttggtttctatttctttagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTAAAGGACCTATCCAGTAGCTGTAGCTCTGAGCCAGCTCTGGATGCAGTTTCAGACCTACACTTTAGAGTCTTGAGGgtaggacatagccaggtttctgctgcttctgatttctcaatgctaggtgc #### Tctn3_ID7999_2 --> 2 - 2 Original Alignment ctTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTA-AACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggcagatttcagatgaaaatggccactcttacccccccctccccccagctTTACCAATATGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTACAACTGTT-TTGCGACAAGGATTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCGTGGTAGTGTAaggtaagctgtagcacacgtccagttgtggggtgaaagttctgtgccctgca Alignment from CESAR ctTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggcagatttcagatgaaaatggccactcttacccccccctccccccagctTTACCAATATGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTACAACTGTTTTGCGACAAGGATTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCGTGGTAGTGTAaggtaagctgtagcacacgtccagttgtggggtgaaagttctgtgccctgca Alignment from Spaln_aa2Genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggcagatttcagatgaaaatggccactcttacccccccctccccccagCTTTACCAATATGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTACAACTGTTTTGCGACAAGGATTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCGTGGTAGTGTAAGgtaagctgtagcacacgtccagttgtggggtgaaagttctgtgccctgca Alignment from Spaln_nt2Genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggcagatttcagatgaaaatggccactcttacccccccctccccccagCTTTACCAATATGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTACAACTGTTTTGCGACAAGGATTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCGTGGTAGTGTAAGgtaagctgtagcacacgtccagttgtggggtgaaagttctgtgccctgca Alignment from Pairagon CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTA-AACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggcagatttcagatgaaaatggccactcttacccccccctccccccagCTTTACCAATATGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTACAACTGTT-TTGCGACAAGGATTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCGTGGTAGTGTAAGgtaagctgtagcacacgtccagttgtggggtgaaagttctgtgccctgca Alignment from Exonerate_protein2genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggcagatttcagatgaaaatggccactcttacccccccctccccccagCTTTACCAATATGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTACAACTGTTTTGCGACAAGGATTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCGTGGTAGTGTAAGgtaagctgtagcacacgtccagttgtggggtgaaagttctgtgccctgca Alignment from Exonerate_coding2genome CCAGCTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggcagatttcagatgaaaatggccactcttacccccccctccccCCAGCTTTACCAATATGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTACAACTGTTTTGCGACAAGGATTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCGTGGTAGTGTAAGgtaagctgtagcacacgtccagttgtggggtgaaagttctgtgccctgca Alignment from GeneWise CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggcagatttcagatgaaaatggccactcttacccccccctccccccagCTTTACCAATATGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTACAACTGTTTTGCGACAAGGATTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCGTGGTAGTGTAAGgtaagctgtagcacacgtccagttgtggggtgaaagttctgtgccctgca #### Tdrd1_ID12205_6 --> 0 - 0 Original Alignment GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGT-CTCCAACTCAAGAAAACCATGGAGATAAAG caggcaagatgggtggcttcagcccaatcctgccttcttccttcctaaagGTTGACTGCCCCCCAGAAGTT---AGACAAATTACAGTAGGCGCTGAGAGAGTTATGTTCTCTGATTTAAGAACTCCTTCAGC-AATGAAAACAATGGAGATAAAAgtgagtggatttgtctcctcctttcctcccatatgtgatccccttggctc Alignment from CESAR GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG caggcaagatgggtggcttcagcccaatcctgccttcttccttcctaaagGTTGACTGCCCCCCAGAAGTT---AGACAAATTACAGTAGGCGCTGAGAGAGTTATGTTCTCTGATTTAAGAACTCCTTCAGCAATGAAAACAATGGAGATAAAAgtgagtggatttgtctcctcctttcctcccatatgtgatccccttggctc Alignment from Spaln_aa2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG caggcaagatgggtggcttcagcccaatcctgccttcttccttcctaaagGTTGACTGCCCCCCAGAAGTT---AGACAAATTACAGTAGGCGCTGAGAGAGTTATGTTCTCTGATTTAAGAACTCCTTCAGCAATGAAAACAATGGAGATAAAAgtgagtggatttgtctcctcctttcctcccatatgtgatccccttggctc Alignment from Spaln_nt2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG caggcaagatgggtggcttcagcccaatcctgccttcttccttcctaaagGTTGACTGCCCCCCAGAAGT---TAGACAAATTACAGTAGGCGCTGAGAGAGTTATGTTCTCTGATTTAAGAACTCCTTCAGCAATGAAAACAATGGAGATAAAAgtgagtggatttgtctcctcctttcctcccatatgtgatccccttggctc Alignment from Pairagon GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG caggcaagatgggtggcttcagcccaatcctgccttcttccttcctaaagGTTGACTGCCCCCCAGAAGT---TAGACAAATTACAGTAGGCGCTGAGAGAGTTATGTTCTCTGATTTAAGAACTCCTTCAGCAATGAAAACAATGGAGATAAAAgtgagtggatttgtctcctcctttcctcccatatgtgatccccttggctc Alignment from Exonerate_protein2genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG caggcaagatgggtggcttcagcccaatcctgccttcttccttcctaaagGTTGACTGCCCCCCAGAAGTT---AGACAAATTACAGTAGGCGCTGAGAGAGTTATGTTCTCTGATTTAAGAACTCCTTCAGCAATGAAAACAATGGAGATAAAAgtgagtggatttgtctcctcctttcctcccatatgtgatccccttggctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG caggcaagatgggtggcttcagcccaatcctgccttcttccttcctaaagGTTGACTGCCCCCCAGAAGTT---AGACAAATTACAGTAGGCGCTGAGAGAGTTATGTTCTCTGATTTAAGAACTCCTTCAGCAATGAAAACAATGGAGATAAAAgtgagtggatttgtctcctcctttcctcccatatgtgatccccttggctc #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGAGACTGCTGTTGC-ACAGAGTTACAGAAACAG tgtgactatagcatccacccaattccaatcagcattctctgttgtggcagagATACCTCACAGTAGGGACTGCTGTTGCCACAG-ATTACAGAAACAGgtgagaatttactgctgctcaacaagctgcttcccattgacatagaactc Alignment from CESAR agATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgactatagcatccacccaattccaatcagcattctctgttgtggcagagATACCTCACAGTAGGGACTGCTGTTGCCACAGATTACAGAAACAGgtgagaatttactgctgctcaacaagctgcttcccattgacatagaactc Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgactatagcatccacccaattccaatcagcattctctgttgtggcagAGATACCTCACAGTAGGGACTGCTGTTGCCACAGATTACAGAAACAGgtgagaatttactgctgctcaacaagctgcttcccattgacatagaactc Alignment from Spaln_nt2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgactatagcatccacccaattccaatcagcattctctgttgtggcagAGATACCTCACAGTAGGGACTGCTGTTGCCACAGATTACAGAAACAGgtgagaatttactgctgctcaacaagctgcttcccattgacatagaactc Alignment from Pairagon AGATACCACACAGCAGAGACTGCTGTTG-CACAGAGTTACAGAAACAG tgtgactatagcatccacccaattccaatcagcattctctgttgtggcagAGATACCTCACAGTAGGGACTGCTGTTGCCACAGA-TTACAGAAACAGgtgagaatttactgctgctcaacaagctgcttcccattgacatagaactc Alignment from Exonerate_protein2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgactatagcatccacccaattccaatcagcattctctgttgtggcagAGATACCTCACAGTAGGGACTGCTGTTGCCACAGATTACAGAAACAGgtgagaatttactgctgctcaacaagctgcttcccattgacatagaactc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgactatagcatccacccaattccaatcagcattctctgttgtggcagAGATACCTCACAGTAGGGACTGCTGTTGCCACAGATTACAGAAACAGgtgagaatttactgctgctcaacaagctgcttcccattgacatagaactc #### Tex40_ID1868_4 --> 0 - 1 Original Alignment CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTG-GATATTCTCAAAAAAGCCCTCATCa ctctcccctaccacacaggccatggccaatagctctgcttctttttgtagCGGCCCCTCCCCCTCATGGAGTTCATGGAAAGTGAAGTGCTGCTATATTCTCA-AAAGGTCCTTATTagtcagtctgcatctcacctgctgcttatgcaagtgccttctgtgtgttct Alignment from CESAR CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa ctctcccctaccacacaggccatggccaatagctctgcttctttttgtagCGGCCCCTCCCCCTCATGGAGTTCATGGAAAGTGAAGTGCTGCTATATTCTCAAAAGGTCCTTATTagtcagtctgcatctcacctgctgcttatgcaagtgccttctgtgtgttct Alignment from Spaln_aa2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA ctctcccctaccacacaggccatggccaatagctctgcttctttttgtagCGGCCCCTCCCCCTCATGGAGTTCATGGAAAGTGAAGTGCTGCTATATTCTCAAAAGGTCCTTATTAgtcagtctgcatctcacctgctgcttatgcaagtgccttctgtgtgttct Alignment from Spaln_nt2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGG-ATATTCTCAAAAAAGCCCTCATCA ctctcccctaccacacaggccatggccaatagctctgcttctttttgtagCGGCCCCTCCCCCTCATGGAGTTCATGGAAAGTGAAGTGCTGCTATATTCTC-AAAAGGTCCTTATTAgtcagtctgcatctcacctgctgcttatgcaagtgccttctgtgtgttct Alignment from Pairagon CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGG-ATATTCTCAAAAAAGCCCTCATCA ctctcccctaccacacaggccatggccaatagctctgcttctttttgtagCGGCCCCTCCCCCTCATGGAGTTCATGGAAAGTGAAGTGCTGCTATATTCTC-AAAAGGTCCTTATTAgtcagtctgcatctcacctgctgcttatgcaagtgccttctgtgtgttct Alignment from Exonerate_protein2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA ctctcccctaccacacaggccatggccaatagctctgcttctttttgtagCGGCCCCTCCCCCTCATGGAGTTCATGGAAAGTGAAGTGCTGCTATATTCTCAAAAGGTCCTTATTAgtcagtctgcatctcacctgctgcttatgcaagtgccttctgtgtgttct Alignment from Exonerate_coding2genome ctctcccctaccacacaggccatggccaatagctctgcttctttttgtagcggcccctccccctcatggagttcatggaaagtgaagtgctgctatattctcaaaaggtccttattagtcagtctgcatctcacctgctgcttatgcaagtgccttctgtgtgttct Alignment from GeneWise CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA ctctcccctaccacacaggccatggccaatagctctgcttctttttgtagCGGCCCCTCCCCCTCATGGAGTTCATGGAAAGTGAAGTGCTGCTATATTCTCAAAAGGTCCTTATTAgtcagtctgcatctcacctgctgcttatgcaagtgccttctgtgtgttct #### Tjp2_ID5273_14 --> 1 - 1 Original Alignment aGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTC-TGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAg gttctaggtgagcttgacagaatatgagtgatatgttgcctctttcctagaGCTGAGCAAATAGCAAGTGTCCAAAATGCTCAACAGGAGAATCCTGGTGATCGAGCAGACTTCCTGGCGAATGC-TGGCCAGAGACCAAGCAGCTGCATTAAGAAGAACTTATTACATAAGAGCCGGGAGGATCTAGCAGCTGCGGTATCTGTTAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGggtaagataagtgcatatatatgggcactctggcacttcatagtcctgagg Alignment from CESAR aGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAACCTC---CGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAg gttctaggtgagcttgacagaatatgagtgatatgttgcctctttcctagaGCTGAGCAAATAGCAAGTGTCCAAAATGCTCAACAGGAGAATCCTGGTGATCGAGCAGACTTCCTGGCGAATGCTGGCCAGAGACCAAGCAGCTGCATTAAGAAGAACTTATTACATAAGAGCCGGGAGGATCTAGCAGCTGCGGTATCTGTTAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGggtaagataagtgcatatatatgggcactctggcacttcatagtcctgagg Alignment from Spaln_aa2Genome AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttctaggtgagcttgacagaatatgagtgatatgttgcctctttcctagAGCTGAGCAAATAGCAAGTGTCCAAAATGCTCAACAGGAGAATCCTGGTGATCGAGCAGACTTCCTGGCGAATGCTGGCCAGAGACCAAGCAGCTGCATTAAGAAGAACTTATTACATAAGAGCCGGGAGGATCTAGCAGCTGCGGTATCTGTTAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaagataagtgcatatatatgggcactctggcacttcatagtcctgagg Alignment from Spaln_nt2Genome AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTC-TGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAACCTC---CGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttctaggtgagcttgacagaatatgagtgatatgttgcctctttcctagAGCTGAGCAAATAGCAAGTGTCCAAAATGCTCAACAGGAGAATCCTGGTGATCGAGCAGACTTCCTGGCGAATGC-TGGCCAGAGACCAAGCAGCTGCATTAAGAAGAACTTATTACATAAGAGCCGGGAGGATCTAGCAGCTGCGGTATCTGTTAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaagataagtgcatatatatgggcactctggcacttcatagtcctgagg Alignment from Pairagon AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTT-CTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttctaggtgagcttgacagaatatgagtgatatgttgcctctttcctagAGCTGAGCAAATAGCAAGTGTCCAAAATGCTCAACAGGAGAATCCTGGTGATCGAGCAGACTTCCTGGCGAATGC-TGGCCAGAGACCAAGCAGCTGCATTAAGAAGAACTTATTACATAAGAGCCGGGAGGATCTAGCAGCTGCGGTATCTGTTAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaagataagtgcatatatatgggcactctggcacttcatagtcctgagg Alignment from Exonerate_protein2genome AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttctaggtgagcttgacagaatatgagtgatatgttgcctctttcctagAGCTGAGCAAATAGCAAGTGTCCAAAATGCTCAACAGGAGAATCCTGGTGATCGAGCAGACTTCCTGGCGAATGCTGGCCAGAGACCAAGCAGCTGCATTAAGAAGAACTTATTACATAAGAGCCGGGAGGATCTAGCAGCTGCGGTATCTGTTAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaagataagtgcatatatatgggcactctggcacttcatagtcctgagg Alignment from Exonerate_coding2genome AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttctaggtgagcttgacagaatatgagtgatatgttgcctctttcctagAGCTGAGCAAATAGCAAGTGTCCAAAATGCTCAACAGGAGAATCCTGGTGATCGAGCAGACTTCCTGGCGAATGCTGGCCAGAGACCAAGCAGCTGCATTAAGAAGAACTTATTACATAAGAGCCGGGAGGATCTAGCAGCTGCGGTATCTGTTAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaagataagtgcatatatatgggcactctggcacttcatagtcctgagg Alignment from GeneWise AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAACCTC---CGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttctaggtgagcttgacagaatatgagtgatatgttgcctctttcctagAGCTGAGCAAATAGCAAGTGTCCAAAATGCTCAACAGGAGAATCCTGGTGATCGAGCAGACTTCCTGGCGAATGCTGGCCAGAGACCAAGCAGCTGCATTAAGAAGAACTTATTACATAAGAGCCGGGAGGATCTAGCAGCTGCGGTATCTGTTAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaagataagtgcatatatatgggcactctggcacttcatagtcctgagg #### Tjp2_ID5274_13 --> 2 - 2 Original Alignment tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTC-CGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag ggtgtagttgtctcctcgcaggtagagccctggtggggctttgtttacagctTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGAGAGGTCTTTCCGAGTGGTAG-CACACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTGATCCCCAACAAAAGCaggtaatcaccccattctgtcagaccccatcccaaaagacagcggccccgtg Alignment from CESAR tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag ggtgtagttgtctcctcgcaggtagagccctggtggggctttgtttacagctTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGAGAGGTCTTTCCGAGTGGTAGCACACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTGATCCCCAACAAAAGCaggtaatcaccccattctgtcagaccccatcccaaaagacagcggccccgtg Alignment from Spaln_aa2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtagttgtctcctcgcaggtagagccctggtggggctttgtttacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGAGAGGTCTTTCCGAGTGGTAGCACACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTGATCCCCAACAAAAGCAGgtaatcaccccattctgtcagaccccatcccaaaagacagcggccccgtg Alignment from Spaln_nt2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTT-CCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtagttgtctcctcgcaggtagagccctggtggggctttgtttacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGAGAGGTCTTTCCGAGTGGTAG-CACACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTGATCCCCAACAAAAGCAGgtaatcaccccattctgtcagaccccatcccaaaagacagcggccccgtg Alignment from Pairagon TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTC-TTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtagttgtctcctcgcaggtagagccctggtggggctttgtttacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGAGAGGTCTTTCCGAGTGGTAG-CACACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTGATCCCCAACAAAAGCAGgtaatcaccccattctgtcagaccccatcccaaaagacagcggccccgtg Alignment from Exonerate_protein2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtagttgtctcctcgcaggtagagccctggtggggctttgtttacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGAGAGGTCTTTCCGAGTGGTAGCACACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTGATCCCCAACAAAAGCAGgtaatcaccccattctgtcagaccccatcccaaaagacagcggccccgtg Alignment from Exonerate_coding2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtagttgtctcctcgcaggtagagccctggtggggctttgtttacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGAGAGGTCTTTCCGAGTGGTAGCACACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTGATCCCCAACAAAAGCAGgtaatcaccccattctgtcagaccccatcccaaaagacagcggccccgtg Alignment from GeneWise TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtagttgtctcctcgcaggtagagccctggtggggctttgtttacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGAGAGGTCTTTCCGAGTGGTAGCACACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTGATCCCCAACAAAAGCAGgtaatcaccccattctgtcagaccccatcccaaaagacagcggccccgtg #### Tjp2_ID5278_9 --> 1 - 1 Original Alignment cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCC-ACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg ttgttattcaataaagcattggccatattggtgggctctggaaccttcagcTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACCACAGGTG-CCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCA---AATCAGCAAAAAGGCCCAggtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from CESAR cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg ttgttattcaataaagcattggccatattggtgggctctggaaccttcagcTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACCACAGGTGCCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAggtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Spaln_aa2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACCACAGGTGCCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Spaln_nt2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGT-CCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACCACAGGTG-CCTCACAGCTGCAGGAGTTA---TGGCCAGTAAGGAGCCAA---ATCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Pairagon CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGT-CCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACCACAGGTG-CCTCACAGCTGCAGGAGTTAT---GGCCAGTAAGGAGCCAA---ATCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Exonerate_protein2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACCACAGGTGCCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Exonerate_coding2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACCACAGGTGCCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from GeneWise CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACCACAGGTGCCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAA-GTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tttgcttcaagagaaggtgttgtcaaccacctcatggctttggttttcagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGCATGGAGAATAGCAATGTGGATCGTATTGC-TGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCagtaattatactcccaacatctagcttcacttactgtgaaataaacttact Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tttgcttcaagagaaggtgttgtcaaccacctcatggctttggttttcagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGCATGGAGAATAGCAATGTGGATCGTATTGCTGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCagtaattatactcccaacatctagcttcacttactgtgaaataaacttact Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaagagaaggtgttgtcaaccacctcatggctttggttttcagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGCATGGAGAATAGCAATGTGGATCGTATTGCTGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaattatactcccaacatctagcttcacttactgtgaaataaacttact Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaagagaaggtgttgtcaaccacctcatggctttggttttcagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGCATGGAGAATAGCAATGTGGATCGTATTGCTGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaattatactcccaacatctagcttcacttactgtgaaataaacttact Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGA-AGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaagagaaggtgttgtcaaccacctcatggctttggttttcagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGCATGGAGAATAGCAATGTGGATCGTATTGC-TGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaattatactcccaacatctagcttcacttactgtgaaataaacttact Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaagagaaggtgttgtcaaccacctcatggctttggttttcagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGCATGGAGAATAGCAATGTGGATCGTATTGCTGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaattatactcccaacatctagcttcacttactgtgaaataaacttact Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaagagaaggtgttgtcaaccacctcatggctttggttttcagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGCATGGAGAATAGCAATGTGGATCGTATTGCTGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaattatactcccaacatctagcttcacttactgtgaaataaacttact Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaagagaaggtgttgtcaaccacctcatggctttggttttcagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGCATGGAGAATAGCAATGTGGATCGTATTGCTGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaattatactcccaacatctagcttcacttactgtgaaataaacttact #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGG-TGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg gttggctaggtctttgagggcttcaatcggtaaagccttcctttcttcaggtCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTTGTGTCTGGGTGGCTGGGGCA-GGTACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGCggtaatatgatggctacaatgtatcccaggactgagttcagtaggtggagg Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg gttggctaggtctttgagggcttcaatcggtaaagccttcctttcttcaggtCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTTGTGTCTGGGTGGCTGGGGCAGGTACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGCggtaatatgatggctacaatgtatcccaggactgagttcagtaggtggagg Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gttggctaggtctttgagggcttcaatcggtaaagccttcctttcttcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTTGTGTCTGGGTGGCTGGGGCAGGTACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGCGgtaatatgatggctacaatgtatcccaggactgagttcagtaggtggagg Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gttggctaggtctttgagggcttcaatcggtaaagccttcctttcttcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTTGTGTCTGGGTGGCTGGGGCAGGTACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGCGgtaatatgatggctacaatgtatcccaggactgagttcagtaggtggagg Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gttggctaggtctttgagggcttcaatcggtaaagccttcctttcttcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTTGTGTCTGGGTGGCTGGGGCAGGTACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGCGgtaatatgatggctacaatgtatcccaggactgagttcagtaggtggagg Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gttggctaggtctttgagggcttcaatcggtaaagccttcctttcttcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTTGTGTCTGGGTGGCTGGGGCAGGTACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGCGgtaatatgatggctacaatgtatcccaggactgagttcagtaggtggagg Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gttggctaggtctttgagggcttcaatcggtaaagccttcctttcttcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTTGTGTCTGGGTGGCTGGGGCAGGTACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGCGgtaatatgatggctacaatgtatcccaggactgagttcagtaggtggagg Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gttggctaggtctttgagggcttcaatcggtaaagccttcctttcttcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTTGTGTCTGGGTGGCTGGGGCAGGTACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGCGgtaatatgatggctacaatgtatcccaggactgagttcagtaggtggagg #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGC-CTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg taccctgtgatatgacccatgtcctgtggtgtggttttcctttatttcagGTAGCTGAAGGTCGTAGAAC-GAAGGATAAGAGTCGCTTGCAATACCCTATTAATggtaagtcagttttactctgcctaaatcagctttctggcagtgaaagttac Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg taccctgtgatatgacccatgtcctgtggtgtggttttcctttatttcagGTAGCTGAAGGTCGTAGAACGAAGGATAAGAGTCGCTTGCAATACCCTATTAATggtaagtcagttttactctgcctaaatcagctttctggcagtgaaagttac Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgtgatatgacccatgtcctgtggtgtggttttcctttatttcagGTAGCTGAAGGTCGTAGAACGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtaagtcagttttactctgcctaaatcagctttctggcagtgaaagttac Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgtgatatgacccatgtcctgtggtgtggttttcctttatttcagGTAGCTGAAGGTCGTAGAACGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtaagtcagttttactctgcctaaatcagctttctggcagtgaaagttac Alignment from Pairagon GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgtgatatgacccatgtcctgtggtgtggttttcctttatttcagGTAGCTGAAGGTCGTAGAACGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtaagtcagttttactctgcctaaatcagctttctggcagtgaaagttac Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgtgatatgacccatgtcctgtggtgtggttttcctttatttcagGTAGCTGAAGGTCGTAGAACGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtaagtcagttttactctgcctaaatcagctttctggcagtgaaagttac Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgtgatatgacccatgtcctgtggtgtggttttcctttatttcagGTAGCTGAAGGTCGTAGAACGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtaagtcagttttactctgcctaaatcagctttctggcagtgaaagttac Alignment from GeneWise -----------------------------------------------------GCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG TACCCTGTGATATGACCCATGTCCTGTGGTGTGGTTTTCCTTTATTTCAGGTAGCTGAAGGTCGTAGAACGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtaagtcagttttactctgcctaaatcagctttctggcagtgaaagttac #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTG-GCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG aggcattatactcatgctcccaatccaattgtgtgtctcttttgtcttaggtGTTGCAGCTTTGTTGATACTGCTGCCAGCCACCATGTCCCACTTCCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGCGCCCTAC-AGCTTACCTACCTGGTCTGGAGGAGCTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtaagcgatctaccctgtgatatgacccatgtcctgtgtgtgtctggggc Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG aggcattatactcatgctcccaatccaattgtgtgtctcttttgtcttaggtGTTGCAGCTTTGTTGATACTGCTGCCAGCCACCATGTCCCACTTCCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGCGCCCTACAGCTTACCTACCTGGTCTGGAGGAGCTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtaagcgatctaccctgtgatatgacccatgtcctgtggtgtggttttcc Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG aggcattatactcatgctcccaatccaattgtgtgtctcttttgtcttagGTGTTGCAGCTTTGTTGATACTGCTGCCAGCCACCATGTCCCACTTCCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGCGCCCTACAGCTTACCTACCTGGTCTGGAGGAGCTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtaagcgatctaccctgtgatatgacccatgtcctgtgtgtgtctggggc Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG aggcattatactcatgctcccaatccaattgtgtgtctcttttgtcttagGTGTTGCAGCTTTGTTGATACTGCTGCCAGCCACCATGTCCCACTTCCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGCGCCCTACAGCTTACCTACCTGGTCTGGAGGAGCTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtaagcgatctaccctgtgatatgacccatgtcctgtgtgtgtctggggc Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG aggcattatactcatgctcccaatccaattgtgtgtctcttttgtcttagGTGTTGCAGCTTTGTTGATACTGCTGCCAGCCACCATGTCCCACTTCCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGCGCCCTACAGCTTACCTACCTGGTCTGGAGGAGCTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtaagcgatctaccctgtgatatgacccatgtcctgtgtgtgtctggggc Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG aggcattatactcatgctcccaatccaattgtgtgtctcttttgtcttagGTGTTGCAGCTTTGTTGATACTGCTGCCAGCCACCATGTCCCACTTCCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGCGCCCTACAGCTTACCTACCTGGTCTGGAGGAGCTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtaagcgatctaccctgtgatatgacccatgtcctgtgtgtgtctggggc Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG aggcattatactcatgctcccaatccaattgtgtgtctcttttgtcttagGTGTTGCAGCTTTGTTGATACTGCTGCCAGCCACCATGTCCCACTTCCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGCGCCCTACAGCTTACCTACCTGGTCTGGAGGAGCTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtaagcgatctaccctgtgatatgacccatgtcctgtgtgtgtctggggc Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAGGTG----------------------------------------------- aggcattatactcatgctcccaatccaattgtgtgtctcttttgtcttagGTGTTGCAGCTTTGTTGATACTGCTGCCAGCCACCATGTCCCACTTCCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGCGCCCTACAGCTTACCTACCTGGTCTGGAGGAGCTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGGTAAGCGATCTACCCTGTGATATGACCCATGTCCTGTGTGTGTCTGGGGC #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATC-ATCTCCTTGAACCTTACAATTag caggttcactttgtggtaggttcttaattcccccacttccacccccacagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCTGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATTCATCTCTC-GAATCTTACAATAaggtaggatgtagaataggtccactcagaggtgcaaactaaatttagttcct Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag caggttcactttgtggtaggttcttaattcccccacttccacccccacagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCTGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATTCATCTCTCGAATCTTACAATAaggtaggatgtagaataggtccactcagaggtgcaaactaaatttagttcct Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG caggttcactttgtggtaggttcttaattcccccacttccacccccacagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCTGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATTCATCTCTCGAATCTTACAATAAGgtaggatgtagaataggtccactcagaggtgcaaactaaatttagttcct Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCAT-CATCTCCTTGAACCTTACAATTAG caggttcactttgtggtaggttcttaattcccccacttccacccccacagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCTGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATTCATCT-CTCGAATCTTACAATAAGgtaggatgtagaataggtccactcagaggtgcaaactaaatttagttcct Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCA-TCATCTCCTTGAACCTTACAATTAG caggttcactttgtggtaggttcttaattcccccacttccacccccacagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCTGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATTCATCT-CTCGAATCTTACAATAAGgtaggatgtagaataggtccactcagaggtgcaaactaaatttagttcct Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG caggttcactttgtggtaggttcttaattcccccacttccacccccacagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCTGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATTCATCTCTCGAATCTTACAATAAGgtaggatgtagaataggtccactcagaggtgcaaactaaatttagttcct Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG caggttcactttgtggtaggttcttaattcccccacttccacccccacagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCTGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATTCATCTCTCGAATCTTACAATAAGgtaggatgtagaataggtccactcagaggtgcaaactaaatttagttcct Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG caggttcactttgtggtaggttcttaattcccccacttccacccccacagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCTGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATTCATCTCTCGAATCTTACAATAAGgtaggatgtagaataggtccactcagaggtgcaaactaaatttagttcct #### Tmem180_ID9862_4 --> 1 - 0 Original Alignment cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAA-AACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctgaagccagtataaacatgatgttctgtttttcctaaaaacagtGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACCTTAGGGCAGTACCTCCGCCAACAGGCACACCACCAGCAACTTCC-ATGGTTTGTAGGTATGTATTTGGTGCAGgtgaatcagcctatcccttagctccctgccaggctcaattatgacctgga Alignment from CESAR cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctgaagccagtataaacatgatgttctgtttttcctaaaaacagtGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACCTTAGGGCAGTACCTCCGCCAACAGGCACACCACCAGCAACTTCCATGGTTTGTAGGTATGTATTTGGTGCAGgtgaatcagcctatcccttagctccctgccaggctcaattatgacctgga Alignment from Spaln_aa2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctgaagccagtataaacatgatgttctgtttttcctaaaaacagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACCTTAGGGCAGTACCTCCGCCAACAGGCACACCACCAGCAACTTCCATGGTTTGTAGGTATGTATTTGGTGCAGgtgaatcagcctatcccttagctccctgccaggctcaattatgacctgga Alignment from Spaln_nt2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAA-AACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctgaagccagtataaacatgatgttctgtttttcctaaaaacagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACCTTAGGGCAGTACCTCCGCCAACAGGCACACCACCAGCAACTTCC-ATGGTTTGTAGGTATGTATTTGGTGCAGgtgaatcagcctatcccttagctccctgccaggctcaattatgacctgga Alignment from Pairagon CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctgaagccagtataaacatgatgttctgtttttcctaaaaacagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACCTTAGGGCAGTACCTCCGCCAACAGGCACACCACCAGCAACTTCCATGGTTTGTAGGTATGTATTTGGTGCAGgtgaatcagcctatcccttagctccctgccaggctcaattatgacctgga Alignment from Exonerate_protein2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctgaagccagtataaacatgatgttctgtttttcctaaaaacagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACCTTAGGGCAGTACCTCCGCCAACAGGCACACCACCAGCAACTTCCATGGTTTGTAGGTATGTATTTGGTGCAGgtgaatcagcctatcccttagctccctgccaggctcaattatgacctgga Alignment from Exonerate_coding2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctgaagccagtataaacatgatgttctgtttttcctaaaaacagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACCTTAGGGCAGTACCTCCGCCAACAGGCACACCACCAGCAACTTCCATGGTTTGTAGGTATGTATTTGGTGCAGgtgaatcagcctatcccttagctccctgccaggctcaattatgacctgga Alignment from GeneWise CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctgaagccagtataaacatgatgttctgtttttcctaaaaacagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACCTTAGGGCAGTACCTCCGCCAACAGGCACACCACCAGCAACTTCCATGGTTTGTAGGTATGTATTTGGTGCAGgtgaatcagcctatcccttagctccctgccaggctcaattatgacctgga #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCA---CAA------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGA-AGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgttagaggggaacttctctgctgctcttgttttattacgaacccagGTCCCTGAGTTGGAGCTTACACCCCTGGACACACCACAACAAGCCCTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCAAGGACAGGA-ATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTggtaagatctaattaccctatcatgatgcatggatagacagagcctcattt Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCA---CAAGCCCTGCCCTTG------ACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgttagaggggaacttctctgctgctcttgttttattacgaacccagGTCCCTGAGTTGGAGCTTACACCCCTGGACACACCACAACAAGCCCTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCAAGGACAGGAATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTggtaagatctaattaccctatcatgatgcatggatagacagagcctcattt Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaggggaacttctctgctgctcttgttttattacgaacccagGTCCCTGAGTTGGAGCTTACACCCCTGGACACACCACAACAAGCCCTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCAAGGACAGGAATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTGgtaagatctaattaccctatcatgatgcatggatagacagagcctcattt Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---GCCCTGCCCTTGAC------ACTAGTCCATGGTACATTCTGGA---AGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaggggaacttctctgctgctcttgttttattacgaacccagGTCCCTGAGTTGGAGCTTACACCCCTGGACACACCACAACAAGCCCTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGG---GTCACATCAAGGACAGGAATGCAATCATCTCGCTTCAGGATTGCC---AGACCCAGGCACCATCAGTGgtaagatctaattaccctatcatgatgcatggatagacagagcctcattt Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATC-----------------CACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaggggaacttctctgctgctcttgttttattacgaacccagGTCCCTGAGTTGGAGCTTACACCCCTGGACACACCACAACAAGCCCTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGGT--------------------CACATCAAGGACAGGAATGCAATCATCTCGCTTCAGGATTGCC---AGACCCAGGCACCATCAGTGgtaagatctaattaccctatcatgatgcatggatagacagagcctcattt Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaggggaacttctctgctgctcttgttttattacgaacccagGTCCCTGAGTTGGAGCTTACACCCCTGGACACACCACAACAAGCCCTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCAAGGACAGGAATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTGgtaagatctaattaccctatcatgatgcatggatagacagagcctcattt Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCGGC gaatgttagaggggaacttctctgctgctcttgttttattacgaacccagGTCCCTGAGTTGGAGCTTACACCCCTGGACACACCACAACAAGCCCTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCAAGGACAGGAATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTGGTaagatctaattaccctatcatgatgcatggatagacagagcctcattt Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCC---------CTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaggggaacttctctgctgctcttgttttattacgaacccagGTCCCTGAGTTGGAGCTTACACCCCTGGACACACCACAACAAGCCCTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCATCCATTTTGCTCAAGGGG---TCACATCAAGGACAGGAATGCAATCATCTCGCTTCAGGATTGCCA---GACCCAGGCACCATCAGTGgtaagatctaattaccctatcatgatgcatggatagacagagcctcattt #### Tut1_ID2551_4 --> 2 - 0 Original Alignment gcTGTGTGGTCCATCCT-TTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG gcatctctggaaccatgtcacttatcctacagcttcctgcctgtacccaggcTGTGTGGTCCATCCTCTTTGGAT-TACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTTTTGGACATGGGAGATATGGAAGAGACTGAGgtgagggggtaaagagtgtctgccatgtaatctcagataagtaaagtatt Alignment from CESAR gcTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG gcatctctggaaccatgtcacttatcctacagcttcctgcctgtacccaggcTGTGTGGTCCATCCTCTTTGGATTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTTTTGGACATGGGAGATATGGAAGAGACTGAGgtgagggggtaaagagtgtctgccatgtaatctcagataagtaaagtatt Alignment from Spaln_aa2Genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG gcatctctggaaccatgtcacttatcctacagcttcctgcctgtacccagGCTGTGTGGTCCATCCTCTTTGGATTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTTTTGGACATGGGAGATATGGAAGAGACTGAGgtgagggggtaaagagtgtctgccatgtaatctcagataagtaaagtatt Alignment from Spaln_nt2Genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG gcatctctggaaccatgtcacttatcctacagcttcctgcctgtacccagGCTGTGTGGTCCATCCTCTTTGGATTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTTTTGGACATGGGAGATATGGAAGAGACTGAGgtgagggggtaaagagtgtctgccatgtaatctcagataagtaaagtatt Alignment from Pairagon GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG gcatctctggaaccatgtcacttatcctacagcttcctgcctgtacccagGCTGTGTGGTCCATCCTCTTTGGATTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTTTTGGACATGGGAGATATGGAAGAGACTGAGgtgagggggtaaagagtgtctgccatgtaatctcagataagtaaagtatt Alignment from Exonerate_protein2genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG gcatctctggaaccatgtcacttatcctacagcttcctgcctgtacccagGCTGTGTGGTCCATCCTCTTTGGATTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTTTTGGACATGGGAGATATGGAAGAGACTGAGgtgagggggtaaagagtgtctgccatgtaatctcagataagtaaagtatt Alignment from Exonerate_coding2genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG gcatctctggaaccatgtcacttatcctacagcttcctgcctgtacccagGCTGTGTGGTCCATCCTCTTTGGATTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTTTTGGACATGGGAGATATGGAAGAGACTGAGgtgagggggtaaagagtgtctgccatgtaatctcagataagtaaagtatt Alignment from GeneWise GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG gcatctctggaaccatgtcacttatcctacagcttcctgcctgtacccagGCTGTGTGGTCCATCCTCTTTGGATTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTTTTGGACATGGGAGATATGGAAGAGACTGAGgtgagggggtaaagagtgtctgccatgtaatctcagataagtaaagtatt #### Tut1_ID2554_7 --> 2 - 1 Original Alignment gaGGTGGCCCCCTTCTCAATAACTACGCCTTG-ACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg ttgacacaaagacttgtttttgcaattatgaaactgctgtgtctcatcaggaGGTGGCCCACTACTCAACAATTAT---GTACACCTTGT-GGTGATCTACCTGCTTCAGACAAGAGACCCACCAGTACTACCTAGTGTAGCCCAGCTGACCCAGAGGGCAggtaggaatggcgtctgcctctgtaacccagacactctggctggtatgact Alignment from CESAR gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg ttgacacaaagacttgtttttgcaattatgaaactgctgtgtctcatcaggaGGTGGCCCACTACTCAACAATTAT---GTACACCTTGTGGTGATCTACCTGCTTCAGACAAGAGACCCACCAGTACTACCTAGTGTAGCCCAGCTGACCCAGAGGGCAggtaggaatggcgtctgcctctgtaacccagacactctggctggtatgact Alignment from Spaln_aa2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ttgacacaaagacttgtttttgcaattatgaaactgctgtgtctcatcagGAGGTGGCCCACTACTCAACAATTAT---GTACACCTTGTGGTGATCTACCTGCTTCAGACAAGAGACCCACCAGTACTACCTAGTGTAGCCCAGCTGACCCAGAGGGCAGgtaggaatggcgtctgcctctgtaacccagacactctggctggtatgact Alignment from Spaln_nt2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ttgacacaaagacttgtttttgcaattatgaaactgctgtgtctcatcagGAGGTGGCCCACTACTCAACAATTATG--TACACCTTG-TGGTGATCTACCTGCTTCAGACAAGAGACCCACCAGTACTACCTAGTGTAGCCCAGCTGACCCAGAGGGCAGgtaggaatggcgtctgcctctgtaacccagacactctggctggtatgact Alignment from Pairagon GAGGTGGCCCCCTTCTCAATAACTACG----CCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ttgacacaaagacttgtttttgcaattatgaaactgctgtgtctcatcagGAGGTGGCCCACTACTCAACAATTATGTACACCTTG-------TGGTGATCTACCTGCTTCAGACAAGAGACCCACCAGTACTACCTAGTGTAGCCCAGCTGACCCAGAGGGCAGgtaggaatggcgtctgcctctgtaacccagacactctggctggtatgact Alignment from Exonerate_protein2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ttgacacaaagacttgtttttgcaattatgaaactgctgtgtctcatcagGAGGTGGCCCACTACTCAACAATTAT---GTACACCTTGTGGTGATCTACCTGCTTCAGACAAGAGACCCACCAGTACTACCTAGTGTAGCCCAGCTGACCCAGAGGGCAGgtaggaatggcgtctgcctctgtaacccagacactctggctggtatgact Alignment from Exonerate_coding2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ttgacacaaagacttgtttttgcaattatgaaactgctgtgtctcatcagGAGGTGGCCCACTACTCAACAATTAT---GTACACCTTGTGGTGATCTACCTGCTTCAGACAAGAGACCCACCAGTACTACCTAGTGTAGCCCAGCTGACCCAGAGGGCAGgtaggaatggcgtctgcctctgtaacccagacactctggctggtatgact Alignment from GeneWise GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ttgacacaaagacttgtttttgcaattatgaaactgctgtgtctcatcagGAGGTGGCCCACTACTCAACAATTAT---GTACACCTTGTGGTGATCTACCTGCTTCAGACAAGAGACCCACCAGTACTACCTAGTGTAGCCCAGCTGACCCAGAGGGCAGgtaggaatggcgtctgcctctgtaacccagacactctggctggtatgact #### Ubxn1_ID2442_6 --> 1 - 0 Original Alignment aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAA-GCAGAGAGAGCCAAGAAG tttgtcttgtgtctatgtttgttttataattataactgttttacttgtagaCAGAGAACTCGTGAAAAGATTGAAAGAGACAGACGCCG-AAGGACTAAAAAGgtatgagatcacaaaatttgtacttgcctaggagggaatctaggtaactt Alignment from CESAR aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgtgtctatgtttgttttataattataactgttttacttgtagaCAGAGAACTCGTGAAAAGATTGAAAGAGACAGACGCCGAAGGACTAAAAAGgtatgagatcacaaaatttgtacttgcctaggagggaatctaggtaactt Alignment from Spaln_aa2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgtgtctatgtttgttttataattataactgttttacttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGACGCCGAAGGACTAAAAAGgtatgagatcacaaaatttgtacttgcctaggagggaatctaggtaactt Alignment from Spaln_nt2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAA-GCAGAGAGAGCCAAGAAG tttgtcttgtgtctatgtttgttttataattataactgttttacttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGACGCCGA-AGGACTAAAAAGgtatgagatcacaaaatttgtacttgcctaggagggaatctaggtaactt Alignment from Pairagon ACAAAGGGTTCGAGAAAAAATTGAAAGGGAC-----------------AAAG tttgtcttgtgtctatgtttgttttataattataactgttttacttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGACGCCGAAGGACTAAAAAGgtatgagatcacaaaatttgtacttgcctaggagggaatctaggtaactt Alignment from Exonerate_protein2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgtgtctatgtttgttttataattataactgttttacttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGACGCCGAAGGACTAAAAAGgtatgagatcacaaaatttgtacttgcctaggagggaatctaggtaactt Alignment from Exonerate_coding2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgtgtctatgtttgttttataattataactgttttacttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGACGCCGAAGGACTAAAAAGgtatgagatcacaaaatttgtacttgcctaggagggaatctaggtaactt Alignment from GeneWise ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgtgtctatgtttgttttataattataactgttttacttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGACGCCGAAGGACTAAAAAGgtatgagatcacaaaatttgtacttgcctaggagggaatctaggtaactt #### Uhrf2_ID6376_7 --> 1 - 0 Original Alignment gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGA-CTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCCTCAAGC-GACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from CESAR gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCCTCAAGCGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Spaln_aa2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCCTCAAGCGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Spaln_nt2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGAC-TCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCCTCAAGC-GACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Pairagon GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGA-CTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCCTCAAGC-GACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Exonerate_protein2genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCCTCAAGCGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Exonerate_coding2genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCCTCAAGCGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from GeneWise GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCCTCAAGCGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag #### Vegfb_ID1955_5 --> 1 - 2 Original Alignment aCCAAAAAAAAAG-GAGAGTGCTGTGAAGCCAGACag agctatgacctaacagctggaatttgactgttcatgtgctcttctttcagaCCTAAAAAGAAGCGAGT-TACTGTTCGGCCTGACcagtgaggctattctgtcctgcaccttttagtgcatcggggggggtataaaa Alignment from CESAR aCCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACag agctatgacctaacagctggaatttgactgttcatgtgctcttctttcagaCCTAAAAAGAAGCGAGTTACTGTTCGGCCTGACcagtgaggctattctgtcctgcaccttttagtgcatcggggggggtataaaa Alignment from Spaln_aa2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG agctatgacctaacagctggaatttgactgttcatgtgctcttctttcagACCTAAAAAGAAGCGAGTTACTGTTCGGCCTGACCAgtgaggctattctgtcctgcaccttttagtgcatcggggggggtataaaa Alignment from Spaln_nt2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG agctatgacctaacagctggaatttgactgttcatgtgctcttctttcagACCTAAAAAGAAGCGAGTTACTGTTCGGCCTGACCAgtgaggctattctgtcctgcaccttttagtgcatcggggggggtataaaa Alignment from Pairagon agctatgacctaacagctggaatttgactgttcatgtgctcttctttcagacctaaaaagaagcgagttactgttcggcctgaccagtgaggctattctgtcctgcaccttttagtgcatcggggggggtataaaa Alignment from Exonerate_protein2genome agctatgacctaacagctggaatttgactgttcatgtgctcttctttcagacctaaaaagaagcgagttactgttcggcctgaccagtgaggctattctgtcctgcaccttttagtgcatcggggggggtataaaa Alignment from Exonerate_coding2genome agctatgacctaacagctggaatttgactgttcatgtgctcttctttcagacctaaaaagaagcgagttactgttcggcctgaccagtgaggctattctgtcctgcaccttttagtgcatcggggggggtataaaa Alignment from GeneWise agctatgacctaacagctggaatttgactgttcatgtgctcttctttcagacctaaaaagaagcgagttactgttcggcctgaccagtgaggctattctgtcctgcaccttttagtgcatcggggggggtataaaa #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCC-CTGGAAGAACACAGCCAATGTGAATGCag aagtttatctcttagcttcttagaaacataatattttaaaaatttttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAG-ACACAGCCAATGTGAATGCaggtgagagacagtctcagtacccatggtctggcatgtgttagggccatttg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttatctcttagcttcttagaaacataatattttaaaaatttttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCaggtgagagacagtctcagtacccatggtctggcatgtgttagggccatttg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcttcttagaaacataatattttaaaaatttttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagagacagtctcagtacccatggtctggcatgtgttagggccatttg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcttcttagaaacataatattttaaaaatttttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagagacagtctcagtacccatggtctggcatgtgttagggccatttg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcttcttagaaacataatattttaaaaatttttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagagacagtctcagtacccatggtctggcatgtgttagggccatttg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcttcttagaaacataatattttaaaaatttttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagagacagtctcagtacccatggtctggcatgtgttagggccatttg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcttcttagaaacataatattttaaaaatttttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagagacagtctcagtacccatggtctggcatgtgttagggccatttg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttatctcttagcttcttagaaacataatattttaaaaatttttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagagacagtctcagtacccatggtctggcatgtgttagggccatttg #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGT-AGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aaatggatatagaaaacaaggaattggggagcctctctatgtgcctgcagacATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTCAGTCATGGCT-CCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAggtaaaaaagtagctgagcaatgatacgaggttcggagtgtaacttactgt Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aaatggatatagaaaacaaggaattggggagcctctctatgtgcctgcagacATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTCAGTCATGGCTCCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAggtaaaaaagtagctgagcaatgatacgaggttcggagtgtaacttactgt Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaaggaattggggagcctctctatgtgcctgcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTCAGTCATGGCTCCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaaaaaagtagctgagcaatgatacgaggttcggagtgtaacttactgt Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaaggaattggggagcctctctatgtgcctgcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTCAGTCATGGCTCCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaaaaaagtagctgagcaatgatacgaggttcggagtgtaacttactgt Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGT-AGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaaggaattggggagcctctctatgtgcctgcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTCAGTCATGGCT-CCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaaaaaagtagctgagcaatgatacgaggttcggagtgtaacttactgt Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaaggaattggggagcctctctatgtgcctgcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTCAGTCATGGCTCCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaaaaaagtagctgagcaatgatacgaggttcggagtgtaacttactgt Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaaggaattggggagcctctctatgtgcctgcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTCAGTCATGGCTCCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaaaaaagtagctgagcaatgatacgaggttcggagtgtaacttactgt Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGGCAAAGAG aaatggatatagaaaacaaggaattggggagcctctctatgtgcctgcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTCAGTCATGGCTCCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGGTAAAAAAgtagctgagcaatgatacgaggttcggagtgtaacttactgt #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTG-CACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ctctatgaagtcaagatactggttctctagaaatgtttttttgttcctagacCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACCACATGCTCT-TAGTGTTGACCTTAATGGTCAAGATCGTAGGATTGTGCTCAAGTCACTAAAGTTCCTAGCTCATCCTCTTGCCCTCTCTATATTTGAGgtaacttatatgccatatgaccttgtatcaatgagtatagtaaaaagagt Alignment from CESAR acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTG---CACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ctctatgaagtcaagatactggttctctagaaatgtttttttgttcctagacCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACCACATGCTCTT---AGTGTTGACCTTAATGGTCAAGATCGTAGGATTGTGCTCAAGTCACTAAAGTTCCTAGCTCATCCTCTTGCCCTCTCTATATTTGAGgtaacttatatgccatatgaccttgtatcaatgagtatagtaaaaagagt Alignment from Spaln_aa2Genome CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG tatgaagtcaagatactggttctctagaaatgtttttttgttccta gACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACCACATGCTCTTAGTGTTGACCTTAATGGTCAAGATCGTAGGATTGTGCTCAAGTCACTAAAGTTCCTAGCTCATCCTCTTGCCCTCTCTATATTTGAGgtaacttatatgccatatgaccttgtatcaatgagtatagtaaaaagagt Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGC-ACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ctctatgaagtcaagatactggttctctagaaatgtttttttgttcctagACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACCACATGCTCT-TAGTGTTGACCTTAATGGTCAAGATCGTAGGATTGTGCTCAAGTCACTAAAGTTCCTAGCTCATCCTCTTGCCCTCTCTATATTTGAGgtaacttatatgccatatgaccttgtatcaatgagtatagtaaaaagagt Alignment from Pairagon ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTG-CACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ctctatgaagtcaagatactggttctctagaaatgtttttttgttcctagACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACCACATGCTCT-TAGTGTTGACCTTAATGGTCAAGATCGTAGGATTGTGCTCAAGTCACTAAAGTTCCTAGCTCATCCTCTTGCCCTCTCTATATTTGAGgtaacttatatgccatatgaccttgtatcaatgagtatagtaaaaagagt Alignment from Exonerate_protein2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ctctatgaagtcaagatactggttctctagaaatgtttttttgttcctagACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACCACATGCTCTTAGTGTTGACCTTAATGGTCAAGATCGTAGGATTGTGCTCAAGTCACTAAAGTTCCTAGCTCATCCTCTTGCCCTCTCTATATTTGAGgtaacttatatgccatatgaccttgtatcaatgagtatagtaaaaagagt Alignment from Exonerate_coding2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ctctatgaagtcaagatactggttctctagaaatgtttttttgttcctagACCTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACCACATGCTCTTAGTGTTGACCTTAATGGTCAAGATCGTAGGATTGTGCTCAAGTCACTAAAGTTCCTAGCTCATCCTCTTGCCCTCTCTATATTTGAGgtaacttatatgccatatgaccttgtatcaatgagtatagtaaaaagagt Alignment from GeneWise TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG ctctatgaagtcaagatactggttctctagaaatgtttttttgttcctagAC---CTGGTCAAAAGCCGTCTCTATTGGTTAGATGCCAAGTTACCACATGCTCTTAGTGTTGACCTTAATGGTCAAGATCGTAGGATTGTGCTCAAGTCACTAAAGTTCCTAGCTCATCCTCTTGCCCTCTCTATATTTGAGgtaacttatatgccatatgaccttgtatcaatgagtatagtaaaaagagt #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg gacagtgatgtcacctcaggttttcatctagcctgttccttcttttctagGGGGCTATCCAAGGTCCTGAAGAATTTCGTAG-AGGAATGGCATTAGGATTAAAAGCACTGATTGGTGGAGCTGTTggtagtttgtaacaggactagtgatgcaagtaacaagtaacaccagtgggg Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg gacagtgatgtcacctcaggttttcatctagcctgttccttcttttctagGGGGCTATCCAAGGTCCTGAAGAATTTCGTAGAGGAATGGCATTAGGATTAAAAGCACTGATTGGTGGAGCTGTTggtagtttgtaacaggactagtgatgcaagtaacaagtaacaccagtgggg Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacctcaggttttcatctagcctgttccttcttttctagGGGGCTATCCAAGGTCCTGAAGAATTTCGTAGAGGAATGGCATTAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtagtttgtaacaggactagtgatgcaagtaacaagtaacaccagtgggg Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacctcaggttttcatctagcctgttccttcttttctagGGGGCTATCCAAGGTCCTGAAGAATTTCGTAGAGGAATGGCATTAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtagtttgtaacaggactagtgatgcaagtaacaagtaacaccagtgggg Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacctcaggttttcatctagcctgttccttcttttctagGGGGCTATCCAAGGTCCTGAAGAATTTCGTAGA-GGAATGGCATTAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtagtttgtaacaggactagtgatgcaagtaacaagtaacaccagtgggg Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacctcaggttttcatctagcctgttccttcttttctagGGGGCTATCCAAGGTCCTGAAGAATTTCGTAGAGGAATGGCATTAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtagtttgtaacaggactagtgatgcaagtaacaagtaacaccagtgggg Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacctcaggttttcatctagcctgttccttcttttctagGGGGCTATCCAAGGTCCTGAAGAATTTCGTAGAGGAATGGCATTAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtagtttgtaacaggactagtgatgcaagtaacaagtaacaccagtgggg Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGGT- gacagtgatgtcacctcaggttttcatctagcctgttccttcttttctagGGGGCTATCCAAGGTCCTGAAGAATTTCGTAGAGGAATGGCATTAGGATTAAAAGCACTGATTGGTGGAGCTGTTGGTAgtttgtaacaggactagtgatgcaagtaacaagtaacaccagtgggg #### Vps13a_ID4067_56 --> 0 - 0 Original Alignment GTT---------CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACA-TCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaatcgctttcttgttaatattcctacagGTTCATGTAACACGTCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACACATAGTACATC-GTGGACATTTCGGATTCAGATTTACAGGATTCAGgtaaagttgagaatggaatgaggacaagaatgacaccatgagtccttatc Alignment from CESAR GTT---------CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaatcgctttcttgttaatattcctacagGTTCATGTAACACGTCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACACATAGTACATCGTGGACATTTCGGATTCAGATTTACAGGATTCAGgtaaagttgagaatggaatgaggacaagaatgacaccatgagtccttatc Alignment from Spaln_aa2Genome GTTCGTTTAACACCT---------AGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaatcgctttcttgttaatattcctacagGTTCATGTAACACGTCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACACATAGTACATCGTGGACATTTCGGATTCAGATTTACAGGATTCAGgtaaagttgagaatggaatgaggacaagaatgacaccatgagtccttatc Alignment from Spaln_nt2Genome GTTCGTTTAACAC---------CTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCT-GCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaatcgctttcttgttaatattcctacagGTTCATGTAACACGTCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACACATAGTACATC-GTGGACATTTCGGATTCAGATTTACAGGATTCAGgtaaagttgagaatggaatgaggacaagaatgacaccatgagtccttatc Alignment from Pairagon GTT---------CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCT-GCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaatcgctttcttgttaatattcctacagGTTCATGTAACACGTCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACACATAGTACATC-GTGGACATTTCGGATTCAGATTTACAGGATTCAGgtaaagttgagaatggaatgaggacaagaatgacaccatgagtccttatc Alignment from Exonerate_protein2genome GTT---CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaatcgctttcttgttaatattcctacaggttcatGTAACACGTCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACACATAGTACATCGTGGACATTTCGGATTCAGATTTACAGGATTCAGgtaaagttgagaatggaatgaggacaagaatgacaccatgagtccttatc Alignment from Exonerate_coding2genome GTT---CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaatcgctttcttgttaatattcctacaggttcatGTAACACGTCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACACATAGTACATCGTGGACATTTCGGATTCAGATTTACAGGATTCAGgtaaagttgagaatggaatgaggacaagaatgacaccatgagtccttatc Alignment from GeneWise ---------GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaatcgctttcttgttaatattcctacagGTTCATGTAACACGTCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACACATAGTACATCGTGGACATTTCGGATTCAGATTTACAGGATTCAGgtaaagttgagaatggaatgaggacaagaatgacaccatgagtccttatc #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAA-ATTTTTTTACTCATAGTGCCTTCTTCTa ctggcgagtcctcattccataaaaacccttttctacctttttcaaaacaggtAGCCTTAGACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAACATCTTTT-ACTCATAGTACCTTCTTCTagtgagtcacttaaagtaggtcatacagcttttgctttttcccgggtataa Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ctggcgagtcctcattccataaaaacccttttctacctttttcaaaacaggtAGCCTTAGACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAACATCTTTTACTCATAGTACCTTCTTCTagtgagtcacttaaagtaggtcatacagcttttgctttttcccgggtataa Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctggcgagtcctcattccataaaaacccttttctacctttttcaaaacagGTAGCCTTAGACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAACATCTTTTACTCATAGTACCTTCTTCTAgtgagtcacttaaagtaggtcatacagcttttgctttttcccgggtataa Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctggcgagtcctcattccataaaaacccttttctacctttttcaaaacagGTAGCCTTAGACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAACATCTTTTACTCATAGTACCTTCTTCTAgtgagtcacttaaagtaggtcatacagcttttgctttttcccgggtataa Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctggcgagtcctcattccataaaaacccttttctacctttttcaaaacagGTAGCCTTAGACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAACATCTTTTACTCATAGTACCTTCTTCTAgtgagtcacttaaagtaggtcatacagcttttgctttttcccgggtataa Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctggcgagtcctcattccataaaaacccttttctacctttttcaaaacagGTAGCCTTAGACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAACATCTTTTACTCATAGTACCTTCTTCTAgtgagtcacttaaagtaggtcatacagcttttgctttttcccgggtataa Alignment from Exonerate_coding2genome ctggcgagtcctcattccataaaaacccttttctacctttttcaaaacaggtagccttagacttaaaatcccatggaaaaacctttatactcaacctgttggagcagttctggaagaacatcttttactcatagtaccttcttctagtgagtcacttaaagtaggtcatacagcttttgctttttcccgggtataa Alignment from GeneWise TCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctggcgagtcctcattccataaaaacccttttctacctttttcaaaacaggtagCCTTAGACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAACATCTTTTACTCATAGTACCTTCTTCTAgtgagtcacttaaagtaggtcatacagcttttgctttttcccgggtataa #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCA-GAAATTGATTTTCGGCAAg aaaggcatttcaggagccacacaaatccgctacgcacttactgccgccagtTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCACGAGA-TGACTTTCGGCAAggtaagtgcgccattgtgttcttgagaacgaaagtattccgccaaatctta Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg aaaggcatttcaggagccacacaaatccgctacgcacttactgccgccagtTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCACGAGATGACTTTCGGCAAggtaagtgcgccattgtgttcttgagaacgaaagtattccgccaaacactg Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaaggcatttcaggagccacacaaatccgctacgcacttactgccgccagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCACGAGATGACTTTCGGCAAGgtaagtgcgccattgtgttcttgagaacgaaagtattccgccaaatctta Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaaggcatttcaggagccacacaaatccgctacgcacttactgccgccagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCACGAGATGACTTTCGGCAAGgtaagtgcgccattgtgttcttgagaacgaaagtattccgccaaatctta Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaaggcatttcaggagccacacaaatccgctacgcacttactgccgccagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCACGAGATGACTTTCGGCAAGgtaagtgcgccattgtgttcttgagaacgaaagtattccgccaaatctta Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaaggcatttcaggagccacacaaatccgctacgcacttactgccgccagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCACGAGATGACTTTCGGCAAGgtaagtgcgccattgtgttcttgagaacgaaagtattccgccaaatctta Alignment from Exonerate_coding2genome aaaggcatttcaggagccacacaaatccgctacgcacttactgccgccagttctgtcattgtggggaatactcatggtcagctggcacgagatgactttcggcaaggtaagtgcgccattgtgttcttgagaacgaaagtattccgccaaatctta Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAGGGCG aaaggcatttcaggagccacacaaatccgctacgcacttactgccgccagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCACGAGATGACTTTCGGCAAGGTAAgtgcgccattgtgttcttgagaacgaaagtattccgccaaatctta #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGG-ATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtattccgccaaacactggttttgtttgttcttaggcAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTGCATTGCCATCCTTCAAAGCCCCTATTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGCATACGCA-CCCTTGCGGTGTGGAGCACAAGgtgacttcgagcaaacgttacttagtagttctagtagtagggctatgaca Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtattccgccaaacactggttttgtttgttcttaggcAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTGCATTGCCATCCTTCAAAGCCCCTATTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGCATACGCACCCTTGCGGTGTGGAGCACAAGgtgacttcgagcaaacgttacttagtagttctagtagtagggctatgaca Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtattccgccaaacactggttttgtttgttcttagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTGCATTGCCATCCTTCAAAGCCCCTATTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGCATACGCACCCTTGCGGTGTGGAGCACAAGgtgacttcgagcaaacgttacttagtagttctagtagtagggctatgaca Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGG-ATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtattccgccaaacactggttttgtttgttcttagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTGCATTGCCATCCTTCAAAGCCCCTATTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGCATACGC-ACCCTTGCGGTGTGGAGCACAAGgtgacttcgagcaaacgttacttagtagttctagtagtagggctatgaca Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGC------------------TAGAGCATAAG ttcttgagaacgaaagtattccgccaaacactggttttgtttgttcttagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTGCATTGCCATCCTTCAAAGCCCCTATTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACA------------------GGCATACGCACCCTTGCGGTGTGGAGCACAAGgtgacttcgagcaaacgttacttagtagttctagtagtagggctatgaca Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtattccgccaaacactggttttgtttgttcttagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTGCATTGCCATCCTTCAAAGCCCCTATTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGCATACGCACCCTTGCGGTGTGGAGCACAAGgtgacttcgagcaaacgttacttagtagttctagtagtagggctatgaca Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtattccgccaaacactggttttgtttgttcttagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTGCATTGCCATCCTTCAAAGCCCCTATTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGCATACGCACCCTTGCGGTGTGGAGCACAAGgtgacttcgagcaaacgttacttagtagttctagtagtagggctatgaca Alignment from GeneWise TCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaacgaaagtattccgccaaacactggttttgtttgttcttaggcagGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTGCATTGCCATCCTTCAAAGCCCCTATTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGCATACGCACCCTTGCGGTGTGGAGCACAAGgtgacttcgagcaaacgttacttagtagttctagtagtagggctatgaca #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGT-GGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT gacactgcagacactgaatttttaattgggctttcttctcttatccctaggcTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTCGGGTATT-CAGCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtgagttgttcgtgtcctctttcttctcagCTACACCGTTTTGTGTCTGT Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT gacactgcagacactgaatttttaattgggctttcttctcttatccctaggcTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTCGGGTATTCAGCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtgagctgtctcaccatctcccgtccacagCTACACCGTTTTGTGTCTGT Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG------------------------------CTGCACCGTTTTGTGTCCGT gacactgcagacactgaatttttaattgggctttcttctcttatccctagGCTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTCGGGTATTCAGCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGGTGAGTTGTTCGTGTCCTCTTTCTTCTCAGCTACACCGTTTTGTGTCTGT Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAG------------------------------AGCTGCACCGTTTTGTGTCCGT gacactgcagacactgaatttttaattgggctttcttctcttatccctagGCTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTCGGGTATTCAGCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGGTGAGTTGTTCGTGTCCTCTTTCTTCTCAGCTACACCGTTTTGTGTCTGT Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGT-GGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT gacactgcagacactgaatttttaattgggctttcttctcttatccctagGCTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTCGGGTATT-CAGCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtgagttgttcgtgtcctctttcttctcagCTACACCGTTTTGTGTCTGT Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT gacactgcagacactgaatttttaattgggctttcttctcttatccctagGCTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTCGGGTATTCAGCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtgagttgttcgtgtcctctttcttctcagCTACACCGTTTTGTGTCTGT Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT gacactgcagacactgaatttttaattgggctttcttctcttatccctagGCTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTCGGGTATTCAGCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtgagttgttcgtgtcctctttcttctcagCTACACCGTTTTGTGTCTGT Alignment from GeneWise GGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG------------------------------CTGCACCGTTTTGTGTCCGT gacactgcagacactgaatttttaattgggctttcttctcttatccctaGGCTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTCGGGTATTCAGCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGGTGAGTTGTTCGTGTCCTCTTTCTTCTCAGCTACACCGTTTTGTGTCTGT #### Yif1a_ID832_4 --> 0 - 1 Original Alignment AACTGGAAAATG-CAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcaagttattttattgctcatgttgctagttttggtcatctgtgcagAACTGGAAAATGCCAGTATA-CCACGATGTGCCTCTACCTCCTCGAAAAGATCTGAATACCCCTGACCTTTATATCCCAagtcagtgtttaccaggccagggggaatggctctccgtgccagtgatgatg Alignment from CESAR AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcaagttattttattgctcatgttgctagttttggtcatctgtgcagAACTGGAAAATGCCAGTATACCACGATGTGCCTCTACCTCCTCGAAAAGATCTGAATACCCCTGACCTTTATATCCCAagtcagtgtttaccaggccagggggaatggctctccgtgccagtgatgatg Alignment from Spaln_aa2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatgttgctagttttggtcatctgtgcagAACTGGAAAATGCCAGTATACCACGATGTGCCTCTACCTCCTCGAAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtcagtgtttaccaggccagggggaatggctctccgtgccagtgatgatg Alignment from Spaln_nt2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatgttgctagttttggtcatctgtgcagAACTGGAAAATGCCAGTATACCACGATGTGCCTCTACCTCCTCGAAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtcagtgtttaccaggccagggggaatggctctccgtgccagtgatgatg Alignment from Pairagon AACTGGAAAATGCAATACAG----CCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatgttgctagttttggtcatctgtgcagAACTGGAAAATGC----CAGTATACCACGATGTGCCTCTACCTCCTCGAAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtcagtgtttaccaggccagggggaatggctctccgtgccagtgatgatg Alignment from Exonerate_protein2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatgttgctagttttggtcatctgtgcagAACTGGAAAATGCCAGTATACCACGATGTGCCTCTACCTCCTCGAAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtcagtgtttaccaggccagggggaatggctctccgtgccagtgatgatg Alignment from Exonerate_coding2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatgttgctagttttggtcatctgtgcagAACTGGAAAATGCCAGTATACCACGATGTGCCTCTACCTCCTCGAAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtcagtgtttaccaggccagggggaatggctctccgtgccagtgatgatg Alignment from GeneWise AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatgttgctagttttggtcatctgtgcagAACTGGAAAATGCCAGTATACCACGATGTGCCTCTACCTCCTCGAAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtcagtgtttaccaggccagggggaatggctctccgtgccagtgatgatg #### Zdhhc6_ID11620_9 --> 1 - 1 Original Alignment aTACTGGTTGTATGGAGAC-AAAATTCTTGATGATTCCTTCATAGAAg gagggggttctttatcaagaaactgaaactttgtgcttttgttcttgtagaTACTGGTTGTATGGAGACCAAAATTC-GGACGATTCTTTCAGAGAAggtgaggtaccaaagcagtatgataggttgtgattgagtgtaatgcacctt Alignment from CESAR aTACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAg gagggggttctttatcaagaaactgaaactttgtgcttttgttcttgtagaTACTGGTTGTATGGAGACCAAAATTCGGACGATTCTTTCAGAGAAggtgaggtaccaaagcagtatgataggttgtgattgagtgtaatgcacctt Alignment from Spaln_aa2Genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatcaagaaactgaaactttgtgcttttgttcttgtagATACTGGTTGTATGGAGACCAAAATTCGGACGATTCTTTCAGAGAAGgtgaggtaccaaagcagtatgataggttgtgattgagtgtaatgcacctt Alignment from Spaln_nt2Genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatcaagaaactgaaactttgtgcttttgttcttgtagATACTGGTTGTATGGAGACCAAAATTCGGACGATTCTTTCAGAGAAGgtgaggtaccaaagcagtatgataggttgtgattgagtgtaatgcacctt Alignment from Pairagon ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatcaagaaactgaaactttgtgcttttgttcttgtagATACTGGTTGTATGGAGACCAAAATTCGGACGATTCTTTCAGAGAAGgtgaggtaccaaagcagtatgataggttgtgattgagtgtaatgcacctt Alignment from Exonerate_protein2genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatcaagaaactgaaactttgtgcttttgttcttgtagATACTGGTTGTATGGAGACCAAAATTCGGACGATTCTTTCAGAGAAGgtgaggtaccaaagcagtatgataggttgtgattgagtgtaatgcacctt Alignment from Exonerate_coding2genome gagggggttctttatcaagaaactgaaactttgtgcttttgttcttgtagatactggttgtatggagaccaaaattcggacgattctttcagagaaggtgaggtaccaaagcagtatgataggttgtgattgagtgtaatgcacctt Alignment from GeneWise ------------------------------------------------CGATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG GAGGGGGTTCTTTATCAAGAAACTGAAACTTTGTGCTTTTGTTCTTGTAGATACTGGTTGTATGGAGACCAAAATTCGGACGATTCTTTCAGAGAAGgtgaggtaccaaagcagtatgataggttgtgattgagtgtaatgcacctt #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAAC-AGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag agtgttctataatggagataaatcatcactaattgtcccataatttatagggACAGCCAGTGGCTCTAATCAGTC-CACCTCAGATGCTGCATCAGCTCAGAAACCAGATGCTGGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACTTCTGACAAATCAaggtgggtagggccattgcattttctagtctatacttctaagcctttaacct Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag agtgttctataatggagataaatcatcactaattgtcccataatttatagggACAGCCAGTGGCTCTAATCAGTCCACCTCAGATGCTGCATCAGCTCAGAAACCAGATGCTGGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACTTCTGACAAATCAaggtgggtagggccattgcattttctagtctatacttctaagcctttaacct Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG agtgttctataatggagataaatcatcactaattgtcccataatttatagGGACAGCCAGTGGCTCTAATCAGTCCACCTCAGATGCTGCATCAGCTCAGAAACCAGATGCTGGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACTTCTGACAAATCAAGgtgggtagggccattgcattttctagtctatacttctaagcctttaacct Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAA-CAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG agtgttctataatggagataaatcatcactaattgtcccataatttatagGGACAGCCAGTGGCTCTAATCAGTCC-ACCTCAGATGCTGCATCAGCTCAGAAACCAGATGCTGGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACTTCTGACAAATCAAGgtgggtagggccattgcattttctagtctatacttctaagcctttaacct Alignment from Pairagon GGACAGCTAGTGGTTCCAA-CAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG agtgttctataatggagataaatcatcactaattgtcccataatttatagGGACAGCCAGTGGCTCTAATCAGTCC-ACCTCAGATGCTGCATCAGCTCAGAAACCAGATGCTGGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACTTCTGACAAATCAAGgtgggtagggccattgcattttctagtctatacttctaagcctttaacct Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG agtgttctataatggagataaatcatcactaattgtcccataatttatagGGACAGCCAGTGGCTCTAATCAGTCCACCTCAGATGCTGCATCAGCTCAGAAACCAGATGCTGGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACTTCTGACAAATCAAGgtgggtagggccattgcattttctagtctatacttctaagcctttaacct Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG agtgttctataatggagataaatcatcactaattgtcccataatttatagGGACAGCCAGTGGCTCTAATCAGTCCACCTCAGATGCTGCATCAGCTCAGAAACCAGATGCTGGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACTTCTGACAAATCAAGgtgggtagggccattgcattttctagtctatacttctaagcctttaacct Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG agtgttctataatggagataaatcatcactaattgtcccataatttatagGGACAGCCAGTGGCTCTAATCAGTCCACCTCAGATGCTGCATCAGCTCAGAAACCAGATGCTGGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACTTCTGACAAATCAAGgtgggtagggccattgcattttctagtctatacttctaagcctttaacct #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTag atagaggttgaatttttggcagtgtatggatgtcttgatgccccctgtagacGTTCCTGAAGAGCAACCGAA-CCCTGGTGGGATCaggtaagaggttgctcgctatacacccaatgtttcatattgcagagtgttac Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag atagaggttgaatttttggcagtgtatggatgtcttgatgccccctgtagacGTTCCTGAAGAGCAACCGAACCCTGGTGGGATCaggtaagaggttgctcgctatacacccaatgtttcatattgcagagtgttac Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgaatttttggcagtgtatggatgtcttgatgccccctgtagACGTTCCTGAAGAGCAACCGAACCCTGGTGGGATCAGgtaagaggttgctcgctatacacccaatgtttcatattgcagagtgttac Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgaatttttggcagtgtatggatgtcttgatgccccctgtagACGTTCCTGAAGAGCAACCGAACCCTGGTGGGATCAGgtaagaggttgctcgctatacacccaatgtttcatattgcagagtgttac Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgaatttttggcagtgtatggatgtcttgatgccccctgtagACGTTCCTGAAGAGCAACCGAACCCTGGTGGGATCAGgtaagaggttgctcgctatacacccaatgtttcatattgcagagtgttac Alignment from Exonerate_protein2genome atagaggttgaatttttggcagtgtatggatgtcttgatgccccctgtagacgttcctgaagagcaaccgaaccctggtgggatcaggtaagaggttgctcgctatacacccaatgtttcatattgcagagtgttac Alignment from Exonerate_coding2genome atagaggttgaatttttggcagtgtatggatgtcttgatgccccctgtagacgttcctgaagagcaaccgaaccctggtgggatcaggtaagaggttgctcgctatacacccaatgtttcatattgcagagtgttac Alignment from GeneWise ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgaatttttggcagtgtatggatgtcttgatgccccctgtagACGTTCCTGAAGAGCAACCGAACCCTGGTGGGATCAGgtaagaggttgctcgctatacacccaatgtttcatattgcagagtgttac #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATCACT-CTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg attttgatgccctccatgggccttgttaactggtatcttctgtttaacagagCGTCGACGGTTCCCAGGGCATCACAACATCACTCCTCCGAGCCC-GGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAggtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg attttgatgccctccatgggccttgttaactggtatcttctgtttaacagagCGTCGACGGTTCCCAGGGCATCACAACATCACTCCTCCGAGCCCGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAggtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCCTCCGAGCCCGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCCTCCGAGCCCGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCCTCCGAGCCCGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCCTCCGAGCCCGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCCTCCGAGCCCGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCCTCCGAGCCCGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGT-GACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gccgcttgaaatgcagcctggcattagacatcgcccctcctccctccaagatAAAACTTTCAGCTCCTTCTATCAAGGAGGCCGAAT-CCCCCTCTTAAGACTGCTGCAGAAACCAGCCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCTGGTCTAGTTCTGGTATTACACCAGTGCTGGGCCACTCCAACTACTAGC---TTAGATCAGCCTCAATGGCCAATTCTGTCAGATgcgtaagtcgtaaacggagaatgtcccacatacagggtttgcatgctttgta Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gccgcttgaaatgcagcctggcattagacatcgcccctcctccctccaagatAAAACTTTCAGCTCCTTCTATCAAGGAGGCCGAATCCCCCTCTTAAGACTGCTGCAGAAACCAGCCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCTGGTCTAGTTCTGGTATTACACCAGTGCTGGGCCACTCCAACTACTAGC---TTAGATCAGCCTCAATGGCCAATTCTGTCAGATgcgtaagtcgtaaacggagaatgtcccacatacagggtttgcatgctttgta Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gccgcttgaaatgcagcctggcattagacatcgcccctcctccctccaagATAAAACTTTCAGCTCCTTCTATCAAGGAGGCCGAATCCCCCTCTTAAGACTGCTGCAGAAACCAGCCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCTGGTCTAGTTCTGGTATTACACCAGTGCTGGGCCACTCCAACTACTAGC---TTAGATCAGCCTCAATGGCCAATTCTGTCAGATGCgtaagtcgtaaacggagaatgtcccacatacagggtttgcatgctttgta Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gccgcttgaaatgcagcctggcattagacatcgcccctcctccctccaagATAAAACTTTCAGCTCCTTCTATCAAGGAGGCCGAATCCCCCTCTTAAGACTGCTGCAGAAACCAGCCTATGTGCAGGTGCGGCTCCTGCAGAAAACTG---CTGGTCTAGTTCTGGTATTACACCAGTGCTGGGCCACTCCAACTACTAG---CTTAGATCAGCCTCAATGGCCAATTCTGTCAGATGCgtaagtcgtaaacggagaatgtcccacatacagggtttgcatgctttgta Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGG-----GAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gccgcttgaaatgcagcctggcattagacatcgcccctcctccctccaagATAAAACTTTCAGCTCCTTCTATCAAGGAGGCCGAAT-----CCCCCTCTTAAGACTGCTGCAGAAACCAGCCTATGTGCAGGTGCGGCTCCTGCAGAAAACTG---CTGGTCTAGTTCTGGTATTACACCAGTGCTGGGCCACTCCAACTACTAG---CTTAGATCAGCCTCAATGGCCAATTCTGTCAGATGCgtaagtcgtaaacggagaatgtcccacatacagggtttgcatgctttgta Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gccgcttgaaatgcagcctggcattagacatcgcccctcctccctccaagATAAAACTTTCAGCTCCTTCTATCAAGGAGGCCGAATCCCCCTCTTAAGACTGCTGCAGAAACCAGCCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCTGGTCTAGTTCTGGTATTACACCAGTGCTGGGCCACTCCAACTACTAGC---TTAGATCAGCCTCAATGGCCAATTCTGTCAGATGCgtaagtcgtaaacggagaatgtcccacatacagggtttgcatgctttgta Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gccgcttgaaatgcagcctggcattagacatcgcccctcctccctccaagATAAAACTTTCAGCTCCTTCTATCAAGGAGGCCGAATCCCCCTCTTAAGACTGCTGCAGAAACCAGCCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCTGGTCTAGTTCTGGTATTACACCAGTGCTGGGCCACTCCAACTACTAGC---TTAGATCAGCCTCAATGGCCAATTCTGTCAGATGCgtaagtcgtaaacggagaatgtcccacatacagggtttgcatgctttgta Alignment from GeneWise -------------------------------------------------GATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG GCCGCTTGAAATGCAGCCTGGCATTAGACATCGCCCCTCCTCCCTCCAAGATAAAACTTTCAGCTCCTTCTATCAAGGAGGCCGAATCCCCCTCTTAAGACTGCTGCAGAAACCAGCCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCTGGTCTAGTTCTGGTATTACACCAGTGCTGGGCCACTCCAACTACTAGC---TTAGATCAGCCTCAATGGCCAATTCTGTCAGATGCgtaagtcgtaaacggagaatgtcccacatacagggtttgcatgctttgta #### Zp1_ID3065_7 --> 1 - 1 Original Alignment gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCT-GTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg ggtgcatgcaaaacagaatgactgaaaatcttctccctgtctccctacagaCTTCATGTTCACTGCATCTTCAATTCTACTGATTTCCTCCCACTACAAGCATCTATCTCT---CCTGACCCACCTGCCCCTCGTAGCAC-ATCTGGAGCCCTTAGGCTGCAATTGAAGATTGCCATGggtgagtggctccagtttggacggtgctttccaaccttgccgcttgaaatg Alignment from CESAR gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg ggtgcatgcaaaacagaatgactgaaaatcttctccctgtctccctacagaCTTCATGTTCACTGCATCTTCAATTCTACTGATTTCCTCCCACTACAAGCATCTATC---TCTCCTGACCCACCTGCCCCTCGTAGCACATCTGGAGCCCTTAGGCTGCAATTGAAGATTGCCATGggtgagtggctccagtttggacggtgctttccaaccttgccgcttgaaatg Alignment from Spaln_aa2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaatgactgaaaatcttctccctgtctccctacagACTTCATGTTCACTGCATCTTCAATTCTACTGATTTCCTCCCACTACAAGCATCTATC---TCTCCTGACCCACCTGCCCCTCGTAGCACATCTGGAGCCCTTAGGCTGCAATTGAAGATTGCCATGGgtgagtggctccagtttggacggtgctttccaaccttgccgcttgaaatg Alignment from Spaln_nt2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaatgactgaaaatcttctccctgtctccctacagACTTCATGTTCACTGCATCTTCAATTCTACTGATTTCCTCCCACTACAAGCATCTA---TCTCTCCTGACCCACCTGCCCCTCGTAGCACATCTGGAGCCCTTAGGCTGCAATTGAAGATTGCCATGGgtgagtggctccagtttggacggtgctttccaaccttgccgcttgaaatg Alignment from Pairagon GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaatgactgaaaatcttctccctgtctccctacagACTTCATGTTCACTGCATCTTCAATTCTACTGATTTCCTCCCACTACAAGCATCTA---TCTCTCCTGACCCACCTGCCCCTCGTAGCACATCTGGAGCCCTTAGGCTGCAATTGAAGATTGCCATGGgtgagtggctccagtttggacggtgctttccaaccttgccgcttgaaatg Alignment from Exonerate_protein2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaatgactgaaaatcttctccctgtctccctacagACTTCATGTTCACTGCATCTTCAATTCTACTGATTTCCTCCCACTACAAGCATCTATC---TCTCCTGACCCACCTGCCCCTCGTAGCACATCTGGAGCCCTTAGGCTGCAATTGAAGATTGCCATGGgtgagtggctccagtttggacggtgctttccaaccttgccgcttgaaatg Alignment from Exonerate_coding2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaatgactgaaaatcttctccctgtctccctacagACTTCATGTTCACTGCATCTTCAATTCTACTGATTTCCTCCCACTACAAGCATCTATC---TCTCCTGACCCACCTGCCCCTCGTAGCACATCTGGAGCCCTTAGGCTGCAATTGAAGATTGCCATGGgtgagtggctccagtttggacggtgctttccaaccttgccgcttgaaatg Alignment from GeneWise GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACG--------------------------------------------------- ggtgcatgcaaaacagaatgactgaaaatcttctccctgtctccctacagACTTCATGTTCACTGCATCTTCAATTCTACTGATTTCCTCCCACTACAAGCATCTATC---TCTCCTGACCCACCTGCCCCTCGTAGCACATCTGGAGCCCTTAGGCTGCAATTGAAGATTGCCATGGGTGAGTGGCTCCAGTTTGGACGGTGCTTTCCAACCTTGCCGCTTGAAATG #### Zp1_ID3068_4 --> 2 - 1 Original Alignment gtACCCATCTGCCCCAGGAGCGGTGCCAG-GTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAg ctgagttttatggccctgtgatcatcttctctatgtcccttatcctgcagggACTCATCTGACTCATGAGTGGTGCCAACGCAGCTT-TGGACATGTACCATGCATGGTTAATGGAAGTCCAAGAGAT------CAGCAGGCTGGTTGTTGTTATGACAGCACCAAAGAAGAGCCCTGCTACTATGGCAACACCagtgggtctatttatgccaggcctgaagtgagactagctagacgccaatct Alignment from CESAR gtACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAg ctgagttttatggccctgtgatcatcttctctatgtcccttatcctgcagggACTCATCTGACTCATGAGTGGTGCCAACGCAGCTTTGGACATGTACCATGCATGGTTAATGGAAGTCCAAGAGAT------CAGCAGGCTGGTTGTTGTTATGACAGCACCAAAGAAGAGCCCTGCTACTATGGCAACACCagtgggtctatttatgccaggcctgaagtgagactagctagacgccaatct Alignment from Spaln_aa2Genome GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG ctgagttttatggccctgtgatcatcttctctatgtcccttatcctgcagGGACTCATCTGACTCATGAGTGGTGCCAACGCAGCTTTGGACATGTACCATGCATGGTTAATGGAAGTCCAAGAGAT------CAGCAGGCTGGTTGTTGTTATGACAGCACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgggtctatttatgccaggcctgaagtgagactagctagacgccaatct Alignment from Spaln_nt2Genome GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG ctgagttttatggccctgtgatcatcttctctatgtcccttatcctgcagGGACTCATCTGACTCATGAGTGGTGCCAACGCAGCTTTGGACATGTACCATGCATGGTTAATGGAAG-TCCAAGAGA-----TCAGCAGGCTGGTTGTTGTTATGACAGCACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgggtctatttatgccaggcctgaagtgagactagctagacgccaatct Alignment from Pairagon GTACCCATCTGCCCCAGGAGCGGTGCCAG---------------GTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG ctgagttttatggccctgtgatcatcttctctatgtcccttatcctgcagGGACTCATCTGACTCATGAGTGGTGCCAACGCAGCTTTGGACATGTA---------------CCATGCATGGTTAATGGAAGTCCAAGAGA------TCAGCAGGCTGGTTGTTGTTATGACAGCACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgggtctatttatgccaggcctgaagtgagactagctagacgccaatct Alignment from Exonerate_protein2genome GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG ctgagttttatggccctgtgatcatcttctctatgtcccttatcctgcagGGACTCATCTGACTCATGAGTGGTGCCAACGCAGCTTTGGACATGTACCATGCATGGTTAATGGAAGTCCAAGAGAT------CAGCAGGCTGGTTGTTGTTATGACAGCACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgggtctatttatgccaggcctgaagtgagactagctagacgccaatct Alignment from Exonerate_coding2genome GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG ctgagttttatggccctgtgatcatcttctctatgtcccttatcctgcagGGACTCATCTGACTCATGAGTGGTGCCAACGCAGCTTTGGACATGTACCATGCATGGTTAATGGAAGTCCAAGAGAT------CAGCAGGCTGGTTGTTGTTATGACAGCACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgggtctatttatgccaggcctgaagtgagactagctagacgccaatct Alignment from GeneWise GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG ctgagttttatggccctgtgatcatcttctctatgtcccttatcctgcagGGACTCATCTGACTCATGAGTGGTGCCAACGCAGCTTTGGACATGTACCATGCATGGTTAATGGAAGTCCAAGAGAT------CAGCAGGCTGGTTGTTGTTATGACAGCACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgggtctatttatgccaggcctgaagtgagactagctagacgccaatct #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACT-GTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg ctcagcagaagcattatccagtagatcacctcttcctcttttgttataagGATGGACGTTTCCACCTGAGGGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATCGCACAAGATGTTACACTGATCTGCCCCAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTTCACCCTATCCCTGAG---------GCTGGGGCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCAAACTCCTGCACCACCCTCACTAGGACTTGGGCCTACAGGATCTACTCGTACCCCACT-ACAATGGGGTACACTTGAGCCATGGGAGCGGACTGAGTTAGACTCTGTGggtgaggcagtctaaaattttgtgtaaactgagttttatggccctgtgatc Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg ctcagcagaagcattatccagtagatcacctcttcctcttttgttataagGATGGACGTTTCCACCTGAGGGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATCGCACAAGATGTTACACTGATCTGCCCCAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTTCACCCTATCCCTGAG---------GCTGGGGCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCAAACTCCTGCACCACCCTCACTAGGACTTGGGCCTACAGGATCTACTCGTACCCCACTACAATGGGGTACACTTGAGCCATGGGAGCGGACTGAGTTAGACTCTGTGggtgaggcagtctaaaattttgtgtaaactgagttttatggccctgtgatc Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG ctcagcagaagcattatccagtagatcacctcttcctcttttgttataagGATGGACGTTTCCACCTGAGGGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATCGCACAAGATGTTACACTGATCTGCCCCAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTTCACCCTATCCCTGAG---------GCTGGGGCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCAAACTCCTGCACCACCCTCACTAGGACTTGGGCCTACAGGATCTACTCGTACCCCACTACAATGGGGTACACTTGAGCCATGGGAGCGGACTGAGTTAGACTCTGTGGgtgaggcagtctaaaattttgtgtaaactgagttttatggccctgtgatc Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACT-GTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG ctcagcagaagcattatccagtagatcacctcttcctcttttgttataagGATGGACGTTTCCACCTGAGGGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATCGCACAAGATGTTACACTGATCTGCCCCAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTTCACCCTATCCCTGA---------GGCTGGGGCTGGACA------TATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCAAACTCCTGCACCACCCTCACTAGGACTTGGGCCTACAGGATCTACTCGTACCCCACT-ACAATGGGGTACACTTGAGCCATGGGAGCGGACTGAGTTAGACTCTGTGGgtgaggcagtctaaaattttgtgtaaactgagttttatggccctgtgatc Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACT-GTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG ctcagcagaagcattatccagtagatcacctcttcctcttttgttataagGATGGACGTTTCCACCTGAGGGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATCGCACAAGATGTTACACTGATCTGCCCCAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTTCACCCTATCCCTGA---------GGCTGGGGCTGGACATA------TTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCAAACTCCTGCACCACCCTCACTAGGACTTGGGCCTACAGGATCTACTCGTACCCCACT-ACAATGGGGTACACTTGAGCCATGGGAGCGGACTGAGTTAGACTCTGTGGgtgaggcagtctaaaattttgtgtaaactgagttttatggccctgtgatc Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG ctcagcagaagcattatccagtagatcacctcttcctcttttgttataagGATGGACGTTTCCACCTGAGGGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATCGCACAAGATGTTACACTGATCTGCCCCAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTTCACCCTATCCCTGAG---------GCTGGGGCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCAAACTCCTGCACCACCCTCACTAGGACTTGGGCCTACAGGATCTACTCGTACCCCACTACAATGGGGTACACTTGAGCCATGGGAGCGGACTGAGTTAGACTCTGTGGgtgaggcagtctaaaattttgtgtaaactgagttttatggccctgtgatc Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG ctcagcagaagcattatccagtagatcacctcttcctcttttgttataagGATGGACGTTTCCACCTGAGGGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATCGCACAAGATGTTACACTGATCTGCCCCAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTTCACCCTATCCCTGAG---------GCTGGGGCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCAAACTCCTGCACCACCCTCACTAGGACTTGGGCCTACAGGATCTACTCGTACCCCACTACAATGGGGTACACTTGAGCCATGGGAGCGGACTGAGTTAGACTCTGTGGgtgaggcagtctaaaattttgtgtaaactgagttttatggccctgtgatc Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG ctcagcagaagcattatccagtagatcacctcttcctcttttgttataagGATGGACGTTTCCACCTGAGGGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATCGCACAAGATGTTACACTGATCTGCCCCAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTTCACCCTATCCCTGAG---------GCTGGGGCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCAAACTCCTGCACCACCCTCACTAGGACTTGGGCCTACAGGATCTACTCGTACCCCACTACAATGGGGTACACTTGAGCCATGGGAGCGGACTGAGTTAGACTCTGTGGgtgaggcagtctaaaattttgtgtaaactgagttttatggccctgtgatc ####