#### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTT-GCCCAGAAAGAAAAAGCAGCCATGGAAg attctaaatggctgcatgagcctttatcctggccattctgtctcctccagg---TGCTCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTACAGCAGATCCGACTCCGCCC-GAAACAAGAAGCAGCTATGAAAggtaaggagagagtagtggattttccccaacattcttgtagggtttactcc Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg attctaaatggctgcatgagcctttatcctggccattctgtctcctccaggTGC---TCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTACAGCAGATCCGACTCCGCCCGAAACAAGAAGCAGCTATGAAAggtaaggagagagtagtggattttccccaacattcttgtagggttatatgg Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attctaaatggctgcatgagcctttatcctggccattctgtctcctccagGTGCTCC---CGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTACAGCAGATCCGACTCCGCCCGAAACAAGAAGCAGCTATGAAAGgtaaggagagagtagtggattttccccaacattcttgtagggtttactcc Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attctaaatggctgcatgagcctttatcctggccattctgtctcctccagGT---GCTCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTACAGCAGATCCGACTCCGCCCGAAACAAGAAGCAGCTATGAAAGgtaaggagagagtagtggattttccccaacattcttgtagggtttactcc Alignment from Pairagon GTCCAGTGCT--CGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attctaaatggctgcatgagcctttatcctggccattctgtctcctccag-----GTGCTCCCGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTACAGCAGATCCGACTCCGCCCGAAACAAGAAGCAGCTATGAAAGgtaaggagagagtagtggattttccccaacattcttgtagggtttactcc Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attctaaatggctgcatgagcctttatcctggccattctgtctcctccagGTGCTCC---CGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTACAGCAGATCCGACTCCGCCCGAAACAAGAAGCAGCTATGAAAGgtaaggagagagtagtggattttccccaacattcttgtagggtttactcc Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attctaaatggctgcatgagcctttatcctggccattctgtctcctccagGTGCTCC---CGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTACAGCAGATCCGACTCCGCCCGAAACAAGAAGCAGCTATGAAAGgtaaggagagagtagtggattttccccaacattcttgtagggtttactcc Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAA--------------------------------------------------- attctaaatggctgcatgagcctttatcctggccattctgtctcctccagGTGCTCC---CGTGCGAACATCACACTATCTGGGAAGAAGCGTAGGAGACTATTACAGCAGATCCGACTCCGCCCGAAACAAGAAGCAGCTATGAAAGGTAAGGAGAGAGTAGTGGATTTTCCCCAACATTCTTGTAGGGTTTACTCC #### 2010012O05Rik_ID10003_2 --> 0 - 0 Original Alignment CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ccgtactatgtagaggcgggatcataacgttttccatatttttgttgcagCTGCTGGGTCAGCGCAG-TCGTAACATGGTACTACAAGAAGATGCTATTTTGCGCTCTGAAGATgtaagatagctattatttcatcatatgcgtcaagattttcagatgtgact Alignment from CESAR CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ccgtactatgtagaggcgggatcataacgttttccatatttttgttgcagCTGCTGGGTCAGCGCAGTCGTAACATGGTACTACAAGAAGATGCTATTTTGCGCTCTGAAGATgtaagatagctattatttcatcatatgcgtcaagattttcagatgtgact Alignment from Spaln_aa2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ccgtactatgtagaggcgggatcataacgttttccatatttttgttgcagCTGCTGGGTCAGCGCAGTCGTAACATGGTACTACAAGAAGATGCTATTTTGCGCTCTGAAGATgtaagatagctattatttcatcatatgcgtcaagattttcagatgtgact Alignment from Spaln_nt2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ccgtactatgtagaggcgggatcataacgttttccatatttttgttgcagCTGCTGGGTCAGCGCAGTCGTAACATGGTACTACAAGAAGATGCTATTTTGCGCTCTGAAGATgtaagatagctattatttcatcatatgcgtcaagattttcagatgtgact Alignment from Pairagon CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ccgtactatgtagaggcgggatcataacgttttccatatttttgttgcagCTGCTGGGTCAGCGCAGTCGTAACATGGTACTACAAGAAGATGCTATTTTGCGCTCTGAAGATgtaagatagctattatttcatcatatgcgtcaagattttcagatgtgact Alignment from Exonerate_protein2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ccgtactatgtagaggcgggatcataacgttttccatatttttgttgcagCTGCTGGGTCAGCGCAGTCGTAACATGGTACTACAAGAAGATGCTATTTTGCGCTCTGAAGATgtaagatagctattatttcatcatatgcgtcaagattttcagatgtgact Alignment from Exonerate_coding2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ccgtactatgtagaggcgggatcataacgttttccatatttttgttgcagCTGCTGGGTCAGCGCAGTCGTAACATGGTACTACAAGAAGATGCTATTTTGCGCTCTGAAGATgtaagatagctattatttcatcatatgcgtcaagattttcagatgtgact Alignment from GeneWise CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ccgtactatgtagaggcgggatcataacgttttccatatttttgttgcagCTGCTGGGTCAGCGCAGTCGTAACATGGTACTACAAGAAGATGCTATTTTGCGCTCTGAAGATgtaagatagctattatttcatcatatgcgtcaagattttcagatgtgact #### 2010012O05Rik_ID10004_3 --> 0 - 2 Original Alignment AGTTTAAGGAAGATGGCAATA-ATAACAACACACCTTCAGTACca gagcaagagctcagatcgtaggagtatgtgcctatttctgatctttccagAGCTTGAGGAAGATGGCAATACATAACAA-ACACTTACAGTACcagtatgaatgcatggctaagtgggcagtggatgaaagtaaaacaggcacgg Alignment from CESAR AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACca gagcaagagctcagatcgtaggagtatgtgcctatttctgatctttccagAGCTTGAGGAAGATGGCAATACATAACAAACACTTACAGTACcagtatgaatgcatggctaagtgggcagtggatgaaagtaaaacaggcacgg Alignment from Spaln_aa2Genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCA gagcaagagctcagatcgtaggagtatgtgcctatttctgatctttccagAGCTTGAGGAAGATGGCAATACATAACAAACACTTACAGTACCAgtatgaatgcatggctaagtgggcagtggatgaaagtaaaacaggcacgg Alignment from Spaln_nt2Genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCA gagcaagagctcagatcgtaggagtatgtgcctatttctgatctttccagAGCTTGAGGAAGATGGCAATACATAACAAACACTTACAGTACCAgtatgaatgcatggctaagtgggcagtggatgaaagtaaaacaggcacgg Alignment from Pairagon AGTTTAAGGAAGATGGCAATA-ATAACAACACACCTTCAGTACCA gagcaagagctcagatcgtaggagtatgtgcctatttctgatctttccagAGCTTGAGGAAGATGGCAATACATAACAA-ACACTTACAGTACCAgtatgaatgcatggctaagtgggcagtggatgaaagtaaaacaggcacgg Alignment from Exonerate_protein2genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAA gagcaagagctcagatcgtaggagtatgtgcctatttctgatctttccagAGCTTGAGGAAGATGGCAATACATAACAAACACTTACAGTACCAGTATGAATGCATGGCTAAGTGggcagtggatgaaagtaaaacaggcacgg Alignment from Exonerate_coding2genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAA gagcaagagctcagatcgtaggagtatgtgcctatttctgatctttccagAGCTTGAGGAAGATGGCAATACATAACAAACACTTACAGTACCAGTATGAATGCATGGCTAAGTGggcagtggatgaaagtaaaacaggcacgg Alignment from GeneWise AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAA gagcaagagctcagatcgtaggagtatgtgcctatttctgatctttccagAGCTTGAGGAAGATGGCAATACATAACAAACACTTACAGTACCAGTATGAATGCATGGCTAAgtgggcagtggatgaaagtaaaacaggcacgg #### A630007B06Rik_ID12189_8 --> 0 - 0 Original Alignment ATGCATCATGCCAAA-ATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aagaccaaaccccatttatatccctggcctaccgtgctttactgttatagATGCATCATGCCAAACATAAAGGAGC-GGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtaagaaagaggaactggtagattttataatcaataatagactactagag Alignment from CESAR ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aagaccaaaccccatttatatccctggcctaccgtgctttactgttatagATGCATCATGCCAAACATAAAGGAGCGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtaagaaagaggaactggtagattttataatcaataatagactactagag Alignment from Spaln_aa2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aagaccaaaccccatttatatccctggcctaccgtgctttactgttatagATGCATCATGCCAAACATAAAGGAGCGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtaagaaagaggaactggtagattttataatcaataatagactactagag Alignment from Spaln_nt2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aagaccaaaccccatttatatccctggcctaccgtgctttactgttatagATGCATCATGCCAAACATAAAGGAGCGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtaagaaagaggaactggtagattttataatcaataatagactactagag Alignment from Pairagon ATGCATCATGCCAAA-ATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aagaccaaaccccatttatatccctggcctaccgtgctttactgttatagATGCATCATGCCAAACATAAAGGAGC-GGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtaagaaagaggaactggtagattttataatcaataatagactactagag Alignment from Exonerate_protein2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aagaccaaaccccatttatatccctggcctaccgtgctttactgttatagATGCATCATGCCAAACATAAAGGAGCGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtaagaaagaggaactggtagattttataatcaataatagactactagag Alignment from Exonerate_coding2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aagaccaaaccccatttatatccctggcctaccgtgctttactgttatagATGCATCATGCCAAACATAAAGGAGCGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtaagaaagaggaactggtagattttataatcaataatagactactagag Alignment from GeneWise ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aagaccaaaccccatttatatccctggcctaccgtgctttactgttatagATGCATCATGCCAAACATAAAGGAGCGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtaagaaagaggaactggtagattttataatcaataatagactactagag #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAG-CTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACCTCAGAG-GACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACCTCAGAGGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACCTCAGAGGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACCTCAGAGGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGC-AAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACCTCAGAG-GACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACCTCAGAGGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACCTCAGAGGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACCTCAGAGGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct #### Abcc2_ID8844_28 --> 0 - 0 Original Alignment GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGG-CCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaggaagaggtggtcactgttatgggatttacttttttgtagGCGCCATGGGTAAATGATAAGGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCCGAGC-AGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAGAAGgtaagaagtacaaaccatctgagtaaactaaaaggtgccgaatagtggga Alignment from CESAR GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaggaagaggtggtcactgttatgggatttacttttttgtagGCGCCATGGGTAAATGATAAGGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCCGAGCAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAGAAGgtaagaagtacaaaccatctgagtaaactaaaaggtgccgaatagtggga Alignment from Spaln_aa2Genome GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaggaagaggtggtcactgttatgggatttacttttttgtagGCGCCATGGGTAAATGATAAGGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCCGAGCAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAGAAGgtaagaagtacaaaccatctgagtaaactaaaaggtgccgaatagtggga Alignment from Spaln_nt2Genome GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaggaagaggtggtcactgttatgggatttacttttttgtagGCGCCATGGGTAAATGATAAGGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCCGAGCAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAGAAGgtaagaagtacaaaccatctgagtaaactaaaaggtgccgaatagtggga Alignment from Pairagon GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGT----------------GCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaggaagaggtggtcactgttatgggatttacttttttgtagGCGCCATGGGTAAATGATAAGGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCCGAGC----------------AGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAGAAGgtaagaagtacaaaccatctgagtaaactaaaaggtgccgaatagtggga Alignment from Exonerate_protein2genome GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaggaagaggtggtcactgttatgggatttacttttttgtagGCGCCATGGGTAAATGATAAGGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCCGAGCAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAGAAGgtaagaagtacaaaccatctgagtaaactaaaaggtgccgaatagtggga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaggaagaggtggtcactgttatgggatttacttttttgtagGCGCCATGGGTAAATGATAAGGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCCGAGCAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAGAAGgtaagaagtacaaaccatctgagtaaactaaaaggtgccgaatagtggga #### Acsl5_ID11603_8 --> 0 - 1 Original Alignment CCTCCGAAGCCAGAGGATCTGAGCGTC-ATCTGTTTCACCAGTGGAACTACAg tcacctctgtaacttgtattgttggcttactttccaatgtctgcccacagCCACCAAAGCCAGAAGATCTTGGCCTGCATTT-CTTTGCTAGTGGGACTACAagtacgtgctctgaaatcccacagtgctacagaaaaaatcacactccagct Alignment from CESAR CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAg tcacctctgtaacttgtattgttggcttactttccaatgtctgcccacagCCACCAAAGCCAGAAGATCTTGGCCTGCATTTCTTTGCTAGTGGGACTACAagtacgtgctctgaaatcccacagtgctacagaaaaaatcacactccagct Alignment from Spaln_aa2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttgtattgttggcttactttccaatgtctgcccacagCCACCAAAGCCAGAAGATCTTGGCCTGCATTTCTTTGCTAGTGGGACTACAAgtacgtgctctgaaatcccacagtgctacagaaaaaatcacactccagct Alignment from Spaln_nt2Genome CCTCCGAAGCCAGAGGATCTGAGCGT-CATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttgtattgttggcttactttccaatgtctgcccacagCCACCAAAGCCAGAAGATCTTGGCCTGCATTTCTTT-GCTAGTGGGACTACAAgtacgtgctctgaaatcccacagtgctacagaaaaaatcacactccagct Alignment from Pairagon CCTCCGAAGCCAGAGGATC----------------TGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttgtattgttggcttactttccaatgtctgcccacagCCACCAAAGCCAGAAGATCTTGGCCTGCATTTCTTTG----------------CTAGTGGGACTACAAgtacgtgctctgaaatcccacagtgctacagaaaaaatcacactccagct Alignment from Exonerate_protein2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttgtattgttggcttactttccaatgtctgcccacagCCACCAAAGCCAGAAGATCTTGGCCTGCATTTCTTTGCTAGTGGGACTACAAgtacgtgctctgaaatcccacagtgctacagaaaaaatcacactccagct Alignment from Exonerate_coding2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttgtattgttggcttactttccaatgtctgcccacagCCACCAAAGCCAGAAGATCTTGGCCTGCATTTCTTTGCTAGTGGGACTACAAgtacgtgctctgaaatcccacagtgctacagaaaaaatcacactccagct Alignment from GeneWise CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttgtattgttggcttactttccaatgtctgcccacagCCACCAAAGCCAGAAGATCTTGGCCTGCATTTCTTTGCTAGTGGGACTACAAgtacgtgctctgaaatcccacagtgctacagaaaaaatcacactccagct #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAA-GATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatatcttgtttttctgtgggacaggcCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAACGACGTAG-GGAGATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtgagtgagatatacagtaccaacttaggacagatgggagaactgtctaa Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatatcttgtttttctgtgggacaggcCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAACGACGTAGGGAGATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtgagtgagatatacagtaccaacttaggacagatgggagaactgtctaa Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatatcttgtttttctgtgggacagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAACGACGTAGGGAGATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtgagtgagatatacagtaccaacttaggacagatgggagaactgtctaa Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatatcttgtttttctgtgggacagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAACGACGTAGGGAGATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtgagtgagatatacagtaccaacttaggacagatgggagaactgtctaa Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCT-----------GGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatatcttgtttttctgtgggacagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAACGACGTAGG-----------GAGATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtgagtgagatatacagtaccaacttaggacagatgggagaactgtctaa Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatatcttgtttttctgtgggacagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAACGACGTAGGGAGATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtgagtgagatatacagtaccaacttaggacagatgggagaactgtctaa Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatatcttgtttttctgtgggacagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAACGACGTAGGGAGATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtgagtgagatatacagtaccaacttaggacagatgggagaactgtctaa Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgggcttactctgcagttatatcttgtttttctgtgggacagGCCATGTTGGCACTCCAGTAGCCTCCAATTTTGTAAAGCTTGAACGACGTAGGGAGATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtgagtgagatatacagtaccaacttaggacagatgggagaactgtctaa #### Actn3_ID691_19 --> 0 - 0 Original Alignment TGACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtgaggggcttgacatgattatctttgttgttgtgttttgtagAAGCGGAACAGGCATGATGGAGC-CGATGACTTTCGAGCTTGTCTCATCTCCATGGGTTATGATCTAgtattcggattagagtcctatgacaccattagcttatttatgtctttgtc Alignment from CESAR TGACCGG AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtaatcggcttgacatgattatctttgttgttgtgttttgtagAAGCGGAACAGGCATGATGGAGC-CGATGACTTTCGAGCTTGTCTCATCTCCATGGGTTATGATCTAgtattcggattagagtcctatgacaccattagcttatttatgtctttgtc Alignment from Spaln_aa2Genome TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtgaggggcttgacatgattatctttgttgttgtgttttgtagAAGCGGAACAGGCATGATGGAGCCGATGACTTTCGAGCTTGTCTCATCTCCATGGGTTATGATCTAgtattcggattagagtcctatgacaccattagcttatttatgtctttgtc Alignment from Spaln_nt2Genome TGACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtgaggggcttgacatgattatctttgttgttgtgttttgtagAAGCGGAACAGGCATGATGGAG-CCGATGACTTTCGAGCTTGTCTCATCTCCATGGGTTATGATCTAgtattcggattagagtcctatgacaccattagcttatttatgtctttgtc Alignment from Pairagon TGACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtgaggggcttgacatgattatctttgttgttgtgttttgtagAAGCGGAACAGGCATGATGGAG-CCGATGACTTTCGAGCTTGTCTCATCTCCATGGGTTATGATCTAgtattcggattagagtcctatgacaccattagcttatttatgtctttgtc Alignment from Exonerate_protein2genome TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtgaggggcttgacatgattatctttgttgttgtgttttgtagAAGCGGAACAGGCATGATGGAGCCGATGACTTTCGAGCTTGTCTCATCTCCATGGGTTATGATCTAgtattcggattagagtcctatgacaccattagcttatttatgtctttgtc Alignment from Exonerate_coding2genome tgaccgggtgaggggcttgacatgattatctttgttgttgtgttttgtagaagcggaacaggcatgatggagccgatgactttcgagcttgtctcatctccatgggttatgatctagtattcggattagagtcctatgacaccattagcttatttatgtctttgtc Alignment from GeneWise TGACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG TGACCGGgtgaggggcttgacatgattatctttgttgttgtgttttgtagAAGCGGAACAGGCATGATGGAGCCGATGACTTTCGAGCTTGTCTCATCTCCATGGGTTATGATCTAgtattcggattagagtcctatgacaccattagcttatttatgtctttgtc #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggcaaaatggtgagtcttgggactctactcccagatccttcccttctagGAAGTAGGACGACTAGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGTCAGCAGGAACAGAATATCCATCAATT-CAAGAGCAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacctaatggccaccagatagttgcagtttatgtcagctgactca Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggcaaaatggtgagtcttgggactctactcccagatccttcccttctagGAAGTAGGACGACTAGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGTCAGCAGGAACAGAATATCCATCAATTCAAGAGCAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacctaatggccaccagatagttgcagtttatgtcagctgactca Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggcaaaatggtgagtcttgggactctactcccagatccttcccttctagGAAGTAGGACGACTAGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGTCAGCAGGAACAGAATATCCATCAATTCAAGAGCAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacctaatggccaccagatagttgcagtttatgtcagctgactca Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggcaaaatggtgagtcttgggactctactcccagatccttcccttctagGAAGTAGGACGACTAGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGTCAGCAGGAACAGAATATCCATCAATTCAAGAGCAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacctaatggccaccagatagttgcagtttatgtcagctgactca Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACAT-CATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggcaaaatggtgagtcttgggactctactcccagatccttcccttctagGAAGTAGGACGACTAGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGTCAGCAGGAACAGAATATCCATCAATT-CAAGAGCAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacctaatggccaccagatagttgcagtttatgtcagctgactca Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggcaaaatggtgagtcttgggactctactcccagatccttcccttctagGAAGTAGGACGACTAGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGTCAGCAGGAACAGAATATCCATCAATTCAAGAGCAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacctaatggccaccagatagttgcagtttatgtcagctgactca Alignment from Exonerate_coding2genome gggcaaaatggtgagtcttgggactctactcccagatccttcccttctaggaagtaggacgactagcagcagggctagctggctctctggaggagcagatggcaggtctgcgtcagcaggaacagaatatccatcaattcaagagcaacatcgactggctagagggtgaccaccagttgctgcaggagagcctagtttttgacaacaagcacacagtctacagcatggaggtaagtacctaatggccaccagatagttgcagtttatgtcagctgactca Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggcaaaatggtgagtcttgggactctactcccagatccttcccttctagGAAGTAGGACGACTAGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGTCAGCAGGAACAGAATATCCATCAATTCAAGAGCAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacctaatggccaccagatagttgcagtttatgtcagctgactca #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTAC-ATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACCATTA-CCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACCATTACCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACCATTACCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACCATTACCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACCATTACCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACCATTACCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACAGTCAGAAAGCTG catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACCATTACCTCAGTATGAGGGACATCAATAATAAGTGGGATACTGTGAGCTACCTGgctttatgctaagtgagagttctattgtggcaatacta Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACCATTACCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCC-GCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTA------------AACCATGTAGCTGAATCTAGCATG------------CAG---CTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTCGCCT-CATGCCCTCTGAAGGCAAC------TCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTA------------AACCATGTAGCTGAATCTAGCATG---------------CAGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTCGCCTCATGCCCTCTGAAGGCAAC------TCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTA------------AACCATGTAGCTGAATCTAGCATG---------------CAGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTCGCCTCATGCCCTCTGAAGGCAAC------TCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTT------------AAACCATGTAGCTGAATCTAGCATG---------------CAGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTCGCCTCATGCCCTCTGAAGGCAACTCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCAC--------------------------TGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTAAACCATGTAGCTGAATCTAGCATGC-----------------------------------------------------AGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTCGCCTCATGCCCTCTGAAGGCAA------CTCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaaTGTTGTCTCCCTTTGGTGCAGCTGTTAGAGTGGAATTGCCGCACCTTAAACCATGTAGCTGAATCTAGCATGCAG------CTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTCGCCTCATGCCCTCTGAAGGCAACTCAGTAAGGaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaaTGTTGTCTCCCTTTGGTGCAGCTGTTAGAGTGGAATTGCCGCACCTTAAACCATGTAGCTGAATCTAGCATGCAG------CTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTCGCCTCATGCCCTCTGAAGGCAACTCAGTAAGGaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTA------------AACCATGTAGCTGAATCTAGCATG---------------CAGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTCGCCTCATGCCCTCTGAAGGCAAC------TCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct #### Actn3_ID701_9 --> 0 - 0 Original Alignment GCAGAGACTGCTGCCAACAGGATCTGC-AAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG aggtccctcctagctttctgggtatagtcccttccccactgggcctccagGCAGAGACTGCTGCCAACAGAATCTGCCAAGGTAT-ACCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaagtttacaccatcgcccaagaaatccctcccagtacttcttcagtgt Alignment from CESAR GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG aggtccctcctagctttctgggtatagtcccttccccactgggcctccagGCAGAGACTGCTGCCAACAGAATCTGCCAAGGTATACCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaagtttacaccatcgcccaagaaatccctcccagtacttcttcagtgt Alignment from Spaln_aa2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG aggtccctcctagctttctgggtatagtcccttccccactgggcctccagGCAGAGACTGCTGCCAACAGAATCTGCCAAGGTATACCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaagtttacaccatcgcccaagaaatccctcccagtacttcttcagtgt Alignment from Spaln_nt2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG aggtccctcctagctttctgggtatagtcccttccccactgggcctccagGCAGAGACTGCTGCCAACAGAATCTGCCAAGGTATACCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaagtttacaccatcgcccaagaaatccctcccagtacttcttcagtgt Alignment from Pairagon GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG aggtccctcctagctttctgggtatagtcccttccccactgggcctccagGCAGAGACTGCTGCCAACAGAATCTGCCAAGGTATACCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaagtttacaccatcgcccaagaaatccctcccagtacttcttcagtgt Alignment from Exonerate_protein2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG aggtccctcctagctttctgggtatagtcccttccccactgggcctccagGCAGAGACTGCTGCCAACAGAATCTGCCAAGGTATACCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaagtttacaccatcgcccaagaaatccctcccagtacttcttcagtgt Alignment from Exonerate_coding2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG aggtccctcctagctttctgggtatagtcccttccccactgggcctccagGCAGAGACTGCTGCCAACAGAATCTGCCAAGGTATACCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaagtttacaccatcgcccaagaaatccctcccagtacttcttcagtgt Alignment from GeneWise GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG aggtccctcctagctttctgggtatagtcccttccccactgggcctccagGCAGAGACTGCTGCCAACAGAATCTGCCAAGGTATACCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaagtttacaccatcgcccaagaaatccctcccagtacttcttcagtgt #### Actn3_ID702_8 --> 2 - 0 Original Alignment atATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACC-TATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tccatcagtgcccatggaatcctccatcatggttttcctttcccttctagatATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTCTACCTTT-CTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtgagagagctgttgtaaacatgacatcatacagtatgtcctggcagttg Alignment from CESAR atATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tccatcagtgcccatggaatcctccatcatggttttcctttcccttctagatATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTCTACCTTTCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtgagagagctgttgtaaacatgacatcatacagtatgtcctggcagttg Alignment from Spaln_aa2Genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tccatcagtgcccatggaatcctccatcatggttttcctttcccttctagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTCTACCTTTCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtgagagagctgttgtaaacatgacatcatacagtatgtcctggcagttg Alignment from Spaln_nt2Genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tccatcagtgcccatggaatcctccatcatggttttcctttcccttctagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTCTACCTTTCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtgagagagctgttgtaaacatgacatcatacagtatgtcctggcagttg Alignment from Pairagon ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tccatcagtgcccatggaatcctccatcatggttttcctttcccttctagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTCTACCTTTCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtgagagagctgttgtaaacatgacatcatacagtatgtcctggcagttg Alignment from Exonerate_protein2genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tccatcagtgcccatggaatcctccatcatggttttcctttcccttctagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTCTACCTTTCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtgagagagctgttgtaaacatgacatcatacagtatgtcctggcagttg Alignment from Exonerate_coding2genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tccatcagtgcccatggaatcctccatcatggttttcctttcccttctagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTCTACCTTTCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtgagagagctgttgtaaacatgacatcatacagtatgtcctggcagttg Alignment from GeneWise ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tccatcagtgcccatggaatcctccatcatggttttcctttcccttctagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTCTACCTTTCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtgagagagctgttgtaaacatgacatcatacagtatgtcctggcagttg #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-AACGTACAGAACTTCCATACCag atgccagatgccgagccaagccatgtcagacactcatgttttctttgtagagGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAAATAGCTCCATACCGTAATGTTCAATGTAC-GAACTTCCATACTaggtaacaatcctgcatatcgtagttaggatctataaaagtgaagggtgcca Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag atgccagatgccgagccaagccatgtcagacactcatgttttctttgtagagGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAAATAGCTCCATACCGTAATGTTCAATGTACGAACTTCCATACTaggtaacaatcctgcatatcgtagttaggatctataaaagtgaagggtgcca Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgccgagccaagccatgtcagacactcatgttttctttgtagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAAATAGCTCCATACCGTAATGTTCAATGTACGAACTTCCATACTAGgtaacaatcctgcatatcgtagttaggatctataaaagtgaagggtgcca Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGT-CAACGTACAGAACTTCCATACCAG atgccagatgccgagccaagccatgtcagacactcatgttttctttgtagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAAATAGCTCCATACCGTAATGTTCAATGTAC-GAACTTCCATACTAGgtaacaatcctgcatatcgtagttaggatctataaaagtgaagggtgcca Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATG-TCAACGTACAGAACTTCCATACCAG atgccagatgccgagccaagccatgtcagacactcatgttttctttgtagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAAATAGCTCCATACCGTAATGTTCAATGTAC-GAACTTCCATACTAGgtaacaatcctgcatatcgtagttaggatctataaaagtgaagggtgcca Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgccgagccaagccatgtcagacactcatgttttctttgtagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAAATAGCTCCATACCGTAATGTTCAATGTACGAACTTCCATACTAGgtaacaatcctgcatatcgtagttaggatctataaaagtgaagggtgcca Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgccgagccaagccatgtcagacactcatgttttctttgtagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAAATAGCTCCATACCGTAATGTTCAATGTACGAACTTCCATACTAGgtaacaatcctgcatatcgtagttaggatctataaaagtgaagggtgcca Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgccagatgccgagccaagccatgtcagacactcatgttttctttgtagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAAATAGCTCCATACCGTAATGTTCAATGTACGAACTTCCATACTAGgtaacaatcctgcatatcgtagttaggatctataaaagtgaagggtgcca #### Actr1a_ID9877_3 --> 1 - 0 Original Alignment tGTGGGCAGACCCAAACATGTT-CGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctcctacacgacatgaagattccatgtgtgttctctcttgtagtGTAGGAAGGCCCAAACATGTTCCATGCAA-GGCAGGGGCCCTGGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtaaagtttgtcctacaagaaaaagttggtataaggagctccccccacat Alignment from CESAR tGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctcctacacgacatgaagattccatgtgtgttctctcttgtagtGTAGGAAGGCCCAAACATGTTCCATGCAAGGCAGGGGCCCTGGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtaaagtttgtcctacaagaaaaagttggtataaggagctccccccacat Alignment from Spaln_aa2Genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctcctacacgacatgaagattccatgtgtgttctctcttgtagTGTAGGAAGGCCCAAACATGTTCCATGCAAGGCAGGGGCCCTGGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtaaagtttgtcctacaagaaaaagttggtataaggagctccccccacat Alignment from Spaln_nt2Genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctcctacacgacatgaagattccatgtgtgttctctcttgtagTGTAGGAAGGCCCAAACATGTTCCATGCAAGGCAGGGGCCCTGGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtaaagtttgtcctacaagaaaaagttggtataaggagctccccccacat Alignment from Pairagon TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctcctacacgacatgaagattccatgtgtgttctctcttgtagTGTAGGAAGGCCCAAACATGTTCCATGCAAGGCAGGGGCCCTGGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtaaagtttgtcctacaagaaaaagttggtataaggagctccccccacat Alignment from Exonerate_protein2genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctcctacacgacatgaagattccatgtgtgttctctcttgtagTGTAGGAAGGCCCAAACATGTTCCATGCAAGGCAGGGGCCCTGGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtaaagtttgtcctacaagaaaaagttggtataaggagctccccccacat Alignment from Exonerate_coding2genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctcctacacgacatgaagattccatgtgtgttctctcttgtagTGTAGGAAGGCCCAAACATGTTCCATGCAAGGCAGGGGCCCTGGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtaaagtttgtcctacaagaaaaagttggtataaggagctccccccacat Alignment from GeneWise TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctcctacacgacatgaagattccatgtgtgttctctcttgtagTGTAGGAAGGCCCAAACATGTTCCATGCAAGGCAGGGGCCCTGGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtaaagtttgtcctacaagaaaaagttggtataaggagctccccccacat #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAG-GGCGTGCTGCGG---------GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ctggtagaagcaattttcaaggctagccctctctacgttggcctgttcaggcCTCGAGATGGGCCCACAGCCCCAACGGGG-TCTGTGGCCTGATCTATCTGATCTATTCTCACAGTTAAGAGCTTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAATCAAggtgagccattcctagtattttgtcaggcaggtcatgttgatgggagtgtt Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG---------GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ctggtagaagcaattttcaaggctagccctctctacgttggcctgttcaggcCTCGAGATGGGCCCACAGCCCCAACGGGGTCTGTGGCCTGATCTATCTGATCTATTCTCACAGTTAAGAGCTTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAATCAAggtgagccattcctagtattttgtcaggcaggtcatgttgatgggagtgtt Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG---------GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagaagcaattttcaaggctagccctctctacgttggcctgttcagGCCTCGAGATGGGCCCACAGCCCCAACGGGGTCTGTGGCCTGATCTATCTGATCTATTCTCACAGTTAAGAGCTTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAATCAAGgtgagccattcctagtattttgtcaggcaggtcatgttgatgggagtgtt Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGT---------TCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagaagcaattttcaaggctagccctctctacgttggcctgttcagGCCTCGAGATGGGCCCACAGCCCCAACGGGGTCTGTGGCCTGATCTATCTGATCTATTCTCACAGTTAAGAGCTTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAATCAAGgtgagccattcctagtattttgtcaggcaggtcatgttgatgggagtgtt Alignment from Pairagon ----------------------------------------------------CTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGG------------------CCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG CTGGTAGAAGCAATTTTCAAGGCTAGCCCTCTCTACGTTGGCCTGTTCAGGCCTCGAGATGGGCCCACAGCCCCA---------ACGGGGTCTGTGGCCTGATCTATCTGATCTATTCTCACAGTTAAGAGCTTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAATCAAGgtgagccattcctagtattttgtcaggcaggtcatgttgatgggagtgtt Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTG---------CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagaagcaattttcaaggctagccctctctacgttggcctgttcagGCCTCGAGATGGGCCCACAGCCCCAACGGGGTCTGTGGCCTGATCTATCTGATCTATTCTCACAGTTAAGAGCTTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAATCAAGgtgagccattcctagtattttgtcaggcaggtcatgttgatgggagtgtt Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTG---------CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagaagcaattttcaaggctagccctctctacgttggcctgttcagGCCTCGAGATGGGCCCACAGCCCCAACGGGGTCTGTGGCCTGATCTATCTGATCTATTCTCACAGTTAAGAGCTTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAATCAAGgtgagccattcctagtattttgtcaggcaggtcatgttgatgggagtgtt Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTG---------CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAA- ctggtagaagcaattttcaaggctagccctctctacgttggcctgttcagGCCTCGAGATGGGCCCACAGCCCCAACGGGGTCTGTGGCCTGATCTATCTGATCTATTCTCACAGTTAAGAGCTTTAGTGGCATCAATTCTTGACTTCATTGAGCTCTTGAATCAAGgtgagccattcctagtattttgtcaggcaggtcatgttgatgggagtgtt #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGC-ACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagtgttatctggaacaatagtgacaagtgtgtcccctacccttctgcaggtATGGACTCAGACTCTGCAGCATTTGAGATGGATATTTACTGGAACTTGGGAAGTGTAGACTTCTCCTGCCACTG-TGATGGTGATCTAGCCAGCATGGTGCACCCACAAATTCAAgtgtgcatactactggtaatcaggtgtgtcccaagcagtaatgtcacaac Alignment from CESAR gcATGGACTTA------CCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagtgttatctggaacaatagtgacaagtgtgtcccctacccttctgcaggtATGGACTCAGACTCTGCAGCATTTGAGATGGATATTTACTGGAACTTGGGAAGTGTAGACTTCTCCTGCCACTGTGATGGTGATCTAGCCAGCATGGTGCACCCACAAATTCAAgtgtgcatactactggtaatcaggtgtgtcccaagcagtaatgtcacaac Alignment from Spaln_aa2Genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagtgttatctggaacaatagtgacaagtgtgtcccctacccttctgcagGTATGGACTCAGACTCTGCAGCATTTGAGATGGATATTTACTGGAACTTGGGAAGTGTAGACTTCTCCTGCCACTGTGATGGTGATCTAGCCAGCATGGTGCACCCACAAATTCAAgtgtgcatactactggtaatcaggtgtgtcccaagcagtaatgtcacaac Alignment from Spaln_nt2Genome GCATGGACTTACCC------GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGC-ACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagtgttatctggaacaatagtgacaagtgtgtcccctacccttctgcagGTATGGACTCAGACTCTGCAGCATTTGAGATGGATATTTACTGGAACTTGGGAAGTGTAGACTTCTCCTGCCACTG-TGATGGTGATCTAGCCAGCATGGTGCACCCACAAATTCAAgtgtgcatactactggtaatcaggtgtgtcccaagcagtaatgtcacaac Alignment from Pairagon GCATGGACTTA------CCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCA-----GATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagtgttatctggaacaatagtgacaagtgtgtcccctacccttctgcagGTATGGACTCAGACTCTGCAGCATTTGAGATGGATATTTACTGGAACTTGGGAAGTGTAGACTTCTC-----CTGCCACTGTGATGGTGATCTAGCCAGCATGGTGCACCCACAAATTCAAgtgtgcatactactggtaatcaggtgtgtcccaagcagtaatgtcacaac Alignment from Exonerate_protein2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagtgttatctggaacaatagtgacaagtgtgtcccctacccttctgcagGTATGGACTCAGACTCTGCAGCATTTGAGATGGATATTTACTGGAACTTGGGAAGTGTAGACTTCTCCTGCCACTGTGATGGTGATCTAGCCAGCATGGTGCACCCACAAATTCAAgtgtgcatactactggtaatcaggtgtgtcccaagcagtaatgtcacaac Alignment from Exonerate_coding2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagtgttatctggaacaatagtgacaagtgtgtcccctacccttctgcagGTATGGACTCAGACTCTGCAGCATTTGAGATGGATATTTACTGGAACTTGGGAAGTGTAGACTTCTCCTGCCACTGTGATGGTGATCTAGCCAGCATGGTGCACCCACAAATTCAAgtgtgcatactactggtaatcaggtgtgtcccaagcagtaatgtcacaac Alignment from GeneWise -----GGCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagtgttatctggaacaatagtgacaagtgtgtcccctacccttctgcagGTATGGACTCAGACTCTGCAGCATTTGAGATGGATATTTACTGGAACTTGGGAAGTGTAGACTTCTCCTGCCACTGTGATGGTGATCTAGCCAGCATGGTGCACCCACAAATTCAAgtgtgcatactactggtaatcaggtgtgtcccaagcagtaatgtcacaac #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAG-GAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGCGAGGACA-AAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAG-GAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGCGAGGACA-AAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATT-GACCGCATGACGTTGACGATG ttctgatacacctccttttaacccaccttatgtgttctattctttcccagcCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATCCGACCGCA-GACACTTACTATGgtacgtctaatagaagcattgagaactatgtcaagctgagtcattgatcc Alignment from CESAR aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttaacccaccttatgtgttctattctttcccagcCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATCCGACCGCAGACACTTACTATGgtacgtctaatagaagcattgagaactatgtcaagctgagtcattgatcc Alignment from Spaln_aa2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttaacccaccttatgtgttctattctttcccagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATCCGACCGCAGACACTTACTATGgtacgtctaatagaagcattgagaactatgtcaagctgagtcattgatcc Alignment from Spaln_nt2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATT-GACCGCATGACGTTGACGATG ttctgatacacctccttttaacccaccttatgtgttctattctttcccagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATCCGACCGCA-GACACTTACTATGgtacgtctaatagaagcattgagaactatgtcaagctgagtcattgatcc Alignment from Pairagon ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGAT-TGACCGCATGACGTTGACGATG ttctgatacacctccttttaacccaccttatgtgttctattctttcccagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATCCGACCGCA-GACACTTACTATGgtacgtctaatagaagcattgagaactatgtcaagctgagtcattgatcc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttaacccaccttatgtgttctattctttcccagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATCCGACCGCAGACACTTACTATGgtacgtctaatagaagcattgagaactatgtcaagctgagtcattgatcc Alignment from Exonerate_coding2genome ttctgatacacctccttttaacccaccttatgtgttctattctttcccagccacagtcacttccagcagcacaagacaaaagatacacatgacatccgaccgcagacacttactatggtacgtctaatagaagcattgagaactatgtcaagctgagtcattgatcc Alignment from GeneWise ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttaacccaccttatgtgttctattctttcccagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATCCGACCGCAGACACTTACTATGgtacgtctaatagaagcattgagaactatgtcaagctgagtcattgatcc #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTA-CAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtaagaacctacagactcacttcaccttgcctgtcctctctttcaggGGCACACATGGGTACATAGCTCCCAAGGTACTTCCAAAAAG-TATAGCCTATGATAGCAGCGCCGACTGGTTCTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAgggtagccccaggggggagcccttacggctggctggcagaggcaatggcctg Alignment from CESAR GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtaggaacctacagactcacttcaccttgcctgtcctctctttcaggGGCACACATGGGTACATAGCTCCCAAGGTACTTCCAAAAAGTATAGCCTATGATAGCAGCGCCGACTGGTTCTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAgggtagccccaggggggagcccttacggctggctggcagaggcaatggcctg Alignment from Spaln_aa2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagaacctacagactcacttcaccttgcctgtcctctctttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCCAAAAAGTATAGCCTATGATAGCAGCGCCGACTGGTTCTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtagccccaggggggagcccttacggctggctggcagaggcaatggcctg Alignment from Spaln_nt2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagaacctacagactcacttcaccttgcctgtcctctctttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCCAAAAAGTATAGCCTATGATAGCAGCGCCGACTGGTTCTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtagccccaggggggagcccttacggctggctggcagaggcaatggcctg Alignment from Pairagon GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagaacctacagactcacttcaccttgcctgtcctctctttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCCAAAAAGTATAGCCTATGATAGCAGCGCCGACTGGTTCTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtagccccaggggggagcccttacggctggctggcagaggcaatggcctg Alignment from Exonerate_protein2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagaacctacagactcacttcaccttgcctgtcctctctttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCCAAAAAGTATAGCCTATGATAGCAGCGCCGACTGGTTCTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtagccccaggggggagcccttacggctggctggcagaggcaatggcctg Alignment from Exonerate_coding2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagaacctacagactcacttcaccttgcctgtcctctctttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCCAAAAAGTATAGCCTATGATAGCAGCGCCGACTGGTTCTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtagccccaggggggagcccttacggctggctggcagaggcaatggcctg Alignment from GeneWise GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtaagaacctacagactcacttcaccttgcctgtcctctctttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCCAAAAAGTATAGCCTATGATAGCAGCGCCGACTGGTTCTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtagccccaggggggagcccttacggctggctggcagaggcaatggcctg #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAACATGGCCATGTG-AGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTAGAA---CATGGCCATGTGCAGAATTTCTG-TTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGgtgtaggaacctacagactcacttcaatgggaccttgtcccctggcaggGGC Alignment from CESAR CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGCAGAATTTCTGTTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGgtgtaggaacctacagactcacttcaccttgcctgtcctctctttcaggGGC Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGCAGAATTTCTGTTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcaatgggaccttgtcccctggcagGGGC Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTG-AGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCT---AGAACATGGCCATGTGCAGAATTTCTG-TTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcaatgggaccttgtcccctggcagGGGC Alignment from Pairagon CCAGCCAACATTCTCCTGGATGAACATGGCCATGTG---------------AGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGCAGAATTTCTGTTTTA---------------GCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcaatgggaccttgtcccctggcagGGGC Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGCAGAATTTCTGTTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcaatgggaccttgtcccctggcagGGGC Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGCAGAATTTCTGTTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcaatgggaccttgtcccctggcagGGGC Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGCAGAATTTCTGTTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcaatgggaccttgtcccctggcagGGGC #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATC-ATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacaggCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTCATGCTATCAC-TGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from CESAR gTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacaggCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTCATGCTATCACTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTCATGCTATCACTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGGA---CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGAT-CATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTCATGCTATCACT-GTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Pairagon GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGA-TCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTCATGCTATCACT-GTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTCATGCTATCACTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Exonerate_coding2genome CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCAT acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacaggcatgctaagagatgtttggaaaacaagaaacacattaagatgaaacaaggagagacactggccctgaatacgcggattcatgctatcactgtgagCACTGGTGTGAGTCAAGTGGTCAGGTAACCCCCACTCAGTTCGCCTTCTATAAGACA Alignment from GeneWise GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTCATGCTATCACTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGG-AAAGCAGACACAGGCAAGat acacaataaaagtagcaactctacatagaacacacttttcttccctccag---CCCATGAATGATTTTAGTGTACGTCAGATCATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCCAGG-TGATGTAGGCAAGatgtaagatgtagacaagtaaaggtgggtggtcaacaaagggcatctctgag Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat acacaataaaagtagcaactctacatagaacacacttttcttccctccag---CCCATGAATGATTTTAGTGTACGTCAGATCATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCCAGGTGATGTAGGCAAGatgtaagatgtagacaagtaaaggtgggtggtcaacaaagggcatctctgag Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT acacaataaaagtagcaactctacatagaacacacttttcttccctccagCCCATGAATGATTTT---AGTGTACGTCAGATCATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCCAGGTGATGTAGGCAAGATgtaagatgtagacaagtaaaggtgggtggtcaacaaagggcatctctgag Alignment from Spaln_nt2Genome ACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT acacaataaaagtagcaactctacatagaacacacttttcttccctccagCCCATGAATGATTTTAGTGTACGTCAGATCATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCCAGGTGATGTAGGCAAGATgtaagatgtagacaagtaaaggtgggtggtcaacaaagggcatctctgag Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT acacaataaaagtagcaactctacatagaacacacttttcttccctccagC---CCATGAATGATTTTAGTGTACGTCAGATCATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCCAGGTGATGTAGGCAAGATgtaagatgtagacaagtaaaggtgggtggtcaacaaagggcatctctgag Alignment from Exonerate_protein2genome CCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT acacaataaaagtagcaactctacatagaacacacttttcttccctccagcCCATGAATGATTTTAGTGTACGTCAGATCATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCCAGGTGATGTAGGCAAGATgtaagatgtagacaagtaaaggtgggtggtcaacaaagggcatctctgag Alignment from Exonerate_coding2genome acacaataaaagtagcaactctacatagaacacacttttcttccctccagcccatgaatgattttagtgtacgtcagatcattggacatggtggctttggtgaggtatatggttgccgcccaggtgatgtaggcaagatgtaagatgtagacaagtaaaggtgggtggtcaacaaagggcatctctgag Alignment from GeneWise -----------------------------------ACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT acacaataaaagtagCAACTCTACATAGAACACACTTTTCTTCCCTCCAGCCCATGAATGATTTTAGTGTACGTCAGATCATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCCAGGTGATGTAGGCAAGATgtaagatgtagacaagtaaaggtgggtggtcaacaaagggcatctctgag #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAG-GAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGCGATATTTGTC-GAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from CESAR CCATACATTGAG-GAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGCGATATTTGTCGAA-ACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGCGATATTTGTCGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Spaln_nt2Genome CCATACATTGAG-GAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGCGATATTTGTC-GAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Pairagon CCATACATTGAG-GAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGCGATATTTGTC-GAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGCGATATTTGTCGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Exonerate_coding2genome aaaccagggctagccagaatggtgcacccttttactgttactgttggcagccttacattgagcgatatttgtcgaaactccgaagggatttattccaaaagtttatagagaggtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from GeneWise CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGCGATATTTGTCGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCTACG-GAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttgttcttgttcatcacgagtgtctcctccttgcagCCCTTCTCCCAAAATGCTGCACGAGCATG-GCAGGCTCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAAgtgggcttaggatggttatcacggtattagacattggtaagaggttgttt Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttgttcttgttcatcacgagtgtctcctccttgcagCCCTTCTCCCAAAATGCTGCACGAGCATGGCAGGCTCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAAgtgggcttaggatggttatcacggtattagacattggtaagaggttgttt Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttgttcttgttcatcacgagtgtctcctccttgcagCCCTTCTCCCAAAATGCTGCACGAGCATGGCAGGCTCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAAgtgggcttaggatggttatcacggtattagacattggtaagaggttgttt Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACG-GAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttgttcttgttcatcacgagtgtctcctccttgcagCCCTTCTCCCAAAATGCTGCACGAGCATG-GCAGGCTCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAAgtgggcttaggatggttatcacggtattagacattggtaagaggttgttt Alignment from Pairagon CCCTTTTCAAAGAATGCTACG-GAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttgttcttgttcatcacgagtgtctcctccttgcagCCCTTCTCCCAAAATGCTGCACGAGCATG-GCAGGCTCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAAgtgggcttaggatggttatcacggtattagacattggtaagaggttgttt Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttgttcttgttcatcacgagtgtctcctccttgcagCCCTTCTCCCAAAATGCTGCACGAGCATGGCAGGCTCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAAgtgggcttaggatggttatcacggtattagacattggtaagaggttgttt Alignment from Exonerate_coding2genome acattccattttgcttgttcttgttcatcacgagtgtctcctccttgcagcccttctcccaaaatgctgcacgagcatggcaggctcaccttgtgaagaagcaggtccctccagatctgtttcaagtgggcttaggatggttatcacggtattagacattggtaagaggttgttt Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttgttcttgttcatcacgagtgtctcctccttgcagCCCTTCTCCCAAAATGCTGCACGAGCATGGCAGGCTCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAAgtgggcttaggatggttatcacggtattagacattggtaagaggttgttt #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATG-GTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tttatttagtacagacaagccagctttgccttctccttgactgtgagcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCGCTCTCTGTGATGCGTTATTGGGA-AGGAACTGTCCTGCAGAAAGCTAAGgtgagttaccttattacaaactttgttgagccactaatccacaaaatgtc Alignment from CESAR CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tttatttagtacagacaagccagctttgccttctccttgactgtgagcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCGCTCTCTGTGATGCGTTATTGGGAAGGAACTGTCCTGCAGAAAGCTAAGgtgagttaccttattacaaactttgttgagccactaatccacaaaatgtc Alignment from Spaln_aa2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tttatttagtacagacaagccagctttgccttctccttgactgtgagcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTCCACCAGCT---ACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCGCTCTCTGTGATGCGTTATTGGGAAGGAACTGTCCTGCAGAAAGCTAAGgtgagttaccttattacaaactttgttgagccactaatccacaaaatgtc Alignment from Spaln_nt2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tttatttagtacagacaagccagctttgccttctccttgactgtgagcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTCCACCAG---CTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCGCTCTCTGTGATGCGTTATTGGGAAGGAACTGTCCTGCAGAAAGCTAAGgtgagttaccttattacaaactttgttgagccactaatccacaaaatgtc Alignment from Pairagon CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCAT---------GGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tttatttagtacagacaagccagctttgccttctccttgactgtgagcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTCCACCAG---CTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCGCTCTCTGTGATGCGTTATTGGG---------AAGGAACTGTCCTGCAGAAAGCTAAGgtgagttaccttattacaaactttgttgagccactaatccacaaaatgtc Alignment from Exonerate_protein2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tttatttagtacagacaagccagctttgccttctccttgactgtgagcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCGCTCTCTGTGATGCGTTATTGGGAAGGAACTGTCCTGCAGAAAGCTAAGgtgagttaccttattacaaactttgttgagccactaatccacaaaatgtc Alignment from Exonerate_coding2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tttatttagtacagacaagccagctttgccttctccttgactgtgagcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCGCTCTCTGTGATGCGTTATTGGGAAGGAACTGTCCTGCAGAAAGCTAAGgtgagttaccttattacaaactttgttgagccactaatccacaaaatgtc Alignment from GeneWise CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tttatttagtacagacaagccagctttgccttctccttgactgtgagcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCGCTCTCTGTGATGCGTTATTGGGAAGGAACTGTCCTGCAGAAAGCTAAGgtgagttaccttattacaaactttgttgagccactaatccacaaaatgtc #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATC-ACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gctgtcttcactgcagctgagactgaccccctctgtgctctcctctgcagGAGCAGGCTGGCTCATCAGACTGGGTCCAGTTAGACCTGCAGATCCACACCAC-GCTACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtgagtgtcatgcccaatacatgcccaatacaactcaactcagacttccc Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gctgtcttcactgcagctgagactgaccccctctgtgctctcctctgcagGAGCAGGCTGGCTCATCAGACTGGGTCCAGTTAGACCTGCAGATCCACACCACGCTACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtgagtgtcatgcccaatacatgcccaatacaactcaactcagacttccc Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgtcttcactgcagctgagactgaccccctctgtgctctcctctgcagGAGCAGGCTGGCTCATCAGACTGGGTCCAGTTAGACCTGCAGATCCACACCACGCTACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgagtgtcatgcccaatacatgcccaatacaactcaactcagacttccc Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgtcttcactgcagctgagactgaccccctctgtgctctcctctgcagGAGCAGGCTGGCTCATCAGACTGGGTCCAGTTAGACCTGCAGATCCACACCACGCTACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgagtgtcatgcccaatacatgcccaatacaactcaactcagacttccc Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGAT-CACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgtcttcactgcagctgagactgaccccctctgtgctctcctctgcagGAGCAGGCTGGCTCATCAGACTGGGTCCAGTTAGACCTGCAGATCCACACCAC-GCTACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgagtgtcatgcccaatacatgcccaatacaactcaactcagacttccc Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgtcttcactgcagctgagactgaccccctctgtgctctcctctgcagGAGCAGGCTGGCTCATCAGACTGGGTCCAGTTAGACCTGCAGATCCACACCACGCTACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgagtgtcatgcccaatacatgcccaatacaactcaactcagacttccc Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgtcttcactgcagctgagactgaccccctctgtgctctcctctgcagGAGCAGGCTGGCTCATCAGACTGGGTCCAGTTAGACCTGCAGATCCACACCACGCTACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgagtgtcatgcccaatacatgcccaatacaactcaactcagacttccc Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgtcttcactgcagctgagactgaccccctctgtgctctcctctgcagGAGCAGGCTGGCTCATCAGACTGGGTCCAGTTAGACCTGCAGATCCACACCACGCTACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgagtgtcatgcccaatacatgcccaatacaactcaactcagacttccc #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTG-GACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaaactgagtctgtcttttattgtcctttcttcacagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGCGACT-GGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgagacctgttggtgtactgtagctgcccccattcagaccctacccttg Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaaactgagtctgtcttttattgtcctttcttcacagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGCGACTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgagacctgttggtgtactgtagctgcccccattcagaccctacccttg Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaaactgagtctgtcttttattgtcctttcttcacagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGCGACTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgagacctgttggtgtactgtagctgcccccattcagaccctacccttg Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaaactgagtctgtcttttattgtcctttcttcacagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGCGACTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgagacctgttggtgtactgtagctgcccccattcagaccctacccttg Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaaactgagtctgtcttttattgtcctttcttcacagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGCGACTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgagacctgttggtgtactgtagctgcccccattcagaccctacccttg Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaaactgagtctgtcttttattgtcctttcttcacagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGCGACTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgagacctgttggtgtactgtagctgcccccattcagaccctacccttg Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaaactgagtctgtcttttattgtcctttcttcacagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGCGACTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgagacctgttggtgtactgtagctgcccccattcagaccctacccttg Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaaactgagtctgtcttttattgtcctttcttcacagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGCGACTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgagacctgttggtgtactgtagctgcccccattcagaccctacccttg #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTG-GAACACAAATTTGACTATATCTTCTTCACAg TGATCAGgtaagattgattgtgcaagtttatctatttgctgtgttcttagAGCTGTTTTGCTGTGATGCTGGGAAGTCCTGATGAGACACGGCAACTGCTGCGAACACA-GTTTGATTATATCTTCTTTATTggtacctacgggttcaaggcctgccacagagcaacacacgaggtgcttcta Alignment from CESAR GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg TGATCAGgtacttttgattgtgcaagtttatctatttgctgtgttcttagAGCTGTTTTGCTGTGATGCTGGGAAGTCCTGATGAGACACGGCAACTGCTGCGAACACAGTTTGATTATATCTTCTTTATTggtacctacgggttcaaggcctgccacagagcaacacacgaggtgcttcta Alignment from Spaln_aa2Genome GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG TGATCAGgtaagattgattgtgcaagtttatctatttgctgtgttcttagAGCTGTTTTGCTGTGATGCTGGGAAGTCCTGATGAGACACGGCAACTGCTGCGAACACAGTTTGATTATATCTTCTTTATTGgtacctacgggttcaaggcctgccacagagcaacacacgaggtgcttcta Alignment from Spaln_nt2Genome GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG TGATCAGgtaagattgattgtgcaagtttatctatttgctgtgttcttagAGCTGTTTTGCTGTGATGCTGGGAAGTCCTGATGAGACACGGCAACTGCTGCGAACACAGTTTGATTATATCTTCTTTATTGgtacctacgggttcaaggcctgccacagagcaacacacgaggtgcttcta Alignment from Pairagon GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTG-GAACACAAATTTGACTATATCTTCTTCACAG TGATCAGgtaagattgattgtgcaagtttatctatttgctgtgttcttagAGCTGTTTTGCTGTGATGCTGGGAAGTCCTGATGAGACACGGCAACTGCTGCGAACAC-AGTTTGATTATATCTTCTTTATTGgtacctacgggttcaaggcctgccacagagcaacacacgaggtgcttcta Alignment from Exonerate_protein2genome GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG TGATCAGgtaagattgattgtgcaagtttatctatttgctgtgttcttagAGCTGTTTTGCTGTGATGCTGGGAAGTCCTGATGAGACACGGCAACTGCTGCGAACACAGTTTGATTATATCTTCTTTATTGgtacctacgggttcaaggcctgccacagagcaacacacgaggtgcttcta Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG tgatcaggtaagattgattgtgcaagtttatctatttgctgtgttcttagAGCTGTTTTGCTGTGATGCTGGGAAGTCCTGATGAGACACGGCAACTGCTGCGAACACAGTTTGATTATATCTTCTTTATTGgtacctacgggttcaaggcctgccacagagcaacacacgaggtgcttcta Alignment from GeneWise GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG TGATCAGgtaagattgattgtgcaagtttatctatttgctgtgttcttagAGCTGTTTTGCTGTGATGCTGGGAAGTCCTGATGAGACACGGCAACTGCTGCGAACACAGTTTGATTATATCTTCTTTATTGgtacctacgggttcaaggcctgccacagagcaacacacgaggtgcttcta #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTC-AATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg taaatggcttactaggtgagtaggtgcccatgtctgcccctggcccgcaggaAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAACCACCTGACTCCCACTTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACAGAGTGGCCTGGTTCCACTATTTCCAATGCTGGGC-AACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAAATGCAGGAACAGTTGGTT------TTGCAAAATTCTATCACTCGTTTT------TACAATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCCAGGACTGCTGGGGTGTGGCCGTGTGGCCATCGGTCTGCAGAGTGATGAGGGAGGGTGTTGCATTggtaagaccttgctatttctgctggcccatcagagggaccatgccatctgc Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg taaatggcttactaggtgagtaggtgcccatgtctgcccctggcccgcaggaAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAACCACCTGACTCCCACTTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACAGAGTGGCCTGGTTCCACTATTTCCAATGCTGGGCAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAAATGCAGGAACAGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCCAGGACTGCTGGGGTGTGGCCGTGTGGCCATCGGTCTGCAGAGTGATGAGGGAGGGTGTTGCATTggtaagaccttgctatttctgctggcccatcagagggaccatgccatctgc Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG taaatggcttactaggtgagtaggtgcccatgtctgcccctggcccgcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAACCACCTGACTCCCACTTCCCTGCAACTAGGAGGCAAGAACCCCTGCTATGAT---GATAACTGTGACCCACAGACAGTGACCAACAGAGTGGCCTGGTTCCACTATTTCCAATGCTGGGCAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAAATGCAGGAACAGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCCAGGACTGCTGGGGTGTGGCCGTGTGGCCATCGGTCTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagaccttgctatttctgctggcccatcagagggaccatgccatctgc Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTC-AATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG taaatggcttactaggtgagtaggtgcccatgtctgcccctggcccgcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAACCACCTGACTCCCACTTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACAGAGTGGCCTGGTTCCACTATTTCCAATGCTGGGCA-ACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAAATGCAGGAACAGTTGGT------TTTGCAAAATTCTATCACTCGTTTTT------ACAATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCCAGGACTGCTGGGGTGTGGCCGTGTGGCCATCGGTCTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagaccttgctatttctgctggcccatcagagggaccatgccatctgc Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTT-CAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG taaatggcttactaggtgagtaggtgcccatgtctgcccctggcccgcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAACCACCTGACTCCCACTTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACAGAGTGGCCTGGTTCCACTATTTCCAATGCTGGGCA-ACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAAATGCAGGAACAGTTGGT------TTTGCAAAATTCTATCACTCGTTTTT------ACAATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCCAGGACTGCTGGGGTGTGGCCGTGTGGCCATCGGTCTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagaccttgctatttctgctggcccatcagagggaccatgccatctgc Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG taaatggcttactaggtgagtaggtgcccatgtctgcccctggcccgcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAACCACCTGACTCCCACTTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACAGAGTGGCCTGGTTCCACTATTTCCAATGCTGGGCAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAAATGCAGGAACAGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCCAGGACTGCTGGGGTGTGGCCGTGTGGCCATCGGTCTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagaccttgctatttctgctggcccatcagagggaccatgccatctgc Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG taaatggcttactaggtgagtaggtgcccatgtctgcccctggcccgcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAACCACCTGACTCCCACTTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACAGAGTGGCCTGGTTCCACTATTTCCAATGCTGGGCAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAAATGCAGGAACAGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCCAGGACTGCTGGGGTGTGGCCGTGTGGCCATCGGTCTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagaccttgctatttctgctggcccatcagagggaccatgccatctgc Alignment from GeneWise TCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG taaatggcttactaggtgagtaggtgcccatgtctgcccctggcccgcaggaagCCCTCGAGTAGGCAAGATGGTGATGACAGCTATGGCCAACCACCTGACTCCCACTTCCCTGCAACTAGGAGGCAAGAACCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACAGAGTGGCCTGGTTCCACTATTTCCAATGCTGGGCAACCTGTGTTGCACCAGAATACATCTTATGTAGCCAAGAAATGCAGGAACAGTTGGTT------TTGCAAAATTCTATCACTCGTTTTTAC------AATCCACAGACCCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCCAGGACTGCTGGGGTGTGGCCGTGTGGCCATCGGTCTGCAGAGTGATGAGGGAGGGTGTTGCATTGgtaagaccttgctatttctgctggcccatcagagggaccatgccatctgc #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCC-CTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcctctgtacagtgctcgttgcattgactttctcttttaaagccCCGACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTCTTAG-GACTGTAAGAAGTTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCCCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgaggtggtggtgagacaagttaaatgcagccagactggtcagaccttt Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcctctgtacagtgctcgttgcattgactttctcttttaaagccCCGACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTCTTAGGACTGTAAGAAGTTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCCCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgaggtggtggtgagacaagttaaatgcagccagactggtcagaccttt Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcctctgtacagtgctcgttgcattgactttctcttttaaagCCCCGACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTCTTAGGACTGTAAGAAGTTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCCCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgaggtggtggtgagacaagttaaatgcagccagactggtcagaccttt Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcctctgtacagtgctcgttgcattgactttctcttttaaagCCCCGACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTCTTAGGACTGTAAGAAGTTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCCCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgaggtggtggtgagacaagttaaatgcagccagactggtcagaccttt Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcctctgtacagtgctcgttgcattgactttctcttttaaagCCCCGACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTCTTAGGACTGTAAGAAGTTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCCCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgaggtggtggtgagacaagttaaatgcagccagactggtcagaccttt Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcctctgtacagtgctcgttgcattgactttctcttttaaagCCCCGACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTCTTAGGACTGTAAGAAGTTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCCCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgaggtggtggtgagacaagttaaatgcagccagactggtcagaccttt Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcctctgtacagtgctcgttgcattgactttctcttttaaagCCCCGACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTCTTAGGACTGTAAGAAGTTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCCCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgaggtggtggtgagacaagttaaatgcagccagactggtcagaccttt Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcctctgtacagtgctcgttgcattgactttctcttttaaagCCCCGACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTCTTAGGACTGTAAGAAGTTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCCCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgaggtggtggtgagacaagttaaatgcagccagactggtcagaccttt #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTC-CTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacacataaacaggtcaagttaaaactttacattcctaggaGGAAAGACTCCATTCCAATCCTTCCTTGGGTATGG-CCAGCAACATTCACCC---ACATTGgtaagcttggataaactacagaccaggaaggctgggcaagtggggttgag Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacacataaacaggtcaagttaaaactttacattcctaggaGGAAAGACTCCATTCCAATCCTTCCTTGGGTATGGCCAGCAACATTCACCC---ACATTGgtaagcttggataaactacagaccaggaaggctgggcaagtggggttgag Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacacataaacaggtcaagttaaaactttacattcctagGAGGAAAGACTCCATTCCAATCCTTCCTTGGGTATGGCCAGCAACATTCACCC---ACATTGgtaagcttggataaactacagaccaggaaggctgggcaagtggggttgag Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCT-GGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacacataaacaggtcaagttaaaactttacattcctagGAGGAAAGACTCCATTCCAATCCTTCCTTGGGTATGG-CCAGCAACA-TTCACCCACA--TTGgtaagcttggataaactacagaccaggaaggctgggcaagtggggttgag Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCC-TGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacacataaacaggtcaagttaaaactttacattcctagGAGGAAAGACTCCATTCCAATCCTTCCTTGGGTATGGC----CAGCAACATTCACCCACATTGgtaagcttggataaactacagaccaggaaggctgggcaagtggggttgag Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacacataaacaggtcaagttaaaactttacattcctagGAGGAAAGACTCCATTCCAATCCTTCCTTGGGTATGGCCAGCAACATTCACCC---ACATTGgtaagcttggataaactacagaccaggaaggctgggcaagtggggttgag Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacacataaacaggtcaagttaaaactttacattcctagGAGGAAAGACTCCATTCCAATCCTTCCTTGGGTATGGCCAGCAACATTCACCC---ACATTGgtaagcttggataaactacagaccaggaaggctgggcaagtggggttgag Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacacataaacaggtcaagttaaaactttacattcctagGAGGAAAGACTCCATTCCAATCCTTCCTTGGGTATGGCCAGCAACATTCACCC---ACATTGgtaagcttggataaactacagaccaggaaggctgggcaagtggggttgag #### Ankrd1_ID7095_8 --> 0 - 0 Original Alignment GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAAC-CGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttcaaggctcaaggtcccctggtttggtcttgtgaatcatttcctagGAGGAGGCCACACCATTGCATGATGCAGTGAGATTAAACCCGTTAT---ATGATT---CTCTTGATGGCATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtagatcagcagatcaataagggcggggttagatacatctccagcaaggg Alignment from CESAR GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAAC-CGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttcaaggctcaaggtcccctggtttggtcttgtgaatcatttcctagGAGGAGGCCACACCATTGCATGATGCAGTGAGATTAAACCCGTTAT---ATGATT---CTCTTGATGGCATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtagatcagcagatcaataagggcggggttagatacatctccagcaaggg Alignment from Spaln_aa2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAAC-CGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttcaaggctcaaggtcccctggtttggtcttgtgaatcatttcctagGAGGAGGCCACACCATTGCATGATGCAGTGAGATTAAACcCGTTAT---ATGATT---CTCTTGATGGCATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtagatcagcagatcaataagggcggggttagatacatctccagcaaggg Alignment from Spaln_nt2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttcaaggctcaaggtcccctggtttggtcttgtgaatcatttcctagGAGGAGGCCACACCATTGCATGATGCAGTGAGATTAAAC--CCGTTATATGATT---CTCTTGATGGCATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtagatcagcagatcaataagggcggggttagatacatctccagcaaggg Alignment from Pairagon GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAA-CCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttcaaggctcaaggtcccctggtttggtcttgtgaatcatttcctagGAGGAGGCCACACCATTGCATGATGCAGTGAGATTAAACCCGTTATATGAT------TCTCTTGATGGCATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtagatcagcagatcaataagggcggggttagatacatctccagcaaggg Alignment from Exonerate_protein2genome GGAGACACCCCACTGCATGATGCTGTGAGGCTGAAC-CGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttcaaggctcaaggtcccctggtttggtcttgtgaatcatttcctaggagGAGGCCACACCATTGCATGATGCAGTGAGATTAAACCCGTTATATGATT------CTCTTGATGGCATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtagatcagcagatcaataagggcggggttagatacatctccagcaaggg Alignment from Exonerate_coding2genome tctttcaaggctcaaggtcccctggtttggtcttgtgaatcatttcctaggaggaggccacaccattgcatgatgcagtgagattaaacccgttatatgattctcttgatggcatttggtgcagacctgaaggtgaagaactgtgtagatcagcagatcaataagggcggggttagatacatctccagcaaggg Alignment from GeneWise ---GGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttcaaggctcaaggtcccctggtttggtcttgtgaatcatttcctagGAGGAGGCCACACCATTGCATGATGCAGTGAGATTAAACCCGTTAT--ATGATT---CTCTTGATGGCATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtagatcagcagatcaataagggcggggttagatacatctccagcaaggg #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTAC-GAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAG---GACAGA gatatgtatggttgttggactccacccaaattgtactgccttacccacagTTGCTCAGCTCAACACTATATGTGGCAGTCAGGACTGACCATTATCAAGTGCA-TGAGCATCTCTTCACTAGCAAGACTGATCTCAACGCAAGGGACAACAGAgtgagtatgagtgtaacctgacttgaattaggggcttatagatgattatg Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gatatgtatggttgttggactccacccaaattgtactgccttacccacagTTGCTCAGCTCAACACTATATGTGGCAGTCAGGACTGACCATTATCAAGTGCATGAGCATCTCTTCACTAGCAAGACTGATCTCAACGCAAGGGACAACAGAgtgagtatgagtgtaacctgacttgaattaggggcttatagatgattatg Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gatatgtatggttgttggactccacccaaattgtactgccttacccacagTTGCTCAGCTCAACACTATATGTGGCAGTCAGGACTGACCATTATCAAGTGCATGAGCATCTCTTCACTAGCAAGACTGATCTCAACGCAAGGGACAACAGAgtgagtatgagtgtaacctgacttgaattaggggcttatagatgattatg Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTA-CGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACA---GA gatatgtatggttgttggactccacccaaattgtactgccttacccacagTTGCTCAGCTCAACACTATATGTGGCAGTCAGGACTGACCATTATCAAGTGC-ATGAGCATCTCTTCACTAGCAAGACTGATCTCAACGCAAGGGACAACAGAgtgagtatgagtgtaacctgacttgaattaggggcttatagatgattatg Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTA-CGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGG---ACAGA gatatgtatggttgttggactccacccaaattgtactgccttacccacagTTGCTCAGCTCAACACTATATGTGGCAGTCAGGACTGACCATTATCAAGTGCA-TGAGCATCTCTTCACTAGCAAGACTGATCTCAACGCAAGGGACAACAGAgtgagtatgagtgtaacctgacttgaattaggggcttatagatgattatg Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gatatgtatggttgttggactccacccaaattgtactgccttacccacagTTGCTCAGCTCAACACTATATGTGGCAGTCAGGACTGACCATTATCAAGTGCATGAGCATCTCTTCACTAGCAAGACTGATCTCAACGCAAGGGACAACAGAgtgagtatgagtgtaacctgacttgaattaggggcttatagatgattatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGAGAA gatatgtatggttgttggactccacccaaattgtactgccttacccacagTTGCTCAGCTCAACACTATATGTGGCAGTCAGGACTGACCATTATCAAGTGCATGAGCATCTCTTCACTAGCAAGACTGATCTCAACGCAAGGGACAACAGAgtgagtatgagtgtaacctgacttgaattaggggcttatagatgattatg #### Ankrd1_ID7101_4 --> 0 - 0 Original Alignment ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGAC-AAGAACAGCCCCGACGTCTGCGATGAG ggatggaaggataggaaaacaatcagtacattcggttgcattcccaacagAGTGAGCCTGTTGATGTACCTAGGTTTCTAAAAGCTGCACTGGATAACAAACTTCCAGTTGTAGAAAAGTTCCTCTCAGAGCAAGAACAGTC-TGATGTCTGTGATGAAgtaaggagtagtactgtgccctgccactttctggcctgccatttgcctgg Alignment from CESAR ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG ggatggaaggataggaaaacaatcagtacattcggttgcattcccaacagAGTGAGCCTGTTGATGTACCTAGGTTTCTAAAAGCTGCACTGGATAACAAACTTCCAGTTGTAGAAAAGTTCCTCTCAGAGCAAGAACAGTCTGATGTCTGTGATGAAgtaaggagtagtactgtgccctgccactttctggcctgccatttgcctgg Alignment from Spaln_aa2Genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG ggatggaaggataggaaaacaatcagtacattcggttgcattcccaacagAGTGAGCCTGTTGATGTACCTAGGTTTCTAAAAGCTGCACTGGATAACAAACTTCCAGTTGTAGAAAAGTTCCTCTCAGAGCAAGAACAGTCTGATGTCTGTGATGAAgtaaggagtagtactgtgccctgccactttctggcctgccatttgcctgg Alignment from Spaln_nt2Genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGA-CAAGAACAGCCCCGACGTCTGCGATGAG ggatggaaggataggaaaacaatcagtacattcggttgcattcccaacagAGTGAGCCTGTTGATGTACCTAGGTTTCTAAAAGCTGCACTGGATAACAAACTTCCAGTTGTAGAAAAGTTCCTCTCAGAGCAAGAACAG-TCTGATGTCTGTGATGAAgtaaggagtagtactgtgccctgccactttctggcctgccatttgcctgg Alignment from Pairagon ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGA-CAAGAACAGCCCCGACGTCTGCGATGAG ggatggaaggataggaaaacaatcagtacattcggttgcattcccaacagAGTGAGCCTGTTGATGTACCTAGGTTTCTAAAAGCTGCACTGGATAACAAACTTCCAGTTGTAGAAAAGTTCCTCTCAGAGCAAGAACAG-TCTGATGTCTGTGATGAAgtaaggagtagtactgtgccctgccactttctggcctgccatttgcctgg Alignment from Exonerate_protein2genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG ggatggaaggataggaaaacaatcagtacattcggttgcattcccaacagAGTGAGCCTGTTGATGTACCTAGGTTTCTAAAAGCTGCACTGGATAACAAACTTCCAGTTGTAGAAAAGTTCCTCTCAGAGCAAGAACAGTCTGATGTCTGTGATGAAgtaaggagtagtactgtgccctgccactttctggcctgccatttgcctgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG ggatggaaggataggaaaacaatcagtacattcggttgcattcccaacagAGTGAGCCTGTTGATGTACCTAGGTTTCTAAAAGCTGCACTGGATAACAAACTTCCAGTTGTAGAAAAGTTCCTCTCAGAGCAAGAACAGTCTGATGTCTGTGATGAAgtaaggagtagtactgtgccctgccactttctggcctgccatttgcctgg #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTG-AGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacaccaaaattattgacctctggcctccacagCCCCTAGATGATGTATTGCAGGAAAG-TCTTACAGGACATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgcctactggttaagaaaatttcactagctggttttctttgcagGGACT Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacaccaaaattattgacctctggcctccacagCCCCTAGATGATGTATTGCAGGAAAGTCTTACAGGACATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgcctactggttaagaaaatttctttatcacacttactattcagGGACT Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacaccaaaattattgacctctggcctccacagCCCCTAGATGATGTATTGCAGGAAAGTCTTACAGGACATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgcctactggttaagaaaatttcactagctggttttctttgcagGGACT Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTG-AGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacaccaaaattattgacctctggcctccacagCCCCTAGATGATGTATTGCAGGAAAG-TCTTACAGGACATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATT---TGCTGATGAACTACATGGTGCCATGAAGgtgcctactggttaagaaaatttcactagctggttttctttgcagGGACT Alignment from Pairagon CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacaccaaaattattgacctctggcctccacagCCCCTAGATGATGTATTGCAGGAAAGTCTTACAGGACATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTTGCT---GATGAACTACATGGTGCCATGAAGgtgcctactggttaagaaaatttcactagctggttttctttgcagGGACT Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacaccaaaattattgacctctggcctccacagCCCCTAGATGATGTATTGCAGGAAAGTCTTACAGGACATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgcctactggttaagaaaatttcactagctggttttctttgcagGGACT Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacaccaaaattattgacctctggcctccacagCCCCTAGATGATGTATTGCAGGAAAGTCTTACAGGACATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgcctactggttaagaaaatttcactagctggttttctttgcagGGACT Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacaccaaaattattgacctctggcctccacagCCCCTAGATGATGTATTGCAGGAAAGTCTTACAGGACATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgcctactggttaagaaaatttcactagctggttttctttgcagGGACT #### Apba1_ID5242_11 --> 0 - 0 Original Alignment ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGC-CAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG tactaaaaacaaaatgcagtaggacagaatgagctgttccttgccttcagATCTGCAGCCTTACAAGAGGGGGAATAGCTGAAAGAGGAGATGTCCGTGTTGGACATCGAATCATTGAAATTAATGGCCCAAAGTA-TGTAGCTATACCACATGAAGAGATTGTCCACATCCTGTCCAATGCTGTGGGGGAGgtaggttcagatcagttggtcaggctttatagtggtgtcttttccttctc Alignment from CESAR ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG tactaaaaacaaaatgcagtaggacagaatgagctgttccttgccttcagATCTGCAGCCTTACAAGAGGGGGAATAGCTGAAAGAGGAGATGTCCGTGTTGGACATCGAATCATTGAAATTAATGGCCCAAAGTATGTAGCTATACCACATGAAGAGATTGTCCACATCCTGTCCAATGCTGTGGGGGAGgtaggttcagatcagttggtcaggctttatagtggtgtcttttccttctc Alignment from Spaln_aa2Genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG tactaaaaacaaaatgcagtaggacagaatgagctgttccttgccttcagATCTGCAGCCTTACAAGAGGGGGAATAGCTGAAAGAGGAGATGTCCGTGTTGGACATCGAATCATTGAAATTAATGGCCCAAAGTATGTAGCTATACCACATGAAGAGATTGTCCACATCCTGTCCAATGCTGTGGGGGAGgtaggttcagatcagttggtcaggctttatagtggtgtcttttccttctc Alignment from Spaln_nt2Genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG tactaaaaacaaaatgcagtaggacagaatgagctgttccttgccttcagATCTGCAGCCTTACAAGAGGGGGAATAGCTGAAAGAGGAGATGTCCGTGTTGGACATCGAATCATTGAAATTAATGGCCCAAAGTATGTAGCTATACCACATGAAGAGATTGTCCACATCCTGTCCAATGCTGTGGGGGAGgtaggttcagatcagttggtcaggctttatagtggtgtcttttccttctc Alignment from Pairagon ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGG-CCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG tactaaaaacaaaatgcagtaggacagaatgagctgttccttgccttcagATCTGCAGCCTTACAAGAGGGGGAATAGCTGAAAGAGGAGATGTCCGTGTTGGACATCGAATCATTGAAATTAATGGCCCAAAGTAT-GTAGCTATACCACATGAAGAGATTGTCCACATCCTGTCCAATGCTGTGGGGGAGgtaggttcagatcagttggtcaggctttatagtggtgtcttttccttctc Alignment from Exonerate_protein2genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG tactaaaaacaaaatgcagtaggacagaatgagctgttccttgccttcagATCTGCAGCCTTACAAGAGGGGGAATAGCTGAAAGAGGAGATGTCCGTGTTGGACATCGAATCATTGAAATTAATGGCCCAAAGTATGTAGCTATACCACATGAAGAGATTGTCCACATCCTGTCCAATGCTGTGGGGGAGgtaggttcagatcagttggtcaggctttatagtggtgtcttttccttctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG tactaaaaacaaaatgcagtaggacagaatgagctgttccttgccttcagATCTGCAGCCTTACAAGAGGGGGAATAGCTGAAAGAGGAGATGTCCGTGTTGGACATCGAATCATTGAAATTAATGGCCCAAAGTATGTAGCTATACCACATGAAGAGATTGTCCACATCCTGTCCAATGCTGTGGGGGAGgtaggttcagatcagttggtcaggctttatagtggtgtcttttccttctc #### Arl2_ID1477_2 --> 1 - 2 Original Alignment tGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGC-TTCAACATCAAGACCCTGGAGCACCGCgg gtggtaatgccatagatcttagaaactccagtttctcctctttctctcagtGGTTTAGATAAGGCTACCAAAACAACTATTCTCAAGAAGTTTAATGGAGAGGATGTGGAAACGATCTCTTTGACACTAGGGCATCAACA-TAAA---TTGGAGCACCGTgggtaggtagggcactgactctgaggtcatggtcatgttgagatccctgagg Alignment from CESAR tGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCgg gtggtaatgccatagatcttagaaactccagtttctcctctttctctcagtGGTTTAGATAAGGCTACCAAAACAACTATTCTCAAGAAGTTTAATGGAGAGGATGTGGAAACGATCTCTTTGACACTAGGGCATCAACATAAA---TTGGAGCACCGTgggtaggtagggcactgactctgaggtcatggtcatgttgagattgtgctcc Alignment from Spaln_aa2Genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagaaactccagtttctcctctttctctcagTGGTTTAGATAAGGCTACCAAAACAACTATTCTCAAGAAGTTTAATGGAGAGGATGTGGAAACGATCTCTTTGACACTAGGGCATCAACATAAA---TTGGAGCACCGTGGgtaggtagggcactgactctgaggtcatggtcatgttgagatccctgagg Alignment from Spaln_nt2Genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACT-GGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagaaactccagtttctcctctttctctcagTGGTTTAGATAAGGCTACCAAAACAACTATTCTCAAGAAGTTTAATGGAGAGGATGTGGAAACGATCTCTTTGACACTAGGGCATCAACATAAA----TTGGAGCACCGTGGgtaggtagggcactgactctgaggtcatggtcatgttgagatccctgagg Alignment from Pairagon TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACT-GGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagaaactccagtttctcctctttctctcagTGGTTTAGATAAGGCTACCAAAACAACTATTCTCAAGAAGTTTAATGGAGAGGATGTGGAAACGATCTCTTTGACACTAGGGCATCAACATAAA----TTGGAGCACCGTGGgtaggtagggcactgactctgaggtcatggtcatgttgagatccctgagg Alignment from Exonerate_protein2genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagaaactccagtttctcctctttctctcagTGGTTTAGATAAGGCTACCAAAACAACTATTCTCAAGAAGTTTAATGGAGAGGATGTGGAAACGATCTCTTTGACACTAGGGCATCAACATAAA---TTGGAGCACCGTGGgtaggtagggcactgactctgaggtcatggtcatgttgagatccctgagg Alignment from Exonerate_coding2genome gtggtaatgccatagatcttagaaactccagtttctcctctttctctcagtggtttagataaggctaccaaaacaactattctcaagaagtttaatggagaggatgtggaaacgatctctttgacactagggcatcaacataaattggagcaccgtgggtaggtagggcactgactctgaggtcatggtcatgttgagatccctgagg Alignment from GeneWise TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagaaactccagtttctcctctttctctcagTGGTTTAGATAAGGCTACCAAAACAACTATTCTCAAGAAGTTTAATGGAGAGGATGTGGAAACGATCTCTTTGACACTAGGGCATCAACATAAA---TTGGAGCACCGTGGgtaggtagggcactgactctgaggtcatggtcatgttgagatccctgagg #### Asah2_ID6669_5 --> 0 - 2 Original Alignment AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAG-ATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAag agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGCATCA-TCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAaggtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from CESAR AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAag agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGCATCATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAaggtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Spaln_aa2Genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGCATCATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Spaln_nt2Genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGCATCATCGAAG---CGCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Pairagon AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGCATCATCGAAGCG---CATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Exonerate_protein2genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGCATCATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Exonerate_coding2genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGCATCATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from GeneWise AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGCATCATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGC-GTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG agtcagtcttttcagactaaccttcccttttctgtgtctcactttgaaagATGCGCTGGACGCGTGGTGTCTCCGTGTGGCCTGTTGGCTTGGTGGGTGGCCTACGATTTGAAAGTCCCCAAGTACAGGATGGTCGTCGTTGTTG-TTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTACTATTAGCTAAACCCAATGCCCGATTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCCGCCAATTGTACTCAGgtaagaggtcagttagcaggtcagaaaaatgggggatggtgggctaagca Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG agtcagtcttttcagactaaccttcccttttctgtgtctcactttgaaagATGCGCTGGACGCGTGGTGTCTCCGTGTGGCCTGTTGGCTTGGTGGGTGGCCTACGATTTGAAAGTCCCCAAGTACAGGATGGTCGTCGTTGTTGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTACTATTAGCTAAACCCAATGCCCGATTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCCGCCAATTGTACTCAGgtaagaggtcagttagcaggtcagaaaaatgggggatggtgggctaagca Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG agtcagtcttttcagactaaccttcccttttctgtgtctcactttgaaagATGCGCTGGACGCGTGGTGTCTCCGTGTGGCCTGTTGGCTTGGTGGGTGGCCTACGATTTGAAAGTCCCCAAGTACAGGATGGTCGTCGTTGTTGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTACTATTAGCTAAACCCAATGCCCGATTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCCGCCAATTGTACTCAGgtaagaggtcagttagcaggtcagaaaaatgggggatggtgggctaagca Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG agtcagtcttttcagactaaccttcccttttctgtgtctcactttgaaagATGCGCTGGACGCGTGGTGTCTCCGTGTGGCCTGTTGGCTTGGTGGGTGGCCTACGATTTGAAAGTCCCCAAGTACAGGATGGTCGTCGTTGTTGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTACTATTAGCTAAACCCAATGCCCGATTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCCGCCAATTGTACTCAGgtaagaggtcagttagcaggtcagaaaaatgggggatggtgggctaagca Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCG-CGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG agtcagtcttttcagactaaccttcccttttctgtgtctcactttgaaagATGCGCTGGACGCGTGGTGTCTCCGTGTGGCCTGTTGGCTTGGTGGGTGGCCTACGATTTGAAAGTCCCCAAGTACAGGATGGTCGTCGTTGT-TGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTACTATTAGCTAAACCCAATGCCCGATTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCCGCCAATTGTACTCAGgtaagaggtcagttagcaggtcagaaaaatgggggatggtgggctaagca Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG agtcagtcttttcagactaaccttcccttttctgtgtctcactttgaaagATGCGCTGGACGCGTGGTGTCTCCGTGTGGCCTGTTGGCTTGGTGGGTGGCCTACGATTTGAAAGTCCCCAAGTACAGGATGGTCGTCGTTGTTGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTACTATTAGCTAAACCCAATGCCCGATTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCCGCCAATTGTACTCAGgtaagaggtcagttagcaggtcagaaaaatgggggatggtgggctaagca Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGGTA agtcagtcttttcagactaaccttcccttttctgtgtctcactttgaaagATGCGCTGGACGCGTGGTGTCTCCGTGTGGCCTGTTGGCTTGGTGGGTGGCCTACGATTTGAAAGTCCCCAAGTACAGGATGGTCGTCGTTGTTGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTACTATTAGCTAAACCCAATGCCCGATTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCCGCCAATTGTACTCAGGTAagaggtcagttagcaggtcagaaaaatgggggatggtgggctaagca Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG agtcagtcttttcagactaaccttcccttttctgtgtctcactttgaaagATGCGCTGGACGCGTGGTGTCTCCGTGTGGCCTGTTGGCTTGGTGGGTGGCCTACGATTTGAAAGTCCCCAAGTACAGGATGGTCGTCGTTGTTGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATCGCCCTGCCCTTACTATTAGCTAAACCCAATGCCCGATTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTCCTAAGTCACCTTGTAGATCCAACAGATTTGGAATCGCGGGCCGCCAATTGTACTCAGgtaagaggtcagttagcaggtcagaaaaatgggggatggtgggctaagca #### BC048609_ID1423_2 --> 0 - 1 Original Alignment TTCTCCCAGGTGATCAGCATCGGCTGG-GCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tgcaatgattgtgcacccatcaggtatctaaattgtgcttttaaattcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTA-CATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTCagtgtgtgggggcaggagcatgaagggggggcatttttccctacctctaga Alignment from CESAR TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tgcaatgattgtgcacccatcaggtatctaaattgtgcttttaaattcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTCagtgtgtgggggcaggagcatgaagggggggcatttttccctacctctaga Alignment from Spaln_aa2Genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatcaggtatctaaattgtgcttttaaattcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTCAgtgtgtgggggcaggagcatgaagggggggcatttttccctacctctaga Alignment from Spaln_nt2Genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatcaggtatctaaattgtgcttttaaattcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTCAgtgtgtgggggcaggagcatgaagggggggcatttttccctacctctaga Alignment from Pairagon TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatcaggtatctaaattgtgcttttaaattcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTCAgtgtgtgggggcaggagcatgaagggggggcatttttccctacctctaga Alignment from Exonerate_protein2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatcaggtatctaaattgtgcttttaaattcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTCAgtgtgtgggggcaggagcatgaagggggggcatttttccctacctctaga Alignment from Exonerate_coding2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatcaggtatctaaattgtgcttttaaattcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTCAgtgtgtgggggcaggagcatgaagggggggcatttttccctacctctaga Alignment from GeneWise TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatcaggtatctaaattgtgcttttaaattcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTCAgtgtgtgggggcaggagcatgaagggggggcatttttccctacctctaga #### Bscl2_ID2424_7 --> 1 - 0 Original Alignment gTACCTGCTGTACAACTTCCCCATGACC-TGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacagccatgtgtttctttttcccccctaccccacaggTACCTGCTTTACAATTTTCCTATGACTCTGTGCCTTTG-GGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTGCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaaatgttcttgggctcattttctctcactagacaaaggaacctatatc Alignment from CESAR gTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacagccatgtgtttctttttcccccctaccccacaggTACCTGCTTTACAATTTTCCTATGACTCTGTGCCTTTGGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTGCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaaatgttcttgggctcattttctctcactagacaaaggaacctatatc Alignment from Spaln_aa2Genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacagccatgtgtttctttttcccccctaccccacagGTACCTGCTTTACAATTTTCCTATGACTCTGTGCCTTTGGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTGCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaaatgttcttgggctcattttctctcactagacaaaggaacctatatc Alignment from Spaln_nt2Genome GTACCTGCTGTACAACTTCCCCATGAC-CTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacagccatgtgtttctttttcccccctaccccacagGTACCTGCTTTACAATTTTCCTATGACTCTGTGCCTTTG-GGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTGCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaaatgttcttgggctcattttctctcactagacaaaggaacctatatc Alignment from Pairagon GTACCTGCTGTACAACTTCCCCATGAC-CTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacagccatgtgtttctttttcccccctaccccacagGTACCTGCTTTACAATTTTCCTATGACTCTGTGCCTTTG-GGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTGCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaaatgttcttgggctcattttctctcactagacaaaggaacctatatc Alignment from Exonerate_protein2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGGTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGAT ccaacttaactctaacagccatgtgtttctttttcccccctaccccacagGTACCTGCTTTACAATTTTCCTATGACTCTGTGCCTTTGGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTGCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGGTAAATGTTCTTGGGCTCATTTTCTCTCACTAGACAAAGGAACCTATATC Alignment from Exonerate_coding2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGGTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGAT ccaacttaactctaacagccatgtgtttctttttcccccctaccccacagGTACCTGCTTTACAATTTTCCTATGACTCTGTGCCTTTGGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTGCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGGTAAATGTTCTTGGGCTCATTTTCTCTCACTAGACAAAGGAACCTATATC Alignment from GeneWise GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctaacagccatgtgtttctttttcccccctaccccacagGTACCTGCTTTACAATTTTCCTATGACTCTGTGCCTTTGGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTGCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGGCCTCATCACCACTCCTCCTTGCAGgtaaatgttcttgggctcattttctctcactagacaaaggaacctatatc #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAACTCA-CACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACCAGC-CGGA------GACCATATTTCACACCACCAACCAggtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACCAGCCGGAGAC------CATATTTCACACCACCAACCAggtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACCAGCCGGAGAC------CATATTTCACACCACCAACCAGgtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACCAGCCGGAGAC------CATATTTCACACCACCAACCAGgtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from Pairagon GTTAATATCCGACAAAGGGATAAC---------------------TCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACCAGCCGGAGACCATATTTCACACCAC---------------------------CAACCAGgtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from Exonerate_protein2genome ATCAGCCAGGTCAGGAATCTACCCAGCAGTCGGATGTGACG---GAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAGAGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGAT CCAGTATAGGATCACAACTCATTGGTTGAAGCACCTTTTCTCTCTCTCAGGTTAATACATGTCAAAGGGACAACTCACCAGCCGGAGACCATATTTCACACCACCAACCAGGTAAGCGAATTAGGCATTAGGAATTTGGAAATAGACCAGGGATTCCTTCA Alignment from Exonerate_coding2genome ATCAGCCAGGTCAGGAATCTACCCAGCAGTCGGATGTGACG---GAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAGAGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGAT CCAGTATAGGATCACAACTCATTGGTTGAAGCACCTTTTCTCTCTCTCAGGTTAATACATGTCAAAGGGACAACTCACCAGCCGGAGACCATATTTCACACCACCAACCAGGTAAGCGAATTAGGCATTAGGAATTTGGAAATAGACCAGGGATTCCTTCA Alignment from GeneWise GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACCAGCCGGA------GACCATATTTCACACCACCAACCAGgtaagcgaattaggcattaggaatttggaaatagaccagggattccttca #### Bscl2_ID2426_9 --> 2 - 1 Original Alignment gtCAGGAATCTACCCAG-CAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacaggtCAGAAATCCACCCAGCCAGTCAGATG-TATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAggtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from CESAR gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacaggtCAGAAATCCACCCAGCCAGTCAGATGTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAggtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Spaln_aa2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacagGTCAGAAATCCACCCAGCCAGTCAGATGTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Spaln_nt2Genome GTCAGGAATCTACCCAGC-AGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacagGTCAGAAATCCACCCAGCCAGTCAGATGT-ATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Pairagon GTCAGGAATCTACCCAG-CAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacagGTCAGAAATCCACCCAGCCAGTCAGATGT-ATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Exonerate_protein2genome GGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAGGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG AGTGTTAGGTCCTTGTGTTGGGGGTAAAAATAAAGTCTTTTACTGCACAGGTCAGAAATCCACCCAGCCAGTCAGATGTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Exonerate_coding2genome GGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAGGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG AGTGTTAGGTCCTTGTGTTGGGGGTAAAAATAAAGTCTTTTACTGCACAGGTCAGAAATCCACCCAGCCAGTCAGATGTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from GeneWise GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacagGTCAGAAATCCACCCAGCCAGTCAGATGTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAA-GAGCCAGAGGCTAGTGATg aatttctaatactcccacccccattgcagctccatttcttttctcctcagagGGCCAA---CCAGAAGAGATGAAAGCAAAGAAGTGGCCGCTGAATAGGGAGGACAAGCGGCGAAC-GGATGCTGGTGCTggtacagactgcttggggggtcgcttgcttaacataatgtagtcgagaaga Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg aatttctaatactcccacccccattgcagctccatttcttttctcctcagagGGCCAA---CCAGAAGAGATGAAAGCAAAGAAGTGGCCGCTGAATAGGGAGGACAAGCGGCGAACGGATGCTGGTGCTggtacagactgcttggggggtcgcttgcttaacataatgtagtcgagaaga Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG aatttctaatactcccacccccattgcagctccatttcttttctcctcagAGGGCCAA---CCAGAAGAGATGAAAGCAAAGAAGTGGCCGCTGAATAGGGAGGACAAGCGGCGAACGGATGCTGGTGCTGgtacagactgcttggggggtcgcttgcttaacataatgtagtcgagaaga Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG aatttctaatactcccacccccattgcagctccatttcttttctcctcagAGGGCCAAC---CAGAAGAGATGAAAGCAAAGAAGTGGCCGCTGAATAGGGAGGACAAGCGGCGAACGGATGCTGGTGCTGgtacagactgcttggggggtcgcttgcttaacataatgtagtcgagaaga Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAG---------------AGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCA-----------GAGGCTAGTGATG aatttctaatactcccacccccattgcagctccatttcttttctcctcagAGGGCC------------------AACCAGAAGAGATGAAAGCAAAGAAGTGGCCGCTGAATAGGGAGGA-----------CAAGCGGCGAACGGATGCTGGTGCTGgtacagactgcttggggggtcgcttgcttaacataatgtagtcgagaaga Alignment from Exonerate_protein2genome aatttctaatactcccacccccattgcagctccatttcttttctcctcagagggccaaccagaagagatgaaagcaaagaagtggccgctgaatagggaggacaagcggcgaacggatgctggtgctggtacagactgcttggggggtcgcttgcttaacataatgtagtcgagaaga Alignment from Exonerate_coding2genome aatttctaatactcccacccccattgcagctccatttcttttctcctcagagggccaaccagaagagatgaaagcaaagaagtggccgctgaatagggaggacaagcggcgaacggatgctggtgctggtacagactgcttggggggtcgcttgcttaacataatgtagtcgagaaga Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG aatttctaatactcccacccccattgcagctccatttcttttctcctcagAGGGCCAA---CCAGAAGAGATGAAAGCAAAGAAGTGGCCGCTGAATAGGGAGGACAAGCGGCGAACGGATGCTGGTGCTGgtacagactgcttggggggtcgcttgcttaacataatgtagtcgagaaga #### Btaf1_ID7227_10 --> 0 - 0 Original Alignment ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTT-TGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tctttctctagtacagagttaacattggaacatcaatttgattccttcagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTG-TTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaagtgcaggttaaagctatggatgtacatacccactccatattctgtc Alignment from CESAR ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tctttctctagtacagagttaacattggaacatcaatttgattccttcagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaagtgcaggttaaagctatggatgtacatacccactccatatacttcc Alignment from Spaln_aa2Genome GATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGA tctttctctagtacagagttaacattggaacatcaatttgattccttcagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaagtgcaggttaaagctatggatgtacatacccactccatattctgtc Alignment from Spaln_nt2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tctttctctagtacagagttaacattggaacatcaatttgattccttcagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaagtgcaggttaaagctatggatgtacatacccactccatattctgtc Alignment from Pairagon ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTT-TGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tctttctctagtacagagttaacattggaacatcaatttgattccttcagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTG-TTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaagtgcaggttaaagctatggatgtacatacccactccatattctgtc Alignment from Exonerate_protein2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tctttctctagtacagagttaacattggaacatcaatttgattccttcagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaagtgcaggttaaagctatggatgtacatacccactccatattctgtc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA tctttctctagtacagagttaacattggaacatcaatttgattccttcagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaagtgcaggttaaagctatggatgtacatacccactccatattctgtc #### Btaf1_ID7249_28 --> 1 - 2 Original Alignment gGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATAT-CTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAag gcttaaaacctgatcaatctaatgataacctttcaaacttatttcgccaggGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGTCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCCTGAATCCAC-ACATTATACCGGCCCTTCCACTGAAAGGATAaggtaagtgggtggattatctaacaatccatagctaaagctaaggtcctttg Alignment from CESAR gGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAag gcttaaaacctgatcaatctaatgataacctttcaaacttatttcgccaggGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGTCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCCTGAATCCACACATTATACCGGCCCTTCCACTGAAAGGATAaggtaagtgggtggattatctaacaatccatagctaaagctaaggtcctttg Alignment from Spaln_aa2Genome GGGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAA gcttaaaacctgatcaatctaatgataacctttcaaacttatttcgccagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGTCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCCTGAATCCACACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaagtgggtggattatctaacaatccatagctaaagctaaggtcctttg Alignment from Spaln_nt2Genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG gcttaaaacctgatcaatctaatgataacctttcaaacttatttcgccagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGTCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCCTGAATCCACACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaagtgggtggattatctaacaatccatagctaaagctaaggtcctttg Alignment from Pairagon GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTG--------CATTATACTGGCCCTCCCACTGAAAGGATAAG gcttaaaacctgatcaatctaatgataacctttcaaacttatttcgccagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGTCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATC--------CTGAATCCACACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaagtgggtggattatctaacaatccatagctaaagctaaggtcctttg Alignment from Exonerate_protein2genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG gcttaaaacctgatcaatctaatgataacctttcaaacttatttcgccagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGTCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCCTGAATCCACACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaagtgggtggattatctaacaatccatagctaaagctaaggtcctttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG gcttaaaacctgatcaatctaatgataacctttcaaacttatttcgccagGGCCCAGGAATATGCAAGATCAAGATTAGCAGAGTGTATGTCACTCCCTTCCCTAGTGGTTTGTCCTCCATCATTGACAGGTCACTGGGTAGACGAAGTAGGGAAATTTTGTTCTAGAGAATATCCTGAATCCACACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaagtgggtggattatctaacaatccatagctaaagctaaggtcctttg #### Btaf1_ID7258_37 --> 0 - 0 Original Alignment AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACT-GTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccttgagtctgacaagttcatgatgctcgaatccttctctacagAAACGTGTGGTTAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTCGTTATTA-CCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTCCTTGACCTGTTTACTCTGGATAAAgtgagcacataatgagtggtactaccacgcattagtcacaagattgttca Alignment from CESAR AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccttgagtctgacaagttcatgatgctcgaatccttctctacagAAACGTGTGGTTAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTCGTTATTACCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTCCTTGACCTGTTTACTCTGGATAAAgtgagcacataatgagtggtactaccacgcattagtcacaagattgttca Alignment from Spaln_aa2Genome GAAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAA taggcaccttgagtctgacaagttcatgatgctcgaatccttctctacagAAACGTGTGGTTAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTCGTTATTACCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTCCTTGACCTGTTTACTCTGGATAAAgtgagcacataatgagtggtactaccacgcattagtcacaagattgttca Alignment from Spaln_nt2Genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccttgagtctgacaagttcatgatgctcgaatccttctctacagAAACGTGTGGTTAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTCGTTATTACCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTCCTTGACCTGTTTACTCTGGATAAAgtgagcacataatgagtggtactaccacgcattagtcacaagattgttca Alignment from Pairagon AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACT-GTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccttgagtctgacaagttcatgatgctcgaatccttctctacagAAACGTGTGGTTAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTCGTTATTA-CCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTCCTTGACCTGTTTACTCTGGATAAAgtgagcacataatgagtggtactaccacgcattagtcacaagattgttca Alignment from Exonerate_protein2genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccttgagtctgacaagttcatgatgctcgaatccttctctacagAAACGTGTGGTTAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTCGTTATTACCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTCCTTGACCTGTTTACTCTGGATAAAgtgagcacataatgagtggtactaccacgcattagtcacaagattgttca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccttgagtctgacaagttcatgatgctcgaatccttctctacagAAACGTGTGGTTAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTCGTTATTACCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTCCTTGACCTGTTTACTCTGGATAAAgtgagcacataatgagtggtactaccacgcattagtcacaagattgttca #### Btrc_ID9463_12 --> 1 - 2 Original Alignment gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAG-GAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg acctagttgttgagaagtaacttacttttgccttttttttttcctttcaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGCGAGTTGGTAC-CTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATgggtgagtttactggtaatatcttttgatcagagaaagaggttgaagacaca Alignment from CESAR gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg acctagttgttgagaagtaacttacttttgccttttttttttcctttcaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGCGAGTTGGTACCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATgggtgagtttactggtaatatcttttgatcagagaaagaggttgaagacaca Alignment from Spaln_aa2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acctagttgttgagaagtaacttacttttgccttttttttttcctttcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGCGAGTTGGTACCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgtgagtttactggtaatatcttttgatcagagaaagaggttgaagacaca Alignment from Spaln_nt2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acctagttgttgagaagtaacttacttttgccttttttttttcctttcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGCGAGTTGGTACCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgtgagtttactggtaatatcttttgatcagagaaagaggttgaagacaca Alignment from Pairagon GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAG-GAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acctagttgttgagaagtaacttacttttgccttttttttttcctttcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGCGAGTTGGTAC-CTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgtgagtttactggtaatatcttttgatcagagaaagaggttgaagacaca Alignment from Exonerate_protein2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acctagttgttgagaagtaacttacttttgccttttttttttcctttcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGCGAGTTGGTACCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgtgagtttactggtaatatcttttgatcagagaaagaggttgaagacaca Alignment from Exonerate_coding2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acctagttgttgagaagtaacttacttttgccttttttttttcctttcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGCGAGTTGGTACCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgtgagtttactggtaatatcttttgatcagagaaagaggttgaagacaca Alignment from GeneWise GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acctagttgttgagaagtaacttacttttgccttttttttttcctttcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGCGAGTTGGTACCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgtgagtttactggtaatatcttttgatcagagaaagaggttgaagacaca #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATG-GATGGAGAGATGTTACAGAACATAAAATCAGGGCTG---CAAGCAGTGGACCGCTGGGCCTCTACAGACtg tgaccctcttcatattcttttggatcctgctgctatgccatctgggccagcTATTTGATTCACATTTACATG---GCTGGGTGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTTCAAGAGGCACCAGTAGTCCTTCACCTTCTTGGACTCAGCCAGGCACCTGGAATGCGATGGGG-AATGTTGCAAAATATAAAATCAGGACTAGAACAGGCAGTTGATCGCTGGGGCTCAACTGACtggtgagtggatgatacaccggtcccttagtaaattgttagttaccttattt Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTG---CAAGCAGTGGACCGCTGGGCCTCTACAGACtg tgaccctcttcatattcttttggatcctgctgctatgccatctgggccagcTATTTGATTCACATTTACATG---GCTGGGTGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTTCAAGAGGCACCAGTAGTCCTTCACCTTCTTGGACTCAGCCAGGCACCTGGAATGCGATGGGGAATGTTGCAAAATATAAAATCAGGACTAGAACAGGCAGTTGATCGCTGGGGCTCAACTGACtggtgagtggatgatacaccggtcccttagtaaattgttagttaccttattt Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTG---CAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgaccctcttcatattcttttggatcctgctgctatgccatctgggccagCTATTTGATTCACATTTACATG---GCTGGGTGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTTCAAGAGGCACCAGTAGTCCTTCACCTTCTTGGACTCAGCCAGGCACCTGGAATGCGATGGGGAATGTTGCAAAATATAAAATCAGGACTAGAACAGGCAGTTGATCGCTGGGGCTCAACTGACTGgtgagtggatgatacaccggtcccttagtaaattgttagttaccttattt Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATG-GATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAA---GCAGTGGACCGCTGGGCCTCTACAGACTG tgaccctcttcatattcttttggatcctgctgctatgccatctgggccagCTATTTGATTCACATTTACAT---GGCTGGGTGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTTCAAGAGGCACCAGTAGTCCTTCACCTTCTTGGACTCAGCCAGGCACCTGGAATGCGATGGGGA-ATGTTGCAAAATATAAAATCAGGACTAGAACAGGCAGTTGATCGCTGGGGCTCAACTGACTGgtgagtggatgatacaccggtcccttagtaaattgttagttaccttattt Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTG-----------------GGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCT---GCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgaccctcttcatattcttttggatcctgctgctatgccatctgggccagCTATTTGATTCACATTTACAT---GGCTGGGTGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTTCAAGAGGCACCAGTAGTCCTTCACCTTCTTGGACTCAGCCAGGCACCTGGAATGC----------------GATGGGGA-ATGTTGCAAAATATAAAATCAGGACTAGAACAGGCAGTTGATCGCTGGGGCTCAACTGACTGgtgagtggatgatacaccggtcccttagtaaattgttagttaccttattt Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTG---CAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgaccctcttcatattcttttggatcctgctgctatgccatctgggccagCTATTTGATTCACATTTACATG---GCTGGGTGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTTCAAGAGGCACCAGTAGTCCTTCACCTTCTTGGACTCAGCCAGGCACCTGGAATGCGATGGGGAATGTTGCAAAATATAAAATCAGGACTAGAACAGGCAGTTGATCGCTGGGGCTCAACTGACTGgtgagtggatgatacaccggtcccttagtaaattgttagttaccttattt Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTG---CAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgaccctcttcatattcttttggatcctgctgctatgccatctgggccagCTATTTGATTCACATTTACATG---GCTGGGTGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTTCAAGAGGCACCAGTAGTCCTTCACCTTCTTGGACTCAGCCAGGCACCTGGAATGCGATGGGGAATGTTGCAAAATATAAAATCAGGACTAGAACAGGCAGTTGATCGCTGGGGCTCAACTGACTGgtgagtggatgatacaccggtcccttagtaaattgttagttaccttattt Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTG---CAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgaccctcttcatattcttttggatcctgctgctatgccatctgggccagCTATTTGATTCACATTTACATG---GCTGGGTGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTTCAAGAGGCACCAGTAGTCCTTCACCTTCTTGGACTCAGCCAGGCACCTGGAATGCGATGGGGAATGTTGCAAAATATAAAATCAGGACTAGAACAGGCAGTTGATCGCTGGGGCTCAACTGACTGgtgagtggatgatacaccggtcccttagtaaattgttagttaccttattt #### Cabp2_ID287_2 --> 0 - 0 Original Alignment GAACGCTGGCAGTGGCCTGGATCCCCCCTA-GGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggggatattgttgtgtatttgtttaatagGTCCGCTGGCAATGGCCTGGATCCCCGTTACGGAGGCTCAC-TCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGACCCACATGTATATTCCTACGACCTACCATAGCTGCTACCCAGCTTgtacaaacattggctttatccacgattcatgttgggctggcactggacat Alignment from CESAR GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggggatattgttgtgtatttgtttaatagGTCCGCTGGCAATGGCCTGGATCCCCGTTACGGAGGCTCACTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGACCCACATGTATATTCCTACGACCTACCATAGCTGCTACCCAGCTTgtacaaacattggctttatccacgattcatgttgggctggcactggacat Alignment from Spaln_aa2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggggatattgttgtgtatttgtttaatagGTCCGCTGGCAATGGCCTGGATCCCCGTTACGGAGGCTCACTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGACCCACATGTATATTCCTACGACCTACCATAGCTGCTACCCAGCTTgtacaaacattggctttatccacgattcatgttgggctggcactggacat Alignment from Spaln_nt2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGG-GGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggggatattgttgtgtatttgtttaatagGTCCGCTGGCAATGGCCTGGATCCCCGTTACGGAGGCTCAC-TCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGACCCACATGTATATTCCTACGACCTACCATAGCTGCTACCCAGCTTgtacaaacattggctttatccacgattcatgttgggctggcactggacat Alignment from Pairagon GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggggatattgttgtgtatttgtttaatagGTCCGCTGGCAATGGCCTGGATCCCCGTTACGGAGGCTCACTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGACCCACATGTATATTCCTACGACCTACCATAGCTGCTACCCAGCTTgtacaaacattggctttatccacgattcatgttgggctggcactggacat Alignment from Exonerate_protein2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG gccatattgacacctatatgtggggatattgttgtgtatttgtttaatagGTCCGCTGGCAATGGCCTGGATCCCCGTTACGGAGGCTCACTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGACCCACATGTATATTCCTACGACCTACCATAGCTGCTACCCAGCTTGTACAAACATTGGCTTTATCCACGATTCATGttgggctggcactggacat Alignment from Exonerate_coding2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG gccatattgacacctatatgtggggatattgttgtgtatttgtttaatagGTCCGCTGGCAATGGCCTGGATCCCCGTTACGGAGGCTCACTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGACCCACATGTATATTCCTACGACCTACCATAGCTGCTACCCAGCTTGTACAAACATTGGCTTTATCCACGATTCATGttgggctggcactggacat Alignment from GeneWise GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG gccatattgacacctatatgtggggatattgttgtgtatttgtttaatagGTCCGCTGGCAATGGCCTGGATCCCCGTTACGGAGGCTCACTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGACCCACATGTATATTCCTACGACCTACCATAGCTGCTACCCAGCTTGTACAAACATTGGCTTTATCCACGATT---CATgttgggctggcactgga #### Cabp2_ID289_4 --> 2 - 1 Original Alignment agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTG-GGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa tcacccccttataacagctagggtggaatttttcattgtttttccattagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATCGGGTACCGAGAGCTGGGTGACTGCATGCAGACACTGCGGATACA-GCCCACAGAGATGGCGCTCATAGAGATATCACAACAGGTTagtaattgtgattcttgtggccagtgcacatagccccctggcacatgggtg Alignment from CESAR agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa tcacccccttataacagctagggtggaatttttcattgtttttccattagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATCGGGTACCGAGAGCTGGGTGACTGCATGCAGACACTGCGGATACAGCCCACAGAGATGGCGCTCATAGAGATATCACAACAGGTTagtaattgtgattcttgtggccagtgcacatagccccctggcacatgggtg Alignment from Spaln_aa2Genome ATCGAAGAGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ccttataacagctagggtggaatttttcattgtttttccatta gAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATCGGGTACCGAGAGCTGGGTGACTGCATGCAGACACTGCGGATACAGCCCACAGAGATGGCGCTCATAGAGATATCACAACAGGTTAgtaattgtgattcttgtggccagtgcacatagccccctggcacatgggtg Alignment from Spaln_nt2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAG tcacccccttataacagctagggtggaatttttcattgtttttccattagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATCGGGTACCGAGAGCTGGGTGACTGCATGCAGACACTGCGGATACAGCCCACAGAGATGGCGCTCATAGAGATATCACAACAGgttagtaattgtgattcttgtggccagtgcacatagccccctggcacatgggtg Alignment from Pairagon AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTG-GGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacagctagggtggaatttttcattgtttttccattagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATCGGGTACCGAGAGCTGGGTGACTGCATGCAGACACTGCGGATACA-GCCCACAGAGATGGCGCTCATAGAGATATCACAACAGGTTAgtaattgtgattcttgtggccagtgcacatagccccctggcacatgggtg Alignment from Exonerate_protein2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacagctagggtggaatttttcattgtttttccattagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATCGGGTACCGAGAGCTGGGTGACTGCATGCAGACACTGCGGATACAGCCCACAGAGATGGCGCTCATAGAGATATCACAACAGGTTAgtaattgtgattcttgtggccagtgcacatagccccctggcacatgggtg Alignment from Exonerate_coding2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacagctagggtggaatttttcattgtttttccattagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATCGGGTACCGAGAGCTGGGTGACTGCATGCAGACACTGCGGATACAGCCCACAGAGATGGCGCTCATAGAGATATCACAACAGGTTAgtaattgtgattcttgtggccagtgcacatagccccctggcacatgggtg Alignment from GeneWise CTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacagctagggtggaatttttcattgtttttccattagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATCGGGTACCGAGAGCTGGGTGACTGCATGCAGACACTGCGGATACAGCCCACAGAGATGGCGCTCATAGAGATATCACAACAGGTTAgtaattgtgattcttgtggccagtgcacatagccccctggcacatgggtg #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG caacaccctgcactaacctaagccctcaaagcctttttcttcctttgcaggtGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGCATGGGTC-CAAGCTACTAGTAGAGACAGTGGGCATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtaagccttaggtgctgggtggcagtagcaattcagtgtgtttttggaca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG caacaccctgcactaacctaagccctcaaagcctttttcttcctttgcaggtGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGCATGGGTCCAAGCTACTAGTAGAGACAGTGGGCATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtaagccttaggtgctgggtggcagtagcaattcagtgtgtttttggaca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG caacaccctgcactaacctaagccctcaaagcctttttcttcctttgcagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGCATGGGTCCAAGCTACTAGTAGAGACAGTGGGCATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtaagccttaggtgctgggtggcagtagcaattcagtgtgtttttggaca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG caacaccctgcactaacctaagccctcaaagcctttttcttcctttgcagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGCATGGGT-CCAAGCTACTAGTAGAGACAGTGGGCATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtaagccttaggtgctgggtggcagtagcaattcagtgtgtttttggaca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG caacaccctgcactaacctaagccctcaaagcctttttcttcctttgcagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGCATGGGT-CCAAGCTACTAGTAGAGACAGTGGGCATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtaagccttaggtgctgggtggcagtagcaattcagtgtgtttttggaca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG caacaccctgcactaacctaagccctcaaagcctttttcttcctttgcagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGCATGGGTCCAAGCTACTAGTAGAGACAGTGGGCATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtaagccttaggtgctgggtggcagtagcaattcagtgtgtttttggaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG caacaccctgcactaacctaagccctcaaagcctttttcttcctttgcagGTGGGGGGAAGGTTCACTTTGAAATCTTCATAGAGCTGCATGGGTCCAAGCTACTAGTAGAGACAGTGGGCATGATTGGGGAAAGAGAACTTAAAGACACTTTTAGGGAGgtaagccttaggtgctgggtggcagtagcaattcagtgtgtttttggaca #### Capn1_ID1369_7 --> 0 - 2 Original Alignment GTAACTTACCAGGGCCAG-CGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag aggggagtgtgttctgtctctggtgcaaaaacagtctctgctattttcagGTAACCTATCAGGGCCCGCCGAGTGAACA-TATTCGTATGTGGAATTCCTGGGGTCCAGTTGAGTGGAGAGGTCCTTGGAGTGACaggtaagcgaatgtaagcactttcatggagatggttttatgatcagactcct Alignment from CESAR GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag aggggagtgtgttctgtctctggtgcaaaaacagtctctgctattttcagGTAACCTATCAGGGCCCGCCGAGTGAACATATTCGTATGTGGAATTCCTGGGGTCCAGTTGAGTGGAGAGGTCCTTGGAGTGACaggtaagcgaatgtaagcactttcatggagatggttttatgatcagactcct Alignment from Spaln_aa2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG aggggagtgtgttctgtctctggtgcaaaaacagtctctgctattttcagGTAACCTATCAGGGCCCGCCGAGTGAACATATTCGTATGTGGAATTCCTGGGGTCCAGTTGAGTGGAGAGGTCCTTGGAGTGACAGgtaagcgaatgtaagcactttcatggagatggttttatgatcagactcct Alignment from Spaln_nt2Genome GTAACTTACCAGGGCCAGCGG-GTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG aggggagtgtgttctgtctctggtgcaaaaacagtctctgctattttcagGTAACCTATCAGGGCCCGCCGAGTGAACAT-ATTCGTATGTGGAATTCCTGGGGTCCAGTTGAGTGGAGAGGTCCTTGGAGTGACAGgtaagcgaatgtaagcactttcatggagatggttttatgatcagactcct Alignment from Pairagon GTAACTTACCAGGGCCAG-CGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG aggggagtgtgttctgtctctggtgcaaaaacagtctctgctattttcagGTAACCTATCAGGGCCCGCCGAGTGAACAT-ATTCGTATGTGGAATTCCTGGGGTCCAGTTGAGTGGAGAGGTCCTTGGAGTGACAGgtaagcgaatgtaagcactttcatggagatggttttatgatcagactcct Alignment from Exonerate_protein2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG aggggagtgtgttctgtctctggtgcaaaaacagtctctgctattttcagGTAACCTATCAGGGCCCGCCGAGTGAACATATTCGTATGTGGAATTCCTGGGGTCCAGTTGAGTGGAGAGGTCCTTGGAGTGACAGgtaagcgaatgtaagcactttcatggagatggttttatgatcagactcct Alignment from Exonerate_coding2genome aggggagtgtgttctgtctctggtgcaaaaacagtctctgctattttcaggtaacctatcagggcccgccgagtgaacatattcgtatgtggaattcctggggtccagttgagtggagaggtccttggagtgacaggtaagcgaatgtaagcactttcatggagatggttttatgatcagactcct Alignment from GeneWise GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG aggggagtgtgttctgtctctggtgcaaaaacagtctctgctattttcagGTAACCTATCAGGGCCCGCCGAGTGAACATATTCGTATGTGGAATTCCTGGGGTCCAGTTGAGTGGAGAGGTCCTTGGAGTGACAGgtaagcgaatgtaagcactttcatggagatggttttatgatcagactcct #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAG-AAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg tctaccatcgagtggtaattttgtaaagctccctttgtttctgcctgtagGTGGCAGCAAGACTCAGTGGCTGCCATTGGCATGGTCAGCAGGCATTGCCTTTACATCTGCAGGTAAAGCCATCCACAGTAGTGATGATGGTACTAGGATTATTGAAACAAAC-GGAAGAGGAGGAGAGTGTCCTTGTAGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAggtaaaatttaatgttgactcgcaagcccaaacggccttaatgagatgcat Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg tctaccatcgagtggtaattttgtaaagctccctttgtttctgcctgtagGTGGCAGCAAGACTCAGTGGCTGCCATTGGCATGGTCAGCAGGCATTGCCTTTACATCTGCAGGTAAAGCCATCCACAGTAGTGATGATGGTACTAGGATTATTGAAACAAACGGAAGAGGAGGAGAGTGTCCTTGTAGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAggtaaaatttaatgttgactcgcaagcccaaacggccttaatgagatgcat Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG tctaccatcgagtggtaattttgtaaagctccctttgtttctgcctgtagGTGGCAGCAAGACTCAGTGGCTGCCATTGGCATGGTCAGCAGGCATTGCCTTTACATCTGCAGGTAAAGCCATCCACAGTAGTGATGATGGTACTAGGATTATTGAAACAAACGGAAGAGGAGGAGAGTGTCCTTGTAGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtaaaatttaatgttgactcgcaagcccaaacggccttaatgagatgcat Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG tctaccatcgagtggtaattttgtaaagctccctttgtttctgcctgtagGTGGCAGCAAGACTCAGTGGCTGCCATTGGCATGGTCAGCAGGCATTGCCTTTACATCTGCAGGTAAAGCCATCCACAGTAGTGATGATGGTACTAGGATTATTGAAACAAACGGAAGAGGAGGAGAGTGTCCTTGTAGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtaaaatttaatgttgactcgcaagcccaaacggccttaatgagatgcat Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG tctaccatcgagtggtaattttgtaaagctccctttgtttctgcctgtagGTGGCAGCAAGACTCAGTGGCTGCCATTGGCATGGTCAGCAGGCATTGCCTTTACATCTGCAGGTAAAGCCATCCACAGTAGTGATGATGGTACTAGGATTATTGAAACAAACGGAAGAGGAGGAGAGTGTCCTTGTAGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtaaaatttaatgttgactcgcaagcccaaacggccttaatgagatgcat Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG tctaccatcgagtggtaattttgtaaagctccctttgtttctgcctgtagGTGGCAGCAAGACTCAGTGGCTGCCATTGGCATGGTCAGCAGGCATTGCCTTTACATCTGCAGGTAAAGCCATCCACAGTAGTGATGATGGTACTAGGATTATTGAAACAAACGGAAGAGGAGGAGAGTGTCCTTGTAGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtaaaatttaatgttgactcgcaagcccaaacggccttaatgagatgcat Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG tctaccatcgagtggtaattttgtaaagctccctttgtttctgcctgtagGTGGCAGCAAGACTCAGTGGCTGCCATTGGCATGGTCAGCAGGCATTGCCTTTACATCTGCAGGTAAAGCCATCCACAGTAGTGATGATGGTACTAGGATTATTGAAACAAACGGAAGAGGAGGAGAGTGTCCTTGTAGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtaaaatttaatgttgactcgcaagcccaaacggccttaatgagatgcat Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG tctaccatcgagtggtaattttgtaaagctccctttgtttctgcctgtagGTGGCAGCAAGACTCAGTGGCTGCCATTGGCATGGTCAGCAGGCATTGCCTTTACATCTGCAGGTAAAGCCATCCACAGTAGTGATGATGGTACTAGGATTATTGAAACAAACGGAAGAGGAGGAGAGTGTCCTTGTAGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtaaaatttaatgttgactcgcaagcccaaacggccttaatgagatgcat #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAG-GTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gcaaggagtaacaatatggaggatatgatcagttccacttccttccccaggcTTCCCTGGGGCAGAACGTCACCTTGT-TGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTggtgtgatattgcttccaaatgcccccttgtcctacaaaattggaacatgg Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gcaaggagtaacaatatggaggatatgatcagttccacttccttccccaggcTTCCCTGGGGCAGAACGTCACCTTGTTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTggtgtgatattgcttccaaatgcccccttgtcctacaaaattggaacatgg Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gcaaggagtaacaatatggaggatatgatcagttccacttccttccccagGCTTCCCTGGGGCAGAACGTCACCTTGTTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtgtgatattgcttccaaatgcccccttgtcctacaaaattggaacatgg Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAG-GTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gcaaggagtaacaatatggaggatatgatcagttccacttccttccccagGCTTCCCTGGGGCAGAACGTCACCTTGT-TGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtgtgatattgcttccaaatgcccccttgtcctacaaaattggaacatgg Alignment from Pairagon GCTGCCCTGGGGCAGAG-GTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gcaaggagtaacaatatggaggatatgatcagttccacttccttccccagGCTTCCCTGGGGCAGAACGTCACCTTGT-TGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtgtgatattgcttccaaatgcccccttgtcctacaaaattggaacatgg Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gcaaggagtaacaatatggaggatatgatcagttccacttccttccccagGCTTCCCTGGGGCAGAACGTCACCTTGTTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtgtgatattgcttccaaatgcccccttgtcctacaaaattggaacatgg Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gcaaggagtaacaatatggaggatatgatcagttccacttccttccccagGCTTCCCTGGGGCAGAACGTCACCTTGTTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtgtgatattgcttccaaatgcccccttgtcctacaaaattggaacatgg Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gcaaggagtaacaatatggaggatatgatcagttccacttccttccccagGCTTCCCTGGGGCAGAACGTCACCTTGTTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtgtgatattgcttccaaatgcccccttgtcctacaaaattggaacatgg #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATC-ACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccatttgcttcaatgataacttaactttgatgtctttatctcccacctagtATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGATCTTTACCCTCAATCCACAGCCA-CCTCACCCTCATGTTTACCTGCCACtgtaagatgcacaatggaagttggatacaattattctaaataggttaggtg Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccatttgcttcaatgataacttaactttgatgtctttatctcccacctagtATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGATCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACtgtaagatgcacaatggaagttggatacaattattctaaataggttaggtg Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatttgcttcaatgataacttaactttgatgtctttatctcccacctagTATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGATCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACTgtaagatgcacaatggaagttggatacaattattctaaataggttaggtg Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatttgcttcaatgataacttaactttgatgtctttatctcccacctagTATTTTGACTAGAGTCCAGGAAGTAGCTG---CCCTTAGTGGATCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACTgtaagatgcacaatggaagttggatacaattattctaaataggttaggtg Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCAT-CACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatttgcttcaatgataacttaactttgatgtctttatctcccacctagTATTTTGACTAGAGTCCAGGAAGTAGCTG---CCCTTAGTGGATCTTTACCCTCAATCCACAGCCA-CCTCACCCTCATGTTTACCTGCCACTgtaagatgcacaatggaagttggatacaattattctaaataggttaggtg Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatttgcttcaatgataacttaactttgatgtctttatctcccacctagTATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGATCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACTgtaagatgcacaatggaagttggatacaattattctaaataggttaggtg Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatttgcttcaatgataacttaactttgatgtctttatctcccacctagTATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGATCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACTgtaagatgcacaatggaagttggatacaattattctaaataggttaggtg Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatttgcttcaatgataacttaactttgatgtctttatctcccacctagTATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGATCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACTgtaagatgcacaatggaagttggatacaattattctaaataggttaggtg #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCA-GACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGCCT ttggactttcccttcgctatgttagatgttctttttttttctctctctagtcCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCACGATCCCAAGC-TTTCCAGAATGTCTTTACAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGggtgagatagcctaagtctccagccttacttctctccccaaacagctGCCT Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGCCT ttggactttcccttcgctatgttagatgttctttttttttctctctctagtcCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCACGATCCCAAGCTTTCCAGAATGTCTTTACAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGggtgagatagcctaagtctccaggccaatgtctcttgcttttcagctGCCT Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ttggactttcccttcgctatgttagatgttctttttttttctctctctagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCACGATCCCAAGCTTTCCAGAATGTCTTTACAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgagatagcctaagtctccagccttacttctctccccaaacagCTGCCT Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCA-GACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ttggactttcccttcgctatgttagatgttctttttttttctctctctagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCACGATCCCAAGC-TTTCCAGAATGTCTTTACAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgagatagcctaagtctccagccttacttctctccccaaacagCTGCCT Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCA-GACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAGG--------------------------------------------CGCCT ttggactttcccttcgctatgttagatgttctttttttttctctctctagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCACGATCCCAAGC-TTTCCAGAATGTCTTTACAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGGTGAGATAGCCTAAGTCTCCAGCCTTACTTCTCTCCCCAAACAGCTGCCT Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ttggactttcccttcgctatgttagatgttctttttttttctctctctagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCACGATCCCAAGCTTTCCAGAATGTCTTTACAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgagatagcctaagtctccagccttacttctctccccaaacagCTGCCT Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ttggactttcccttcgctatgttagatgttctttttttttctctctctagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCACGATCCCAAGCTTTCCAGAATGTCTTTACAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgagatagcctaagtctccagccttacttctctccccaaacagCTGCCT Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ttggactttcccttcgctatgttagatgttctttttttttctctctctagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCACGATCCCAAGCTTTCCAGAATGTCTTTACAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgagatagcctaagtctccagccttacttctctccccaaacagCTGCCT #### Cbwd1_ID5353_14 --> 0 - 1 Original Alignment GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGC-ATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtagtcctatgttgtcagctgaaccctgaatcctatgtatccagGGATTGGTGTCTATCAAAGTTAAGCCACATCAAATGATTGTGCAAGGTCATCCATG-TTTGTATGACTTAGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCTTGTCAGCTAGTTTTCATTggtaagtaacactaatgtactactgaatgtaccactaggttctgtgtctaa Alignment from CESAR GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtagtcctatgttgtcagctgaaccctgaatcctatgtatccagGGATTGGTGTCTATCAAAGTTAAGCCACATCAAATGATTGTGCAAGGTCATCCATGTTTGTATGACTTAGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCTTGTCAGCTAGTTTTCATTggtaagtaacactaatgtactactgaatgtaccactaggttctgtgtctaa Alignment from Spaln_aa2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctatgttgtcagctgaaccctgaatcctatgtatccagGGATTGGTGTCTATCAAAGTTAAGCCACATCAAATGATTGTGCAAGGTCATCCATGTTTGTATGACTTAGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCTTGTCAGCTAGTTTTCATTGgtaagtaacactaatgtactactgaatgtaccactaggttctgtgtctaa Alignment from Spaln_nt2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGG-CATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctatgttgtcagctgaaccctgaatcctatgtatccagGGATTGGTGTCTATCAAAGTTAAGCCACATCAAATGATTGTGCAAGGTCATCCATG-TTTGTATGACTTAGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCTTGTCAGCTAGTTTTCATTGgtaagtaacactaatgtactactgaatgtaccactaggttctgtgtctaa Alignment from Pairagon GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGG-CATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctatgttgtcagctgaaccctgaatcctatgtatccagGGATTGGTGTCTATCAAAGTTAAGCCACATCAAATGATTGTGCAAGGTCATCCATG-TTTGTATGACTTAGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCTTGTCAGCTAGTTTTCATTGgtaagtaacactaatgtactactgaatgtaccactaggttctgtgtctaa Alignment from Exonerate_protein2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctatgttgtcagctgaaccctgaatcctatgtatccagGGATTGGTGTCTATCAAAGTTAAGCCACATCAAATGATTGTGCAAGGTCATCCATGTTTGTATGACTTAGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCTTGTCAGCTAGTTTTCATTGgtaagtaacactaatgtactactgaatgtaccactaggttctgtgtctaa Alignment from Exonerate_coding2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctatgttgtcagctgaaccctgaatcctatgtatccagGGATTGGTGTCTATCAAAGTTAAGCCACATCAAATGATTGTGCAAGGTCATCCATGTTTGTATGACTTAGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCTTGTCAGCTAGTTTTCATTGgtaagtaacactaatgtactactgaatgtaccactaggttctgtgtctaa Alignment from GeneWise GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTGGTAG aattatgtagtcctatgttgtcagctgaaccctgaatcctatgtatccagGGATTGGTGTCTATCAAAGTTAAGCCACATCAAATGATTGTGCAAGGTCATCCATGTTTGTATGACTTAGAAGAGAGCCTTGTGAATTGGAAGGATGATGCAGCAAGGGCTTGTCAGCTAGTTTTCATTGGTAAgtaacactaatgtactactgaatgtaccactaggttctgtgtctaa #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAG-GTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG cttaatctcaggtgactgaatatctaagaggttgctactatctactgcagaGCCCAAATGTTACTGACTGAGCGTGACAC-AGGGTGTGGAGAGATCCAGGGAGAATGTGGGGAGCTGTGGGGATGTCTATCAAGAATAGAACTAGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGTGTGTGTGGGAGTCCAACCAGCAATTGGATTTGAGTGCATGTCACCTGACGCCACAATGTGAAgtggaggacaacaatgggtatataagccttcatacactaatagtcacaaa Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG cttaatctcaggtgactgaatatctaagaggttgctactatctactgcagaGCCCAAATGTTACTGACTGAGCGTGACACAGGGTGTGGAGAGATCCAGGGAGAATGTGGGGAGCTGTGGGGATGTCTATCAAGAATAGAACTAGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGTGTGTGTGGGAGTCCAACCAGCAATTGGATTTGAGTGCATGTCACCTGACGCCACAATGTGAAgtggaggacaacaatgggtatataagccttcatacactaatagtcacaaa Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG cttaatctcaggtgactgaatatctaagaggttgctactatctactgcagAGCCCAAATGTTACTGACTGAGCGTGACACAGGGTGTGGAGAGATCCAGGGAGAATGTGGGGAGCTGTGGGGATGTCTATCAAGAATAGAACTAGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGTGTGTGTGGGAGTCCAACCAGCAATTGGATTTGAGTGCATGTCACCTGACGCCACAATGTGAAgtggaggacaacaatgggtatataagccttcatacactaatagtcacaaa Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAG-GTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGA------GTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG cttaatctcaggtgactgaatatctaagaggttgctactatctactgcagAGCCCAAATGTTACTGACTGAGCGTGACACAGG-GTGTGGAGAGATCCAGGGAGAATGTGGGGAGCTGTGGGGATGTCTATCAAGAATAGAACTAGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGTGTGTGTGGGAGTCCAACCAGCAATTGGATTTGAGTGCATGTCACCTGACGCCACAATGTGAAgtggaggacaacaatgggtatataagccttcatacactaatagtcacaaa Alignment from Pairagon AGCTCAGATGCTACTGGCCGA-----------GGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG cttaatctcaggtgactgaatatctaagaggttgctactatctactgcagAGCCCAAATGTTACTGACTGAGCGTGACACAGGGTGT-----------GGAGAGATCCAGGGAGAATGTGGGGAGCTGTGGGGATGTCTATCAAGAATAGAACTAGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGTGTGTGTGGGAGTCCAACCAGCAATTGGATTTGAGTGCATGTCACCTGACGCCACAATGTGAAgtggaggacaacaatgggtatataagccttcatacactaatagtcacaaa Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG cttaatctcaggtgactgaatatctaagaggttgctactatctactgcagAGCCCAAATGTTACTGACTGAGCGTGACACAGGGTGTGGAGAGATCCAGGGAGAATGTGGGGAGCTGTGGGGATGTCTATCAAGAATAGAACTAGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGTGTGTGTGGGAGTCCAACCAGCAATTGGATTTGAGTGCATGTCACCTGACGCCACAATGTGAAgtggaggacaacaatgggtatataagccttcatacactaatagtcacaaa Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGC cttaatctcaggtgactgaatatctaagaggttgctactatctactgcagAGCCCAAATGTTACTGACTGAGCGTGACACAGGGTGTGGAGAGATCCAGGGAGAATGTGGGGAGCTGTGGGGATGTCTATCAAGAATAGAACTAGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGTGTGTGTGGGAGTCCAACCAGCAATTGGATTTGAGTGCATGTCACCTGACGCCACAATGTGAAGtggaggacaacaatgggtatataagccttcatacactaatagtcacaaa Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG cttaatctcaggtgactgaatatctaagaggttgctactatctactgcagAGCCCAAATGTTACTGACTGAGCGTGACACAGGGTGTGGAGAGATCCAGGGAGAATGTGGGGAGCTGTGGGGATGTCTATCAAGAATAGAACTAGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGTGTGTGTGGGAGTCCAACCAGCAATTGGATTTGAGTGCATGTCACCTGACGCCACAATGTGAAgtggaggacaacaatgggtatataagccttcatacactaatagtcacaaa #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAG-GAGCACAGCAGTCGCCTGCAG gagctaatagggctcacaacattaatatagaaataacatatcattttcagAATGCCACATTGGTGGCAGAGAAAGTGGCTCTGCAGGGACAATTGCAGCATCTCGAGGGCCAGCTGGGGAGCCTACATGGTCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAACGAGCACA-TAGTTGCTTGCAGgtactgttgggtgattgaatgggttgggtcatgcaccttgaaacaatgta Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gagctaatagggctcacaacattaatatagaaataacatatcattttcagAATGCCACATTGGTGGCAGAGAAAGTGGCTCTGCAGGGACAATTGCAGCATCTCGAGGGCCAGCTGGGGAGCCTACATGGTCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAACGAGCACATAGTTGCTTGCAGgtactgttgggtgattgaatgggttgggtcatgcaccttgaaacaatgta Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gagctaatagggctcacaacattaatatagaaataacatatcattttcagAATGCCACATTGGTGGCAGAGAAAGTGGCTCTGCAGGGACAATTGCAGCATCTCGAGGGCCAGCTGGGGAGCCTACATGGTCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAACGAGCACATAGTTGCTTGCAGgtactgttgggtgattgaatgggttgggtcatgcaccttgaaacaatgta Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAG-GAGCACAGCAGTCGCCTGCAG gagctaatagggctcacaacattaatatagaaataacatatcattttcagAATGCCACATTGGTGGCAGAGAAAGTGGCTCTGCAGGGACAATTGCAGCATCTCGAGGGCCAGCTGGGGAGCCTACATGGTCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAACGAGCACA-TAGTTGCTTGCAGgtactgttgggtgattgaatgggttgggtcatgcaccttgaaacaatgta Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAG-GAGCACAGCAGTCGCCTGCAG gagctaatagggctcacaacattaatatagaaataacatatcattttcagAATGCCACATTGGTGGCAGAGAAAGTGGCTCTGCAGGGACAATTGCAGCATCTCGAGGGCCAGCTGGGGAGCCTACATGGTCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAACGAGCACA-TAGTTGCTTGCAGgtactgttgggtgattgaatgggttgggtcatgcaccttgaaacaatgta Alignment from Exonerate_protein2genome GGACTGTGGAGACCCAGAATGGACGGCTC---ATCGAAGTGGAGCGAAATAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG GAGCTAATAGGGCTCACAACATTAATATAGAAATAACATATCATTTTCAGAATGCCACATTGGTGGCAGAGAAAGTGGCTCTGCAGGGACAATTGCAGCATCTCGAGGGCCAGCTGGGGAGCCTACATGGTCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAACGAGCACATAGTTGCTTGCAGgtactgttgggtgattgaatgggttgggtcatgcaccttgaaacaatgta Alignment from Exonerate_coding2genome GGACTGTGGAGACCCAGAATGGACGGCTC---ATCGAAGTGGAGCGAAATAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG GAGCTAATAGGGCTCACAACATTAATATAGAAATAACATATCATTTTCAGAATGCCACATTGGTGGCAGAGAAAGTGGCTCTGCAGGGACAATTGCAGCATCTCGAGGGCCAGCTGGGGAGCCTACATGGTCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAACGAGCACATAGTTGCTTGCAGgtactgttgggtgattgaatgggttgggtcatgcaccttgaaacaatgta Alignment from GeneWise --------------------------------------------------AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG GAGCTAATAGGGCTCACAACATTAATATAGAAATAACATATCATTTTCAGAATGCCACATTGGTGGCAGAGAAAGTGGCTCTGCAGGGACAATTGCAGCATCTCGAGGGCCAGCTGGGGAGCCTACATGGTCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAACGAGCACATAGTTGCTTGCAGgtactgttgggtgattgaatgggttgggtcatgcaccttgaaacaatgta #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTG-GAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg aggcctaatggacagacagctctggcacaattccatcatttgtttcttagGACCTGGACTCACTGCGGCATCAGTTGCGAACAGT-AGTGGAAGAGAATGTAGAGCTAGAGTTGGAACTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGggtactgtgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg aggcctaatggacagacagctctggcacaattccatcatttgtttcttagGACCTGGACTCACTGCGGCATCAGTTGCGAACAGTAGTGGAAGAGAATGTAGAGCTAGAGTTGGAACTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGggtactgtgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcacaattccatcatttgtttcttagGACCTGGACTCACTGCGGCATCAGTTGCGAACAGTAGTGGAAGAGAATGTAGAGCTAGAGTTGGAACTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtactgtgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcacaattccatcatttgtttcttagGACCTGGACTCACTGCGGCATCAGTTGCGAACAGTAGTGGAAGAGAATGTAGAGCTAGAGTTGGAACTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtactgtgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTG-GAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcacaattccatcatttgtttcttagGACCTGGACTCACTGCGGCATCAGTTGCGAACAG-TAGTGGAAGAGAATGTAGAGCTAGAGTTGGAACTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtactgtgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcacaattccatcatttgtttcttagGACCTGGACTCACTGCGGCATCAGTTGCGAACAGTAGTGGAAGAGAATGTAGAGCTAGAGTTGGAACTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtactgtgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcacaattccatcatttgtttcttagGACCTGGACTCACTGCGGCATCAGTTGCGAACAGTAGTGGAAGAGAATGTAGAGCTAGAGTTGGAACTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtactgtgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcacaattccatcatttgtttcttagGACCTGGACTCACTGCGGCATCAGTTGCGAACAGTAGTGGAAGAGAATGTAGAGCTAGAGTTGGAACTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtactgtgtagcagacaggatttggcaaggaacctttagtcttaagaaga #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCC-CACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tcagtgtaggagataatcatgtgttttgatctttgtttttctctccacagCGGCTGGTTGAACTGTTACTTGAGAGGGAGCCAGACCCACCCAC-GCTACCTGGGGCTCCTGCCAAAGCA------GAGGGTGTGTCCCACCATCTAGATCTGCAGTTAACCAATGCTAAGGCTCAGCTGAGATGCCTCAGGAGGGAAttgtgagtcaaccttgccacgaaagcctatcgattcttaagcctttggggat Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tcagtgtaggagataatcatgtgttttgatctttgtttttctctccacagCGGCTGGTTGAACTGTTACTTGAGAGGGAGCCAGACCCACCCACGCTACCTGGGGCTCCTGCCAAA------GCAGAGGGTGTGTCCCACCATCTAGATCTGCAGTTAACCAATGCTAAGGCTCAGCTGAGATGCCTCAGGAGGGAAttgtgagtcaaccttgccacgaaagcctatcgattcttaagcctttggggat Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tcagtgtaggagataatcatgtgttttgatctttgtttttctctccacagCGGCTGGTTGAACTGTTACTTGAGAGGGAGCCAGACCCACCCACGCTACCTGGGGCTCCTGCCAAA------GCAGAGGGTGTGTCCCACCATCTAGATCTGCAGTTAACCAATGCTAAGGCTCAGCTGAGATGCCTCAGGAGGGAATTgtgagtcaaccttgccacgaaagcctatcgattcttaagcctttggggat Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAG-CCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tcagtgtaggagataatcatgtgttttgatctttgtttttctctccacagCGGCTGGTTGAACTGTTACTTGAGAGGGAGCCAGACCCACCCAC-GCTACCTGGGGCTCCTGCCAA------AGCAGAGGGTGTGTCCCACCATCTAGATCTGCAGTTAACCAATGCTAAGGCTCAGCTGAGATGCCTCAGGAGGGAATTgtgagtcaaccttgccacgaaagcctatcgattcttaagcctttggggat Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAG-----CCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tcagtgtaggagataatcatgtgttttgatctttgtttttctctccacagCGGCTGGTTGAACTGTTACTTGAGAGGGAGCCAGACCCACCCAC-----GCTACCTGGGGCTCCTGCCAA------AGCAGAGGGTGTGTCCCACCATCTAGATCTGCAGTTAACCAATGCTAAGGCTCAGCTGAGATGCCTCAGGAGGGAATTgtgagtcaaccttgccacgaaagcctatcgattcttaagcctttggggat Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tcagtgtaggagataatcatgtgttttgatctttgtttttctctccacagCGGCTGGTTGAACTGTTACTTGAGAGGGAGCCAGACCCACCCACGCTACCTGGGGCTCCT------GCCAAAGCAGAGGGTGTGTCCCACCATCTAGATCTGCAGTTAACCAATGCTAAGGCTCAGCTGAGATGCCTCAGGAGGGAATTgtgagtcaaccttgccacgaaagcctatcgattcttaagcctttggggat Alignment from Exonerate_coding2genome tcagtgtaggagataatcatgtgttttgatctttgtttttctctccacagcggctggttgaactgttacttgagagggagccagacccacccacgctacctggggctcctgccaaagcagagggtgtgtcccaccatctagatctgcagttaaccaatgctaaggctcagctgagatgcctcaggagggaattgtgagtcaaccttgccacgaaagcctatcgattcttaagcctttggggat Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tcagtgtaggagataatcatgtgttttgatctttgtttttctctccacagCGGCTGGTTGAACTGTTACTTGAGAGGGAGCCAGACCCACCCACGCTACCTGGGGCTCCTGCCAAAGCA------GAGGGTGTGTCCCACCATCTAGATCTGCAGTTAACCAATGCTAAGGCTCAGCTGAGATGCCTCAGGAGGGAATTgtgagtcaaccttgccacgaaagcctatcgattcttaagcctttggggat #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGG-ATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct ggcctaattaagcattctatactgtaggtcttttgtttttctgtttttagatTATGCCTTTCTCAATTATGCACCCTCCTTAATAGCGGCCGCGTGTGTGGCCTTTTCCAGGCATTATACTCC-ACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGctgtgcgtagagccacacaattgaaatcagactgccagaagcagttctgcag Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct ggcctaattaagcattctatactgtaggtcttttgtttttctgtttttagatTATGCCTTTCTCAATTATGCACCCTCCTTAATAGCGGCCGCGTGTGTGGCCTTTTCCAGGCATTATACTCCACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGctgtgcgtagagccacacaattgaaatcagactgccagaagcagttctgcag Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT ggcctaattaagcattctatactgtaggtcttttgtttttctgtttttagATTATGCCTTTCTCAATTATGCACCCTCCTTAATAGCGGCCGCGTGTGTGGCCTTTTCCAGGCATTATACTCCACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgcgtagagccacacaattgaaatcagactgccagaagcagttctgcag Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT ggcctaattaagcattctatactgtaggtcttttgtttttctgtttttagATTATGCCTTTCTCAATTATGCACCCTCCTTAATAGCGGCCGCGTGTGTGGCCTTTTCCAGGCATTATACTCCACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgcgtagagccacacaattgaaatcagactgccagaagcagttctgcag Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGG-ATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT ggcctaattaagcattctatactgtaggtcttttgtttttctgtttttagATTATGCCTTTCTCAATTATGCACCCTCCTTAATAGCGGCCGCGTGTGTGGCCTTTTCCAGGCATTATACTCCA-CTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgcgtagagccacacaattgaaatcagactgccagaagcagttctgcag Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT ggcctaattaagcattctatactgtaggtcttttgtttttctgtttttagATTATGCCTTTCTCAATTATGCACCCTCCTTAATAGCGGCCGCGTGTGTGGCCTTTTCCAGGCATTATACTCCACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgcgtagagccacacaattgaaatcagactgccagaagcagttctgcag Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT ggcctaattaagcattctatactgtaggtcttttgtttttctgtttttagATTATGCCTTTCTCAATTATGCACCCTCCTTAATAGCGGCCGCGTGTGTGGCCTTTTCCAGGCATTATACTCCACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgcgtagagccacacaattgaaatcagactgccagaagcagttctgcag Alignment from GeneWise ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT ggcctaattaagcattctatactgtaggtcttttgtttttctgtttttagATTATGCCTTTCTCAATTATGCACCCTCCTTAATAGCGGCCGCGTGTGTGGCCTTTTCCAGGCATTATACTCCACTGTCTCCAACCTGGCCTACAAGACTACACTGTTTCACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATTGCTgtgcgtagagccacacaattgaaatcagactgccagaagcagttctgcag #### Ccs_ID664_4 --> 2 - 2 Original Alignment agAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAA-CTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATag atgtcctggaattttaatgacactacatttgctttcctcaacactctcagaaAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACCTATGCT-GATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATaggtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from CESAR agAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATag atgtcctggaattttaatgacactacatttgctttcctcaacactctcagaaAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACCTATGCTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATaggtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Spaln_aa2Genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACCTATGCTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Spaln_nt2Genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAAC-TCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACCTATGC-TGATGGAGGGTACAATTGATGGCTTAGA---TGGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Pairagon AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACCTATGCTGATGGAGGGTACAATTGATGGCTTAGA---TGGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Exonerate_protein2genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACCTATGCTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Exonerate_coding2genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAAT atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACCTATGCTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATaggtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from GeneWise AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACCTATGCTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc #### Cd274_ID6274_5 --> 2 - 1 Original Alignment tgAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGAT-ACAAGCTCAAAAAACCGAAATg gtttgtccttactaacattctaactcacattggtttttctgctgtttcagtgAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCATAAGCT-AAAAAACCGGAATggtaaggggatcaatgtacagaaattttggtgaccattaaacaccagatta Alignment from CESAR tgAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATg gtttgtccttactaacattctaactcacattggtttttctgctgtttcagtgAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCATAAGCTAAAAAACCGGAATggtaaggggatcaatgtacagaaattttggtgaccattaaacaccagatta Alignment from Spaln_aa2Genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATG gtttgtccttactaacattctaactcacattggtttttctgctgtttcagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCATAAGCTAAAAAACCGGAATGgtaaggggatcaatgtacagaaattttggtgaccattaaacaccagatta Alignment from Spaln_nt2Genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGAT-ACAAGCTCAAAAAACCGAAATG gtttgtccttactaacattctaactcacattggtttttctgctgtttcagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCATAAGCT-AAAAAACCGGAATGgtaaggggatcaatgtacagaaattttggtgaccattaaacaccagatta Alignment from Pairagon TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGAT-ACAAGCTCAAAAAACCGAAATG gtttgtccttactaacattctaactcacattggtttttctgctgtttcagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATCATAAGCT-AAAAAACCGGAATGgtaaggggatcaatgtacagaaattttggtgaccattaaacaccagatta Alignment from Exonerate_protein2genome gtttgtccttactaacattctaactcacattggtttttctgctgtttcagtgaggatgctggatgagaaatgcagtgttgagcatcataagctaaaaaaccggaatggtaaggggatcaatgtacagaaattttggtgaccattaaacaccagatta Alignment from Exonerate_coding2genome gtttgtccttactaacattctaactcacattggtttttctgctgtttcagtgaggatgctggatgagaaatgcagtgttgagcatcataagctaaaaaaccggaatggtaaggggatcaatgtacagaaattttggtgaccattaaacaccagatta Alignment from GeneWise gtttgtccttactaacattctaactcacattggtttttctgctgtttcagtgaggatgctggatgagaaatgcagtgttgagcatcataagctaaaaaaccggaatggtaaggggatcaatgtacagaaattttggtgaccattaaacaccagatta #### Cd5_ID2994_4 --> 2 - 1 Original Alignment GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACC-CCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtgagagacagagtttctgttttctcgtagcagaaCCCCAGAGAACTGCTCCTCCACCCACAACTGCTCCCATCCA-CACTGTACCGGAACCCACAggtgagtggatgcacaacaggaaaacaaagcagagaattacgttggtataa Alignment from CESAR GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggttgacgacagagtttctgttttctcgtagcagaaCCCCAGAGAACTGCTCCTCCACCCACAACTGCTCCCATCCACACTGTACCGGAACCCACAggtgagtggatgcacaacaggaaaacaaagcagagaattacgttggtataa Alignment from Spaln_aa2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagagacagagtttctgttttctcgtagcagAACCCCAGAGAACTGCTCCTCCACCCACAACTGCTCCCATCCACACTGTACCGGAACCCACAGgtgagtggatgcacaacaggaaaacaaagcagagaattacgttggtataa Alignment from Spaln_nt2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCAC-CCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagagacagagtttctgttttctcgtagcagAACCCCAGAGAACTGCTCCTCCACCCACAACTGCTCCCATCCA-CACTGTACCGGAACCCACAGgtgagtggatgcacaacaggaaaacaaagcagagaattacgttggtataa Alignment from Pairagon GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagagacagagtttctgttttctcgtagcagAACCCCAGAGAACTGCTCCTCCACCCACAACTGCTCCCATCCACACTGTACCGGAACCCACAGgtgagtggatgcacaacaggaaaacaaagcagagaattacgttggtataa Alignment from Exonerate_protein2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagagacagagtttctgttttctcgtagcagAACCCCAGAGAACTGCTCCTCCACCCACAACTGCTCCCATCCACACTGTACCGGAACCCACAGgtgagtggatgcacaacaggaaaacaaagcagagaattacgttggtataa Alignment from Exonerate_coding2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtgagagacagagtttctgttttctcgtagcagAACCCCAGAGAACTGCTCCTCCACCCACAACTGCTCCCATCCACACTGTACCGGAACCCACAGgtgagtggatgcacaacaggaaaacaaagcagagaattacgttggtataa Alignment from GeneWise GAGCCTGATCTGCCTA---------------------------------GAGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGGTGAGAGACAGAGTTTCTGTTTTCTCGTAGCAGAACCCCAGAGAACTGCTCCTCCACCCACAACTGCTCCCATCCACACTGTACCGGAACCCACAGgtgagtggatgcacaacaggaaaacaaagcagagaattacgttggtataa #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCC-ATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttgatccttctgtgagtccagtcacatttcatgctgtaaatcccatatagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCACATGAATATGT-TCATAAGTGGGAAATGTTGAAGAGGGCTGAGgtaagttggcacaaatgtaaaatctatccctacatgtttgcttgtataca Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttgatccttctgtgagtccagtcacatttcatgctgtaaatcccatatagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCACATGAATATGTTCATAAGTGGGAAATGTTGAAGAGGGCTGAGgtaagttggcacaaatgtaaaatctatccctacatgtttgcttgtataca Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttgatccttctgtgagtccagtcacatttcatgctgtaaatcccatatagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCACATGAATATGTTCATAAGTGGGAAATGTTGAAGAGGGCTGAGgtaagttggcacaaatgtaaaatctatccctacatgtttgcttgtataca Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttgatccttctgtgagtccagtcacatttcatgctgtaaatcccatatagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCACATGAATATGTTCATAAGTGGGAAATGTTGAAGAGGGCTGAGgtaagttggcacaaatgtaaaatctatccctacatgtttgcttgtataca Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGC-CATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttgatccttctgtgagtccagtcacatttcatgctgtaaatcccatatagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCACATGAATATGTT-CATAAGTGGGAAATGTTGAAGAGGGCTGAGgtaagttggcacaaatgtaaaatctatccctacatgtttgcttgtataca Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttgatccttctgtgagtccagtcacatttcatgctgtaaatcccatatagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCACATGAATATGTTCATAAGTGGGAAATGTTGAAGAGGGCTGAGgtaagttggcacaaatgtaaaatctatccctacatgtttgcttgtataca Alignment from Exonerate_coding2genome ttgatccttctgtgagtccagtcacatttcatgctgtaaatcccatataggttattgtggtgaggcagagaggaagtggccagatctttgcacatgaatatgttcataagtgggaaatgttgaagagggctgaggtaagttggcacaaatgtaaaatctatccctacatgtttgcttgtataca Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttgatccttctgtgagtccagtcacatttcatgctgtaaatcccatatagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCACATGAATATGTTCATAAGTGGGAAATGTTGAAGAGGGCTGAGgtaagttggcacaaatgtaaaatctatccctacatgtttgcttgtataca #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAA-ACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctgcactccccaatctctggctcttacagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGCACTTATGGGA-AATCATGAACCATGAGgtgagtctggaagacccagtgaccctggtattgtgaaggtcatctttata Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctgcactccccaatctctggctcttacagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGCACTTATGGGAAATCATGAACCATGAGgtgagtctggaagacccagtgaccctggtattgtgaaggtcatctttata Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctgcactccccaatctctggctcttacagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGCACTTATGGGAAATCATGAACCATGAGgtgagtctggaagacccagtgaccctggtattgtgaaggtcatctttata Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAA-ACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctgcactccccaatctctggctcttacagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGCACTTATGGGAA-ATCATGAACCATGAGgtgagtctggaagacccagtgaccctggtattgtgaaggtcatctttata Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCA--------AGATCATGAACCACGAG agtggtacctcctctacctctctgcactccccaatctctggctcttacagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGA--------GCACTTATGGGAAATCATGAACCATGAGgtgagtctggaagacccagtgaccctggtattgtgaaggtcatctttata Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctgcactccccaatctctggctcttacagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGCACTTATGGGAAATCATGAACCATGAGgtgagtctggaagacccagtgaccctggtattgtgaaggtcatctttata Alignment from Exonerate_coding2genome agtggtacctcctctacctctctgcactccccaatctctggctcttacaggtggactcatccgttccggtgggaactccagactacatctctcctgagatcctgcaggctatggaggaaggtaagggccactatggaccacaatttgattggtggtcactgggagtctgtgcctatgagctgctgtttggggaaacacccttttatgctgtatctctggtagagcacttatgggaaatcatgaaccatgaggtgagtctggaagacccagtgaccctggtattgtgaaggtcatctttata Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctgcactccccaatctctggctcttacagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGCACTTATGGGAAATCATGAACCATGAGgtgagtctggaagacccagtgaccctggtattgtgaaggtcatctttata #### Cdc42bpg_ID1578_8 --> 0 - 0 Original Alignment GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTG-CTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGCTTATGCC-TCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from CESAR GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGCTTATGCCTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Spaln_aa2Genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGCTTATGCCTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Spaln_nt2Genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGCTTATGCCTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Pairagon GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGCTTATGCCTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Exonerate_protein2genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGCTTATGCCTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Exonerate_coding2genome ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacaggaccatctccagtttcctgctgccgtcacagatgtgcctgctagtgcccgtgatctgatctgccagctgcttatgcctcaagaggagcagctaagccgtggtggactggatgacttccacaagcatgcgttctttgagggggtagactgggagagactcacaaccagcacagcaccatacatccctgagcttcgaggcccaatggacacttccaactttgatgtggacgatgacaccctcaaccgctcagtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from GeneWise GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGCTTATGCCTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCA-GCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagaaACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTCGTCCCAAACA-TCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagaaACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTCGTCCCAAACATCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTCGTCCCAAACATCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCA-GCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTCGTCCCAAACAT-CAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCC-AGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTCGTCCCAAACAT-CAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTCGTCCCAAACATCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Exonerate_coding2genome gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagaaactttgaaggacagtgaggcttctcttgcccaagctgatgggcctgatgctagaagccctcgtcccaaacatcagttacagcaggagaaggatcgccttcaacaggtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTCGTCCCAAACATCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGA-TTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gcacttgctgtctggaattggcaaaatattttttccctccactttttaaggATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTAC-GGCAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtaagtatcaagtatgacaaagccagggttgccaccactggcttgtgggt Alignment from CESAR gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gcacttgctgtctggaattggcaaaatattttttccctccactttttaaggATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACGGCAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtaagtatcaagtatgacaaagccagggttgccaccactggcttgtgggt Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gcacttgctgtctggaattggcaaaatattttttccctccactttttaagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACGGCAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtaagtatcaagtatgacaaagccagggttgccaccactggcttgtgggt Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gcacttgctgtctggaattggcaaaatattttttccctccactttttaagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACGGCAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtaagtatcaagtatgacaaagccagggttgccaccactggcttgtgggt Alignment from Pairagon GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCC-------------GATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gcacttgctgtctggaattggcaaaatattttttccctccactttttaagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACGGCAGTG-------------AACCAGCAGCTGAGTCGAGAACAGGAGTGGgtaagtatcaagtatgacaaagccagggttgccaccactggcttgtgggt Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gcacttgctgtctggaattggcaaaatattttttccctccactttttaagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACGGCAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtaagtatcaagtatgacaaagccagggttgccaccactggcttgtgggt Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gcacttgctgtctggaattggcaaaatattttttccctccactttttaagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACGGCAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtaagtatcaagtatgacaaagccagggttgccaccactggcttgtgggt Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG gcacttgctgtctggaattggcaaaatattttttccctccactttttaagGATCAGTGTTGGTAAAATGGAGGTTCTATGCCATCCTACGGCAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtaagtatcaagtatgacaaagccagggttgccaccactggcttgtgggt #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGT-GAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gaaaccattgggtaatgaggattaacatatgatttcttttccctctgtagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGCCGAACGGC-GGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTtggtatgtctacacagctggatggaaccagcgatactgtgggctgaagatta Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gaaaccattgggtaatgaggattaacatatgatttcttttccctctgtagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGCCGAACGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTtggtatgtctacacagctggatggaaccagcgatactgtgggcatatatttt Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacatatgatttcttttccctctgtagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGCCGAACGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtatgtctacacagctggatggaaccagcgatactgtgggctgaagatta Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGT-GAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacatatgatttcttttccctctgtagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGCCGAACGGC-GGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtatgtctacacagctggatggaaccagcgatactgtgggctgaagatta Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGG-TGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacatatgatttcttttccctctgtagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGCCGAACGGC-GGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtatgtctacacagctggatggaaccagcgatactgtgggctgaagatta Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacatatgatttcttttccctctgtagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGCCGAACGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtatgtctacacagctggatggaaccagcgatactgtgggctgaagatta Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaatgaggattaacatatgatttcttttccctctgtagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGCCGAACGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGgtatgtctacacagctggatggaaccagcgatactgtgggctgaagatta Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGG------------------------------------------------- gaaaccattgggtaatgaggattaacatatgatttcttttccctctgtagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGCCGAACGGCGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGTTGGTATGTCTACACAGCTGGATGGAACCAGCGATACTGTGGGCTGAAGATTA #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCT-GGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTCGGAGCAGAAG-AGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTCGGAGCAGAAGAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTCGGAGCAGAAGAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTCGGAGCAGAAGAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCT-GGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTCGGAGCAGAAG-AGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTCGGAGCAGAAGAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Exonerate_coding2genome taacacatacgtagtagctaagtttttctacctgcttttattttccttagaaagactttgctaaggacccaggtaattcagctgagggtccaaagtctcggagcagaagagagcttagaccagagggccggcgcagtctacgcatgggtgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTCGGAGCAGAAGAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTC-TCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcaggGATCCCCAGTTTCTCAGTGACCC-TGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcaggGATCCCCAGTTTCTCAGTGACCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTCTCAGTGACCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTCTCAGTGACCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Pairagon GGACCCCCAG-TTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTCTCAGTGA-CCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTCTCAGTGACCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTCTCAGTGACCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTCTCAGTGACCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc #### Cdc42bpg_ID1601_31 --> 2 - 0 Original Alignment gtTACACAGCACCC---------TACCTAACAGTGTTCAGTGAA-AACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaaccataggcctgccttccttccttgtctccaggtTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACCAATACCCTTG-TGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTATCACTCAAGAAAgtgagtgctagcgctggttgtcaaattagtacattgagtggaaagtgagg Alignment from CESAR gtTACACAGCACCCTAC---------CTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaaccataggcctgccttccttccttgtctccaggtTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACCAATACCCTTGTGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTATCACTCAAGAAAgtgagtgctagcgctggttgtcaaattagtacattgagtggacttgtgtt Alignment from Spaln_aa2Genome GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaaccataggcctgccttccttccttgtctccagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACCAATACCCTTGTGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTATCACTCAAGAAAgtgagtgctagcgctggttgtcaaattagtacattgagtggaaagtgagg Alignment from Spaln_nt2Genome GTTACACAGCACCCTAC---------CTAACAGTGTTCAGTGAA-AACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaaccataggcctgccttccttccttgtctccagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACCAATACCCTTG-TGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTATCACTCAAGAAAgtgagtgctagcgctggttgtcaaattagtacattgagtggaaagtgagg Alignment from Pairagon GTTACACAGCAC---------CCTACCTAACAGTGTTCAGTGA-AAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaaccataggcctgccttccttccttgtctccagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACCAATACCCTTG-TGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTATCACTCAAGAAAgtgagtgctagcgctggttgtcaaattagtacattgagtggaaagtgagg Alignment from Exonerate_protein2genome GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaaccataggcctgccttccttccttgtctccagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACCAATACCCTTGTGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTATCACTCAAGAAAgtgagtgctagcgctggttgtcaaattagtacattgagtggaaagtgagg Alignment from Exonerate_coding2genome GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaaccataggcctgccttccttccttgtctccagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACCAATACCCTTGTGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTATCACTCAAGAAAgtgagtgctagcgctggttgtcaaattagtacattgagtggaaagtgagg Alignment from GeneWise GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaaccataggcctgccttccttccttgtctccagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACCAATACCCTTGTGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTATCACTCAAGAAAgtgagtgctagcgctggttgtcaaattagtacattgagtggaaagtgagg #### Cdca5_ID1428_2 --> 2 - 0 Original Alignment ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCC-AAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG ccatgtacctggtgatgggttatttgacctttattaccgttatgttgtaggaCCAAGGACTTTACTAACTCAGCCTTCAGAGTCACTACAAACACA-GTCATGTTCAGACCTCACAAACTCATTTTCTGAAACCTGGCAACGGgtgagtactgacctccctggtctgaaagcagctgcatacaccacaatttc Alignment from CESAR ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG ccatgtacctggtgatgggttatttgacctttattaccgttatgttgtaggaCCAAGGACTTTACTAACTCAGCCTTCAGAGTCACTACAAACACAGTCATGTTCAGACCTCACAAACTCATTTTCTGAAACCTGGCAACGGgtgagtactgacctccctggtctgaaagcagctgcatacaccacaatttc Alignment from Spaln_aa2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG ccatgtacctggtgatgggttatttgacctttattaccgttatgttgtagGACCAAGGACTTTACTAACTCAGCCTTCAGAGTCACTACAAACACAGTCATGTTCAGACCTCACAAACTCATTTTCTGAAACCTGGCAACGGgtgagtactgacctccctggtctgaaagcagctgcatacaccacaatttc Alignment from Spaln_nt2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCG-TCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG ccatgtacctggtgatgggttatttgacctttattaccgttatgttgtagGACCAAGGACTTTACTAACTCAGCCTTCAGAGTCACTACAAAC-ACAGTCATGTTCAGACCTCACAAACTCATTTTCTGAAACCTGGCAACGGgtgagtactgacctccctggtctgaaagcagctgcatacaccacaatttc Alignment from Pairagon GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTC-----------------GTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG ccatgtacctggtgatgggttatttgacctttattaccgttatgttgtagGACCAAGGACTTTACTAACTCAGCCTTCAGAGTCACTACAAACACAGTCATGT-----------------TCAGACCTCACAAACTCATTTTCTGAAACCTGGCAACGGgtgagtactgacctccctggtctgaaagcagctgcatacaccacaatttc Alignment from Exonerate_protein2genome ccatgtacctggtgatgggttatttgacctttattaccgttatgttgtaggaccaaggactttactaactcagccttcagagtcactacaaacacagtcatgttcagacctcacaaactcattttctgaaacctggcaacgggtgagtactgacctccctggtctgaaagcagctgcatacaccacaatttc Alignment from Exonerate_coding2genome ccatgtacctggtgatgggttatttgacctttattaccgttatgttgtaggaccaaggactttactaactcagccttcagagtcactacaaacacagtcatgttcagacctcacaaactcattttctgaaacctggcaacgggtgagtactgacctccctggtctgaaagcagctgcatacaccacaatttc Alignment from GeneWise GGGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG ccatgtacctggtgatgggttatttgacctttattaccgttatgttgtaGGACCAAGGACTTTACTAACTCAGCCTTCAGAGTCACTACAAACACAGTCATGTTCAGACCTCACAAACTCATTTTCTGAAACCTGGCAACGGgtgagtactgacctccctggtctgaaagcagctgcatacaccacaatttc #### Cdca5_ID1429_3 --> 0 - 0 Original Alignment ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAG-ATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGCATAG-TGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from CESAR ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGCATAGTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Spaln_aa2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGCATAGTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Spaln_nt2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGCATAGTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Pairagon ACAACTCCAG------------------------------CGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagACAACACCAGGTCCTCACCCCACTCTGTAGATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGCATAGTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Exonerate_protein2genome ACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagatgACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGCATAGTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Exonerate_coding2genome cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagatgactcccactgtcccagttagaaaagccatcatcttgaaaaagcatagtgcacatgcagtcgaagtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from GeneWise ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGCATAGTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa #### Cdk2ap2_ID298_2 --> 2 - 0 Original Alignment ccGGGAGTGTCCCATCG-CCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgtgatgtaagtggatcttaatatgttcccagctGGTAGTGTCCCATTGCCCAT-AGGCTCAGTACCAGGGGCTGCTGCCCCTTTCAGACCG---TTCAATGACTTTGGTCCTCCCTCTATGGGTTATGTTAAAgtggggttgctaaaggagttactcaaggatgtggggcccaaacccctatt Alignment from CESAR ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgtgatgtaagtggatcttaatatgttcccagctGGTAGTGTCCCATTGCCCATAGGCTCAGTACCAGGGGCTGCTGCCCCTTTCAGACCG---TTCAATGACTTTGGTCCTCCCTCTATGGGTTATGTTAAAgtggggttgctaaaggagttactcaaggatgtggggcccaaacccctatt Alignment from Spaln_aa2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgtgatgtaagtggatcttaatatgttcccagCTGGTAGTGTCCCATTGCCCATAGGCTCAGTACCAGGGGCTGCTGCCCCTTTCAGACCG---TTCAATGACTTTGGTCCTCCCTCTATGGGTTATGTTAAAgtggggttgctaaaggagttactcaaggatgtggggcccaaacccctatt Alignment from Spaln_nt2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgtgatgtaagtggatcttaatatgttcccagCTGGTAGTGTCCCATTGCCCATAGGCTCAGTACCAGGGGCTGCTGCCCCTTTCAGACC---GTTCAATGACTTTGGTCCTCCCTCTATGGGTTATGTTAAAgtggggttgctaaaggagttactcaaggatgtggggcccaaacccctatt Alignment from Pairagon CCTACAGCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGT------------------------------------------------------ atgcccaatctaaaagtctgtgatgtaagtggatcttaatatgttcccag-------CTGGTAGTGTCCCATTGCCCATAGGCTCAGTACCAGGGGCTGCTGCCCCTTTCAGACC---GTTCAATGACTTTGGTCCTCCCTCTATGGGTTATGTTAAAGTGGGGTTGCTAAAGGAGTTACTCAAGGATGTGGGGCCCAAACCCCTATT Alignment from Exonerate_protein2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgtgatgtaagtggatcttaatatgttcccagCTGGTAGTGTCCCATTGCCCATAGGCTCAGTACCAGGGGCTGCTGCCCCTTTCAGACCG---TTCAATGACTTTGGTCCTCCCTCTATGGGTTATGTTAAAgtggggttgctaaaggagttactcaaggatgtggggcccaaacccctatt Alignment from Exonerate_coding2genome GCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgtgatgtaagtggatcttaatatgttcccaGCTGGTAGTGTCCCATTGCCCATAGGCTCAGTACCAGGGGCTGCTGCCCCTTTCAGACCG---TTCAATGACTTTGGTCCTCCCTCTATGGGTTATGTTAAAgtggggttgctaaaggagttactcaaggatgtggggcccaaacccctatt Alignment from GeneWise CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgtgatgtaagtggatcttaatatgttcccagCTGGTAGTGTCCCATTGCCCATAGGCTCAGTACCAGGGGCTGCTGCCCCTTTCAGACCG---TTCAATGACTTTGGTCCTCCCTCTATGGGTTATGTTAAAgtggggttgctaaaggagttactcaaggatgtggggcccaaacccctatt #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGAC-CTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gcccaaacccctattgggggtatttgagaaacttcttgttcatgtcacagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCCTGCTGT-TGTTATAGAGGAGATGGGCAAGGAAATCCGACCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtgagtgcatccaagggtaagctatgacaggacagcataattggaaaagt Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gcccaaacccctattgggggtatttgagaaacttcttgttcatgtcacagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCCTGCTGTTGTTATAGAGGAGATGGGCAAGGAAATCCGACCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtgagtgcatccaagggtaagctatgacaggacagcataattggaaaagt Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gcccaaacccctattgggggtatttgagaaacttcttgttcatgtcacagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCCTGCTGTTGTTATAGAGGAGATGGGCAAGGAAATCCGACCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcatccaagggtaagctatgacaggacagcataattggaaaagt Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gcccaaacccctattgggggtatttgagaaacttcttgttcatgtcacagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCCTGCTGTTGTTATAGAGGAGATGGGCAAGGAAATCCGACCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcatccaagggtaagctatgacaggacagcataattggaaaagt Alignment from Pairagon ----------------------------------------------ACAGGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGA-CCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG GCCCAAACCCCTATTGGGGGTATTTGAGAAACTTCTTGTTCATGTCACAGGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCCTGCTGT-TGTTATAGAGGAGATGGGCAAGGAAATCCGACCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcatccaagggtaagctatgacaggacagcataattggaaaagt Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gcccaaacccctattgggggtatttgagaaacttcttgttcatgtcacagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCCTGCTGTTGTTATAGAGGAGATGGGCAAGGAAATCCGACCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcatccaagggtaagctatgacaggacagcataattggaaaagt Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gcccaaacccctattgggggtatttgagaaacttcttgttcatgtcacagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCCTGCTGTTGTTATAGAGGAGATGGGCAAGGAAATCCGACCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcatccaagggtaagctatgacaggacagcataattggaaaagt Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gcccaaacccctattgggggtatttgagaaacttcttgttcatgtcacagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCCTGCTGTTGTTATAGAGGAGATGGGCAAGGAAATCCGACCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcatccaagggtaagctatgacaggacagcataattggaaaagt #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCA-ACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa ttggccatctcaataggtagatacccgagtgtcctctctctctgccctagGGATTGAGCAAATCACACCTCTC-GGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtgagttaatatattttataaccattcttggtgcctctcatatgcaccca Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa ttggccatctcaataggtagatacccgagtgtcctctctctctgccctagGGATTGAGCAAATCACACCTCTCGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtgagttaatatattttataaccattcttggtgcctctcatatgcaccca Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaataggtagatacccgagtgtcctctctctctgccctagGGATTGAGCAAATCACACCTCTCGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtgagttaatatattttataaccattcttggtgcctctcatatgcaccca Alignment from Spaln_nt2Genome GGACTGAGTAAATCA-ACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaataggtagatacccgagtgtcctctctctctgccctagGGATTGAGCAAATCACACCTC-TCGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtgagttaatatattttataaccattcttggtgcctctcatatgcaccca Alignment from Pairagon GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaataggtagatacccgagtgtcctctctctctgccctagGGATTGAGCAAATCACACCTCTCGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtgagttaatatattttataaccattcttggtgcctctcatatgcaccca Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaataggtagatacccgagtgtcctctctctctgccctagGGATTGAGCAAATCACACCTCTCGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtgagttaatatattttataaccattcttggtgcctctcatatgcaccca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaataggtagatacccgagtgtcctctctctctgccctagGGATTGAGCAAATCACACCTCTCGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtgagttaatatattttataaccattcttggtgcctctcatatgcaccca #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATAT-AGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttttcaaaagtctgaactttatagttccttttacctgttctcttccccagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATCAGGCCTT-TTTGCATCATCTACAGCCATTTACCtggtaagtcagtgctatttgttgttggggagaactcccagttaaatgaggta Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttttcaaaagtctgaactttatagttccttttacctgttctcttccccagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATCAGGCCTTTTTGCATCATCTACAGCCATTTACCtggtaagtcagtgctatttgttgttggggagaactcccagttaaatgaggta Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaagtctgaactttatagttccttttacctgttctcttccccagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATCAGGCCTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgctatttgttgttggggagaactcccagttaaatgaggta Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaagtctgaactttatagttccttttacctgttctcttccccagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATCAGGCCTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgctatttgttgttggggagaactcccagttaaatgaggta Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaagtctgaactttatagttccttttacctgttctcttccccagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATCAGGCCTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgctatttgttgttggggagaactcccagttaaatgaggta Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaagtctgaactttatagttccttttacctgttctcttccccagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATCAGGCCTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgctatttgttgttggggagaactcccagttaaatgaggta Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaagtctgaactttatagttccttttacctgttctcttccccagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATCAGGCCTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgctatttgttgttggggagaactcccagttaaatgaggta Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttttcaaaagtctgaactttatagttccttttacctgttctcttccccagGCACCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTTGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATCAGGCCTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgctatttgttgttggggagaactcccagttaaatgaggta #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCA-GCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa cattcatgtcctgcctaatgctgtttcttcatgttttcatctcattttagccACAAGTTTGTCGTCCACCCCAGGCCCTGCAGGTCCATCAGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTTCAACTCGCCTCCT-TACATATGCTGCAGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGagtaagtatcgtagtcattagcatgtttggccagacacaagtgaaactact Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa cattcatgtcctgcctaatgctgtttcttcatgttttcatctcattttagccACAAGTTTGTCGTCCACCCCAGGCCCTGCAGGTCCATCAGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTTCAACTCGCCTCCTTACATATGCTGCAGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGagtaagtatcgtagtcattagcatgtttggccagacacaagtgaaactact Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcatgtcctgcctaatgctgtttcttcatgttttcatctcattttagCCACAAGTTTGTCGTCCACCCCAGGCCCTGCAGGTCCATCAGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTTCAACTCGCCTCCTTACATATGCTGCAGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtaagtatcgtagtcattagcatgtttggccagacacaagtgaaactact Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcatgtcctgcctaatgctgtttcttcatgttttcatctcattttagCCACAAGTTTGTCGTCCACCCCAGGCCCTGCAGGTCCATCAGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTTCAACTCGCCTCCTTACATATGCTGCAGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtaagtatcgtagtcattagcatgtttggccagacacaagtgaaactact Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcatgtcctgcctaatgctgtttcttcatgttttcatctcattttagCCACAAGTTTGTCGTCCACCCCAGGCCCTGCAGGTCCATCAGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTTCAACTCGCCTCCTTACATATGCTGCAGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtaagtatcgtagtcattagcatgtttggccagacacaagtgaaactact Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcatgtcctgcctaatgctgtttcttcatgttttcatctcattttagCCACAAGTTTGTCGTCCACCCCAGGCCCTGCAGGTCCATCAGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTTCAACTCGCCTCCTTACATATGCTGCAGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtaagtatcgtagtcattagcatgtttggccagacacaagtgaaactact Alignment from Exonerate_coding2genome cattcatgtcctgcctaatgctgtttcttcatgttttcatctcattttagccacaagtttgtcgtccaccccaggccctgcaggtccatcagggccaccagctccccgagggccccctggggtttcaactcgcctccttacatatgctgcagaaaacagtgataacttccgatgtgagctgattagttacctcacgagtaagtatcgtagtcattagcatgtttggccagacacaagtgaaactact Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA cattcatgtcctgcctaatgctgtttcttcatgttttcatctcattttagCCACAAGTTTGTCGTCCACCCCAGGCCCTGCAGGTCCATCAGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTTCAACTCGCCTCCTTACATATGCTGCAGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACGAgtaagtatcgtagtcattagcatgtttggccagacacaagtgaaactact #### Col17a1_ID10282_40 --> 2 - 1 Original Alignment aaACCTTCTTCACTGGCCCTCCAGGTCCA-CCCGGCCCCCCAGGTCCCAAGGGAGACCAAg agcaaatgttaagtcctaagcaacctgcactgcttctttccttcccgcagtaACATTCTTTAGGGGCCCTCCAGGTCCACCCTGGCCCCC-AGGTCCAAAAGGGGACCAAggtgagcaggtgacccgaaagctgccaagtgtgatcactagtatgagacta Alignment from CESAR aaACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg agcaaatgttaagtcctaagcaacctgcactgcttctttccttcccgcagtaACATTCTTTAGGGGCCCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAAGGGGACCAAggtgagcaggtgacccgaaagctgccaagtgtgatcactagtatgagacta Alignment from Spaln_aa2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agcaaatgttaagtcctaagcaacctgcactgcttctttccttcccgcagTAACATTCTTTAGGGGCCCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAAGGGGACCAAGgtgagcaggtgacccgaaagctgccaagtgtgatcactagtatgagacta Alignment from Spaln_nt2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agcaaatgttaagtcctaagcaacctgcactgcttctttccttcccgcagTAACATTCTTTAGGGGCCCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAAGGGGACCAAGgtgagcaggtgacccgaaagctgccaagtgtgatcactagtatgagacta Alignment from Pairagon AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agcaaatgttaagtcctaagcaacctgcactgcttctttccttcccgcagTAACATTCTTTAGGGGCCCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAAGGGGACCAAGgtgagcaggtgacccgaaagctgccaagtgtgatcactagtatgagacta Alignment from Exonerate_protein2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agcaaatgttaagtcctaagcaacctgcactgcttctttccttcccgcagTAACATTCTTTAGGGGCCCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAAGGGGACCAAGgtgagcaggtgacccgaaagctgccaagtgtgatcactagtatgagacta Alignment from Exonerate_coding2genome agcaaatgttaagtcctaagcaacctgcactgcttctttccttcccgcagtaacattctttaggggccctccaggtccaccctggcccccaggtccaaaaggggaccaaggtgagcaggtgacccgaaagctgccaagtgtgatcactagtatgagacta Alignment from GeneWise AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agcaaatgttaagtcctaagcaacctgcactgcttctttccttcccgcagTAACATTCTTTAGGGGCCCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAAGGGGACCAAGgtgagcaggtgacccgaaagctgccaagtgtgatcactagtatgagacta #### Col17a1_ID10283_39 --> 2 - 1 Original Alignment ggGAAGGCGTACCAGGCCCACCC-GGGCCACCAGGATCCTTCCTGACTGACTCAg attgtcaatagtgagggtaatatgacgttttttgtttgtttgttttttaggtGAGGGTGTGCCAGGTCCACCTCGGGCCTC-AGGATCTTTTTTGACTGATTCTggtgagtatgtccatcagctctgctctgatttggccagaaaatcatgcata Alignment from CESAR ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg attgtcaatagtgagggtaatatgacgttttttgtttgtttgttttttaggtGAGGGTGTGCCAGGTCCACCTCGGGCCTCAGGATCTTTTTTGACTGATTCTggtgagtatgtccatcagctctgctctgatttggccagaaaatcatgcata Alignment from Spaln_aa2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacgttttttgtttgtttgttttttagGTGAGGGTGTGCCAGGTCCACCTCGGGCCTCAGGATCTTTTTTGACTGATTCTGgtgagtatgtccatcagctctgctctgatttggccagaaaatcatgcata Alignment from Spaln_nt2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacgttttttgtttgtttgttttttagGTGAGGGTGTGCCAGGTCCACCTCGGGCCTCAGGATCTTTTTTGACTGATTCTGgtgagtatgtccatcagctctgctctgatttggccagaaaatcatgcata Alignment from Pairagon GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacgttttttgtttgtttgttttttagGTGAGGGTGTGCCAGGTCCACCTCGGGCCTCAGGATCTTTTTTGACTGATTCTGgtgagtatgtccatcagctctgctctgatttggccagaaaatcatgcata Alignment from Exonerate_protein2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacgttttttgtttgtttgttttttagGTGAGGGTGTGCCAGGTCCACCTCGGGCCTCAGGATCTTTTTTGACTGATTCTGgtgagtatgtccatcagctctgctctgatttggccagaaaatcatgcata Alignment from Exonerate_coding2genome attgtcaatagtgagggtaatatgacgttttttgtttgtttgttttttaggtgagggtgtgccaggtccacctcgggcctcaggatcttttttgactgattctggtgagtatgtccatcagctctgctctgatttggccagaaaatcatgcata Alignment from GeneWise GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacgttttttgtttgtttgttttttagGTGAGGGTGTGCCAGGTCCACCTCGGGCCTCAGGATCTTTTTTGACTGATTCTGgtgagtatgtccatcagctctgctctgatttggccagaaaatcatgcata #### Col17a1_ID10284_38 --> 2 - 1 Original Alignment ggCCTTCCATCCCAGGC-CCGCCAGGACCCAGAGGTCCACCAg ctgcaataataatggagggagaatcacacgtaaaattgttctgtcgctagggCCTTCTACTCCAGGCCCCACCAG-ACCCCAAAGTCCACCAggtaagtgattgaaagggatgtgaggatgaaggccatgttcaacaggaggt Alignment from CESAR ggCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAg ctgcaataataatggagggagaatcacacgtaaaattgttctgtcgctagggCCTTCTACTCCAGGCCCCACCAGACCCCAAAGTCCACCAggtaagtgattgaaagggatgtgaggatgaaggccatgttcaacaggaggt Alignment from Spaln_aa2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG ctgcaataataatggagggagaatcacacgtaaaattgttctgtcgctagGGCCTTCTACTCCAGGCCCCACCAGACCCCAAAGTCCACCAGgtaagtgattgaaagggatgtgaggatgaaggccatgttcaacaggaggt Alignment from Spaln_nt2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG ctgcaataataatggagggagaatcacacgtaaaattgttctgtcgctagGGCCTTCTACTCCAGGCCCCACCAGACCCCAAAGTCCACCAGgtaagtgattgaaagggatgtgaggatgaaggccatgttcaacaggaggt Alignment from Pairagon GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG ctgcaataataatggagggagaatcacacgtaaaattgttctgtcgctagGGCCTTCTACTCCAGGCCCCACCAGACCCCAAAGTCCACCAGgtaagtgattgaaagggatgtgaggatgaaggccatgttcaacaggaggt Alignment from Exonerate_protein2genome ctgcaataataatggagggagaatcacacgtaaaattgttctgtcgctagggccttctactccaggccccaccagaccccaaagtccaccaggtaagtgattgaaagggatgtgaggatgaaggccatgttcaacaggaggt Alignment from Exonerate_coding2genome ctgcaataataatggagggagaatcacacgtaaaattgttctgtcgctagggccttctactccaggccccaccagaccccaaagtccaccaggtaagtgattgaaagggatgtgaggatgaaggccatgttcaacaggaggt Alignment from GeneWise GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG ctgcaataataatggagggagaatcacacgtaaaattgttctgtcgctagGGCCTTCTACTCCAGGCCCCACCAGACCCCAAAGTCCACCAGgtaagtgattgaaagggatgtgaggatgaaggccatgttcaacaggaggt #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCCCCTGGCCCA-CCTGGCCCACGAGGGCCACCAg atgaaggggctacttgaatttgttcttgctgtctcttcctttcctgaaagaaGGTGTTGGTTTACATGGCCCCCCTGGCCCCCTCTGGCC-GCGAGGAGCACCAggtatgtcctcactgcaataataatggagggagaatcacagttgcttccct Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg atgaaggggctacttgaatttgttcttgctgtctcttcctttcctgaaagaaGGTGTTGGTTTACATGGCCCCCCTGGCCCCCTCTGGCCGCGAGGAGCACCAggtatgtcctcactgcaataataatggagggagaatcacacgtaaaattgt Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG atgaaggggctacttgaatttgttcttgctgtctcttcctttcctgaaagAAGGTGTTGGTTTACATGGCCCCCCTGGCCCCCTCTGGCCGCGAGGAGCACCAGgtatgtcctcactgcaataataatggagggagaatcacagttgcttccct Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG atgaaggggctacttgaatttgttcttgctgtctcttcctttcctgaaagAAGGTGTTGGTTTACATGGCCCCCCTGGCCCCCTCTGGCCGCGAGGAGCACCAGgtatgtcctcactgcaataataatggagggagaatcacagttgcttccct Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG atgaaggggctacttgaatttgttcttgctgtctcttcctttcctgaaagAAGGTGTTGGTTTACATGGCCCCCCTGGCCCCCTCTGGCCGCGAGGAGCACCAGgtatgtcctcactgcaataataatggagggagaatcacagttgcttccct Alignment from Exonerate_protein2genome atgaaggggctacttgaatttgttcttgctgtctcttcctttcctgaaagaaggtgttggtttacatggcccccctggccccctctggccgcgaggagcaccaggtatgtcctcactgcaataataatggagggagaatcacagttgcttccct Alignment from Exonerate_coding2genome atgaaggggctacttgaatttgttcttgctgtctcttcctttcctgaaagaaggtgttggtttacatggcccccctggccccctctggccgcgaggagcaccaggtatgtcctcactgcaataataatggagggagaatcacagttgcttccct Alignment from GeneWise AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG atgaaggggctacttgaatttgttcttgctgtctcttcctttcctgaaagAAGGTGTTGGTTTACATGGCCCCCCTGGCCCCCTCTGGCCGCGAGGAGCACCAGgtatgtcctcactgcaataataatggagggagaatcacagttgcttccct #### Col17a1_ID10301_21 --> 2 - 1 Original Alignment gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGA-CCAAAGGGACAAAAAGGCAGCATTg tcttctatgtaagggaaaatcagagtggcttcctgacttttgttctgtaggtATCCCAGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCCAAAGGGAC-GAAAGGCAGCATTggtgagtgtaaatctcccctatatacatgttcgtttgttcccttcctaaat Alignment from CESAR gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg tcttctatgtaagggaaaatcagagtggcttcctgacttttgttctgtaggtATCCCAGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCCAAAGGGACGAAAGGCAGCATTggtgagtgtaaatctcccctatatacatgttcgtttgttcccttcctaaat Alignment from Spaln_aa2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tcttctatgtaagggaaaatcagagtggcttcctgacttttgttctgtagGTATCCCAGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCCAAAGGGACGAAAGGCAGCATTGgtgagtgtaaatctcccctatatacatgttcgtttgttcccttcctaaat Alignment from Spaln_nt2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACC-AAAGGGACAAAAAGGCAGCATTG tcttctatgtaagggaaaatcagagtggcttcctgacttttgttctgtagGTATCCCAGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCCAAAGGGAC-GAAAGGCAGCATTGgtgagtgtaaatctcccctatatacatgttcgtttgttcccttcctaaat Alignment from Pairagon GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tcttctatgtaagggaaaatcagagtggcttcctgacttttgttctgtagGTATCCCAGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCCAAAGGGACGAAAGGCAGCATTGgtgagtgtaaatctcccctatatacatgttcgtttgttcccttcctaaat Alignment from Exonerate_protein2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tcttctatgtaagggaaaatcagagtggcttcctgacttttgttctgtagGTATCCCAGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCCAAAGGGACGAAAGGCAGCATTGgtgagtgtaaatctcccctatatacatgttcgtttgttcccttcctaaat Alignment from Exonerate_coding2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tcttctatgtaagggaaaatcagagtggcttcctgacttttgttctgtagGTATCCCAGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCCAAAGGGACGAAAGGCAGCATTGgtgagtgtaaatctcccctatatacatgttcgtttgttcccttcctaaat Alignment from GeneWise TCAAGGACCTAAAGGA---GACCGAGGCCTTCCTGGG------ACCCCAGGTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG TCTTCTATGTAAGGGAAAATCAGAGTGGCTTCCTGACTTTTGTTCTGTAGGTATCCCAGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCCAAAGGGACGAAAGGCAGCATTGgtgagtgtaaatctcccctatatacatgttcgtttgttcccttcctaaat #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGG-CACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCCATCCTACTG-CCAAATTGTGATTCTTGGTGCTggtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC---AAGCGC---GTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCCATCCTACTGCCAAATTGTGATTCTTGGTGCTggtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTG---ACCCCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCCATCCTACTGCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA---AGCGCG---TGGGCATTATCACCTGGC-ACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGA---CCCCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCCATCCTACTG-CCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAA----------------------------------------------TGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGA---CCCCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATAC----------------------------------------AATTAAACGACATCTGGGTATTACTACTTGGCCATCCTACTGCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCCATCCTACTGCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCCATCCTACTGCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCCATCCTACTGCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc #### Coro1b_ID359_9 --> 0 - 0 Original Alignment TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCC-ACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ccaagatgtaacattggtatgtcttaatcctgacagcctgtcctacccagTCTGACCTCTACCAAGATGATCTGTACCCT---------GTGCCCGAGGCACTGCTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCTAATCCAAATTTTATCCCACTGCAAGAAGCCTACATACCAAGTAAACAACATGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTCACAGCTACAG-AATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgtaaggcagtctttaaagatctgttgctcaggcactgagaagatgccctg Alignment from CESAR TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ccaagatgtaacattggtatgtcttaatcctgacagcctgtcctacccagTCTGACCTCTACCAAGATGATCTGTACCCT---------GTGCCCGAGGCACTGCTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCTAATCCAAATTTTATCCCACTGCAAGAAGCCTACATACCAAGTAAACAACATGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTCACAGCTACAGAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgtaaggcagtctttaaagatctgttgctcaggcactgagaagatgccctg Alignment from Spaln_aa2Genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ccaagatgtaacattggtatgtcttaatcctgacagcctgtcctacccagTCTGACCTCTACCAAGATGATCTGTACCCT---------GTGCCCGAGGCACTGCTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCTAATCCAAATTTTATCCCACTGCAAGAAGCCTACATACCAAGTAAACAACATGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTCACAGCTACAGAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgtaaggcagtctttaaagatctgttgctcaggcactgagaagatgccctg Alignment from Spaln_nt2Genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTC-CACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ccaagatgtaacattggtatgtcttaatcctgacagcctgtcctacccagTCTGACCTCTACCAAGATGATCTGTACCCT---------GTGCCCGAGGCACTGCTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCTAATCCAAATTTTATCCCACTGCAAGAAGCCTACATACCAAGTAAACAACATGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTCACAGCTACAG-AATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgtaaggcagtctttaaagatctgttgctcaggcactgagaagatgccctg Alignment from Pairagon TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTC-CACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ccaagatgtaacattggtatgtcttaatcctgacagcctgtcctacccagTCTGACCTCTACCAAGATGATCTGTACCCT---------GTGCCCGAGGCACTGCTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCTAATCCAAATTTTATCCCACTGCAAGAAGCCTACATACCAAGTAAACAACATGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTCACAGCTACAG-AATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgtaaggcagtctttaaagatctgttgctcaggcactgagaagatgccctg Alignment from Exonerate_protein2genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ccaagatgtaacattggtatgtcttaatcctgacagcctgtcctacccagTCTGACCTCTACCAAGATGATCTGTACCCT---------GTGCCCGAGGCACTGCTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCTAATCCAAATTTTATCCCACTGCAAGAAGCCTACATACCAAGTAAACAACATGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTCACAGCTACAGAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgtaaggcagtctttaaagatctgttgctcaggcactgagaagatgccctg Alignment from Exonerate_coding2genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ccaagatgtaacattggtatgtcttaatcctgacagcctgtcctacccagTCTGACCTCTACCAAGATGATCTGTACCCT---------GTGCCCGAGGCACTGCTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCTAATCCAAATTTTATCCCACTGCAAGAAGCCTACATACCAAGTAAACAACATGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTCACAGCTACAGAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgtaaggcagtctttaaagatctgttgctcaggcactgagaagatgccctg Alignment from GeneWise TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ccaagatgtaacattggtatgtcttaatcctgacagcctgtcctacccagTCTGACCTCTACCAAGATGATCTGTACCCTGTG---------CCCGAGGCACTGCTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCTAATCCAAATTTTATCCCACTGCAAGAAGCCTACATACCAAGTAAACAACATGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTCACAGCTACAGAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgtaaggcagtctttaaagatctgttgctcaggcactgagaagatgccctg #### Cpsf7_ID2863_3 --> 0 - 2 Original Alignment TGGACCACAGACCAGCAGCTGATCCAG-GTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg ctgccaagtttgacctgtcatctgatcttccatattctgtttgctgatagTGGACTACAGATCAGCAACTGATTCAGCGTTATCCACT-TATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAACCGGGCTAATGGCCCATCTAAGgggtaaaaatcaaaactgtgggggaacccttggcctatcctttgagtgaaca Alignment from CESAR TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg ctgccaagtttgacctgtcatctgatcttccatattctgtttgctgatagTGGACTACAGATCAGCAACTGATTCAGCGTTATCCACTTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAACCGGGCTAATGGCCCATCTAAGgggtaaaaatcaaaactgtgggggaacccttggcctatcctttgagtgaaca Alignment from Spaln_aa2Genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgacctgtcatctgatcttccatattctgtttgctgatagTGGACTACAGATCAGCAACTGATTCAGCGTTATCCACTTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAACCGGGCTAATGGCCCATCTAAGGGgtaaaaatcaaaactgtgggggaacccttggcctatcctttgagtgaaca Alignment from Spaln_nt2Genome TGGACCACAGACCAGCAGCTGATCCAG-GTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgacctgtcatctgatcttccatattctgtttgctgatagTGGACTACAGATCAGCAACTGATTCAGCGTTATCCACT-TATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAACCGGGCTAATGGCCCATCTAAGGGgtaaaaatcaaaactgtgggggaacccttggcctatcctttgagtgaaca Alignment from Pairagon TGGACCACAGACCAGCAGCTGATCCAG-GTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgacctgtcatctgatcttccatattctgtttgctgatagTGGACTACAGATCAGCAACTGATTCAGCGTTATCCACT-TATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAACCGGGCTAATGGCCCATCTAAGGGgtaaaaatcaaaactgtgggggaacccttggcctatcctttgagtgaaca Alignment from Exonerate_protein2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgacctgtcatctgatcttccatattctgtttgctgatagTGGACTACAGATCAGCAACTGATTCAGCGTTATCCACTTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAACCGGGCTAATGGCCCATCTAAGGGgtaaaaatcaaaactgtgggggaacccttggcctatcctttgagtgaaca Alignment from Exonerate_coding2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgacctgtcatctgatcttccatattctgtttgctgatagTGGACTACAGATCAGCAACTGATTCAGCGTTATCCACTTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAACCGGGCTAATGGCCCATCTAAGGGgtaaaaatcaaaactgtgggggaacccttggcctatcctttgagtgaaca Alignment from GeneWise TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgacctgtcatctgatcttccatattctgtttgctgatagTGGACTACAGATCAGCAACTGATTCAGCGTTATCCACTTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAACCGGGCTAATGGCCCATCTAAGGGgtaaaaatcaaaactgtgggggaacccttggcctatcctttgagtgaaca #### Crtac1_ID8462_10 --> 2 - 0 Original Alignment ggGGCGTAGTGACCGACTTCGATGGTGATGGG-ATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatagcctgctgctcaccccccaaattatagggGGTGTGGTGACTGATTTTGATGGGGATGGGCATGCTGG-TTTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggtaacacttttacccctatatgagaatgcaggtactacaggacaga Alignment from CESAR ggGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatagcctgctgctcaccccccaaattatagggGGTGTGGTGACTGATTTTGATGGGGATGGGCATGCTGGTTTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggtaacacttttacccctatatgagaatgcaggtactacaggacaga Alignment from Spaln_aa2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatagcctgctgctcaccccccaaattatagGGGGTGTGGTGACTGATTTTGATGGGGATGGGCATGCTGGTTTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggtaacacttttacccctatatgagaatgcaggtactacaggacaga Alignment from Spaln_nt2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGG-ATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatagcctgctgctcaccccccaaattatagGGGGTGTGGTGACTGATTTTGATGGGGATGGGCATGCTGG-TTTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggtaacacttttacccctatatgagaatgcaggtactacaggacaga Alignment from Pairagon GGGGCGTAGTGACCGACTTCGATGGTGATGGG-ATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatagcctgctgctcaccccccaaattatagGGGGTGTGGTGACTGATTTTGATGGGGATGGGCATGCTGG-TTTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggtaacacttttacccctatatgagaatgcaggtactacaggacaga Alignment from Exonerate_protein2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatagcctgctgctcaccccccaaattatagGGGGTGTGGTGACTGATTTTGATGGGGATGGGCATGCTGGTTTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggtaacacttttacccctatatgagaatgcaggtactacaggacaga Alignment from Exonerate_coding2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatagcctgctgctcaccccccaaattatagGGGGTGTGGTGACTGATTTTGATGGGGATGGGCATGCTGGTTTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggtaacacttttacccctatatgagaatgcaggtactacaggacaga Alignment from GeneWise GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttcctcgcccaaatagtgatagcctgctgctcaccccccaaattatagGGGGTGTGGTGACTGATTTTGATGGGGATGGGCATGCTGGTTTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCTGTGGGAATCAGgtaggtaacacttttacccctatatgagaatgcaggtactacaggacaga #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGAC-AAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcaggTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACCAAGGTGTCTG-TGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcaggTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACCAAGGTGTCTGTGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACCAAGGTGTCTGTGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACCAAGGTGTCTGTGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGA-CAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACCAAGGTGTCTG-TGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACCAAGGTGTCTGTGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Exonerate_coding2genome GCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAGGTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG CCGCACGCATACTACACTACCTGCATGTGCCTGGGGTTCCGCTGC---AGGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACCAAGGTGTCTGTGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAGACCCTCAGGAAGGACCTCCTGCAGCCC ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACCAAGGTGTCTGTGATGTGCGAGTGAACCCTGAGGTGAGTAGCCATAGGCAACTAGAGATTcaaatgggactgggccaaaagag #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTC-ACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcatcatcagagtgttcgtgtgtttaactgagtttgtgctctttctgcagagCGCCTTGGTCCTCCATGTGATGTCCACAGCAG-CTGCAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgagttgaggcctcgattttctgggaaagcctgcctatatccgacataa Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcatcatcagagtgttcgtgtgtttaactgagtttgtgctctttctgcagagCGCCTTGGTCCTCCATGTGATGTCCACAGCAGCTGCAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgagttgaggcctcgattttctgggaaagcctgcctatatccgacataa Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcatcatcagagtgttcgtgtgtttaactgagtttgtgctctttctgcagAGCGCCTTGGTCCTCCATGTGATGTCCACAGCAGCTGCAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgagttgaggcctcgattttctgggaaagcctgcctatatccgacataa Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcatcatcagagtgttcgtgtgtttaactgagtttgtgctctttctgcagAGCGCCTTGGTCCTCCATGTGATGTCCACAGCAGCTGCAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgagttgaggcctcgattttctgggaaagcctgcctatatccgacataa Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcatcatcagagtgttcgtgtgtttaactgagtttgtgctctttctgcagAGCGCCTTGGTCCTCCATGTGATGTCCACAGCAGCTGCAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgagttgaggcctcgattttctgggaaagcctgcctatatccgacataa Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcatcatcagagtgttcgtgtgtttaactgagtttgtgctctttctgcagAGCGCCTTGGTCCTCCATGTGATGTCCACAGCAGCTGCAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgagttgaggcctcgattttctgggaaagcctgcctatatccgacataa Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcatcatcagagtgttcgtgtgtttaactgagtttgtgctctttctgcagAGCGCCTTGGTCCTCCATGTGATGTCCACAGCAGCTGCAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgagttgaggcctcgattttctgggaaagcctgcctatatccgacataa Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcatcatcagagtgttcgtgtgtttaactgagtttgtgctctttctgcagAGCGCCTTGGTCCTCCATGTGATGTCCACAGCAGCTGCAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgagttgaggcctcgattttctgggaaagcctgcctatatccgacataa #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGC-TCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tgaactaaggcttgactggagaaagtgatgttcgtttctctcttctttagagTTTCGAAATGTTACCCTTGGCCTCACTCCTAC-ATTGTTAGACAAAGGTCCCCTACCCCAGgtcagcgggagaatgtcacatagggagaaagtaaatccaaaatttctact Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tgaactaaggcttgactggagaaagtgatgttcgtttctctcttctttagagTTTCGAAATGTTACCCTTGGCCTCACTCCTACATTGTTAGACAAAGGTCCCCTACCCCAGgtcagcgggagaatgtcacatagggagaaagtaaatccaaaatttctact Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tgaactaaggcttgactggagaaagtgatgttcgtttctctcttctttagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTACATTGTTAGACAAAGGTCCCCTACCCCAGgtcagcgggagaatgtcacatagggagaaagtaaatccaaaatttctact Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGC-TCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tgaactaaggcttgactggagaaagtgatgttcgtttctctcttctttagAGTTTCGAAATGTTACCCTTGGCCTCACTCC-TACATTGTTAGACAAAGGTCCCCTACCCCAGgtcagcgggagaatgtcacatagggagaaagtaaatccaaaatttctact Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTTC------------CATTGTTGGACAAGGATCCCCTGCCCCAG tgaactaaggcttgactggagaaagtgatgttcgtttctctcttctttagAGTTTCGAAATGTTAC------------CCTTGGCCTCACTCCTACATTGTTAGACAAAGGTCCCCTACCCCAGgtcagcgggagaatgtcacatagggagaaagtaaatccaaaatttctact Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tgaactaaggcttgactggagaaagtgatgttcgtttctctcttctttagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTACATTGTTAGACAAAGGTCCCCTACCCCAGgtcagcgggagaatgtcacatagggagaaagtaaatccaaaatttctact Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tgaactaaggcttgactggagaaagtgatgttcgtttctctcttctttagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTACATTGTTAGACAAAGGTCCCCTACCCCAGgtcagcgggagaatgtcacatagggagaaagtaaatccaaaatttctact Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG tgaactaaggcttgactggagaaagtgatgttcgtttctctcttctttagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTACATTGTTAGACAAAGGTCCCCTACCCCAGgtcagcgggagaatgtcacatagggagaaagtaaatccaaaatttctact #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAAT-CCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG taggatggtgccctgatgcccgttctgtttgcctcttcactcctctatagagGAAGAAATTCATACCATTGGCCTGATCCCCTTTAT-ACAGAAGCAATCTGGCAGGAAAATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGCTGAAGAATGAAgtaagtgtagcttgaaatcgggagggggttcaaggcctattagagctcac Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG taggatggtgccctgatgcccgttctgtttgcctcttcactcctctatagagGAAGAAATTCATACCATTGGCCTGATCCCCTTTATACAGAAGCAATCTGGCAGGAAAATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGCTGAAGAATGAAgtaagtgtagcttgaaatcgggagggggttcaaggcctattagagctcac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG taggatggtgccctgatgcccgttctgtttgcctcttcactcctctatagAGGAAGAAATTCATACCATTGGCCTGATCCCCTTTATACAGAAGCAATCTGGCAGGAAAATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGCTGAAGAATGAAgtaagtgtagcttgaaatcgggagggggttcaaggcctattagagctcac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGT------GAAGAACCAG taggatggtgccctgatgcccgttctgtttgcctcttcactcctctatagAGGAAGAAATTCATACCATTGGCCTGATCCCCTTTATACAGAAGCAATCTGGCAGGAAAATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGCTGAAGAATGAAgtaagtgtagcttgaaatcgggagggggttcaaggcctattagagctcac Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAG------TGAAGAACCAG taggatggtgccctgatgcccgttctgtttgcctcttcactcctctatagAGGAAGAAATTCATACCATTGGCCTGATCCCCTTTATACAGAAGCAATCTGGCAGGAAAATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGCTGAAGAATGAAgtaagtgtagcttgaaatcgggagggggttcaaggcctattagagctcac Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAAC taggatggtgccctgatgcccgttctgtttgcctcttcactcctctatagAGGAAGAAATTCATACCATTGGCCTGATCCCCTTTATACAGAAGCAATCTGGCAGGAAAATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGCTGaagaatgaagtaagtgtagcttgaaatcgggagggggttcaaggcctattagagctcac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAAC taggatggtgccctgatgcccgttctgtttgcctcttcactcctctatagAGGAAGAAATTCATACCATTGGCCTGATCCCCTTTATACAGAAGCAATCTGGCAGGAAAATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGCTGaagaatgaagtaagtgtagcttgaaatcgggagggggttcaaggcctattagagctcac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG taggatggtgccctgatgcccgttctgtttgcctcttcactcctctatagAGGAAGAAATTCATACCATTGGCCTGATCCCCTTTATACAGAAGCAATCTGGCAGGAAAATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGCTGAAGAATGAAgtaagtgtagcttgaaatcgggagggggttcaaggcctattagagctcac #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTG-GGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg tcagacaaactcctccatagggttcctttccatattcccctccattacagagCTCTCACATTGTGGCAAAGAGGATAAAGCCTGTTTGCGGTGGAT-GCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtgagttgtgccgaatccacctgaggatgatagtggctaccatggtgttg Alignment from CESAR agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg tcagacaaactcctccatagggttcctttccatattcccctccattacagagCTCTCACATTGTGGCAAAGAGGATAAAGCCTGTTTGCGGTGGATGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtgagttgtgccgaatccacctgaggatgatagtggctaccatggtgttg Alignment from Spaln_aa2Genome GAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTG tcagacaaactcctccatagggttcctttccatattcccctccattacagAGCTCTCACATTGTGGCAAAGAGGATAAAGCCTGTTTGCGGTGGATGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagttgtgccgaatccacctgaggatgatagtggctaccatggtgttg Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTG-GGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaactcctccatagggttcctttccatattcccctccattacagAGCTCTCACATTGTGGCAAAGAGGATAAAGCCTGTTTGCGGTGGA-TGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagttgtgccgaatccacctgaggatgatagtggctaccatggtgttg Alignment from Pairagon AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTG-GGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaactcctccatagggttcctttccatattcccctccattacagAGCTCTCACATTGTGGCAAAGAGGATAAAGCCTGTTTGCGGTGGA-TGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagttgtgccgaatccacctgaggatgatagtggctaccatggtgttg Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaactcctccatagggttcctttccatattcccctccattacagAGCTCTCACATTGTGGCAAAGAGGATAAAGCCTGTTTGCGGTGGATGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagttgtgccgaatccacctgaggatgatagtggctaccatggtgttg Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaactcctccatagggttcctttccatattcccctccattacagAGCTCTCACATTGTGGCAAAGAGGATAAAGCCTGTTTGCGGTGGATGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagttgtgccgaatccacctgaggatgatagtggctaccatggtgttg Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG tcagacaaactcctccatagggttcctttccatattcccctccattacagAGCTCTCACATTGTGGCAAAGAGGATAAAGCCTGTTTGCGGTGGATGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagttgtgccgaatccacctgaggatgatagtggctaccatggtgttg #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCC-ATTAACGCCTTCGGCATGCAG accataagtaacttaggtaacacaacttttttttttttaattctttccagagACAGCAGCCTGGCTAGCCCAAAAAGGTCCTATTTCAGTTGCCCATCAATG-CTTTGGAATGCAGgtaatgatgtttcatttgaatccagccacagggcttctggcctccctgtg Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG accataagtaacttaggtaacacaacttttttttttttaattctttccagagACAGCAGCCTGGCTAGCCCAAAAAGGTCCTATTTCAGTTGCCCATCAATGCTTTGGAATGCAGgtaatgatgtttcatttgaatccagccacagggcttctggcctccctgtg Alignment from Spaln_aa2Genome AAGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCA accataagtaacttaggtaacacaacttttttttttttaattctttccagAGACAGCAGCCTGGCTAGCCCAAAAAGGTCCTATTTCAGTTGCCCATCAATGCTTTGGAATGCAGgtaatgatgtttcatttgaatccagccacagggcttctggcctccctgtg Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG accataagtaacttaggtaacacaacttttttttttttaattctttccagAGACAGCAGCCTGGCTAGCCCAAAAAGGTCCTATTTCAGTTGCCCATCAATGCTTTGGAATGCAGgtaatgatgtttcatttgaatccagccacagggcttctggcctccctgtg Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG accataagtaacttaggtaacacaacttttttttttttaattctttccagAGACAGCAGCCTGGCTAGCCCAAAAAGGTCCTATTTCAGTTGCCCATCAATGCTTTGGAATGCAGgtaatgatgtttcatttgaatccagccacagggcttctggcctccctgtg Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG accataagtaacttaggtaacacaacttttttttttttaattctttccagAGACAGCAGCCTGGCTAGCCCAAAAAGGTCCTATTTCAGTTGCCCATCAATGCTTTGGAATGCAGgtaatgatgtttcatttgaatccagccacagggcttctggcctccctgtg Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAGTTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTG accataagtaacttaggtaacacaacttttttttttttaattctttccagAGACAGCAGCCTGGCTAGCCCAAAAAGGTCCTATTTCAGTTGCCCATCAATGCTTTGGAATGCAGGTAATGATGTTTCATTTGAATCCAGCCACAGGGCTTCTGGCCTCCCTGTG Alignment from GeneWise AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG accataagtaacttaggtaacacaacttttttttttttaattctttccagAGACAGCAGCCTGGCTAGCCCAAAAAGGTCCTATTTCAGTTGCCCATCAATGCTTTGGAATGCAGgtaatgatgtttcatttgaatccagccacagggcttctggcctccctgtg #### Ctsf_ID685_13 --> 2 - 0 Original Alignment gcTCTAACATTCCTTACTGGGCC-ATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACT cttaagctctggtaattccttactattcagctctatctcccactccccaggtTCTAACATCCCTTACTGGGCACATCAAGAATA-CTGGGGAAGTGACTGGGGTGAGGAGgtaaacttgggtctgtaatcatagttcattttcaaagGGGTACTATTACT Alignment from CESAR gcTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACT cttaagctctggtaattccttactattcagctctatctcccactccccaggtTCTAACATCCCTTACTGGGCACATCAAGAATACTGGGGAAGTGACTGGGGTGAGGAGgtaaacttgggtctgcttttaattttattttacccagGGGTACTATTACT Alignment from Spaln_aa2Genome CGCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGA GGGTTACTACTACT cttaagctctggtaattccttactattcagctctatctcccactccccagGTTCTAACATCCCTTACTGGGCACATCAAGAATACTGGGGAAGTGACTGGGGTGAGGAGgtaaacttgggtctgtaatcatagttcattttcaaagGGGTACTATTACT Alignment from Spaln_nt2Genome GCTCTAACATTCCTTACTGGGC-CATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACT cttaagctctggtaattccttactattcagctctatctcccactccccagGTTCTAACATCCCTTACTGGGCACATCAAGAATA-CTGGGGAAGTGACTGGGGTGAGGAGgtaaacttgggtctgtaatcatagttcattttcaaagGGGTACTATTACT Alignment from Pairagon GCTCTAACATTCCTTACTGGGC-CATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACT cttaagctctggtaattccttactattcagctctatctcccactccccagGTTCTAACATCCCTTACTGGGCACATCAAGAATA-CTGGGGAAGTGACTGGGGTGAGGAGgtaaacttgggtctgtaatcatagttcattttcaaagGGGTACTATTACT Alignment from Exonerate_protein2genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACT cttaagctctggtaattccttactattcagctctatctcccactccccagGTTCTAACATCCCTTACTGGGCACATCAAGAATACTGGGGAAGTGACTGGGGTGAGGAGgtaaacttgggtctgtaatcatagttcattttcaaagGGGTACTATTACT Alignment from Exonerate_coding2genome GGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACT cttaagctctggtaattccttactattcagctctatctcccactccccaggttctaacatcccttactgGGCACATCAAGAATACTGGGGAAGTGACTGGGGTGAGGAGgtaaacttgggtctgtaatcatagttcattttcaaagGGGTACTATTACT Alignment from GeneWise GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GGTTACTACTACT cttaagctctggtaattccttactattcagctctatctcccactccccagGTTCTAACATCCCTTACTGGGCACATCAAGAATACTGGGGAAGTGACTGGGGTGAGGAGgtaaacttgggtctgtaatcatagttcattttcaaagGGGTACTATTACT #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTG-GTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aaatcaatccagagatctcattacactggtaccccatgtgatcgctgcagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGTCAAGAAGACCACCCCGTTCTGCTATTGTTGCGTTGGTT-TGGTAAAAGGGAAGAGGGCATGCAAATGGGGACAGTCTTAACACATTCTCATAAACGTTGTCATTCCTTCTCATTCTGGGTCTTGAAGAACTCTTGGGGGGCCCACTGGGGTGAGAAGgtatgggtacaggaacacaatgaagcatagaaaagcaatgaagcaaatcc Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGC------TTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aaatcaatccagagatctcattacactggtaccccatgtgatcgctgcagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGTCAAGAAGACCACCCCGTTCTGCTATTGTTGCGTTGGTTTGGTAAAAGGGAAGAGGGCATGCAAATGGGGACAGTCTTAACACATTCTCATAAACGTTGTCATTCCTTCTCATTCTGGGTCTTGAAGAACTCTTGGGGGGCCCACTGGGGTGAGAAGgtatgggtacaggaacacaatgaagcatagaaaagcaatgaagcaaatcc Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTG------GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aaatcaatccagagatctcattacactggtaccccatgtgatcgctgcagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGTCAAGAAGACCACCCCGTTCTGCTATTGTTGCGTTGGTTTGGTAAAAGGGAAGAGGGCATGCAAATGGGGACAGTCTTAACACATTCTCATAAACGTTGTCATTCCTTCTCATTCTGGGTCTTGAAGAACTCTTGGGGGGCCCACTGGGGTGAGAAGgtatgggtacaggaacacaatgaagcatagaaaagcaatgaagcaaatcc Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGG------GCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aaatcaatccagagatctcattacactggtaccccatgtgatcgctgcagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGTCAAGAAGACCACCCCGTTCTGCTATTGTTGCGTTGGTTTGGTAAAAGGGAAGAGGGCATGCAAATGGGGACAGTCTTAACACATTCTCATAAACGTTGTCATTCCTTCTCATTCTGGGTCTTGAAGAACTCTTGGGGGGCCCACTGGGGTGAGAAGgtatgggtacaggaacacaatgaagcatagaaaagcaatgaagcaaatcc Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCT------------------------GGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aaatcaatccagagatctcattacactggtaccccatgtgatcgctgcagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGTCAAGAAGACCACCCCGTTCTGCTATTGTTGCGTTGGTTTGGTAAAAGGG------------------AAGAGGGCATGCAAATGGGGACAGTCTTAACACATTCTCATAAACGTTGTCATTCCTTCTCATTCTGGGTCTTGAAGAACTCTTGGGGGGCCCACTGGGGTGAGAAGgtatgggtacaggaacacaatgaagcatagaaaagcaatgaagcaaatcc Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTG------GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aaatcaatccagagatctcattacactggtaccccatgtgatcgctgcagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGTCAAGAAGACCACCCCGTTCTGCTATTGTTGCGTTGGTTTGGTAAAAGGGAAGAGGGCATGCAAATGGGGACAGTCTTAACACATTCTCATAAACGTTGTCATTCCTTCTCATTCTGGGTCTTGAAGAACTCTTGGGGGGCCCACTGGGGTGAGAAGgtatgggtacaggaacacaatgaagcatagaaaagcaatgaagcaaatcc Alignment from Exonerate_coding2genome TGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAGCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCT-CGGCAAGTGGACCACTCTGTCTTGCTGGTG------GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG AAATCAATCCAGAGATCTCATTACACTGGTACCCCATGTGATCGCTGCAGTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGA-CCCTCGTCAAGAAGACCACCCCGTTCTGCTATTGTTGCGTTGGTTTGGTAAAAGGGAAGAGGGCATGCAAATGGGGACAGTCTTAACACATTCTCATAAACGTTGTCATTCCTTCTCATTCTGGGTCTTGAAGAACTCTTGGGGGGCCCACTGGGGTGAGAAGgtatgggtacaggaacacaatgaagcatagaaaagcaatgaagcaaatcc Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTG------GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aaatcaatccagagatctcattacactggtaccccatgtgatcgctgcagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGTCAAGAAGACCACCCCGTTCTGCTATTGTTGCGTTGGTTTGGTAAAAGGGAAGAGGGCATGCAAATGGGGACAGTCTTAACACATTCTCATAAACGTTGTCATTCCTTCTCATTCTGGGTCTTGAAGAACTCTTGGGGGGCCCACTGGGGTGAGAAGgtatgggtacaggaacacaatgaagcatagaaaagcaatgaagcaaatcc #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCA-TTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg agtgtacttgacatcaaagtttcttgcttgattttaccccatctcctcaggtAGTCTGGCCACTGAAAAGGAATTTCCACTTTCAGAAGG-AAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAGGAAGTGGCATGGATCCCA------GCCACATTGTCTAATAATGAGCAGggtatcaccagggtcagatgaggtagctctgtgactgctcacctgacctgt Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg agtgtacttgacatcaaagtttcttgcttgattttaccccatctcctcaggtAGTCTGGCCACTGAAAAGGAATTTCCACTTTCAGAAGGAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAGGAAGTGGCATGGATCCCA------GCCACATTGTCTAATAATGAGCAGggtatcaccagggtcagatgaggtagctctgtgactgctcacctgacctgt Alignment from Spaln_aa2Genome CCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG agtgtacttgacatcaaagtttcttgcttgattttaccccatctcctcaggtagTCTGGCCACTGAAAAGGAATTTCCACTTTCAGAAGGAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAGGAAGTGGCATGGATCCCA------GCCACATTGTCTAATAATGAGCAGGgtatcaccagggtcagatgaggtagctctgtgactgctcacctgacctgt Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCA-TTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG agtgtacttgacatcaaagtttcttgcttgattttaccccatctcctcagGTAGTCTGGCCACTGAAAAGGAATTTCCACTTTCAGAAGGA-AGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAGGAAGTGGCATGGATCCCAG------CCACATTGTCTAATAATGAGCAGGgtatcaccagggtcagatgaggtagctctgtgactgctcacctgacctgt Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCA-TTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG agtgtacttgacatcaaagtttcttgcttgattttaccccatctcctcagGTAGTCTGGCCACTGAAAAGGAATTTCCACTTTCAGAAGGA-AGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAGGAAGTGGCATGGATCCCAG------CCACATTGTCTAATAATGAGCAGGgtatcaccagggtcagatgaggtagctctgtgactgctcacctgacctgt Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG agtgtacttgacatcaaagtttcttgcttgattttaccccatctcctcagGTAGTCTGGCCACTGAAAAGGAATTTCCACTTTCAGAAGGAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAGGAAGTGGCATGGATCCCA------GCCACATTGTCTAATAATGAGCAGGgtatcaccagggtcagatgaggtagctctgtgactgctcacctgacctgt Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAG agtgtacttgacatcaaagtttcttgcttgattttaccccatctcctcagGTAGTCTGGCCACTGAAAAGGAATTTCCACTTTCAGAAGGAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAGGAAGTGGCATGGATCCCA------GCCACATTGTCTAATAATGAGCAGggtatcaccagggtcagatgaggtagctctgtgactgctcacctgacctgt Alignment from GeneWise CCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG agtgtacttgacatcaaagtttcttgcttgattttaccccatctcctcaggtagTCTGGCCACTGAAAAGGAATTTCCACTTTCAGAAGGAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAGGAAGTGGCATGGATCCCA------GCCACATTGTCTAATAATGAGCAGGgtatcaccagggtcagatgaggtagctctgtgactgctcacctgacctgt #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAACGCTGTGGAAAT-GGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa aaagtctctacctgcatgtgacgattaacttaattttattttttccttagagCTTCTGGACTGCAAACACTGTGGCAATCGGCTGCAATG-TGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATagtaagttattatggctacaagcaggtgaagtgtacttgacatcaaagttt Alignment from CESAR agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa aaagtctctacctgcatgtgacgattaacttaattttattttttccttagagCTTCTGGACTGCAAACACTGTGGCAATCGGCTGCAATGTGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATagtaagttattatggctacaagcaggtgaagtgtacttgacatcaaagttt Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACAGTGG aaagtctctacctgcatgtgacgattaacttaattttattttttccttagAGCTTCTGGACTGCAAACACTGTGGCAATCGGCTGCAATGTGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAGTAAgttattatggctacaagcaggtgaagtgtacttgacatcaaagttt Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACGCTGTGGAAAT-GGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA aaagtctctacctgcatgtgacgattaacttaattttattttttccttagAGCTTCTGGACTGCAAACACTGTGGCAATCGGCTGCAAT-GTGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaagttattatggctacaagcaggtgaagtgtacttgacatcaaagttt Alignment from Pairagon AGCTGCTGGACTGCGAACGCTGTGGAAAT-GGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA aaagtctctacctgcatgtgacgattaacttaattttattttttccttagAGCTTCTGGACTGCAAACACTGTGGCAATCGGCTGCAAT-GTGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaagttattatggctacaagcaggtgaagtgtacttgacatcaaagttt Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA aaagtctctacctgcatgtgacgattaacttaattttattttttccttagAGCTTCTGGACTGCAAACACTGTGGCAATCGGCTGCAATGTGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaagttattatggctacaagcaggtgaagtgtacttgacatcaaagttt Alignment from Exonerate_coding2genome CTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA aaagtctctacctgcatgtgacgattaacttaattttattttttccttagagCTTCTGGACTGCAAACACTGTGGCAATCGGCTGCAATGTGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaagttattatggctacaagcaggtgaagtgtacttgacatcaaagttt Alignment from GeneWise AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACAGTGG aaagtctctacctgcatgtgacgattaacttaattttattttttccttagAGCTTCTGGACTGCAAACACTGTGGCAATCGGCTGCAATGTGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAGTAAgttattatggctacaagcaggtgaagtgtacttgacatcaaagttt #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCA-GCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg tggtttccgttcatccaactcaaggacatgtattttttctctgtttatagAGAGGGTGCAATCATTTCCCTGGGCGATGGATCAGTGTGTGCTGTTGGGCAATGGCACGCTGCTG-CAACATTCAGTCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaattggggtttccaagtggttagctgtattctctctttgcataccagc Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg tggtttccgttcatccaactcaaggacatgtattttttctctgtttatagAGAGGGTGCAATCATTTCCCTGGGCGATGGATCAGTGTGTGCTGTTGGGCAATGGCACGCTGCTGCAACATTCAGTCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaattggggtttccaagtggttagctgtattctctctttgcataccagc Alignment from Spaln_aa2Genome TG CAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG TGgtttccgttcatccaactcaaggacatgtattttttctctgtttatagagagggtgcaatcatttccctgggcgatggatcagTGTGTGCTGTTGGGCAATGGCACGCTGCTGCAACATTCAGTCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaattggggtttccaagtggttagctgtattctctctttgcataccagc Alignment from Spaln_nt2Genome TGCAAATGCTGCTGGGCCATGGCA-GCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG tggtttccgttcatccaactcaaggacatgtattttttctctgtttatagagagggtgcaatcatttccctgggcgatggatcagTG--TGTGCTGTTGGGCAATGGCACGCTGCTG-CAACATTCAGTCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaattggggtttccaagtggttagctgtattctctctttgcataccagc Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCA-GCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG tggtttccgttcatccaactcaaggacatgtattttttctctgtttatagAGAGGGTGCAATCATTTCCCTGGGCGATGGATCAGTGTGTGCTGTTGGGCAATGGCACGCTGCTG-CAACATTCAGTCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaattggggtttccaagtggttagctgtattctctctttgcataccagc Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG tggtttccgttcatccaactcaaggacatgtattttttctctgtttatagagagggtgcaatcatttccctgggcgaTGGATCAGTGTGTGCTGTTGGGCAATGGCACGCTGCTGCAACATTCAGTCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaattggggtttccaagtggttagctgtattctctctttgcataccagc Alignment from Exonerate_coding2genome TGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGGAG TGGTTTCCGTTCATCCAACTCAAGGACATGTATTTTTTCTCTGTTTATAGAGAGGGTGCAATCATTTCCCTGGGCGATGGATCAgtgtgtgctgttgggcaatggcacgctgctgcaacattcagtctttgtggtgcataaagcaccagaagtttgtggatgtctcagtccagggtaattggggtttccaagtggttagctgtattctctctttgcataccagc Alignment from GeneWise TG CAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG TGgtttccgttcatccaactcaaggacatgtattttttctctgtttatagagagggtgcaatcatttccctgggcgatggatcagTGTGTGCTGTTGGGCAATGGCACGCTGCTGCAACATTCAGTCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaattggggtttccaagtggttagctgtattctctctttgcataccagc #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCA-GAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacactgttgccaccctgctgctaccactgtaattatgttttccttagagGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCACGAAT-GACCCCAAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAACCAGgtatgggccttagcttggtttccgttcatccaactcaaggacacccctct Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacactgttgccaccctgctgctaccactgtaattatgttttccttagagGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCACGAATGACCCCAAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAACCAGgtatgggccttagcttggtttccgttcatccaactcaaggacatgtattt Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGA---------AGCTG accacactgttgccaccctgctgctaccactgtaattatgttttccttagAGGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCACGAATGACCCCAAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAACCAGGTATGGGCCTTAGCTTGgtttccgttcatccaactcaaggacacccctct Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacactgttgccaccctgctgctaccactgtaattatgttttccttagAGGAGGAGTTTGGGCAATTATATGGG-AGAAGA--TCCCCACGAATGACCCCAAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAACCAGgtatgggccttagcttggtttccgttcatccaactcaaggacacccctct Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGG------------------------------------------------- accacactgttgccaccctgctgctaccactgtaattatgttttccttagAGGAGGAGTTTGGGCAATTATATGGG-AGAAGA--TCCCCACGAATGACCCCAAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAACCAGGTATGGGCCTTAGCTTGGTTTCCGTTCATCCAACTCAAGGACACCCCTCT Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacactgttgccaccctgctgctaccactgtaattatgttttccttagAGGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCACGAATGACCCCAAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAACCAGgtatgggccttagcttggtttccgttcatccaactcaaggacacccctct Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGC accacactgttgccaccctgctgctaccactgtaattatgttttccttagAGGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCACGAATGACCCCAAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAACCAGGTATGGGCCTTAGCTTGGTTTCCGTTCATCCAACTCAAGGACACCCCTCT Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGA---------AGCTG accacactgttgccaccctgctgctaccactgtaattatgttttccttagAGGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCACGAATGACCCCAAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAACCAGGTATGGGCCTTAGCTTGgtttccgttcatccaactcaaggacacccctct #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAAT-CTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactggctcttatctgactcaaatgactttaccccctgtgcttttcagagTACACTCATCATCTGAGCATCTTTGCCCACAATCCTAGCTC-GGCGCAGAGGCTTCAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACACCTTTCAGCGACCTCAACagtctgtgggtttgtgtggtgaggcgccctcttctgtgtgctcccaatcat Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactggctcttatctgactcaaatgactttaccccctgtgcttttcagagTACACTCATCATCTGAGCATCTTTGCCCACAATCCTAGCTCGGCGCAGAGGCTTCAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACACCTTTCAGCGACCTCAACagtctgtgggtttgtgtggtgaggcgccctcttctgtgtgctcccaatcat Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctgactcaaatgactttaccccctgtgcttttcagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCCTAGCTCGGCGCAGAGGCTTCAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACACCTTTCAGCGACCTCAACAgtctgtgggtttgtgtggtgaggcgccctcttctgtgtgctcccaatcat Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctgactcaaatgactttaccccctgtgcttttcagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCCTAGCTCGGCGCAGAGGCTTCAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACACCTTTCAGCGACCTCAACAgtctgtgggtttgtgtggtgaggcgccctcttctgtgtgctcccaatcat Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATC-TGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctgactcaaatgactttaccccctgtgcttttcagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCCTAGCTC-GGCGCAGAGGCTTCAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACACCTTTCAGCGACCTCAACAgtctgtgggtttgtgtggtgaggcgccctcttctgtgtgctcccaatcat Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctgactcaaatgactttaccccctgtgcttttcagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCCTAGCTCGGCGCAGAGGCTTCAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACACCTTTCAGCGACCTCAACAgtctgtgggtttgtgtggtgaggcgccctcttctgtgtgctcccaatcat Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctgactcaaatgactttaccccctgtgcttttcagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCCTAGCTCGGCGCAGAGGCTTCAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACACCTTTCAGCGACCTCAACAgtctgtgggtttgtgtggtgaggcgccctcttctgtgtgctcccaatcat Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctgactcaaatgactttaccccctgtgcttttcagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCCTAGCTCGGCGCAGAGGCTTCAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACACCTTTCAGCGACCTCAACAgtctgtgggtttgtgtggtgaggcgccctcttctgtgtgctcccaatcat #### Cutc_ID8809_4 --> 2 - 1 Original Alignment gtGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAA-GTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAg tatgcctcaggggtagcttgattctggcgttgcctatctgcccactctaggaGTGCTGCAAGTGGTGAAACAGAGTGTCCATGTCCCAGTGTTTGTGATTATTCACCCACGAGGAGGTGACTTCCTGCACTCAGACCATGAACGTAG-AGTGATGAAAGCTGATATTCGCCTAGCCAAGCTTTATGGTGCTGACGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAGTTGTGTATATCTCTTGTGggtacaggtcaagacaccagctaaaatacatgtataccatacagttgcagc Alignment from CESAR gtGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAg tatgcctcaggggtagcttgattctggcgttgcctatctgcccactctaggaGTGCTGCAAGTGGTGAAACAGAGTGTCCATGTCCCAGTGTTTGTGATTATTCACCCACGAGGAGGTGACTTCCTGCACTCAGACCATGAACGTAGAGTGATGAAAGCTGATATTCGCCTAGCCAAGCTTTATGGTGCTGACGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAGTTGTGTATATCTCTTGTGggtacaggtcaagacaccagctaaaatacatgtataccatacagttgcagc Alignment from Spaln_aa2Genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG tatgcctcaggggtagcttgattctggcgttgcctatctgcccactctagGAGTGCTGCAAGTGGTGAAACAGAGTGTCCATGTCCCAGTGTTTGTGATTATTCACCCACGAGGAGGTGACTTCCTGCACTCAGACCATGAACGTAGAGTGATGAAAGCTGATATTCGCCTAGCCAAGCTTTATGGTGCTGACGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAGTTGTGTATATCTCTTGTGGgtacaggtcaagacaccagctaaaatacatgtataccatacagttgcagc Alignment from Spaln_nt2Genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG tatgcctcaggggtagcttgattctggcgttgcctatctgcccactctagGAGTGCTGCAAGTGGTGAAACAGAGTGTCCATGTCCCAGTGTTTGTGATTATTCACCCACGAGGAGGTGACTTCCTGCACTCAGACCATGAACGTAGAGTGATGAAAGCTGATATTCGCCTAGCCAAGCTTTATGGTGCTGACGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAGTTGTGTATATCTCTTGTGGgtacaggtcaagacaccagctaaaatacatgtataccatacagttgcagc Alignment from Pairagon GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG tatgcctcaggggtagcttgattctggcgttgcctatctgcccactctagGAGTGCTGCAAGTGGTGAAACAGAGTGTCCATGTCCCAGTGTTTGTGATTATTCACCCACGAGGAGGTGACTTCCTGCACTCAGACCATGAACGTAGAGTGATGAAAGCTGATATTCGCCTAGCCAAGCTTTATGGTGCTGACGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAGTTGTGTATATCTCTTGTGGgtacaggtcaagacaccagctaaaatacatgtataccatacagttgcagc Alignment from Exonerate_protein2genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG tatgcctcaggggtagcttgattctggcgttgcctatctgcccactctagGAGTGCTGCAAGTGGTGAAACAGAGTGTCCATGTCCCAGTGTTTGTGATTATTCACCCACGAGGAGGTGACTTCCTGCACTCAGACCATGAACGTAGAGTGATGAAAGCTGATATTCGCCTAGCCAAGCTTTATGGTGCTGACGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAGTTGTGTATATCTCTTGTGGgtacaggtcaagacaccagctaaaatacatgtataccatacagttgcagc Alignment from Exonerate_coding2genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAGCTCTTT tatgcctcaggggtagcttgattctggcgttgcctatctgcccactctagGAGTGCTGCAAGTGGTGAAACAGAGTGTCCATGTCCCAGTGTTTGTGATTATTCACCCACGAGGAGGTGACTTCCTGCACTCAGACCATGAACGTAGAGTGATGAAAGCTGATATTCGCCTAGCCAAGCTTTATGGTGCTGACGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAGTTGTGTATATCTCTTGTGGGTACAGgtcaagacaccagctaaaatacatgtataccatacagttgcagc Alignment from GeneWise GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG tatgcctcaggggtagcttgattctggcgttgcctatctgcccactctagGAGTGCTGCAAGTGGTGAAACAGAGTGTCCATGTCCCAGTGTTTGTGATTATTCACCCACGAGGAGGTGACTTCCTGCACTCAGACCATGAACGTAGAGTGATGAAAGCTGATATTCGCCTAGCCAAGCTTTATGGTGCTGACGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAGTTGTGTATATCTCTTGTGGgtacaggtcaagacaccagctaaaatacatgtataccatacagttgcagc #### Cyp17a1_ID9997_3 --> 2 - 0 Original Alignment taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTG-GATGTCCTGGGCCACAGC---------------------------GATCTGGTGGACATATTCCCGTGGTTGAAG cgtcaagctactcctgtgctctattccattaatgccaacccatctttcagtaTGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAATCAGCAATTAACATCATCTGTACCATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGA---------ATGGAATCCATTGTTCGTGG-CTTGGGCCACAGTGATCTTGTTAAGAACACTCCATGGTTTGATCTAGTGGAGATAATCCCATGGTTAAAGgtaggcggagggaatttttatgaaagagtgacccactccccattttggca Alignment from CESAR taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGAT---------------------------CTGGTGGACATATTCCCGTGGTTGAAG cgtcaagctactcctgtgctctattccattaatgccaacccatctttcagtaTGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAATCAGCAATTAACATCATCTGTACCATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGA---------ATGGAATCCATTGTTCGTGGCTTGGGCCACAGTGATCTTGTTAAGAACACTCCATGGTTTGATCTAGTGGAGATAATCCCATGGTTAAAGgtaggcggagggaatttttatgaaagagtgacccactccccattttggca Alignment from Spaln_aa2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACC---ATACAGACCTTTACAGAGGGTATT------GTGGATGTCCTGGGCCACAGC---------GATCTGGTGGACATATTCCCGTGGTTGAAG cgtcaagctactcctgtgctctattccattaatgccaacccatctttcagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAATCAGCAATTAACATCATCTGTACCATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGAATGGAATCCATTGTTCGTGGCTTGGGCCACAGTGATCTTGTTAAGAACACTCCATGGTTTGATCTAGTGGAGATAATCCCATGGTTAAAGgtaggcggagggaatttttatgaaagagtgacccactccccattttggca Alignment from Spaln_nt2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACA GCGATCTGGTGGACATATTCCCGTGGTTGAAG cgtcaagctactcctgtgctctattccattaatgccaacccatctttcagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAATCAGCAATTAACATCATCTGTACCATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGA---------ATGGAATCCATTGTTCGTGGCTTGGGCCACAgtgatcttgttaagaacactccatggtttgatctag---------TGGAGATAATCCCATGGTTAAAGgtaggcggagggaatttttatgaaagagtgacccactccccattttggca Alignment from Pairagon TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTA------------CCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAG---------------------------CGATCTGGTGGACATATTCCCGTGGTTGAAG cgtcaagctactcctgtgctctattccattaatgccaacccatctttcagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAATCAGCAATTAACATCATCTGTACCATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGAATGGAATCC---------------------ATTGTTCGTGGCTTGGGCCACAGTGATCTTGTTAAGAACACTCCATGGTTTGATCTAGTGGAGATAATCCCATGGTTAAAGgtaggcggagggaatttttatgaaagagtgacccactccccattttggca Alignment from Exonerate_protein2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG cgtcaagctactcctgtgctctattccattaatgccaacccatctttcagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAATCAGCAATTAACATCATCTGTACCATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGAATG---------GAATCCATTGTTCGTGGCTTGGGCCACAGTGATCTTGTTAAGAACACTCCATGGTTTGATctagtggagataatcccatggttaaaggtaggcggagggaatttttatgaaagagtgacccactccccattttggca Alignment from Exonerate_coding2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG cgtcaagctactcctgtgctctattccattaatgccaacccatctttcagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAATCAGCAATTAACATCATCTGTACCATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGAATG---------GAATCCATTGTTCGTGGCTTGGGCCACAGTGATCTTGTTAAGAACACTCCATGGTTTGATctagtggagataatcccatggttaaaggtaggcggagggaatttttatgaaagagtgacccactccccattttggca Alignment from GeneWise TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAGATT cgtcaagctactcctgtgctctattccattaatgccaacccatctttcagTATGCCAAGAGGCCAACTCACTGTGTGACTTGATACTTTCTTATGACGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAATCAGCAATTAACATCATCTGTACCATATGTTTTAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGAGAATG---------GAATCCATTGTTCGTGGCTTGGGCCACAGTGATCTTGTTAAGAACACTCCATGGTTTGATCTAgtggagataatcccatggttaaaggtaggcggagggaatttttatgaaagagtgacccactccccattttggca #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTC-GAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTA caagcacaaagtataggttgacaaacaccccgccctcctcttccttccagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATAGCTGAGGAAGTCAGCAGTTGTTTGGAACAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCGTATCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTAGAGTCTTTTCGAGGAAA-GACCCGTAATCTCGTTTCCCTTCCCATTGATGTCCCGTTCAGTGGTCTGTACCGTgtacgtcatttctcaatccctgttgcagGGTGTT---TCTCGTAATATAA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTA caagcacaaagtataggttgacaaacaccccgccctcctcttccttccagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATAGCTGAGGAAGTCAGCAGTTGTTTGGAACAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCGTATCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTAGAGTCTTTTCGAGGAAAGACCCGTAATCTCGTTTCCCTTCCCATTGATGTCCCGTTCAGTGGTCTGTACCGTgtaactttctggtctgcttaccttccagGGTGTT---TCTCGTAATATAA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGGGGCGTGAAGGCGCGGAACCTTATACAC caagcacaaagtataggttgacaaacaccccgccctcctcttccttccagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATAGCTGAGGAAGTCAGCAGTTGTTTGGAACAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCGTATCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTAGAGTCTTTTCGAGGAAAGACCCGTAATCTCGTTTCCCTTCCCATTGATGTCCCGTTCAGTGGTCTGTACCGT---GTACGT---CATTTCTCAATCCCTgttgcagggtgtttctcgtaata Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCT GTACCGGGGCGTGAAGGCGCGG caagcacaaagtataggttgacaaacaccccgccctcctcttccttccagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATAGCTGAGGAAGTCAGCAGTTGTTTGGAACAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCGTATCCTGAGGTGAAGCGCCTTATGTT---CATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTAGAGTCTTTTCGAGGAAAGACCCGTAATCTCGTTTCCCTTCCCATTGATGTCCCGTTCAGTGGTCTgtaccgtgtacgtcatttctcaatccctgttgcagG---------GTG-TTTCTCGT Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGC-TTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGGGGCGTGAAGGCGCGGAACCTT----------------------------------------------ATAC caagcacaaagtataggttgacaaacaccccgccctcctcttccttccagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATAGCTGAGGAAGTCAGCAGTTGTTTGGAACAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCGTATCCTGAGGTGAAGCGCCTTATGTT---CATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTAGAGTCTTTTCGAGGAAA-GACCCGTAATCTCGTTTCCCTTCCCATTGATGTCCCGTTCAGTGGTCTGTACCG---------------------TGTACGTCATTTCTCAATCCCTGTTGCAGGGTGTTTCTCGTAATATAATAC Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGG AGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGGGGCGTGAAGGCGCGGAACCTTA caagcacaaagtataggttgacaaacaccccgccctcctcttccttccagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATAGCTGAGGAAGTCAGCAGTTGTTTGGAACAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCGTATCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTAGAGTCTTTTCGAGgaaagacccgtaatctcgtttcccttcccatTGATGTCCCGTTCAGTGGTC---TGTACCGTGTACGTCATTTCTCAATCCCTGTTGCAGGGTGTT---TCTCGTAATATAA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG caagcacaaagtataggttgacaaacaccccgccctcctcttccttccagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATAGCTGAGGAAGTCAGCAGTTGTTTGGAACAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCGTATCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTAGAGTCTTTTCGAGGAAAGACCCGTAATCTCGTTTCCCTTCCCATTGATGTCCCGTTCAGTGGTCTGTACCGTgtacgtcatttctcaatccctgttgcagggtgtttctcgtaatataatac Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG---------------------------GGCGTGAAGGCGCGGAACCTTAT caagcacaaagtataggttgacaaacaccccgccctcctcttccttccagGTCATAATGCATGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATAGCTGAGGAAGTCAGCAGTTGTTTGGAACAGTGGCTATGCTGTGGTGAACATGGTCTCCTTGCGTATCCTGAGGTGAAGCGCCTTATGTTC---ATTGCTATGCGAATCCTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTAGAGTCTTTTCGAGGAAAGACCCGTAATCTCGTTTCCCTTCCCATTGATGTCCCGTTCAGTGGTCTGTACCGTGTACGTCATTTCTCAATCCCTGTTGCAGGGTGTT--TCTCGTAATATAAT #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGT-GTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agcccggctgtggtgccaaggttgcttacctgcttggctctggcctgcaggcATTGGATTTAGCAATGGAACCGTATGGAAGAACACCAGGCACTTCTCACTGATGACATTGTGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTCGTTC-AGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGAGTAATggtaagtggaacgagagtgaggttaccaactgggttgcgcaaattctgttt Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agcccggctgtggtgccaaggttgcttacctgcttggctctggcctgcaggcATTGGATTTAGCAATGGAACCGTATGGAAGAACACCAGGCACTTCTCACTGATGACATTGTGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGAGTAATggtaagtggaacgagagtgaggttaccaactgggttgcgcaaattctgttt Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcccggctgtggtgccaaggttgcttacctgcttggctctggcctgcagGCATTGGATTTAGCAATGGAACCGTATGGAAGAACACCAGGCACTTCTCACTGATGACATTGTGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGAGTAATGgtaagtggaacgagagtgaggttaccaactgggttgcgcaaattctgttt Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcccggctgtggtgccaaggttgcttacctgcttggctctggcctgcagGCATTGGATTTAGCAATGGAACCGTATGGAAGAACACCAGGCACTTCTCACTGATGACATTGTGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGAGTAATGgtaagtggaacgagagtgaggttaccaactgggttgcgcaaattctgttt Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcccggctgtggtgccaaggttgcttacctgcttggctctggcctgcagGCATTGGATTTAGCAATGGAACCGTATGGAAGAACACCAGGCACTTCTCACTGATGACATTGTGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGAGTAATGgtaagtggaacgagagtgaggttaccaactgggttgcgcaaattctgttt Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcccggctgtggtgccaaggttgcttacctgcttggctctggcctgcagGCATTGGATTTAGCAATGGAACCGTATGGAAGAACACCAGGCACTTCTCACTGATGACATTGTGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGAGTAATGgtaagtggaacgagagtgaggttaccaactgggttgcgcaaattctgttt Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcccggctgtggtgccaaggttgcttacctgcttggctctggcctgcagGCATTGGATTTAGCAATGGAACCGTATGGAAGAACACCAGGCACTTCTCACTGATGACATTGTGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGAGTAATGgtaagtggaacgagagtgaggttaccaactgggttgcgcaaattctgttt Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcccggctgtggtgccaaggttgcttacctgcttggctctggcctgcagGCATTGGATTTAGCAATGGAACCGTATGGAAGAACACCAGGCACTTCTCACTGATGACATTGTGGAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGAGTAATGgtaagtggaacgagagtgaggttaccaactgggttgcgcaaattctgttt #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTC-CCAGTTTTTGATAAAGCTACTAATGGAATGg gggtgacttcatatggttacttcatattcatttcatctgtatatttgcagTTATCACGAGTTTATGGTCCATTTTATACTTTATATCTAGGGAGGAAGCCAACTGTTGTTTTACATGGGTATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGAAGGGGTAGTCTCCCCAT-TTTTGGTAAAGCTACCAATGGAATGggtgagctctggggcgtgtaccatgcatggttgcactactatgatatccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg gggtgacttcatatggttacttcatattcatttcatctgtatatttgcagTTATCACGAGTTTATGGTCCATTTTATACTTTATATCTAGGGAGGAAGCCAACTGTTGTTTTACATGGGTATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGAAGGGGTAGTCTCCCCATTTTTGGTAAAGCTACCAATGGAATGggtgagctctggggcgtgtaccatgcatggttgcactactatgatatccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG gggtgacttcatatggttacttcatattcatttcatctgtatatttgcagTTATCACGAGTTTATGGTCCATTTTATACTTTATATCTAGGGAGGAAGCCAACTGTTGTTTTACATGGGTATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGAAGGGGTAGTCTCCCCATTTTTGGTAAAGCTACCAATGGAATGGgtgagctctggggcgtgtaccatgcatggttgcactactatgatatccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGA---AGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG gggtgacttcatatggttacttcatattcatttcatctgtatatttgcagTTATCACGAGTTTATGGTCCATTTTATACTTTATATCTAGGGAGGAAGCCAACTGTTGTTTTACATGGGTATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGAAGGGGTAGTCTCCCCATTTTTGGTAAAGCTACCAATGGAATGGgtgagctctggggcgtgtaccatgcatggttgcactactatgatatccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG gggtgacttcatatggttacttcatattcatttcatctgtatatttgcagTTATCACGAGTTTATGGTCCATTTTATACTTTATATCTAGGGAGGAAGCCAACTGTTGTTTTACATGGGTATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGAAGGGGTAGTCTCCCCATTTTTGGTAAAGCTACCAATGGAATGGgtgagctctggggcgtgtaccatgcatggttgcactactatgatatccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG gggtgacttcatatggttacttcatattcatttcatctgtatatttgcagTTATCACGAGTTTATGGTCCATTTTATACTTTATATCTAGGGAGGAAGCCAACTGTTGTTTTACATGGGTATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGAAGGGGTAGTCTCCCCATTTTTGGTAAAGCTACCAATGGAATGGgtgagctctggggcgtgtaccatgcatggttgcactactatgatatccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG gggtgacttcatatggttacttcatattcatttcatctgtatatttgcagTTATCACGAGTTTATGGTCCATTTTATACTTTATATCTAGGGAGGAAGCCAACTGTTGTTTTACATGGGTATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGAAGGGGTAGTCTCCCCATTTTTGGTAAAGCTACCAATGGAATGGgtgagctctggggcgtgtaccatgcatggttgcactactatgatatccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA---GCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG gggtgacttcatatggttacttcatattcatttcatctgtatatttgcagTTATCACGAGTTTATGGTCCATTTTATACTTTATATCTAGGGAGGAAGCCAACTGTTGTTTTACATGGGTATGAGGCTGTGAAGGAGGAAGTTCTTGCTGACCAAGGGGATATTTTTGCTGGAAGGGGTAGTCTCCCCATTTTTGGTAAAGCTACCAATGGAATGGgtgagctctggggcgtgtaccatgcatggttgcactactatgatatccaa #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAATTCTGAA-CAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg atgcccatcttctgcctacgtgtacacaggggtttttcttttattttaagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACCAAAAGAATT-AACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGggtaagtgtagcttaggaatgttggcttacatttaaattaagtaggccatt Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg atgcccatcttctgcctacgtgtacacaggggtttttcttttattttaagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACCAAAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGggtaagtgtagcttaggaatgttggcttacatttaaattaagtaggccatt Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccatcttctgcctacgtgtacacaggggtttttcttttattttaagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACCAAAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGgtaagtgtagcttaggaatgttggcttacatttaaattaagtaggccatt Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccatcttctgcctacgtgtacacaggggtttttcttttattttaagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACCAAAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGgtaagtgtagcttaggaatgttggcttacatttaaattaagtaggccatt Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccatcttctgcctacgtgtacacaggggtttttcttttattttaagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACCAAAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGgtaagtgtagcttaggaatgttggcttacatttaaattaagtaggccatt Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccatcttctgcctacgtgtacacaggggtttttcttttattttaagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACCAAAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGgtaagtgtagcttaggaatgttggcttacatttaaattaagtaggccatt Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGCAAATTGAAGAATGAAAAGGAATCTCACAG atgcccatcttctgcctacgtgtacacaggggtttttcttttattttaagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACCAAAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGGTAAGTGTAGCTTAGGAATGTTGGCTTACATttaaattaagtaggccatt Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGCAAA- atgcccatcttctgcctacgtgtacacaggggtttttcttttattttaagAAGTTTCAAGAATTGCATAAAAAAAACTCAGAACCAAAAGAATTAACACTAAGATTCAGGCAGAAAAAAAGAAAGAGGTCAAAAAAGGGTAAGTgtagcttaggaatgttggcttacatttaaattaagtaggccatt #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtggttcagatatatatctttttctctttccagccATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGA-GGGAGCTTCATCTGGGGCAgtgcgaagaacagttcttaggaccattataggaagccttactacagctag Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtggttcagatatatatctttttctctttccagccATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGAGGGAGCTTCATCTGGGGCAgtgcgaagaacagttcttaggaccattataggaagccttactacagctag Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtggttcagatatatatctttttctctttccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGAGGGAGCTTCATCTGGGGCAgtgcgaagaacagttcttaggaccattataggaagccttactacagctag Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGC-TGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtggttcagatatatatctttttctctttccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGA-GGGAGCTTCATCTGGGGCAgtgcgaagaacagttcttaggaccattataggaagccttactacagctag Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGC--------------------------------------------------- agaaattaaagtggcttgtggttcagatatatatctttttctctttccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGA-GGGAGCTTCATCTGGGGCAGTGCGAAGAACAGTTCTTAGGACCATTATAGGAAGCCTTACTACAGCTAG Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtggttcagatatatatctttttctctttccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGAGGGAGCTTCATCTGGGGCAgtgcgaagaacagttcttaggaccattataggaagccttactacagctag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtggttcagatatatatctttttctctttccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGAGGGAGCTTCATCTGGGGCAgtgcgaagaacagttcttaggaccattataggaagccttactacagctag #### Dak_ID2902_11 --> 2 - 1 Original Alignment atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTG------------------ACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCC-CCTGAAGCCACTGCAGCAGGAg atcaaggcactactgctgtatgaatgggactgtcttttccttgtcctcagatGCTGAGTCAACTGCAAAACGT---TAT---ATGACCAAAGTCTCTGTCATGACCAAAGTCTCCATAACTGGGAGGAAACAGATCCGGGCATCCCCCACAGAGCCACCTGAGTCCCCCGGAAG-TACTGTTGCAGGGggtgagtagtccagatgtgaatactaaggacaaggaaggcttacctagcag Alignment from CESAR atGCTGAAACTACTGCAAAAGCCTGG------------CCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg atcaaggcactactgctgtatgaatgggactgtcttttccttgtcctcagatGCTGAGTCAACTGCAAAACGTTATATGACCAAAGTCTCTGTCATGACCAAAGTCTCCATAACTGGGAGGAAACAGATCCGGGCATCCCCCACAGAGCCACCTGAGTCCCCCGGAAGTACTGTTGCAGGGggtgagtagtccagatgtgaatactaaggacaaggaaggcttacctagcag Alignment from Spaln_aa2Genome ATGCTGAAACTACTGCAAAAGCCTGG------------CCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG atcaaggcactactgctgtatgaatgggactgtcttttccttgtcctcagATGCTGAGTCAACTGCAAAACGTTATATGACCAAAGTCTCTGTCATGACCAAAGTCTCCATAACTGGGAGGAAACAGATCCGGGCATCCCCCACAGAGCCACCTGAGTCCCCCGGAAGTACTGTTGCAGGGGgtgagtagtccagatgtgaatactaaggacaaggaaggcttacctagcag Alignment from Spaln_nt2Genome ATGCTGAAACTACTGCAAAAGCCTG----------GCCTCA--CATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG atcaaggcactactgctgtatgaatgggactgtcttttccttgtcctcagATGCTGAGTCAACTGCAAAACGTTATATGACCAAAGTCTCTGTCATGACCAAAGTCTCCATAACTGGGAGGAAACAGATCCGGGCATCCCCCACAGAGCCACCTGAGTCCCCCGGAAGTACTGTTGCAGGGGgtgagtagtccagatgtgaatactaaggacaaggaaggcttacctagcag Alignment from Pairagon ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTG------------------TGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG atcaaggcactactgctgtatgaatgggactgtcttttccttgtcctcagATGCTGAGTCAACTGCAAAA------CGTTATATGACCAAAGTCTCTGTCATGACCAAAGTCTCCATAACTGGGAGGAAACAGATCCGGGCATCCCCCACAGAGCCACCTGAGTCCCCCGGAAGTACTGTTGCAGGGGgtgagtagtccagatgtgaatactaaggacaaggaaggcttacctagcag Alignment from Exonerate_protein2genome ATGCTGAAACTACTGCAAAAGCCTGG------------CCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG atcaaggcactactgctgtatgaatgggactgtcttttccttgtcctcagATGCTGAGTCAACTGCAAAACGTTATATGACCAAAGTCTCTGTCATGACCAAAGTCTCCATAACTGGGAGGAAACAGATCCGGGCATCCCCCACAGAGCCACCTGAGTCCCCCGGAAGTACTGTTGCAGGGGgtgagtagtccagatgtgaatactaaggacaaggaaggcttacctagcag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGCTGAAACTACTGCAAAAGCCTGG------------CCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG atcaaggcactactgctgtatgaatgggactgtcttttccttgtcctcagATGCTGAGTCAACTGCAAAACGTTATATGACCAAAGTCTCTGTCATGACCAAAGTCTCCATAACTGGGAGGAAACAGATCCGGGCATCCCCCACAGAGCCACCTGAGTCCCCCGGAAGTACTGTTGCAGGGGgtgagtagtccagatgtgaatactaaggacaaggaaggcttacctagcag #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTG-GGCATCATAGCTGATGCTGCCATACGCTTGCTGg gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctaggtTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGCGGTATCA-TGCTGATGCTGCCATACATTTGCTTggtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctaggtTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGCGGTATCATGCTGATGCTGCCATACATTTGCTTggtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGCGGTATCATGCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGCGGTATCATGCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTG-GGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGCGGTATCAT-GCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGCGGTATCATGCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGCGGTATCATGCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACA-CACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctcaaccccctctaaattactgactatcttacctgcttccttctctttaggtACCCTAGGTGTCACCTTATCATCCTGTAGTGTGCCTGGCACCACACCACA-CTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGggtaaaaataccgtaacactgtttgttacgttgtgtccagctgccaggtac Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctcaaccccctctaaattactgactatcttacctgcttccttctctttaggtACCCTAGGTGTCACCTTATCATCCTGTAGTGTGCCTGGCACCACACCACACTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGggtaaaaataccgtaacactgtttgttacgttgtgtccagctgccaggtac Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctcaaccccctctaaattactgactatcttacctgcttccttctctttagGTACCCTAGGTGTCACCTTATCATCCTGTAGTGTGCCTGGCACCACACCACACTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGGgtaaaaataccgtaacactgtttgttacgttgtgtccagctgccaggtac Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctcaaccccctctaaattactgactatcttacctgcttccttctctttagGTACCCTAGGTGTCACCTTATCATCCTGTAGTGTGCCTGGCACCACACCACACTTTGAGCTTGCAGCTGATGAAATAGAGTT---GTTGGgtaaaaataccgtaacactgtttgttacgttgtgtccagctgccaggtac Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCT ctcaaccccctctaaattactgactatcttacctgcttccttctctttagGTACCCTAGGTGTCACCTTATCATCCTGTAGTGTGCCTGGCACCACACCACACTTTGAGCTTGCAGCTGATGAAATAGAGTTgttgggtaaaaataccgtaacactgtttgttacgttgtgtccagctgccaggtac Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctcaaccccctctaaattactgactatcttacctgcttccttctctttagGTACCCTAGGTGTCACCTTATCATCCTGTAGTGTGCCTGGCACCACACCACACTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGGgtaaaaataccgtaacactgtttgttacgttgtgtccagctgccaggtac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctcaaccccctctaaattactgactatcttacctgcttccttctctttagGTACCCTAGGTGTCACCTTATCATCCTGTAGTGTGCCTGGCACCACACCACACTTTGAGCTTGCAGCTGATGAAATAGAGTTG---TTGGgtaaaaataccgtaacactgtttgttacgttgtgtccagctgccaggtac #### Ddb1_ID2924_9 --> 0 - 0 Original Alignment CTCAATGTCGACAGCAACGAACAAGGCTCC-TATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaacccctcccccatcacatttcagCTCAATGTTGATAGCAATGAACAAGGGTCCCTATGTAG-GGCAATGGAAACATTCACTAATTTGGGACCTATTATAGATATGTTTGTCGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtacgtggcatccctaaagagtggaagactaggagctgtaaacatcttta Alignment from CESAR CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaacccctcccccatcacatttcagCTCAATGTTGATAGCAATGAACAAGGGTCCCTATGTAGGGCAATGGAAACATTCACTAATTTGGGACCTATTATAGATATGTTTGTCGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtacgtggcatccctaaagagtggaagactaggagctgtaaacatcttta Alignment from Spaln_aa2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaacccctcccccatcacatttcagCTCAATGTTGATAGCAATGAACAAGGGTCCCTATGTAGGGCAATGGAAACATTCACTAATTTGGGACCTATTATAGATATGTTTGTCGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtacgtggcatccctaaagagtggaagactaggagctgtaaacatcttta Alignment from Spaln_nt2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaacccctcccccatcacatttcagCTCAATGTTGATAGCAATGAACAAGGGTCCCTATGTAGGGCAATGGAAACATTCACTAATTTGGGACCTATTATAGATATGTTTGTCGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtacgtggcatccctaaagagtggaagactaggagctgtaaacatcttta Alignment from Pairagon CTCAATGTCGACAGCAACGAACAAGGCT-CCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaacccctcccccatcacatttcagCTCAATGTTGATAGCAATGAACAAGGGTCCCTATGTAG-GGCAATGGAAACATTCACTAATTTGGGACCTATTATAGATATGTTTGTCGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtacgtggcatccctaaagagtggaagactaggagctgtaaacatcttta Alignment from Exonerate_protein2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaacccctcccccatcacatttcagCTCAATGTTGATAGCAATGAACAAGGGTCCCTATGTAGGGCAATGGAAACATTCACTAATTTGGGACCTATTATAGATATGTTTGTCGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtacgtggcatccctaaagagtggaagactaggagctgtaaacatcttta Alignment from Exonerate_coding2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaacccctcccccatcacatttcagCTCAATGTTGATAGCAATGAACAAGGGTCCCTATGTAGGGCAATGGAAACATTCACTAATTTGGGACCTATTATAGATATGTTTGTCGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtacgtggcatccctaaagagtggaagactaggagctgtaaacatcttta Alignment from GeneWise CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaacccctcccccatcacatttcagCTCAATGTTGATAGCAATGAACAAGGGTCCCTATGTAGGGCAATGGAAACATTCACTAATTTGGGACCTATTATAGATATGTTTGTCGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtacgtggcatccctaaagagtggaagactaggagctgtaaacatcttta #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAATAAC-AGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag gacactggagttgtacatcatggtggggctcgctcattcattttctgcagtCTGGCATTGGCCAATAACCAGTACTC-CACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGGACAGTCCCCCTCTATGAGTCTCCTaggtaacattacacctgagatttacacctaagaagtgggaatggggcagggt Alignment from CESAR tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag gacactggagttgtacatcatggtggggctcgctcattcattttctgcagtCTGGCATTGGCCAATAACCAGTACTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGGACAGTCCCCCTCTATGAGTCTCCTaggtaacattacacctgagatttacacctaagaagtgggaatggggcagggt Alignment from Spaln_aa2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG gacactggagttgtacatcatggtggggctcgctcattcattttctgcagTCTGGCATTGGCCAATAACCAGTACTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaacattacacctgagatttacacctaagaagtgggaatggggcagggt Alignment from Spaln_nt2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG gacactggagttgtacatcatggtggggctcgctcattcattttctgcagTCTGGCATTGGCCAATAACCAGTACTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaacattacacctgagatttacacctaagaagtgggaatggggcagggt Alignment from Pairagon TCTGGCATTGGCCAATAA-CAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG gacactggagttgtacatcatggtggggctcgctcattcattttctgcagTCTGGCATTGGCCAATAACCAGTACTC-CACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaacattacacctgagatttacacctaagaagtgggaatggggcagggt Alignment from Exonerate_protein2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG gacactggagttgtacatcatggtggggctcgctcattcattttctgcagTCTGGCATTGGCCAATAACCAGTACTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaacattacacctgagatttacacctaagaagtgggaatggggcagggt Alignment from Exonerate_coding2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG gacactggagttgtacatcatggtggggctcgctcattcattttctgcagTCTGGCATTGGCCAATAACCAGTACTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaacattacacctgagatttacacctaagaagtgggaatggggcagggt Alignment from GeneWise TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG gacactggagttgtacatcatggtggggctcgctcattcattttctgcagTCTGGCATTGGCCAATAACCAGTACTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaacattacacctgagatttacacctaagaagtgggaatggggcagggt #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAG-CAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg cggccagaacctgtgtagatagcagatctttatctcatttctacatctagtgCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCCAAGGTC-TATTGTGGTTTTCCAATATTCTGATggtgcgatgatgaatttgaggctccttttttttttttagaggcctgtttgt Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg cggccagaacctgtgtagatagcagatctttatctcatttctacatctagtgCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCCAAGGTCTATTGTGGTTTTCCAATATTCTGATggtgcgatgatgaatttgaggctccttttttttttttagaggcctgtttgt Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG cggccagaacctgtgtagatagcagatctttatctcatttctacatctagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCCAAGGTCTATTGTGGTTTTCCAATATTCTGATGgtgcgatgatgaatttgaggctccttttttttttttagaggcctgtttgt Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG cggccagaacctgtgtagatagcagatctttatctcatttctacatctagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCCAAGGTCTATTGTGGTTTTCCAATATTCTGATGgtgcgatgatgaatttgaggctccttttttttttttagaggcctgtttgt Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG cggccagaacctgtgtagatagcagatctttatctcatttctacatctagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCCAAGGTCTATTGTGGTTTTCCAATATTCTGATGgtgcgatgatgaatttgaggctccttttttttttttagaggcctgtttgt Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG cggccagaacctgtgtagatagcagatctttatctcatttctacatctagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCCAAGGTCTATTGTGGTTTTCCAATATTCTGATGgtgcgatgatgaatttgaggctccttttttttttttagaggcctgtttgt Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG cggccagaacctgtgtagatagcagatctttatctcatttctacatctagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCCAAGGTCTATTGTGGTTTTCCAATATTCTGATGgtgcgatgatgaatttgaggctccttttttttttttagaggcctgtttgt Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG cggccagaacctgtgtagatagcagatctttatctcatttctacatctagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCAATGGTGTATCCAGAAGAGGCAGAGCCCAAGCCAAGGTCTATTGTGGTTTTCCAATATTCTGATGgtgcgatgatgaatttgaggctccttttttttttttagaggcctgtttgt #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcaggtatggaacaccccaccatccctctgctttcctcacaggtATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAGGGAAAGGTCTGTTGAAATGCCTTGGCA-TGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGA---ACTGCATTGGCTTCAAAGATTTATCATACTAAAggtaaaagaacagtgtaagaacttcggattgaatctgcaaaaacaatgaga Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcaggtatggaacaccccaccatccctctgctttcctcacaggtATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAGGGAAAGGTCTGTTGAAATGCCTTGGCATGACCACAATGCTGCTGCAGGGGATGGATTTCCC---AGAACTGCATTGGCTTCAAAGATTTATCATACTAAAggtaaaagaacagtgtaagaacttcggattgaatctgcaaaaacaatgaga Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccaccatccctctgctttcctcacagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAGGGAAAGGTCTGTTGAAATGCCTTGGCATGACCACAATGCTGCTGCAGGGGATGGATTTCCC---AGAACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaaagaacagtgtaagaacttcggattgaatctgcaaaaacaatgaga Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccaccatccctctgctttcctcacagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAGGGAAAGGTCTGTTGAAATGCCTTGGCATGACCACAATGCTGCTGCAGGGGATGGATTTCCC---AGAACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaaagaacagtgtaagaacttcggattgaatctgcaaaaacaatgaga Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccaccatccctctgctttcctcacagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAGGGAAAGGTCTGTTGAAATGCCTTGGCATGACCACAATGCTGCTGCAGGGGATGGATTTCCC---AGAACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaaagaacagtgtaagaacttcggattgaatctgcaaaaacaatgaga Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccaccatccctctgctttcctcacagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAGGGAAAGGTCTGTTGAAATGCCTTGGCATGACCACAATGCTGCTGCAGGGGATGGATTTCCC---AGAACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaaagaacagtgtaagaacttcggattgaatctgcaaaaacaatgaga Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccaccatccctctgctttcctcacagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAGGGAAAGGTCTGTTGAAATGCCTTGGCATGACCACAATGCTGCTGCAGGGGATGGATTTCCC---AGAACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaaagaacagtgtaagaacttcggattgaatctgcaaaaacaatgaga Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccaccatccctctgctttcctcacagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAGGGAAAGGTCTGTTGAAATGCCTTGGCATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGA---ACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaaagaacagtgtaagaacttcggattgaatctgcaaaaacaatgaga #### Dkk1_ID6483_2 --> 0 - 1 Original Alignment CCCTACCCTTGCGCT-GAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTCATAGATG-GGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---GTTGAT------CAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATcgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from CESAR CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTCATAGATGGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---GTTGAT------CAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATcgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Spaln_aa2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTCATAGATGGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---------GTTGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Spaln_nt2Genome CCCTACCCTTGCGCTGA-AGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTCATAGATG-GGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGC---------TGTTGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Pairagon CCCTACCCTTGCGCTGA-AGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTCATAGATG-GGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCTGT---------TGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Exonerate_protein2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTCATAGATGGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---------GTTGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Exonerate_coding2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTCATAGATGGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---------GTTGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from GeneWise CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTCATAGATGGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCTGTTGAT---------CAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg #### Dnajc4_ID1965_3 --> 0 - 2 Original Alignment CTACACCCTGATCGAGAC-CCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACag aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCCTGGGTA-TCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACaggtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from CESAR CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACag aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCCTGGGTATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACaggtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Spaln_aa2Genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCCTGGGTATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Spaln_nt2Genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCCTGGGTATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Pairagon CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCCTGGGTATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Exonerate_protein2genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCCTGGGTATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Exonerate_coding2genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCCTGGGTATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from GeneWise CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCCTGGGTATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCCTCT---------------GGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCA-AAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG tgatgagctatctgtgagctatacatgtcgttttgtctttcctgtttaagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGATGAAGATACACCACAAGCGTC-GGGTAAGGGCAAGTCCAAAgtgaaaagtttcttcttcttttctgtgtgctttcacagGGGACAGGTGTC Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG tgatgagctatctgtgagctatacatgtcgttttgtctttcctgtttaagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGATGAAGATACACCACAAGCGTCGGGTAAGGGCAAGTCCAAAgtgaaaagtttcttctctatttgcccctcccctcccagGGGACAGGTGTC Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAGAGTAAGG GTGTG tgatgagctatctgtgagctatacatgtcgttttgtctttcctgtttaagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGATGAAGATACACCACAAGCGTCGGGTAAGGGCAAGTCCAAAGTGAAAAgtttcttcttcttttctgtgtgctttcacaggggacagGTGTC Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG tgatgagctatctgtgagctatacatgtcgttttgtctttcctgtttaagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGATGAAGATACACCACAAGCGTCGGGTAAGGGCAAGTCCAAAgtgaaaagtttcttcttcttttctgtgtgctttcacagGGGACAGGTGTC Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCA-AAGCGTCGGGGGAAGGGGAAGTCCA--------------------------------------AGAGTAAGGGTGTG tgatgagctatctgtgagctatacatgtcgttttgtctttcctgtttaagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGATGAAGATACACCACAAGCGTC-GGGTAAGGGCAAGTCCAAAGTGAAAAGTTTCTTCTTCTTTTCTGTGTGCTTTCACAGGGGACAGGTGTC Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG tgatgagctatctgtgagctatacatgtcgttttgtctttcctgtttaagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGATGAAGATACACCACAAGCGTCGGGTAAGGGCAAGTCCAAAgtgaaaagtttcttcttcttttctgtgtgctttcacagGGGACAGGTGTC Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG tgatgagctatctgtgagctatacatgtcgttttgtctttcctgtttaagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGATGAAGATACACCACAAGCGTCGGGTAAGGGCAAGTCCAAAgtgaaaagtttcttcttcttttctgtgtgctttcacagGGGACAGGTGTC Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG tgatgagctatctgtgagctatacatgtcgttttgtctttcctgtttaagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGATGAAGATACACCACAAGCGTCGGGTAAGGGCAAGTCCAAAgtgaaaagtttcttcttcttttctgtgtgctttcacagGGGACAGGTGTC #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAG-GAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gaatatgtggatagatcaaaatgaagattttgttttgtgtttccttgtagGCATATGCAGCCAACTGCCACCAACAAGCAAA-GCTGTCCCAGTATGTGGAAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTGTTGTAAAGaggtatgtcgtcacccaatcttctcaatatctctttcaatataccctttagg Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gaatatgtggatagatcaaaatgaagattttgttttgtgtttccttgtagGCATATGCAGCCAACTGCCACCAACAAGCAAAGCTGTCCCAGTATGTGGAAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTGTTGTAAAGaggtatgtcgtcacccaatcttctcaatatctctttcaatataccctttagg Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatagatcaaaatgaagattttgttttgtgtttccttgtagGCATATGCAGCCAACTGCCACCAACAAGCAAAGCTGTCCCAGTATGTGGAAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTGTTGTAAAGAGgtatgtcgtcacccaatcttctcaatatctctttcaatataccctttagg Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatagatcaaaatgaagattttgttttgtgtttccttgtagGCATATGCAGCCAACTGCCACCAACAAGCAAAGCTGTCCCAGTATGTGGAAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTGTTGTAAAGAGgtatgtcgtcacccaatcttctcaatatctctttcaatataccctttagg Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatagatcaaaatgaagattttgttttgtgtttccttgtagGCATATGCAGCCAACTGCCACCAACAAGCAAAGCTGTCCCAGTATGTGGAAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTGTTGTAAAGAGgtatgtcgtcacccaatcttctcaatatctctttcaatataccctttagg Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatagatcaaaatgaagattttgttttgtgtttccttgtagGCATATGCAGCCAACTGCCACCAACAAGCAAAGCTGTCCCAGTATGTGGAAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTGTTGTAAAGAGgtatgtcgtcacccaatcttctcaatatctctttcaatataccctttagg Alignment from Exonerate_coding2genome gaatatgtggatagatcaaaatgaagattttgttttgtgtttccttgtaggcatatgcagccaactgccaccaacaagcaaagctgtcccagtatgtggaaagcttcactgaaggatccattgatgcccataagaggggttcccatttctggatccaggacaaaggccctgttgtaaagaggtatgtcgtcacccaatcttctcaatatctctttcaatataccctttagg Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatagatcaaaatgaagattttgttttgtgtttccttgtagGCATATGCAGCCAACTGCCACCAACAAGCAAAGCTGTCCCAGTATGTGGAAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTGTTGTAAAGAGgtatgtcgtcacccaatcttctcaatatctctttcaatataccctttagg #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCAC-CCTCCTGCCCACTTTCAGag gcattgttaaattttgtgtcccaaaatcttgtgtttctgctatcttctagGATAAGTCTGAGGATATGGATACAGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCCCC-TGCTCACTATCAAaggtaaaatttacttaggaagtgtaccagttttttcaccctgacactggctt Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag gcattgttaaattttgtgtcccaaaatcttgtgtttctgctatcttctagGATAAGTCTGAGGATATGGATACAGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAAaggtaaaatttacttaggaagtgtaccagttttttcaccctgacactggctt Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gcattgttaaattttgtgtcccaaaatcttgtgtttctgctatcttctagGATAAGTCTGAGGATATGGATACAGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAAAGgtaaaatttacttaggaagtgtaccagttttttcaccctgacactggctt Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gcattgttaaattttgtgtcccaaaatcttgtgtttctgctatcttctagGATAAGTCTGAGGATATGGATACAGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAAAGgtaaaatttacttaggaagtgtaccagttttttcaccctgacactggctt Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gcattgttaaattttgtgtcccaaaatcttgtgtttctgctatcttctagGATAAGTCTGAGGATATGGATACAGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAAAGgtaaaatttacttaggaagtgtaccagttttttcaccctgacactggctt Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gcattgttaaattttgtgtcccaaaatcttgtgtttctgctatcttctagGATAAGTCTGAGGATATGGATACAGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAAAGgtaaaatttacttaggaagtgtaccagttttttcaccctgacactggctt Alignment from Exonerate_coding2genome AGGATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gcattgttaaattttgtgtcccaaaatcttgtgtttctgctatcttctAGGATAAGTCTGAGGATATGGATACAGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAAAGgtaaaatttacttaggaagtgtaccagttttttcaccctgacactggctt Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gcattgttaaattttgtgtcccaaaatcttgtgtttctgctatcttctagGATAAGTCTGAGGATATGGATACAGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCCCCTGCTCACTATCAAAGgtaaaatttacttaggaagtgtaccagttttttcaccctgacactggctt #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTG-TCCGGGACAGACTCTGAGCAGGAG CCTCGAaggttagcggctagggacctgctaaccatgcactttcttcctagaGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCCTCTGGGACAG-TTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggcaagtggctagggacctgctaaccatgcactttcttcctagaGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCCTCTGGGACAGTTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgttagcggctagggacctgctaaccatgcactttcttcctagAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCCTCTGGGACAGTTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTG-TCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgttagcggctagggacctgctaaccatgcactttcttcctagAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCCTCTGGGACAG-TTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Pairagon CCTCGAAGG------------------------------------------GGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCT-GTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGGTTAGCGGCTAGGGACCTGCTAACCATGCACTTTCTTCCTAGAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCCTCTGGGACAG-TTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgttagcggctagggacctgctaaccatgcactttcttcctagAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCCTCTGGGACAGTTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Exonerate_coding2genome CCTCGAAGGGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAA---GGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGG CCTCGAAGGTTAGCGGCTAGGGACCTGCTAACCATGCACTTTCTTCCTAGAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGgtaaagataaaaagctcctctgggacagttccgaacaagaggtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from GeneWise CCTCGAAGG------------------------------------------GGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGGTTAGCGGCTAGGGACCTGCTAACCATGCACTTTCTTCCTAGAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCCTCTGGGACAGTTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCAC-GTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tttccgaagttgtttagtggcagccaaccctttattttgatctctttcagaATGCAATGCATTGATGTTGAGCAACAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATCGTGGATGGGG-AAAGGGACCTCGAaggcaagtggctagggacctgcttgattctgattaagcctgcagaGGCTGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tttccgaagttgtttagtggcagccaaccctttattttgatctctttcagaATGCAATGCATTGATGTTGAGCAACAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATCGTGGATGGGGAAAGGGACCTCGAaggcaagtggctagggacctgctaaccatgcactttcttcctagaGGCTGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tttccgaagttgtttagtggcagccaaccctttattttgatctctttcagAATGCAATGCATTGATGTTGAGCAACAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATCGTGGATGGGGAAAGGGACCTCGAAGgcaagtggctagggacctgcttgattctgattaagcctgcagAGGCTGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCA-CGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tttccgaagttgtttagtggcagccaaccctttattttgatctctttcagAATGCAATGCATTGATGTTGAGCAACAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATCGTGGATGGGGA-AAGGGACCTCGAAGgcaagtggctagggacctgcttgattctgattaagcctgcagAGGCTGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCA-CGTGGATGGGGACAAGGGTCCTCGAAGG------------------------------------------GGCCGGA tttccgaagttgtttagtggcagccaaccctttattttgatctctttcagAATGCAATGCATTGATGTTGAGCAACAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATCGTGGATGGGGA-AAGGGACCTCGAAGGCAAGTGGCTAGGGACCTGCTTGATTCTGATTAAGCCTGCAGAGGCTGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tttccgaagttgtttagtggcagccaaccctttattttgatctctttcagAATGCAATGCATTGATGTTGAGCAACAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATCGTGGATGGGGAAAGGGACCTCGAAGgcaagtggctagggacctgcttgattctgattaagcctgcagAGGCTGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGGGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCA tttccgaagttgtttagtggcagccaaccctttattttgatctctttcagAATGCAATGCATTGATGTTGAGCAACAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATCGTGGATGGGGAAAGGGACCTCGAAGGCAAGTGGCTAGGGACCTGCTTGATTCTGATTAAGCCTGCAGAGGCTGTA Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGG------------------------------------------GGCCGGA tttccgaagttgtttagtggcagccaaccctttattttgatctctttcagAATGCAATGCATTGATGTTGAGCAACAATTTGACTTCTTGAAAGCACTAGTAGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATCGTGGATGGGGAAAGGGACCTCGAAGGCAAGTGGCTAGGGACCTGCTTGATTCTGATTAAGCCTGCAGAGGCTGTA #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTG-AAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct gttattctgaggtggaattataccacaccacaacatttaaattcttccagcaCAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTCAAGA-GGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACttgtaggtattcccaacctgccaggggtgcttaacagtatggggatgttcca Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct gttattctgaggtggaattataccacaccacaacatttaaattcttccagcaCAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTCAAGAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACttgtaggtattcccaacctgccaggggtgcttaacagtatggggatgttcca Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggaattataccacaccacaacatttaaattcttccagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTCAAGAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaggtattcccaacctgccaggggtgcttaacagtatggggatgttcca Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggaattataccacaccacaacatttaaattcttccagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTCAAGAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaggtattcccaacctgccaggggtgcttaacagtatggggatgttcca Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggaattataccacaccacaacatttaaattcttccagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTCAAGAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaggtattcccaacctgccaggggtgcttaacagtatggggatgttcca Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggaattataccacaccacaacatttaaattcttccagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTCAAGAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaggtattcccaacctgccaggggtgcttaacagtatggggatgttcca Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggaattataccacaccacaacatttaaattcttccagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTCAAGAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaggtattcccaacctgccaggggtgcttaacagtatggggatgttcca Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggaattataccacaccacaacatttaaattcttccagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTCAAGAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaggtattcccaacctgccaggggtgcttaacagtatggggatgttcca #### Drap1_ID988_2 --> 0 - 1 Original Alignment GCGCGGATCAAAAAGATCATGCAGACGGAC-GAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATCGAAG-AATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTtgtaccaacctcaagcccagttattctgaggtggaattataccacacgttc Alignment from CESAR GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATCGAAGAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTtgtaccaacctcaagcccagttattctgaggtggaattataccacaccaca Alignment from Spaln_aa2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATCGAAGAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacacgttc Alignment from Spaln_nt2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATCGAAGAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacacgttc Alignment from Pairagon GCGCGGATCAAAAAGATCATGCAGACGGA-CGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATCGAAGA-ATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacacgttc Alignment from Exonerate_protein2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATCGAAGAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacacgttc Alignment from Exonerate_coding2genome CCGCCGGCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcCCACAGACGCGGATCACAAAGATCATGCAGACAGATCGAAGAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacacgttc Alignment from GeneWise GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATCGAAGAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacacgttc #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAG-AATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG agtatgggaatacagagtcaggaaggattttcacttacttcatgttttaggtATGTTCCAACGGCTGGACAAGCTGCGGAAGCAATG-CTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtgggtcctcagtatgagagcttcatggtgggggcttagaagttttggaa Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG agtatgggaatacagagtcaggaaggattttcacttacttcatgttttaggtATGTTCCAACGGCTGGACAAGCTGCGGAAGCAATGCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtgggtcctcagtatgagagcttcatggtgggggcttagaagttttggaa Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG agtatgggaatacagagtcaggaaggattttcacttacttcatgttttagGTATGTTCCAACGGCTGGACAAGCTGCGGAAGCAATGCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtgggtcctcagtatgagagcttcatggtgggggcttagaagttttggaa Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG agtatgggaatacagagtcaggaaggattttcacttacttcatgttttagGTATGTTCCAACGGCTGGACAAGCTGCGGAAGCAATGCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtgggtcctcagtatgagagcttcatggtgggggcttagaagttttggaa Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG agtatgggaatacagagtcaggaaggattttcacttacttcatgttttagGTATGTTCCAACGGCTGGACAAGCTGCGGAAGCAATGCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtgggtcctcagtatgagagcttcatggtgggggcttagaagttttggaa Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG agtatgggaatacagagtcaggaaggattttcacttacttcatgttttagGTATGTTCCAACGGCTGGACAAGCTGCGGAAGCAATGCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtgggtcctcagtatgagagcttcatggtgggggcttagaagttttggaa Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG agtatgggaatacagagtcaggaaggattttcacttacttcatgttttagGTATGTTCCAACGGCTGGACAAGCTGCGGAAGCAATGCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtgggtcctcagtatgagagcttcatggtgggggcttagaagttttggaa Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG agtatgggaatacagagtcaggaaggattttcacttacttcatgttttagGTATGTTCCAACGGCTGGACAAGCTGCGGAAGCAATGCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtgggtcctcagtatgagagcttcatggtgggggcttagaagttttggaa #### Efemp2_ID1034_7 --> 2 - 1 Original Alignment atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCA-CAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg tctcaaatttcctccatggccaatgactttttattttattatttatttagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTATAAATGAGCCAGGCCAATTCTCCTGCCACTGTCCACCAGG-CTACCAGCTGCTGGCAACTAGGCTCTGCCAAggtaaatggcttgggccgacaaccaacgaaattccaggtcttaccgtgagt Alignment from CESAR atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg tctcaaatttcctccatggccaatgactttttattttattatttatttagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTATAAATGAGCCAGGCCAATTCTCCTGCCACTGTCCACCAGGCTACCAGCTGCTGGCAACTAGGCTCTGCCAAggtaaatggcttgggccgacaaccaacgaaattccaggtcttaccgtgagt Alignment from Spaln_aa2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaatttcctccatggccaatgactttttattttattatttatttagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTATAAATGAGCCAGGCCAATTCTCCTGCCACTGTCCACCAGGCTACCAGCTGCTGGCAACTAGGCTCTGCCAAGgtaaatggcttgggccgacaaccaacgaaattccaggtcttaccgtgagt Alignment from Spaln_nt2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaatttcctccatggccaatgactttttattttattatttatttagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTATAAATGAGCCAGGCCAATTCTCCTGCCACTGTCCACCAGGCTACCAGCTGCTGGCAACTAGGCTCTGCCAAGgtaaatggcttgggccgacaaccaacgaaattccaggtcttaccgtgagt Alignment from Pairagon ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaatttcctccatggccaatgactttttattttattatttatttagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTATAAATGAGCCAGGCCAATTCTCCTGCCACTGTCCACCAGGCTACCAGCTGCTGGCAACTAGGCTCTGCCAAGgtaaatggcttgggccgacaaccaacgaaattccaggtcttaccgtgagt Alignment from Exonerate_protein2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaatttcctccatggccaatgactttttattttattatttatttagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTATAAATGAGCCAGGCCAATTCTCCTGCCACTGTCCACCAGGCTACCAGCTGCTGGCAACTAGGCTCTGCCAAGgtaaatggcttgggccgacaaccaacgaaattccaggtcttaccgtgagt Alignment from Exonerate_coding2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaatttcctccatggccaatgactttttattttattatttatttagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTATAAATGAGCCAGGCCAATTCTCCTGCCACTGTCCACCAGGCTACCAGCTGCTGGCAACTAGGCTCTGCCAAGgtaaatggcttgggccgacaaccaacgaaattccaggtcttaccgtgagt Alignment from GeneWise ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG tctcaaatttcctccatggccaatgactttttattttattatttatttagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTATAAATGAGCCAGGCCAATTCTCCTGCCACTGTCCACCAGGCTACCAGCTGCTGGCAACTAGGCTCTGCCAAGgtaaatggcttgggccgacaaccaacgaaattccaggtcttaccgtgagt #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTG-GTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tttttcatagtaggccagaaaggagcacatactttcctctttctttttagaaTGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTCGTGTCTTTAG-AAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGgtgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tttttcatagtaggccagaaaggagcacatactttcctctttctttttagaaTGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTCGTGTCTTTAGAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGgtgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTCGTGTCTTTAGAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTG-GTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTCGTGTCTTTAG-AAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTG----------------AACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGG----------------GACTTCGTGTCTTTAGAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTCGTGTCTTTAGAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGC tttttcatagtaggccagaaaggagcacatactttcctctttctttttagaatggcatacaacagttgcacagcagcactgtgaacaactcctccttgagggacttcgtgtctttagaaaccagagggaagagctagttggggatttagatcagaaggagcaggtgtaagaacatgaacatgttttggccaGGGGAATGCCTATTGAGGCCCAAG Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTCGTGTCTTTAGAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCA-GCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag ggatggcaatccaaacctccaaaagccattcttgtttcttgtctttcaagctGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCCGCCCCGGTAAGTGCCCCTGCGCCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCACACTGCCA-GACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGGGACTCCACCTGAGACAaagtaggaatcatctcagcttctcaggcaagattgcgccattgcagtgtcta Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag ggatggcaatccaaacctccaaaagccattcttgtttcttgtctttcaagctGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCCGCCCCGGTAAGTGCCCCTGCGCCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCACACTGCCAGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGGGACTCCACCTGAGACAaagtaggaatcatctcagcttctcaggcaagattgcgccattgcagtgtcta Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggatggcaatccaaacctccaaaagccattcttgtttcttgtctttcaagCTGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCCGCCCCGGTAAGTGCCCCTGCGCCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCACACTGCCAGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGGGACTCCACCTGAGACAAAgtaggaatcatctcagcttctcaggcaagattgcgccattgcagtgtcta Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAG-CTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggatggcaatccaaacctccaaaagccattcttgtttcttgtctttcaagCTGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCCGCCCCGGTAAGTGCCCCTGCGCCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCACACTGCCA-GACTGATGG---AGTGGGGCATGAGACCCTAGAGCCCCCAGGGACTCCACCTGAGACAAAgtaggaatcatctcagcttctcaggcaagattgcgccattgcagtgtcta Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAG-----------------------GTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggatggcaatccaaacctccaaaagccattcttgtttcttgtctttcaagCTGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCCGCCCCGGTAAGTGCCCCTGCGCCCCAAGTTAGAGCAATCCGGGGCCAAGGG-----------------------------GATCCACACTGCCAGACTGATGGAGTGGGGCATGAGACCCTAGAGCCCCCAGGGACTCCACCTGAGACAAAgtaggaatcatctcagcttctcaggcaagattgcgccattgcagtgtcta Alignment from Exonerate_protein2genome ggatggcaatccaaacctccaaaagccattcttgtttcttgtctttcaagctgctagaccctctagtgctgaaaagacaagtcccgccccggtaagtgcccctgcgccccaagttagagcaatccggggccaaggggatccacactgccagactgatggagtggggcatgagaccctagagcccccagggactccacctgagacaaagtaggaatcatctcagcttctcaggcaagattgcgccattgcagtgtcta Alignment from Exonerate_coding2genome ggatggcaatccaaacctccaaaagccattcttgtttcttgtctttcaagctgctagaccctctagtgctgaaaagacaagtcccgccccggtaagtgcccctgcgccccaagttagagcaatccggggccaaggggatccacactgccagactgatggagtggggcatgagaccctagagcccccagggactccacctgagacaaagtaggaatcatctcagcttctcaggcaagattgcgccattgcagtgtcta Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggatggcaatccaaacctccaaaagccattcttgtttcttgtctttcaagCTGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCCGCCCCGGTAAGTGCCCCTGCGCCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCACACTGCCAGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGGGACTCCACCTGAGACAAAgtaggaatcatctcagcttctcaggcaagattgcgccattgcagtgtcta #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGG-AAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctctcccacccctgccagagtgtaggacttttaaaaaataatcaatatagGAGTCAAAGGGACAGCGGCAAAGTATTAG-CACAGTTGGTGTCATTTCAGACCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTAGCCTCACACTTGCTGTC---CTTCTACAAGAAGGCCGTGCCatgtaaatgtacctttatgcaggcagttttacactgaggctgggcagcatgc Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctctcccacccctgccagagtgtaggacttttaaaaaataatcaatatagGAGTCAAAGGGACAGCGGCAAAGTATTAGCACAGTTGGTGTCATTTCAGACCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTAGCCTCACACTTGCT---GTCCTTCTACAAGAAGGCCGTGCCatgtaaatgtacctttatgcaggcagttttacactgaggctgggcagcatgc Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctctcccacccctgccagagtgtaggacttttaaaaaataatcaatatagGAGTCAAAGGGACAGCGGCAAAGTATTAGCACAGTTGGTGTCATTTCAGACCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTAGCCTCACACTTGCT---GTCCTTCTACAAGAAGGCCGTGCCATgtaaatgtacctttatgcaggcagttttacactgaggctgggcagcatgc Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctctcccacccctgccagagtgtaggacttttaaaaaataatcaatatagGAGTCAAAGGGACAGCGGCAAAGTATTAGCACAGTTGGTGTCATTTCAGACCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTAGCCTCACACTTGCT---GTCCTTCTACAAGAAGGCCGTGCCATgtaaatgtacctttatgcaggcagttttacactgaggctgggcagcatgc Alignment from Pairagon GAGTCCAAGGGACAGCGG-AAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctctcccacccctgccagagtgtaggacttttaaaaaataatcaatatagGAGTCAAAGGGACAGCGGCAAAGTATTAG-CACAGTTGGTGTCATTTCAGACCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTAGCCTCACACTTGCT---GTCCTTCTACAAGAAGGCCGTGCCATgtaaatgtacctttatgcaggcagttttacactgaggctgggcagcatgc Alignment from Exonerate_protein2genome ctctcccacccctgccagagtgtaggacttttaaaaaataatcaatataggagtcaaagggacagcggcaaagtattagcacagttggtgtcatttcagaccatcatgcaggtcccctacctggccagatctcacttcaattgcggcagaagcccaagtccatcaaagttgtacacgctgagcttagcctcacacttgctgtccttctacaagaaggccgtgccatgtaaatgtacctttatgcaggcagttttacactgaggctgggcagcatgc Alignment from Exonerate_coding2genome ctctcccacccctgccagagtgtaggacttttaaaaaataatcaatataggagtcaaagggacagcggcaaagtattagcacagttggtgtcatttcagaccatcatgcaggtcccctacctggccagatctcacttcaattgcggcagaagcccaagtccatcaaagttgtacacgctgagcttagcctcacacttgctgtccttctacaagaaggccgtgccatgtaaatgtacctttatgcaggcagttttacactgaggctgggcagcatgc Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctctcccacccctgccagagtgtaggacttttaaaaaataatcaatatagGAGTCAAAGGGACAGCGGCAAAGTATTAGCACAGTTGGTGTCATTTCAGACCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTAGCCTCACACTTGCT---GTCCTTCTACAAGAAGGCCGTGCCATgtaaatgtacctttatgcaggcagttttacactgaggctgggcagcatgc #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCC-TCCAAATACCGCAAGAACATCTGGATCAAGAGAg acaatgcaaattctagataatgagtgattctttttctttgctgtcttcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCCTCCAAAT-CCGTAAGAACATCTGGATCAAGAGAggtaagttctttttgctttttcaactaccaaacatgataccaccttgtccc Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg acaatgcaaattctagataatgagtgattctttttctttgctgtcttcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCCTCCAAATCCGTAAGAACATCTGGATCAAGAGAggtaagttctttttgctttttcaactaccaaacatgataccaccttgtccc Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattctttttctttgctgtcttcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCCTCCAAATCCGTAAGAACATCTGGATCAAGAGAGgtaagttctttttgctttttcaactaccaaacatgataccaccttgtccc Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattctttttctttgctgtcttcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCCTCCAAATCCGTAAGAACATCTGGATCAAGAGAGgtaagttctttttgctttttcaactaccaaacatgataccaccttgtccc Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattctttttctttgctgtcttcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCCTCCAAATCCGTAAGAACATCTGGATCAAGAGAGgtaagttctttttgctttttcaactaccaaacatgataccaccttgtccc Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattctttttctttgctgtcttcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCCTCCAAATCCGTAAGAACATCTGGATCAAGAGAGgtaagttctttttgctttttcaactaccaaacatgataccaccttgtccc Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattctttttctttgctgtcttcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCCTCCAAATCCGTAAGAACATCTGGATCAAGAGAGgtaagttctttttgctttttcaactaccaaacatgataccaccttgtccc Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaattctagataatgagtgattctttttctttgctgtcttcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCAACGCTTCCTGGTCAGCATGCCCCTCCAAATCCGTAAGAACATCTGGATCAAGAGAGgtaagttctttttgctttttcaactaccaaacatgataccaccttgtccc #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCT-CTACAGAAGGAGGGTCACtg aatgatgcctcatgctgctcaacacaaagactatgtcttcatgatcttagggGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATCTCGTTTGTACTCTGCAAGAACCATGTTCACACCCCTGC-GAAGGAGGGCCAAtggtgagtcagtctccctgtgcccctgctcagtgaagcagtgagagagttgt Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatgatgcctcatgctgctcaacacaaagactatgtcttcatgatcttagggGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATCTCGTTTGTACTCTGCAAGAACCATGTTCACACCCCTGCGAAGGAGGGCCAAtggtgagtcagtctccctgtgcccctgctcagtgaagcagtgagagagttgt Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcctcatgctgctcaacacaaagactatgtcttcatgatcttagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATCTCGTTTGTACTCTGCAAGAACCATGTTCACACCCCTGCGAAGGAGGGCCAATGgtgagtcagtctccctgtgcccctgctcagtgaagcagtgagagagttgt Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcctcatgctgctcaacacaaagactatgtcttcatgatcttagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATCTCGTTTGTACTCTGCAAGAACCATGTTCACACCCCTGCGAAGGAGGGCCAATGgtgagtcagtctccctgtgcccctgctcagtgaagcagtgagagagttgt Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcctcatgctgctcaacacaaagactatgtcttcatgatcttagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATCTCGTTTGTACTCTGCAAGAACCATGTTCACACCCCTGCGAAGGAGGGCCAATGgtgagtcagtctccctgtgcccctgctcagtgaagcagtgagagagttgt Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcctcatgctgctcaacacaaagactatgtcttcatgatcttagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATCTCGTTTGTACTCTGCAAGAACCATGTTCACACCCCTGCGAAGGAGGGCCAATGgtgagtcagtctccctgtgcccctgctcagtgaagcagtgagagagttgt Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcctcatgctgctcaacacaaagactatgtcttcatgatcttagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATCTCGTTTGTACTCTGCAAGAACCATGTTCACACCCCTGCGAAGGAGGGCCAATGgtgagtcagtctccctgtgcccctgctcagtgaagcagtgagagagttgt Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcctcatgctgctcaacacaaagactatgtcttcatgatcttagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATCTCGTTTGTACTCTGCAAGAACCATGTTCACACCCCTGCGAAGGAGGGCCAATGgtgagtcagtctccctgtgcccctgctcagtgaagcagtgagagagttgt #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCA-TATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttagactagaaatctgggagtcattacacgtgggtcatgtctcaccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCACTATTTGAAGT-AGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgagccccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttagactagaaatctgggagtcattacacgtgggtcatgtctcaccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCACTATTTGAAGTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgagccccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactagaaatctgggagtcattacacgtgggtcatgtctcaccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCACTATTTGAAGTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgagccccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactagaaatctgggagtcattacacgtgggtcatgtctcaccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCACTATTTGAAGTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgagccccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCA-TATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactagaaatctgggagtcattacacgtgggtcatgtctcaccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCACTATTTGAAG-TAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgagccccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactagaaatctgggagtcattacacgtgggtcatgtctcaccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCACTATTTGAAGTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgagccccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactagaaatctgggagtcattacacgtgggtcatgtctcaccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCACTATTTGAAGTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgagccccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactagaaatctgggagtcattacacgtgggtcatgtctcaccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCACTATTTGAAGTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgagccccaggacactaatctcacatttgcaaatcaataaacatgttac #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGC-CGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gtgccaagtgctctcctaaaagaagggtcccctttgcattccattcttagaaGGGATCTCAGTGAAGATGTTCCTTTGTGGCCCGTCCCA-TACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCTTGACCCTTGAATGGgtgtaagcggttgaaactgtcacacacagcagaaaggctggcatttttgtgg Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gtgccaagtgctctcctaaaagaagggtcccctttgcattccattcttagaaGGGATCTCAGTGAAGATGTTCCTTTGTGGCCCGTCCCATACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCTTGACCCTTGAATGGgtgtaagcggttgaaactgtcacacacagcagaaaggctggcatttttgtgg Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggtcccctttgcattccattcttagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCCGTCCCATACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCTTGACCCTTGAATGGGTgtaagcggttgaaactgtcacacacagcagaaaggctggcatttttgtgg Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggtcccctttgcattccattcttagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCCGTCCCATACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCTTGACCCTTGAATGGGTgtaagcggttgaaactgtcacacacagcagaaaggctggcatttttgtgg Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGG-CCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggtcccctttgcattccattcttagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCCGTCCCAT-ACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCTTGACCCTTGAATGGGTgtaagcggttgaaactgtcacacacagcagaaaggctggcatttttgtgg Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggtcccctttgcattccattcttagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCCGTCCCATACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCTTGACCCTTGAATGGGTgtaagcggttgaaactgtcacacacagcagaaaggctggcatttttgtgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggtcccctttgcattccattcttagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCCGTCCCATACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCTTGACCCTTGAATGGGTgtaagcggttgaaactgtcacacacagcagaaaggctggcatttttgtgg #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGAC-TCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gatcattgatcaagttttctgtccttctccctgccctctcttaaccacagCCCCTGCAGCCGGTGGTTCATACCTGGGACCTCAGAAA-ACTCCTAAAACTGCAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtatggcagggatggcaacatgtgtgtgaccccattgtcttgtttattaa Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gatcattgatcaagttttctgtccttctccctgccctctcttaaccacagCCCCTGCAGCCGGTGGTTCATACCTGGGACCTCAGAAAACTCCTAAAACTGCAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtatggcagggatggcaacatgtgtgtgaccccattgtcttgtttattaa Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gatcattgatcaagttttctgtccttctccctgccctctcttaaccacagCCCCTGCAGCCGGTGGTTCATACCTGGGACCTCAGAAAACTCCTAAAACTGCAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtatggcagggatggcaacatgtgtgtgaccccattgtcttgtttattaa Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gatcattgatcaagttttctgtccttctccctgccctctcttaaccacagCCCCTGCAGCCGGTGGTTCATACCTGGGACCTCAGAAAACTCCTAAAACTGCAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtatggcagggatggcaacatgtgtgtgaccccattgtcttgtttattaa Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGA-CTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gatcattgatcaagttttctgtccttctccctgccctctcttaaccacagCCCCTGCAGCCGGTGGTTCATACCTGGGACCTCAGAAA-ACTCCTAAAACTGCAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtatggcagggatggcaacatgtgtgtgaccccattgtcttgtttattaa Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gatcattgatcaagttttctgtccttctccctgccctctcttaaccacagCCCCTGCAGCCGGTGGTTCATACCTGGGACCTCAGAAAACTCCTAAAACTGCAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtatggcagggatggcaacatgtgtgtgaccccattgtcttgtttattaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gatcattgatcaagttttctgtccttctccctgccctctcttaaccacagCCCCTGCAGCCGGTGGTTCATACCTGGGACCTCAGAAAACTCCTAAAACTGCAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtatggcagggatggcaacatgtgtgtgaccccattgtcttgtttattaa #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCAC-GAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG attataatccatgatatggcgaatgctctgtaaattctttctccccttagaaACCTACACAATTGTGGCCCAACCCCATGCTCATCGAGGAGT-CTTCTTTGCACTCTGTCTTCATCAGGATGGAACAGTACTCACTGGTGGCGGGTGGCATAGACGTCTAGTGCAGTGGGGGCCTGGGCTGGTGGCACTCCAGGAGGCAGAGgtgagtcttgatctgggcccggagaataggaatggatggggagacatggg Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG attataatccatgatatggcgaatgctctgtaaattctttctccccttagaaACCTACACAATTGTGGCCCAACCCCATGCTCATCGAGGAGTCTTCTTTGCACTCTGTCTTCATCAGGATGGAACAGTACTCACTGGTGGCGGGTGGCATAGACGTCTAGTGCAGTGGGGGCCTGGGCTGGTGGCACTCCAGGAGGCAGAGgtgagtcttgatctgggcccggagaataggaatggatggggagacatggg Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG attataatccatgatatggcgaatgctctgtaaattctttctccccttagAAACCTACACAATTGTGGCCCAACCCCATGCTCATCGAGGAGTCTTCTTTGCACTCTGTCTTCATCAGGATGGAACAGTACTCACTGGTGGCGGGTGGCATAGACGTCTAGTGCAGTGGGGGCCTGGGCTGGTGGCACTCCAGGAGGCAGAGgtgagtcttgatctgggcccggagaataggaatggatggggagacatggg Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG attataatccatgatatggcgaatgctctgtaaattctttctccccttagAAACCTACACAATTGTGGCCCAACCCCATGCTCATCGAGGAGTCTTCTTTGCACTCTGTCTTCATCAGGATGGAACAGTACTCACTGGTGGCGGGTGGCATAGACGTCTAGTGCAGTGGGGGCCTGGGCTGGTGGCACTCCAGGAGGCAGAGgtgagtcttgatctgggcccggagaataggaatggatggggagacatggg Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCA-CGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG attataatccatgatatggcgaatgctctgtaaattctttctccccttagAAACCTACACAATTGTGGCCCAACCCCATGCTCATCGAGGAGTCT-TCTTTGCACTCTGTCTTCATCAGGATGGAACAGTACTCACTGGTGGCGGGTGGCATAGACGTCTAGTGCAGTGGGGGCCTGGGCTGGTGGCACTCCAGGAGGCAGAGgtgagtcttgatctgggcccggagaataggaatggatggggagacatggg Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG attataatccatgatatggcgaatgctctgtaaattctttctccccttagAAACCTACACAATTGTGGCCCAACCCCATGCTCATCGAGGAGTCTTCTTTGCACTCTGTCTTCATCAGGATGGAACAGTACTCACTGGTGGCGGGTGGCATAGACGTCTAGTGCAGTGGGGGCCTGGGCTGGTGGCACTCCAGGAGGCAGAGgtgagtcttgatctgggcccggagaataggaatggatggggagacatggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG attataatccatgatatggcgaatgctctgtaaattctttctccccttagAAACCTACACAATTGTGGCCCAACCCCATGCTCATCGAGGAGTCTTCTTTGCACTCTGTCTTCATCAGGATGGAACAGTACTCACTGGTGGCGGGTGGCATAGACGTCTAGTGCAGTGGGGGCCTGGGCTGGTGGCACTCCAGGAGGCAGAGgtgagtcttgatctgggcccggagaataggaatggatggggagacatggg #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGA-ACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGCACCACAA-GAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGCACCACAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGCACCACAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGCACCACAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGA-ACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGCACCAC-AAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGCACCACAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Exonerate_coding2genome ggatggggagacatgggaaatagtataatgacattgtgttttatttctaggtgccagaacatttcggttcagtaagtgcgattgctgatggacttggagctgaactactggtggggcaccacaagaatgccttactaagagcagatcttgcccaaggtttctctccagtaatccaggtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGCACCACAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc #### Eml3_ID2517_16 --> 0 - 2 Original Alignment GAGACGGGTTTATGTGCTGACTTCCAC-CCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGag ttcaacttattctccaatcctcatgaacgcatgcctgtttatcattgtagGAGACAGGTTTATGTGCTGACTTCCACCCCAAGTG-GGCAGTTGTGGTCATAGGACTGAACACTGGGaggtaactgagtgaacaccatggaaactaaagagggtgatccatccagggat Alignment from CESAR GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGag ttcaacttattctccaatcctcatgaacgcatgcctgtttatcattgtagGAGACAGGTTTATGTGCTGACTTCCACCCCAAGTGGGCAGTTGTGGTCATAGGACTGAACACTGGGaggtaactgagtgaacaccatggaaactaaagagggtgatccatccagggat Alignment from Spaln_aa2Genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG ttcaacttattctccaatcctcatgaacgcatgcctgtttatcattgtagGAGACAGGTTTATGTGCTGACTTCCACCCCAAGTGGGCAGTTGTGGTCATAGGACTGAACACTGGGAGgtaactgagtgaacaccatggaaactaaagagggtgatccatccagggat Alignment from Spaln_nt2Genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG ttcaacttattctccaatcctcatgaacgcatgcctgtttatcattgtagGAGACAGGTTTATGTGCTGACTTCCACCCCAAGTGGGCAGTTGTGGTCATAGGACTGAACACTGGGAGgtaactgagtgaacaccatggaaactaaagagggtgatccatccagggat Alignment from Pairagon GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG ttcaacttattctccaatcctcatgaacgcatgcctgtttatcattgtagGAGACAGGTTTATGTGCTGACTTCCACCCCAAGTGGGCAGTTGTGGTCATAGGACTGAACACTGGGAGgtaactgagtgaacaccatggaaactaaagagggtgatccatccagggat Alignment from Exonerate_protein2genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG ttcaacttattctccaatcctcatgaacgcatgcctgtttatcattgtagGAGACAGGTTTATGTGCTGACTTCCACCCCAAGTGGGCAGTTGTGGTCATAGGACTGAACACTGGGAGgtaactgagtgaacaccatggaaactaaagagggtgatccatccagggat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG ttcaacttattctccaatcctcatgaacgcatgcctgtttatcattgtagGAGACAGGTTTATGTGCTGACTTCCACCCCAAGTGGGCAGTTGTGGTCATAGGACTGAACACTGGGAGgtaactgagtgaacaccatggaaactaaagagggtgatccatccagggat #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCA-GTTGTCCGGTACAGCCCAg aagtgtaaggcaagatcttatctctatgtgacatctctctctttcaacaggTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACAGATGGCAATGAGCAACTCTCACGTTG-CCGGTACAGCCCGggtagccacacttccccatgcctgaatgctgctcggaatcctggcttgttc Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaagatcttatctctatgtgacatctctctctttcaacaggTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACAGATGGCAATGAGCAACTCTCACGTTGCCGGTACAGCCCGggtagccacacttccccatgcctgaatgctgctcggaatcctggcttgttc Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaagatcttatctctatgtgacatctctctctttcaacagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACAGATGGCAATGAGCAACTCTCACGTTGCCGGTACAGCCCGGgtagccacacttccccatgcctgaatgctgctcggaatcctggcttgttc Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaagatcttatctctatgtgacatctctctctttcaacagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACAGATGGCAATGAGCAACTCTCACGTTGCCGGTACAGCCCGGgtagccacacttccccatgcctgaatgctgctcggaatcctggcttgttc Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaagatcttatctctatgtgacatctctctctttcaacagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACAGATGGCAATGAGCAACTCTCACGTTGCCGGTACAGCCCGGgtagccacacttccccatgcctgaatgctgctcggaatcctggcttgttc Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaagatcttatctctatgtgacatctctctctttcaacagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACAGATGGCAATGAGCAACTCTCACGTTGCCGGTACAGCCCGGgtagccacacttccccatgcctgaatgctgctcggaatcctggcttgttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaagatcttatctctatgtgacatctctctctttcaacagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACAGATGGCAATGAGCAACTCTCACGTTGCCGGTACAGCCCGGgtagccacacttccccatgcctgaatgctgctcggaatcctggcttgttc #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGT-TGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG acaaatatgatagcatccagttcacagagactgtccattctctctcctagatGGGTTATACCTTGCAATAGGTTCACATGATAATATGATTTACATATACAGTATTTCCAGTCTGTG-TACCAAATCTACCCGCTTTGGAAGGTGTATGgtaatgtgcctgctgcctgaatgtctacagaacttaaaaacccactgtga Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG acaaatatgatagcatccagttcacagagactgtccattctctctcctagatGGGTTATACCTTGCAATAGGTTCACATGATAATATGATTTACATATACAGTATTTCCAGTCTGTGTACCAAATCTACCCGCTTTGGAAGGTGTATGgtaatgtgcctgctgcctgaatgtctacagaacttaaaaacccactgtga Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG acaaatatgatagcatccagttcacagagactgtccattctctctcctagATGGGTTATACCTTGCAATAGGTTCACATGATAATATGATTTACATATACAGTATTTCCAGTCTGTGTACCAAATCTACCCGCTTTGGAAGGTGTATGgtaatgtgcctgctgcctgaatgtctacagaacttaaaaacccactgtga Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG acaaatatgatagcatccagttcacagagactgtccattctctctcctagATGGGTTATACCTTGCAATAGGTTCACATGATAATATGATTTACATATACAGTATTTCCAGTCTGTGTACCAAATCTACCCGCTTTGGAAGGTGTATGgtaatgtgcctgctgcctgaatgtctacagaacttaaaaacccactgtga Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG acaaatatgatagcatccagttcacagagactgtccattctctctcctagATGGGTTATACCTTGCAATAGGTTCACATGATAATATGATTTACATATACAGTATTTCCAGTCTGTGTACCAAATCTACCCGCTTTGGAAGGTGTATGgtaatgtgcctgctgcctgaatgtctacagaacttaaaaacccactgtga Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG acaaatatgatagcatccagttcacagagactgtccattctctctcctagATGGGTTATACCTTGCAATAGGTTCACATGATAATATGATTTACATATACAGTATTTCCAGTCTGTGTACCAAATCTACCCGCTTTGGAAGGTGTATGgtaatgtgcctgctgcctgaatgtctacagaacttaaaaacccactgtga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG acaaatatgatagcatccagttcacagagactgtccattctctctcctagATGGGTTATACCTTGCAATAGGTTCACATGATAATATGATTTACATATACAGTATTTCCAGTCTGTGTACCAAATCTACCCGCTTTGGAAGGTGTATGgtaatgtgcctgctgcctgaatgtctacagaacttaaaaacccactgtga #### Eno4_ID12833_5 --> 2 - 0 Original Alignment gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAG-CCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatgatttggggctggtcccacaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCGCCCCAAGAGCCCAC-TGAACCAGTTCAGCATGGAAGTATGGCCCTAGGTGCTGTGTTACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtgagttaatattgtgggcatgagtgtggaaaaagagttggtggcagtat Alignment from CESAR gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatgatttggggctggtcccacaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCGCCCCAAGAGCCCACTGAACCAGTTCAGCATGGAAGTATGGCCCTAGGTGCTGTGTTACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtgagttaatattgtgggcatgagtgtggaaaaagagttggtggcagtat Alignment from Spaln_aa2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatgatttggggctggtcccacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCGCCCCAAGAGCCCACTGAACCAGTTCAGCATGGAAGTATGGCCCTAGGTGCTGTGTTACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtgagttaatattgtgggcatgagtgtggaaaaagagttggtggcagtat Alignment from Spaln_nt2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatgatttggggctggtcccacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCGCCCCAAGAGCCCACTGAACCAGTTCAGCATGGAAGTATGGCCCTAGGTGCTGTGTTACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtgagttaatattgtgggcatgagtgtggaaaaagagttggtggcagtat Alignment from Pairagon GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatgatttggggctggtcccacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCGCCCCAAGAGCCCACTGAACCAGTTCAGCATGGAAGTATGGCCCTAGGTGCTGTGTTACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtgagttaatattgtgggcatgagtgtggaaaaagagttggtggcagtat Alignment from Exonerate_protein2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatgatttggggctggtcccacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCGCCCCAAGAGCCCACTGAACCAGTTCAGCATGGAAGTATGGCCCTAGGTGCTGTGTTACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtgagttaatattgtgggcatgagtgtggaaaaagagttggtggcagtat Alignment from Exonerate_coding2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatgatttggggctggtcccacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCGCCCCAAGAGCCCACTGAACCAGTTCAGCATGGAAGTATGGCCCTAGGTGCTGTGTTACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtgagttaatattgtgggcatgagtgtggaaaaagagttggtggcagtat Alignment from GeneWise GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatgatttggggctggtcccacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCGCCCCAAGAGCCCACTGAACCAGTTCAGCATGGAAGTATGGCCCTAGGTGCTGTGTTACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTCTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtgagttaatattgtgggcatgagtgtggaaaaagagttggtggcagtat #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACC---TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtatctaggggggatttgttttgtcctttcaagGGTCAGGCAGGTTGGCTGCAGCATCGACTTTGGGC-TTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtaagtactgaagttatgtcagtatatcgttaagtctttgtacactgcag Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtatctaggggggatttgttttgtcctttcaagGGTCAGGCAGGTTGGCTGCAGCATCGACTTTGGGCTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtaagtactgaagttatgtcagtatatcgttaagtctttgtacactgcag Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGC---ACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtatctaggggggatttgttttgtcctttcaagGGTCAGGCAGGTTGGCTGCAGCATCGACTTTGGGCTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtaagtactgaagttatgtcagtatatcgttaagtctttgtacactgcag Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtatctaggggggatttgttttgtcctttcaagGGTCAGGCAGGTTGGCTGCAGCATCGACTTTGGGCTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtaagtactgaagttatgtcagtatatcgttaagtctttgtacactgcag Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtatctaggggggatttgttttgtcctttcaagGGTCAGGCAGGTTGGCTGCAGCATCGACTTTGGGC-TTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtaagtactgaagttatgtcagtatatcgttaagtctttgtacactgcag Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtatctaggggggatttgttttgtcctttcaagGGTCAGGCAGGTTGGCTGCAGCATCGACTTTGGGCTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtaagtactgaagttatgtcagtatatcgttaagtctttgtacactgcag Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtatctaggggggatttgttttgtcctttcaagGGTCAGGCAGGTTGGCTGCAGCATCGACTTTGGGCTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtaagtactgaagttatgtcagtatatcgttaagtctttgtacactgcag Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtatctaggggggatttgttttgtcctttcaagGGTCAGGCAGGTTGGCTGCAGCATCGACTTTGGGCTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtaagtactgaagttatgtcagtatatcgttaagtctttgtacactgcag #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTC-TTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGC---CTTTTCTTCATTGTCag caatcctttgaaaaaacaaaaaccctgcaaatcctagcctttgtccccagGATTTGGCCTGGATGGTTAGTTTCTACGCTCACATCTTTCTTAGCCT-TATATCACTCTCAGGGTTGAAGGGCTTCTTGGGGCTCATCTTCTTCATTGTTaggtattgacaagcagtgagtttaaaatagtaagcccaaacaccaccagaac Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTT---TTCTTCATTGTCag caatcctttgaaaaaacaaaaaccctgcaaatcctagcctttgtccccagGATTTGGCCTGGATGGTTAGTTTCTACGCTCACATCTTTCTTAGCCTTATATCACTCTCAGGGTTGAAGGGCTTCTTGGGGCTCATCTTCTTCATTGTTaggtattgacaagcagtgagtttaaaatagtaagcccaaacaccaccagaac Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTT---TTCTTCATTGTCAG caatcctttgaaaaaacaaaaaccctgcaaatcctagcctttgtccccagGATTTGGCCTGGATGGTTAGTTTCTACGCTCACATCTTTCTTAGCCTTATATCACTCTCAGGGTTGAAGGGCTTCTTGGGGCTCATCTTCTTCATTGTTAGgtattgacaagcagtgagtttaaaatagtaagcccaaacaccaccagaac Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTT---TTCTTCATTGTCAG caatcctttgaaaaaacaaaaaccctgcaaatcctagcctttgtccccagGATTTGGCCTGGATGGTTAGTTTCTACGCTCACATCTTTCTTAGCCTTATATCACTCTCAGGGTTGAAGGGCTTCTTGGGGCTCATCTTCTTCATTGTTAGgtattgacaagcagtgagtttaaaatagtaagcccaaacaccaccagaac Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCT-----------TCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCC---TTTTCTTCATTGTCAG caatcctttgaaaaaacaaaaaccctgcaaatcctagcctttgtccccagGATTTGGCCTGGATGGTTAGTTTCTACGCTCACATCTTTCTTAGCCTTATATCACTCTCA-----------GGGTTGAAGGGCTTCTTGGGGCTCATCTTCTTCATTGTTAGgtattgacaagcagtgagtttaaaatagtaagcccaaacaccaccagaac Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTT---TTCTTCATTGTCAG caatcctttgaaaaaacaaaaaccctgcaaatcctagcctttgtccccagGATTTGGCCTGGATGGTTAGTTTCTACGCTCACATCTTTCTTAGCCTTATATCACTCTCAGGGTTGAAGGGCTTCTTGGGGCTCATCTTCTTCATTGTTAGgtattgacaagcagtgagtttaaaatagtaagcccaaacaccaccagaac Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTT---TTCTTCATTGTCAG caatcctttgaaaaaacaaaaaccctgcaaatcctagcctttgtccccagGATTTGGCCTGGATGGTTAGTTTCTACGCTCACATCTTTCTTAGCCTTATATCACTCTCAGGGTTGAAGGGCTTCTTGGGGCTCATCTTCTTCATTGTTAGgtattgacaagcagtgagtttaaaatagtaagcccaaacaccaccagaac Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTT---TTCTTCATTGTCAG caatcctttgaaaaaacaaaaaccctgcaaatcctagcctttgtccccagGATTTGGCCTGGATGGTTAGTTTCTACGCTCACATCTTTCTTAGCCTTATATCACTCTCAGGGTTGAAGGGCTTCTTGGGGCTCATCTTCTTCATTGTTAGgtattgacaagcagtgagtttaaaatagtaagcccaaacaccaccagaac #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTG-CTCCTCTTTGTTGCTGTCag ttgaacaggcaaagtgattccagtttagtagtttaattatcttcccacagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACTGGGACACTACATCC-CTTTGTCGTTGTGcggtgagttgctacttgctgagcaccaaatctatttaactcccttggcctta Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttgaacaggcaaagtgattccagtttagtagtttaattatcttcccacagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACTGGGACACTACATCCCTTTGTCGTTGTGcggtgagttgctacttgctgagcaccaaatctatttaactcccttggcctta Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttgaacaggcaaagtgattccagtttagtagtttaattatcttcccacagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgctacttgctgagcaccaaatctatttaactcccttggcctta Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttgaacaggcaaagtgattccagtttagtagtttaattatcttcccacagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgctacttgctgagcaccaaatctatttaactcccttggcctta Alignment from Pairagon -------------------------------------------------GGACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG TTGAACAGGCAAAGTGATTCCAGTTTAGTAGTTTAATTATCTTCCCACAGGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgctacttgctgagcaccaaatctatttaactcccttggcctta Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttgaacaggcaaagtgattccagtttagtagtttaattatcttcccacagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgctacttgctgagcaccaaatctatttaactcccttggcctta Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttgaacaggcaaagtgattccagtttagtagtttaattatcttcccacagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgctacttgctgagcaccaaatctatttaactcccttggcctta Alignment from GeneWise ----------CAGTGGACGGACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttgaacaggcaaagtgattccagtttagtagTTTAATTATCTTCCCACAGGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACTGGGACACTACATCCCTTTGTCGTTGTGCGgtgagttgctacttgctgagcaccaaatctatttaactcccttggcctta #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGG-TTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG ttgagtcatctcgattgaatgattccattgatttttgtgtgtccctgcaggGTCTTGGAGAGCCAGTGGCTTTGTGT-GATCACACAGATGAACCATATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaagtctcttgagtgcttaagtgcatactagtggcaaaagtgtctgtgc Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG ttgagtcatctcgattgaatgattccattgatttttgtgtgtccctgcaggGTCTTGGAGAGCCAGTGGCTTTGTGTGATCACACAGATGAACCATATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaagtctcttgagtgcttaagtgcatactagtggcaaaagtgtctgtgc Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG ttgagtcatctcgattgaatgattccattgatttttgtgtgtccctgcagGGTCTTGGAGAGCCAGTGGCTTTGTGTGATCACACAGATGAACCATATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaagtctcttgagtgcttaagtgcatactagtggcaaaagtgtctgtgc Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG ttgagtcatctcgattgaatgattccattgatttttgtgtgtccctgcagGGTCTTGGAGAGCCAGTGGCTTTGTGTGATCACACAGATGAACCATATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaagtctcttgagtgcttaagtgcatactagtggcaaaagtgtctgtgc Alignment from Pairagon GGTGCTGGAGAGCCACTGG-TTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG ttgagtcatctcgattgaatgattccattgatttttgtgtgtccctgcagGGTCTTGGAGAGCCAGTGGCTTTGTGT-GATCACACAGATGAACCATATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaagtctcttgagtgcttaagtgcatactagtggcaaaagtgtctgtgc Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG ttgagtcatctcgattgaatgattccattgatttttgtgtgtccctgcagGGTCTTGGAGAGCCAGTGGCTTTGTGTGATCACACAGATGAACCATATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaagtctcttgagtgcttaagtgcatactagtggcaaaagtgtctgtgc Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG ttgagtcatctcgattgaatgattccattgatttttgtgtgtccctgcagGGTCTTGGAGAGCCAGTGGCTTTGTGTGATCACACAGATGAACCATATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaagtctcttgagtgcttaagtgcatactagtggcaaaagtgtctgtgc Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG ttgagtcatctcgattgaatgattccattgatttttgtgtgtccctgcagGGTCTTGGAGAGCCAGTGGCTTTGTGTGATCACACAGATGAACCATATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaagtctcttgagtgcttaagtgcatactagtggcaaaagtgtctgtgc #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTC-AATTTCCAGATTGAGCACca caaggcagtgcaacagccgtcttcaattttcaccataaactttttttcagCTGGCTGCAACT------------TCATCGCTCTTTATTGACTGGTTCAGCGGTCACCTTCAATT-TCAAATTGAACACttgtgagaattgcatcgaggggtgagtggcaaacatagctgctgttagtgta Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca caaggcagtgcaacagccgtcttcaattttcaccataaactttttttcagCTGGCTGCAACT------------TCATCGCTCTTTATTGACTGGTTCAGCGGTCACCTTCAATTTCAAATTGAACACttgtgagaattgcatcgaggggtgagtggcaaacatagctgctgttagtgta Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA caaggcagtgcaacagccgtcttcaattttcaccataaactttttttcagCTGGCTGCAACT------------TCATCGCTCTTTATTGACTGGTTCAGCGGTCACCTTCAATTTCAAATTGAACACTTgtgagaattgcatcgaggggtgagtggcaaacatagctgctgttagtgta Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA caaggcagtgcaacagccgtcttcaattttcaccataaactttttttcagCTGGCTGCAACTT------------CATCGCTCTTTATTGACTGGTTCAGCGGTCACCTTCAATTTCAAATTGAACACTTgtgagaattgcatcgaggggtgagtggcaaacatagctgctgttagtgta Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA caaggcagtgcaacagccgtcttcaattttcaccataaactttttttcagCTGGCTGCAACTT------------CATCGCTCTTTATTGACTGGTTCAGCGGTCACCTTCAATTTCAAATTGAACACTTgtgagaattgcatcgaggggtgagtggcaaacatagctgctgttagtgta Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA caaggcagtgcaacagccgtcttcaattttcaccataaACTTTTTTTCAGCTGGCTGCAACTTCATCGCTCTTTATTGACTGGTTCAGCGGTCACCTTCAATTTCAAATTGAACACTTgtgagaattgcatcgaggggtgagtggcaaacatagctgctgttagtgta Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA caaggcagtgcaacagccgtcttcaattttcaccataaACTTTTTTTCAGCTGGCTGCAACTTCATCGCTCTTTATTGACTGGTTCAGCGGTCACCTTCAATTTCAAATTGAACACTTgtgagaattgcatcgaggggtgagtggcaaacatagctgctgttagtgta Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA caaggcagtgcaacagccgtcttcaattttcaccataaactttttttcagCTGGCTGCAACT------------TCATCGCTCTTTATTGACTGGTTCAGCGGTCACCTTCAATTTCAAATTGAACACTTgtgagaattgcatcgaggggtgagtggcaaacatagctgctgttagtgta #### Fads3_ID2668_11 --> 1 - 2 Original Alignment cCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGG-GTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCgg caagataacatcattatgggggtatcacctgtggttgctggctgccgcagcCTTGTTCCTACTATGTCCAGGCACAACTACCGGAGACGTGGCACCCC-TGTTGAGGCATTCTGTGCTACACATGGACTACACCGTAAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTgggtaagcagatgtttggagccaagcaacctgggtccaacttcataagtatt Alignment from CESAR cCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCgg caagataacatcattatgggggtatcacctgtggttgctggctgccgcagcCTTGTTCCTACTATGTCCAGGCACAACTACCGGAGACGTGGCACCCCTGTTGAGGCATTCTGTGCTACACATGGACTACACCGTAAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTgggtaagcagatgtttggagccaagcaacctgggtccaacttcataagtatt Alignment from Spaln_aa2Genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcattatgggggtatcacctgtggttgctggctgccgcagCCTTGTTCCTACTATGTCCAGGCACAACTACCGGAGACGTGGCACCCCTGTTGAGGCATTCTGTGCTACACATGGACTACACCGTAAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtaagcagatgtttggagccaagcaacctgggtccaacttcataagtatt Alignment from Spaln_nt2Genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGG-GTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcattatgggggtatcacctgtggttgctggctgccgcagCCTTGTTCCTACTATGTCCAGGCACAACTACCGGAGACGTGGCACCCCT-GTTGAGGCATTCTGTGCTACACATGGACTACACCGTAAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtaagcagatgtttggagccaagcaacctgggtccaacttcataagtatt Alignment from Pairagon CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGG-GTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcattatgggggtatcacctgtggttgctggctgccgcagCCTTGTTCCTACTATGTCCAGGCACAACTACCGGAGACGTGGCACCCCT-GTTGAGGCATTCTGTGCTACACATGGACTACACCGTAAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtaagcagatgtttggagccaagcaacctgggtccaacttcataagtatt Alignment from Exonerate_protein2genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcattatgggggtatcacctgtggttgctggctgccgcagCCTTGTTCCTACTATGTCCAGGCACAACTACCGGAGACGTGGCACCCCTGTTGAGGCATTCTGTGCTACACATGGACTACACCGTAAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtaagcagatgtttggagccaagcaacctgggtccaacttcataagtatt Alignment from Exonerate_coding2genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcattatgggggtatcacctgtggttgctggctgccgcagCCTTGTTCCTACTATGTCCAGGCACAACTACCGGAGACGTGGCACCCCTGTTGAGGCATTCTGTGCTACACATGGACTACACCGTAAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtaagcagatgtttggagccaagcaacctgggtccaacttcataagtatt Alignment from GeneWise CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG caagataacatcattatgggggtatcacctgtggttgctggctgccgcagCCTTGTTCCTACTATGTCCAGGCACAACTACCGGAGACGTGGCACCCCTGTTGAGGCATTCTGTGCTACACATGGACTACACCGTAAGGTAAAGCCATTTCTTATGGCATTGGTGGAGATCATTGGgtaagcagatgtttggagccaagcaacctgggtccaacttcataagtatt #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG attttttccgttgcatctggttataattttctgtctcccccccacctcaggTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCACGGGAAGCGGG-CTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtagcatgatcttatcttcatagtgcttatgcacatcaaactgttc Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG attttttccgttgcatctggttataattttctgtctcccccccacctcaggTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCACGGGAAGCGGGCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtagcatgatcttatcttcatagtgcttatgcacatcaaactgttc Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG attttttccgttgcatctggttataattttctgtctcccccccacctcagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCACGGGAAGCGGGCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtagcatgatcttatcttcatagtgcttatgcacatcaaactgttc Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG attttttccgttgcatctggttataattttctgtctcccccccacctcagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCACGGGAAGCGGG-CTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtagcatgatcttatcttcatagtgcttatgcacatcaaactgttc Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG attttttccgttgcatctggttataattttctgtctcccccccacctcagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCACGGGAAGCGGG-CTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtagcatgatcttatcttcatagtgcttatgcacatcaaactgttc Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG attttttccgttgcatctggttataattttctgtctcccccccacctcagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCACGGGAAGCGGGCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtagcatgatcttatcttcatagtgcttatgcacatcaaactgttc Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG attttttccgttgcatctggttataattttctgtctcccccccacctcagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCACGGGAAGCGGGCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtagcatgatcttatcttcatagtgcttatgcacatcaaactgttc Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG attttttccgttgcatctggttataattttctgtctcccccccacctcagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCACGGGAAGCGGGCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtagcatgatcttatcttcatagtgcttatgcacatcaaactgttc #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTT-GTTTTGTTAATTCCACTTg tagttgaaaagtcctagccatctgtcctcaatgcctttttctacctgcaggtCCCAGAAATTGCCTGTGGTTGTTGACCATCCTTCGTTT-GCTGATTCCACTTggtaagaaggaatgttcggagattattacagtagtgtgaggaagtaagccc Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg tagttgaaaagtcctagccatctgtcctcaatgcctttttctacctgcaggtCCCAGAAATTGCCTGTGGTTGTTGACCATCCTTCGTTTGCTGATTCCACTTggtaagaaggaatgttcggagattattacagtagtgtgaggaagtaagccc Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagttgaaaagtcctagccatctgtcctcaatgcctttttctacctgcagGTCCCAGAAATTGCCTGTGGTTGTTGACCATCCTTCGTTTGCTGATTCCACTTGgtaagaaggaatgttcggagattattacagtagtgtgaggaagtaagccc Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagttgaaaagtcctagccatctgtcctcaatgcctttttctacctgcagGTCCCAGAAATTGCCTGTGGTTGTTGACCATCCTTCGTTTGCTGATTCCACTTGgtaagaaggaatgttcggagattattacagtagtgtgaggaagtaagccc Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagttgaaaagtcctagccatctgtcctcaatgcctttttctacctgcagGTCCCAGAAATTGCCTGTGGTTGTTGACCATCCTTCGTTTGCTGATTCCACTTGgtaagaaggaatgttcggagattattacagtagtgtgaggaagtaagccc Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagttgaaaagtcctagccatctgtcctcaatgcctttttctacctgcagGTCCCAGAAATTGCCTGTGGTTGTTGACCATCCTTCGTTTGCTGATTCCACTTGgtaagaaggaatgttcggagattattacagtagtgtgaggaagtaagccc Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagttgaaaagtcctagccatctgtcctcaatgcctttttctacctgcagGTCCCAGAAATTGCCTGTGGTTGTTGACCATCCTTCGTTTGCTGATTCCACTTGgtaagaaggaatgttcggagattattacagtagtgtgaggaagtaagccc Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagttgaaaagtcctagccatctgtcctcaatgcctttttctacctgcagGTCCCAGAAATTGCCTGTGGTTGTTGACCATCCTTCGTTTGCTGATTCCACTTGgtaagaaggaatgttcggagattattacagtagtgtgaggaagtaagccc #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTG-GAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg ttcacttactgactacataggaccagatactggctgtgtgtgccctttagGATCATGTTGCATCACTTCGAAGGCA-GGCTCCTGAGGATCAGGCTGTACTCTTGGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAAAAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTggtatgtgataccctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg ttcacttactgactacataggaccagatactggctgtgtgtgccctttagGATCATGTTGCATCACTTCGAAGGCAGGCTCCTGAGGATCAGGCTGTACTCTTGGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAAAAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTggtatgtgataccctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactgactacataggaccagatactggctgtgtgtgccctttagGATCATGTTGCATCACTTCGAAGGCAGGCTCCTGAGGATCAGGCTGTACTCTTGGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAAAAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtatgtgataccctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTG-GAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactgactacataggaccagatactggctgtgtgtgccctttagGATCATGTTGCATCACTTCGAAGGCA-GGCTCCTGAGGATCAGGCTGTACTCTTGGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAAAAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtatgtgataccctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Pairagon GATCATGTGGCCTC-CCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactgactacataggaccagatactggctgtgtgtgccctttagGATCATGTTGCATCACTTCGAAGGCA-GGCTCCTGAGGATCAGGCTGTACTCTTGGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAAAAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtatgtgataccctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactgactacataggaccagatactggctgtgtgtgccctttagGATCATGTTGCATCACTTCGAAGGCAGGCTCCTGAGGATCAGGCTGTACTCTTGGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAAAAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtatgtgataccctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactgactacataggaccagatactggctgtgtgtgccctttagGATCATGTTGCATCACTTCGAAGGCAGGCTCCTGAGGATCAGGCTGTACTCTTGGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAAAAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtatgtgataccctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactgactacataggaccagatactggctgtgtgtgccctttagGATCATGTTGCATCACTTCGAAGGCAGGCTCCTGAGGATCAGGCTGTACTCTTGGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAAAAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtatgtgataccctgtgagctatcacaaggtaactgccagtgcatgtata #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATC-GTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagaGATTATGCATCTATTCGTTTTCT-TGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAggtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagaGATTATGCATCTATTCGTTTTCTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAggtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTCGTTTTCTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTCGTTTTCTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTCGTTTTCTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTCGTTTTCTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTCGTTTTCTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTCGTTTTCTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGACTTAGAT-AAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag cacatgaatagccaagatggttgtgcatacatttctcttgctgcttccagacCCCCAGGTGGACTACATGGATGTTGACCTAGACCAAAGAATTCC-CCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGATCTGGACAAGaggtatgagcaggacccttggtagcagaacttactatactcagtctacagaa Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag cacatgaatagccaagatggttgtgcatacatttctcttgctgcttccagacCCCCAGGTGGACTACATGGATGTTGACCTAGACCAAAGAATTCCCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGATCTGGACAAGaggtatgagcaggacccttggtagcagaacttactatactcagtctacagaa Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG cacatgaatagccaagatggttgtgcatacatttctcttgctgcttccagACCCCCAGGTGGACTACATGGATGTTGACCTAGACCAAAGAATTCCCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGATCTGGACAAGAGgtatgagcaggacccttggtagcagaacttactatactcagtctacagaa Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG cacatgaatagccaagatggttgtgcatacatttctcttgctgcttccagACCCCCAGGTGGACTACATGGATGTTGACCTAGACCAAAGAATTCCCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGATCTGGACAAGAGgtatgagcaggacccttggtagcagaacttactatactcagtctacagaa Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG cacatgaatagccaagatggttgtgcatacatttctcttgctgcttccagACCCCCAGGTGGACTACATGGATGTTGACCTAGACCAAAGAATTCCCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGATCTGGACAAGAGgtatgagcaggacccttggtagcagaacttactatactcagtctacagaa Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG cacatgaatagccaagatggttgtgcatacatttctcttgctgcttccagACCCCCAGGTGGACTACATGGATGTTGACCTAGACCAAAGAATTCCCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGATCTGGACAAGAGgtatgagcaggacccttggtagcagaacttactatactcagtctacagaa Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG cacatgaatagccaagatggttgtgcatacatttctcttgctgcttccagACCCCCAGGTGGACTACATGGATGTTGACCTAGACCAAAGAATTCCCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGATCTGGACAAGAGgtatgagcaggacccttggtagcagaacttactatactcagtctacagaa Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG cacatgaatagccaagatggttgtgcatacatttctcttgctgcttccagACCCCCAGGTGGACTACATGGATGTTGACCTAGACCAAAGAATTCCCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCTCCTAGATCTGGACAAGAGgtatgagcaggacccttggtagcagaacttactatactcagtctacagaa #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTGAAC-GTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cacatacaaaatctggaggaaatatgagcacctcacccatgtgatctcagAATCTTTCTAGAGGCCTGGTGAACCGTGGCTG-CAAG------TGCAACAAAGATGTTAGAGTCTTATTTGTTGAGCTTTTGGAGAGGgtgagtagcagttagaatttgttgtactaactttttggtgacagctcagc Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cacatacaaaatctggaggaaatatgagcacctcacccatgtgatctcagAATCTTTCTAGAGGCCTGGTGAACCGTGGCTGCAAG------TGCAACAAAGATGTTAGAGTCTTATTTGTTGAGCTTTTGGAGAGGgtgagtagcagttagaatttgttgtactaactttttggtgaacctgtttc Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cacatacaaaatctggaggaaatatgagcacctcacccatgtgatctcagAATCTTTCTAGAGGCCTGGTGAACCGTGGCTGCAAG------TGCAACAAAGATGTTAGAGTCTTATTTGTTGAGCTTTTGGAGAGGgtgagtagcagttagaatttgttgtactaactttttggtgacagctcagc Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTGAAC-GTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cacatacaaaatctggaggaaatatgagcacctcacccatgtgatctcagAATCTTTCTAGAGGCCTGGTGAACCGTGGCTG-CAAG-TG-----CAACAAAGATGTTAGAGTCTTATTTGTTGAGCTTTTGGAGAGGgtgagtagcagttagaatttgttgtactaactttttggtgacagctcagc Alignment from Pairagon AATCTGTCTCGGGGGCTGGTGAA-CGTGGCTGCCAAGCTGACCCACAATAAG---------GATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cacatacaaaatctggaggaaatatgagcacctcacccatgtgatctcagAATCTTTCTAGAGGCCTGGTGAACCGTGGCTGC----------------AAGTGCAACAAAGATGTTAGAGTCTTATTTGTTGAGCTTTTGGAGAGGgtgagtagcagttagaatttgttgtactaactttttggtgacagctcagc Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cacatacaaaatctggaggaaatatgagcacctcacccatgtgatctcagAATCTTTCTAGAGGCCTGGTGAACCGTGGCTGCAAGTGC------AACAAAGATGTTAGAGTCTTATTTGTTGAGCTTTTGGAGAGGgtgagtagcagttagaatttgttgtactaactttttggtgacagctcagc Alignment from Exonerate_coding2genome cacatacaaaatctggaggaaatatgagcacctcacccatgtgatctcagaatctttctagaggcctggtgaaccgtggctgcaagtgcaacaaagatgttagagtcttatttgttgagcttttggagagggtgagtagcagttagaatttgttgtactaactttttggtgacagctcagc Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cacatacaaaatctggaggaaatatgagcacctcacccatgtgatctcagAATCTTTCTAGAGGCCTGGTGAACCGTGGCTGCAAGTGC------AACAAAGATGTTAGAGTCTTATTTGTTGAGCTTTTGGAGAGGgtgagtagcagttagaatttgttgtactaactttttggtgacagctcagc #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg acaatctttcctcatcattgatggtttgatgtgttctttttggtccctagGGAAAGCTGGGAGATGGGACACGAGTTTG-CAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAgggtatgcttggcatataatctaagttgcagttgctatagtaaaggtatttt Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg acaatctttcctcatcattgatggtttgatgtgttctttttggtccctagGGAAAGCTGGGAGATGGGACACGAGTTTGCAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAgggtatgcttggcatataatctaagttgcagttgctatagtaaaggtatttt Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcatcattgatggtttgatgtgttctttttggtccctagGGAAAGCTGGGAGATGGGACACGAGTTTGCAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtatgcttggcatataatctaagttgcagttgctatagtaaaggtatttt Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcatcattgatggtttgatgtgttctttttggtccctagGGAAAGCTGGGAGATGGGACACGAGTTTGCAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtatgcttggcatataatctaagttgcagttgctatagtaaaggtatttt Alignment from Pairagon GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcatcattgatggtttgatgtgttctttttggtccctagGGAAAGCTGGGAGATGGGACACGAGTTTG-CAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtatgcttggcatataatctaagttgcagttgctatagtaaaggtatttt Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcatcattgatggtttgatgtgttctttttggtccctagGGAAAGCTGGGAGATGGGACACGAGTTTGCAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtatgcttggcatataatctaagttgcagttgctatagtaaaggtatttt Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGGATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCA acaatctttcctcatcattgatggtttgatgtgttctttttggtccctagGGAAAGCTGGGAGATGGGACACGAGTTTGCAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGGTATGCTTGGCATATAATCTAAGTTGCAGTTGCTATAgtaaaggtatttt Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcatcattgatggtttgatgtgttctttttggtccctagGGAAAGCTGGGAGATGGGACACGAGTTTGCAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtatgcttggcatataatctaagttgcagttgctatagtaaaggtatttt #### Frmd8_ID1284_4 --> 2 - 0 Original Alignment atGAGCCTTCCCTTCAGTTCCGAAGG-AATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaacaatgaagggcttctgtccctccctgcagatGAACCTTCCCTTCACTTCCGAAGGCAATGTCT-TTTCCCCAGACAGCGTGAGCTCCAGgtgaggcaggacttatctaaggtcacactattttagtatgtccatatttg Alignment from CESAR atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaacaatgaagggcttctgtccctccctgcagatGAACCTTCCCTTCACTTCCGAAGGCAATGTCTTTTCCCCAGACAGCGTGAGCTCCAGgtgaggcaggacttatctaaggtcacactattttagtatgtccatatttg Alignment from Spaln_aa2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaacaatgaagggcttctgtccctccctgcagATGAACCTTCCCTTCACTTCCGAAGGCAATGTCTTTTCCCCAGACAGCGTGAGCTCCAGgtgaggcaggacttatctaaggtcacactattttagtatgtccatatttg Alignment from Spaln_nt2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaacaatgaagggcttctgtccctccctgcagATGAACCTTCCCTTCACTTCCGAAGGCAATGTCTTTTCCCCAGACAGCGTGAGCTCCAGgtgaggcaggacttatctaaggtcacactattttagtatgtccatatttg Alignment from Pairagon ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaacaatgaagggcttctgtccctccctgcagATGAACCTTCCCTTCACTTCCGAAGGCAATGTCTTTTCCCCAGACAGCGTGAGCTCCAGgtgaggcaggacttatctaaggtcacactattttagtatgtccatatttg Alignment from Exonerate_protein2genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaacaatgaagggcttctgtccctccctgcagATGAACCTTCCCTTCACTTCCGAAGGCAATGTCTTTTCCCCAGACAGCGTGAGCTCCAGgtgaggcaggacttatctaaggtcacactattttagtatgtccatatttg Alignment from Exonerate_coding2genome GATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaacaatgaagggcttctgtccctccctgcaGATGAACCTTCCCTTCACTTCCGAAGGCAATGTCTTTTCCCCAGACAGCGTGAGCTCCAGgtgaggcaggacttatctaaggtcacactattttagtatgtccatatttg Alignment from GeneWise ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaacaatgaagggcttctgtccctccctgcagATGAACCTTCCCTTCACTTCCGAAGGCAATGTCTTTTCCCCAGACAGCGTGAGCTCCAGgtgaggcaggacttatctaaggtcacactattttagtatgtccatatttg #### Ganab_ID2468_7 --> 1 - 0 Original Alignment gCAAGAATCAAAAGACCCAGCTGAAGGCAAT-GGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG cagtgaacatcctaacttcactataggttaaataaataatttcttcttaggCAAGAATCAAAAGACCCTGCGGAGGGCAATCGGGGCCC-GCCCGAGGCGACACCTGGGGATGGCGACAAGgtgggttgaatgtgagatttttacctctttaggaggcggcaagttggtat Alignment from CESAR gCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG cagtgaacatcctaacttcactataggttaaataaataatttcttcttaggCAAGAATCAAAAGACCCTGCGGAGGGCAATCGGGGCCCGCCCGAGGCGACACCTGGGGATGGCGACAAGgtgggttgaatgtgagatttttacctctttaggaggcggcaagttggtat Alignment from Spaln_aa2Genome GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG cagtgaacatcctaacttcactataggttaaataaataatttcttcttagGCAAGAATCAAAAGACCCTGCGGAGGGCAATCGGGGCCCGCCCGAGGCGACACCTGGGGATGGCGACAAGgtgggttgaatgtgagatttttacctctttaggaggcggcaagttggtat Alignment from Spaln_nt2Genome GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG cagtgaacatcctaacttcactataggttaaataaataatttcttcttagGCAAGAATCAAAAGACCCTGCGGAGGGCAATCGGGGCCCGCCCGAGGCGACACCTGGGGATGGCGACAAGgtgggttgaatgtgagatttttacctctttaggaggcggcaagttggtat Alignment from Pairagon GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG cagtgaacatcctaacttcactataggttaaataaataatttcttcttagGCAAGAATCAAAAGACCCTGCGGAGGGCAATCGGGGCCCGCCCGAGGCGACACCTGGGGATGGCGACAAGgtgggttgaatgtgagatttttacctctttaggaggcggcaagttggtat Alignment from Exonerate_protein2genome GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG cagtgaacatcctaacttcactataggttaaataaataatttcttcttagGCAAGAATCAAAAGACCCTGCGGAGGGCAATCGGGGCCCGCCCGAGGCGACACCTGGGGATGGCGACAAGgtgggttgaatgtgagatttttacctctttaggaggcggcaagttggtat Alignment from Exonerate_coding2genome GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG cagtgaacatcctaacttcactataggttaaataaataatttcttcttagGCAAGAATCAAAAGACCCTGCGGAGGGCAATCGGGGCCCGCCCGAGGCGACACCTGGGGATGGCGACAAGgtgggttgaatgtgagatttttacctctttaggaggcggcaagttggtat Alignment from GeneWise GCAAGAATCAAAAGACCCAGCTGAAGGCAATGGAGCCCAGCCTGAAGCAACACCTGGGGATGGTGACAAG cagtgaacatcctaacttcactataggttaaataaataatttcttcttagGCAAGAATCAAAAGACCCTGCGGAGGGCAATCGGGGCCCGCCCGAGGCGACACCTGGGGATGGCGACAAGgtgggttgaatgtgagatttttacctctttaggaggcggcaagttggtat #### Ganab_ID2471_10 --> 1 - 0 Original Alignment gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACAC-AGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttttttcggataagaaatctttatgttacctttctgcctgtcttccagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTACGAGCTAAATAACCCAACAGCTCTCTATGGGTCTGTACCTGTT---CTGGCACACCAGCTTCCATC-AGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCTAACACA------AAGgtatggcgtgggtatgtgagacttgagatctgccttagacatctcatcat Alignment from CESAR gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttttttcggataagaaatctttatgttacctttctgcctgtcttccagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTACGAGCTAAATAACCCAACAGCTCTCTATGGGTCTGTACCTGTT---CTGGCACACCAGCTTCCATCAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCTAACACA------AAGgtatggcgtgggtatgtgagacttgagatctgccttagacatctcatcat Alignment from Spaln_aa2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttttttcggataagaaatctttatgttacctttctgcctgtcttccagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTACGAGCTAAATAACCCAACAGCTCTCTATGGGTCTGTACCTGTT---CTGGCACACCAGCTTCCATCAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCTAACACA------AAGgtatggcgtgggtatgtgagacttgagatctgccttagacatctcatcat Alignment from Spaln_nt2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACAC-AGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttttttcggataagaaatctttatgttacctttctgcctgtcttccagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTACGAGCTAAATAACCCAACAGCTCTCTATGGGTCTGTACCTG---TTCTGGCACACCAGCTTCCATC-AGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCTAACAC------AAAGgtatggcgtgggtatgtgagacttgagatctgccttagacatctcatcat Alignment from Pairagon GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACA-CAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACAC---------GGCTGG--------------------------------------- atttttttcggataagaaatctttatgttacctttctgcctgtcttccagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTACGAGCTAAATAACCCAACAGCTCTCTATGGGTCTGTACCTG---TTCTGGCACACCAGCTTCCATC-AGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCTAACACAAAGGTATGGCGTGGGTATGTGAGACTTGAGATCTGCCTTAGACATCTCATCAT Alignment from Exonerate_protein2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCT atttttttcggataagaaatctttatgttacctttctgcctgtcttccagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTACGAGCTAAATAACCCAACAGCTCTCTATGGGTCTGTACCTGTT---CTGGCACACCAGCTTCCATCAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCTAACACAAAGgtatggcgtgggtatgtgagacttgagatctgccttagacatctcatcat Alignment from Exonerate_coding2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCT atttttttcggataagaaatctttatgttacctttctgcctgtcttccagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTACGAGCTAAATAACCCAACAGCTCTCTATGGGTCTGTACCTGTT---CTGGCACACCAGCTTCCATCAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCTAACACAAAGgtatggcgtgggtatgtgagacttgagatctgccttagacatctcatcat Alignment from GeneWise GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGG----------------------------------------------- atttttttcggataagaaatctttatgttacctttctgcctgtcttccagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTACGAGCTAAATAACCCAACAGCTCTCTATGGGTCTGTACCTGTTCTG---GCACACCAGCTTCCATCAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCTAACACAAAGGTATGGCGTGGGTATGTGAGACTTGAGATCTGCCTTAGACATCTCATCAT #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTC-AATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG acaaagcatttatactcttaccagaccaccgtctaccttctgccctgcaggcTCCCAGACATTGCCCCCCCCCTCATCCCTTGGCTACCATCAAAGTCGCTGGAACTACCGTGATGAAGCAGATACCTTAGAGGTAGGCCAGGGTTTTGACGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGATCCCACCCAATTCCCCCAGCCACTTCAATATGC-TGATCACTTGACTTCAAAGCGACGGAAGgtaactggtgttacagctatccatattttttgtccagggttgggaaatgg Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG acaaagcatttatactcttaccagaccaccgtctaccttctgccctgcaggcTCCCAGACATTGCCCCCCCCCTCATCCCTTGGCTACCATCAAAGTCGCTGGAACTACCGTGATGAAGCAGATACCTTAGAGGTAGGCCAGGGTTTTGACGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGATCCCACCCAATTCCCCCAGCCACTTCAATATGCTGATCACTTGACTTCAAAGCGACGGAAGgtaactggtgttacagctatccatattttttgtccagggttgggaaatgg Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG acaaagcatttatactcttaccagaccaccgtctaccttctgccctgcagGCTCCCAGACATTGCCCCCCCCCTCATCCCTTGGCTACCATCAAAGTCGCTGGAACTACCGTGATGAAGCAGATACCTTAGAGGTAGGCCAGGGTTTTGACGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGATCCCACCCAATTCCCCCAGCCACTTCAATATGCTGATCACTTGACTTCAAAGCGACGGAAGgtaactggtgttacagctatccatattttttgtccagggttgggaaatgg Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCT-CAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG acaaagcatttatactcttaccagaccaccgtctaccttctgccctgcagGCTCCCAGACATTGCCCCCCCCCTCATCCCTTGGCTACCATCAAAGTCGCTGGAACTACCGTGATGAAGCAGATACCTTAGAGGTAGGCCAGGGTTTTGACGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGATCCCACCCAATTCCCCCAGCCACTTCAATATGC-TGATCACTTGACTTCAAAGCGACGGAAGgtaactggtgttacagctatccatattttttgtccagggttgggaaatgg Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCC-CCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG acaaagcatttatactcttaccagaccaccgtctaccttctgccctgcagGCTCCCAGACATTGCCCCCCCCCTCATCCCTTGGCTACCATCAAAGTCGCTGGAACTACCGTGATGAAGCAGATACCTTAGAGGTAGGCCAGGGTTTTGACGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGATCCCACCCAATTCCCCCAGCCACTTCAATATGC-TGATCACTTGACTTCAAAGCGACGGAAGgtaactggtgttacagctatccatattttttgtccagggttgggaaatgg Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG acaaagcatttatactcttaccagaccaccgtctaccttctgccctgcagGCTCCCAGACATTGCCCCCCCCCTCATCCCTTGGCTACCATCAAAGTCGCTGGAACTACCGTGATGAAGCAGATACCTTAGAGGTAGGCCAGGGTTTTGACGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGATCCCACCCAATTCCCCCAGCCACTTCAATATGCTGATCACTTGACTTCAAAGCGACGGAAGgtaactggtgttacagctatccatattttttgtccagggttgggaaatgg Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG acaaagcatttatactcttaccagaccaccgtctaccttctgccctgcagGCTCCCAGACATTGCCCCCCCCCTCATCCCTTGGCTACCATCAAAGTCGCTGGAACTACCGTGATGAAGCAGATACCTTAGAGGTAGGCCAGGGTTTTGACGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGATCCCACCCAATTCCCCCAGCCACTTCAATATGCTGATCACTTGACTTCAAAGCGACGGAAGgtaactggtgttacagctatccatattttttgtccagggttgggaaatgg Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG acaaagcatttatactcttaccagaccaccgtctaccttctgccctgcagGCTCCCAGACATTGCCCCCCCCCTCATCCCTTGGCTACCATCAAAGTCGCTGGAACTACCGTGATGAAGCAGATACCTTAGAGGTAGGCCAGGGTTTTGACGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGATCCCACCCAATTCCCCCAGCCACTTCAATATGCTGATCACTTGACTTCAAAGCGACGGAAGgtaactggtgttacagctatccatattttttgtccagggttgggaaatgg #### Ganab_ID2475_14 --> 2 - 0 Original Alignment Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG AggtgaggtccatgaccaatgaagttttttcttaccttgttaatcattaggcTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGCTCTA-CATGTTCAGCTTTGACAATTATGAGgtgggtaattgggccagttggtaatccacataattttgattattagtcat Alignment from CESAR Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AggtaagttccatgaccaatgaagttttttcttaccttgttaatcattaggcTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGCTCTACATGTTCAGCTTTGACAATTATGAGgtgggtaattgggccagttggtaatccacataattttgattattagtcat Alignment from Spaln_aa2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgaggtccatgaccaatgaagttttttcttaccttgttaatcattagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGCTCTACATGTTCAGCTTTGACAATTATGAGgtgggtaattgggccagttggtaatccacataattttgattattagtcat Alignment from Spaln_nt2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgaggtccatgaccaatgaagttttttcttaccttgttaatcattagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGCTCTACATGTTCAGCTTTGACAATTATGAGgtgggtaattgggccagttggtaatccacataattttgattattagtcat Alignment from Pairagon AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgaggtccatgaccaatgaagttttttcttaccttgttaatcattagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGCTCTACATGTTCAGCTTTGACAATTATGAGgtgggtaattgggccagttggtaatccacataattttgattattagtcat Alignment from Exonerate_protein2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgaggtccatgaccaatgaagttttttcttaccttgttaatcattagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGCTCTACATGTTCAGCTTTGACAATTATGAGgtgggtaattgggccagttggtaatccacataattttgattattagtcat Alignment from Exonerate_coding2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgaggtccatgaccaatgaagttttttcttaccttgttaatcattagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGCTCTACATGTTCAGCTTTGACAATTATGAGgtgggtaattgggccagttggtaatccacataattttgattattagtcat Alignment from GeneWise AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgaggtccatgaccaatgaagttttttcttaccttgttaatcattagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGCTCTACATGTTCAGCTTTGACAATTATGAGgtgggtaattgggccagttggtaatccacataattttgattattagtcat #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAG-CACCGGGACATCCATAACATCTATGGCTTATATGTG gttactgtaatctttttttccttctccaatctattatcttttaattacagGGTTCTGCCCCCAATCTGTATGTATGGATAGAAATGAATGAACCTTCTGTCTTCAATGGTCCTGAGGTCACCATGTTAAAGGATGCAGTGCACTATGGAGGCTGGGAGCCACCGGGATA-CCACAATTTTTATGGATTATATGTGgtgagctgagtaaatcacaaggcagtcaagcaaagaggacaaaaaagttg Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG gttactgtaatctttttttccttctccaatctattatcttttaattacagGGTTCTGCCCCCAATCTGTATGTATGGATAGAAATGAATGAACCTTCTGTCTTCAATGGTCCTGAGGTCACCATGTTAAAGGATGCAGTGCACTATGGAGGCTGGGAGCCACCGGGATACCACAATTTTTATGGATTATATGTGgtgagctgagtaaatcacaaggcagtcaagcaaagaggacaaaaaagttg Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG gttactgtaatctttttttccttctccaatctattatcttttaattacagGGTTCTGCCCCCAATCTGTATGTATGGATAGAAATGAATGAACCTTCTGTCTTCAATGGTCCTGAGGTCACCATGTTAAAGGATGCAGTGCACTATGGAGGCTGGGAGCCACCGGGATACCACAATTTTTATGGATTATATGTGgtgagctgagtaaatcacaaggcagtcaagcaaagaggacaaaaaagttg Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGC-ACCGGGACATCCATAACATCTATGGCTTATATGTG gttactgtaatctttttttccttctccaatctattatcttttaattacagGGTTCTGCCCCCAATCTGTATGTATGGATAGAAATGAATGAACCTTCTGTCTTCAATGGTCCTGAGGTCACCATGTTAAAGGATGCAGTGCACTATGGAGGCTGGGAGCCACCGGGATA-CCACAATTTTTATGGATTATATGTGgtgagctgagtaaatcacaaggcagtcaagcaaagaggacaaaaaagttg Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAG-CACCGGGACATCCATAACATCTATGGCTTATATGTG gttactgtaatctttttttccttctccaatctattatcttttaattacagGGTTCTGCCCCCAATCTGTATGTATGGATAGAAATGAATGAACCTTCTGTCTTCAATGGTCCTGAGGTCACCATGTTAAAGGATGCAGTGCACTATGGAGGCTGGGAGCCACCGGGATA-CCACAATTTTTATGGATTATATGTGgtgagctgagtaaatcacaaggcagtcaagcaaagaggacaaaaaagttg Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG gttactgtaatctttttttccttctccaatctattatcttttaattacagGGTTCTGCCCCCAATCTGTATGTATGGATAGAAATGAATGAACCTTCTGTCTTCAATGGTCCTGAGGTCACCATGTTAAAGGATGCAGTGCACTATGGAGGCTGGGAGCCACCGGGATACCACAATTTTTATGGATTATATGTGgtgagctgagtaaatcacaaggcagtcaagcaaagaggacaaaaaagttg Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG gttactgtaatctttttttccttctccaatctattatcttttaattacagGGTTCTGCCCCCAATCTGTATGTATGGATAGAAATGAATGAACCTTCTGTCTTCAATGGTCCTGAGGTCACCATGTTAAAGGATGCAGTGCACTATGGAGGCTGGGAGCCACCGGGATACCACAATTTTTATGGATTATATGTGgtgagctgagtaaatcacaaggcagtcaagcaaagaggacaaaaaagttg Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG gttactgtaatctttttttccttctccaatctattatcttttaattacagGGTTCTGCCCCCAATCTGTATGTATGGATAGAAATGAATGAACCTTCTGTCTTCAATGGTCCTGAGGTCACCATGTTAAAGGATGCAGTGCACTATGGAGGCTGGGAGCCACCGGGATACCACAATTTTTATGGATTATATGTGgtgagctgagtaaatcacaaggcagtcaagcaaagaggacaaaaaagttg #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGG-GCTTTCTTCTCAGGCTCCCAGCGCTTTg accaggaagtgtgttttagattttctttcttcctctgctcccctggccagCATATGGCAACCACTGATGGCCTGATACAGTGTTCAGGAGGGGTTGAGCGTTCATTTGTGTTGAGTAGGCTCCTTTTCCT-AGGGTTCCAGCGCTTTggtatttttaaactagtgtcaaaactctagtcacttatggttaacctgtca Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accaggaagtgtgttttagattttctttcttcctctgctcccctggccagCATATGGCAACCACTGATGGCCTGATACAGTGTTCAGGAGGGGTTGAGCGTTCATTTGTGTTGAGTAGGCTCCTTTTCCTAGGGTTCCAGCGCTTTggtatttttaaactagtgtcaaaactctagtcacttatggttaacctgtca Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtgtgttttagattttctttcttcctctgctcccctggccagCATATGGCAACCACTGATGGCCTGATACAGTGTTCAGGAGGGGTTGAGCGTTCATTTGTGTTGAGTAGGCTCCTTTTCCTAGGGTTCCAGCGCTTTGgtatttttaaactagtgtcaaaactctagtcacttatggttaacctgtca Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtgtgttttagattttctttcttcctctgctcccctggccagCATATGGCAACCACTGATGGCCTGATACAGTGTTCAGGAGGGGTTGAGCGTTCATTTGTGTTGAGTAGGCTCCTTTTCCTAGGGTTCCAGCGCTTTGgtatttttaaactagtgtcaaaactctagtcacttatggttaacctgtca Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtgtgttttagattttctttcttcctctgctcccctggccagCATATGGCAACCACTGATGGCCTGATACAGTGTTCAGGAGGGGTTGAGCGTTCATTTGTGTTGAGTAGGCTCCTTTTCCTAGGGTTCCAGCGCTTTGgtatttttaaactagtgtcaaaactctagtcacttatggttaacctgtca Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtgtgttttagattttctttcttcctctgctcccctggccagCATATGGCAACCACTGATGGCCTGATACAGTGTTCAGGAGGGGTTGAGCGTTCATTTGTGTTGAGTAGGCTCCTTTTCCTAGGGTTCCAGCGCTTTGgtatttttaaactagtgtcaaaactctagtcacttatggttaacctgtca Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtgtgttttagattttctttcttcctctgctcccctggccagCATATGGCAACCACTGATGGCCTGATACAGTGTTCAGGAGGGGTTGAGCGTTCATTTGTGTTGAGTAGGCTCCTTTTCCTAGGGTTCCAGCGCTTTGgtatttttaaactagtgtcaaaactctagtcacttatggttaacctgtca Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtgtgttttagattttctttcttcctctgctcccctggccagCATATGGCAACCACTGATGGCCTGATACAGTGTTCAGGAGGGGTTGAGCGTTCATTTGTGTTGAGTAGGCTCCTTTTCCTAGGGTTCCAGCGCTTTGgtatttttaaactagtgtcaaaactctagtcacttatggttaacctgtca #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTG-AAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg cagtgtctactattttgtgggtgcagtcaatatgtgtctaattttctcaggaGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGCAAGATCT-TATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTTTCATTCTGTGGAggtgagtgcagttatcatctgggctcttgcattgggtgggtgtgttggtac Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg cagtgtctactattttgtgggtgcagtcaatatgtgtctaattttctcaggaGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGCAAGATCTTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTTTCATTCTGTGGAggtgagtgcagttatcatctgggctcttgcattgggtgggtgtgttggtac Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgtctactattttgtgggtgcagtcaatatgtgtctaattttctcagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGCAAGATCTTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTTTCATTCTGTGGAGgtgagtgcagttatcatctgggctcttgcattgggtgggtgtgttggtac Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgtctactattttgtgggtgcagtcaatatgtgtctaattttctcagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGCAAGATCTTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTTTCATTCTGTGGAGgtgagtgcagttatcatctgggctcttgcattgggtgggtgtgttggtac Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTG-AAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgtctactattttgtgggtgcagtcaatatgtgtctaattttctcagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGCAAGATCT-TATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTTTCATTCTGTGGAGgtgagtgcagttatcatctgggctcttgcattgggtgggtgtgttggtac Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgtctactattttgtgggtgcagtcaatatgtgtctaattttctcagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGCAAGATCTTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTTTCATTCTGTGGAGgtgagtgcagttatcatctgggctcttgcattgggtgggtgtgttggtac Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgtctactattttgtgggtgcagtcaatatgtgtctaattttctcagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGCAAGATCTTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTTTCATTCTGTGGAGgtgagtgcagttatcatctgggctcttgcattgggtgggtgtgttggtac Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgtctactattttgtgggtgcagtcaatatgtgtctaattttctcagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGGATCATTTGCAAGATCTTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTTTCATTCTGTGGAGgtgagtgcagttatcatctgggctcttgcattgggtgggtgtgttggtac #### Ganab_ID2484_23 --> 0 - 2 Original Alignment GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCT-GGCAGCACACTGGTCTCTag ataggtggacagaccacactgtctgttagactcagaacctctgttcacagGGTACTGCGCAGGGAGAGCTTTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTCGGTA-CACACTGGTATCTaggtaagtcttatgccctgcctccagtttctgctacctgtgtgctgagcctg Alignment from CESAR GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag ataggtggacagaccacactgtctgttagactcagaacctctgttcacagGGTACTGCGCAGGGAGAGCTTTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTCGGTACACACTGGTATCTaggtaagtcttatgccctgcctccagtttctgctacctgtgattgagtcttt Alignment from Spaln_aa2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ataggtggacagaccacactgtctgttagactcagaacctctgttcacagGGTACTGCGCAGGGAGAGCTTTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTCGGTACACACTGGTATCTAGgtaagtcttatgccctgcctccagtttctgctacctgtgtgctgagcctg Alignment from Spaln_nt2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ataggtggacagaccacactgtctgttagactcagaacctctgttcacagGGTACTGCGCAGGGAGAGCTTTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTCGGTACACACTGGTATCTAGgtaagtcttatgccctgcctccagtttctgctacctgtgtgctgagcctg Alignment from Pairagon GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ataggtggacagaccacactgtctgttagactcagaacctctgttcacagGGTACTGCGCAGGGAGAGCTTTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTCGGTACACACTGGTATCTAGgtaagtcttatgccctgcctccagtttctgctacctgtgtgctgagcctg Alignment from Exonerate_protein2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ataggtggacagaccacactgtctgttagactcagaacctctgttcacagGGTACTGCGCAGGGAGAGCTTTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTCGGTACACACTGGTATCTAGgtaagtcttatgccctgcctccagtttctgctacctgtgtgctgagcctg Alignment from Exonerate_coding2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ataggtggacagaccacactgtctgttagactcagaacctctgttcacagGGTACTGCGCAGGGAGAGCTTTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTCGGTACACACTGGTATCTAGgtaagtcttatgccctgcctccagtttctgctacctgtgtgctgagcctg Alignment from GeneWise GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ataggtggacagaccacactgtctgttagactcagaacctctgttcacagGGTACTGCGCAGGGAGAGCTTTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTCGGTACACACTGGTATCTAGgtaagtcttatgccctgcctccagtttctgctacctgtgtgctgagcctg #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTC-AACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCCAATGCCC-TAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCCAATGCCCTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCCAATGCCCTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCCAATGCCCTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCCAATGCCCTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCCAATGCCCTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCCAATGCCCTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTA-GATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg ccacccagccacaagcattaggagaatgtgacctccgcgtctttctctagctGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGCGATT-TCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGTAAACCAGGGTGCAGAGACCTAGAAGAATCAGGTGATTCTAGCcgtatgtaacacaatacgttcatcccacttgaactaccagtcaatgtttta Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg ccacccagccacaagcattaggagaatgtgacctccgcgtctttctctagctGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGCGATTTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGTAAACCAGGGTGCAGAGACCTAGAAGAATCAGGTGATTCTAGCcgtatgtaacacaatacgttcatcccacttgaactaccagtcaatgtttta Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccagccacaagcattaggagaatgtgacctccgcgtctttctctagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGCGATTTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGTAAACCAGGGTGCAGAGACCTAGAAGAATCAGGTGATTCTAGCCgtatgtaacacaatacgttcatcccacttgaactaccagtcaatgtttta Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccagccacaagcattaggagaatgtgacctccgcgtctttctctagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGCGATTTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGTAAACCAGGGTGCAGAGACCTAGAAGAATCAGGTGATTCTAGCCgtatgtaacacaatacgttcatcccacttgaactaccagtcaatgtttta Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCC---------CGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccagccacaagcattaggagaatgtgacctccgcgtctttctctagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGT---------TGCCTTGCGATTTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGTAAACCAGGGTGCAGAGACCTAGAAGAATCAGGTGATTCTAGCCgtatgtaacacaatacgttcatcccacttgaactaccagtcaatgtttta Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccagccacaagcattaggagaatgtgacctccgcgtctttctctagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGCGATTTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGTAAACCAGGGTGCAGAGACCTAGAAGAATCAGGTGATTCTAGCCgtatgtaacacaatacgttcatcccacttgaactaccagtcaatgtttta Alignment from Exonerate_coding2genome ccacccagccacaagcattaggagaatgtgacctccgcgtctttctctagctgaaggagcaaccattgatgggaaatccacaggggttgccttgcgatttcgcgggctttactttcccactggagggtggttgacagattatggtaaaccagggtgcagagacctagaagaatcaggtgattctagccgtatgtaacacaatacgttcatcccacttgaactaccagtcaatgtttta Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG ccacccagccacaagcattaggagaatgtgacctccgcgtctttctctagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGCGATTTCGCGGGCTTTACTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGTAAACCAGGGTGCAGAGACCTAGAAGAATCAGGTGATTCTAGCCgtatgtaacacaatacgttcatcccacttgaactaccagtcaatgtttta #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCTCGA-TTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtaagcttctgttttctcttgcagcaGACAAAAAGTTCACCAGGAAGCCACCTCGTCTATTCCTGCC-CCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtattggtagtgaacctattcaactatctccaatgctcacctgtctcagc Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtaagcttctgttttctcttgcagcaGACAAAAAGTTCACCAGGAAGCCACCTCGTCTATTCCTGCCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtattggtagtgaacctattcaactatctccaatgctcacctgtctcagc Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtaagcttctgttttctcttgcagCAGACAAAAAGTTCACCAGGAAGCCACCTCGTCTATTCCTGCCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtattggtagtgaacctattcaactatctccaatgctcacctgtctcagc Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtaagcttctgttttctcttgcagCAGACAAAAAGTTCACCAGGAAGCCACCTCGTCTATTCCTGCCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtattggtagtgaacctattcaactatctccaatgctcacctgtctcagc Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtaagcttctgttttctcttgcagCAGACAAAAAGTTCACCAGGAAGCCACCTCGTCTATTCCTGCCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtattggtagtgaacctattcaactatctccaatgctcacctgtctcagc Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtaagcttctgttttctcttgcagCAGACAAAAAGTTCACCAGGAAGCCACCTCGTCTATTCCTGCCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtattggtagtgaacctattcaactatctccaatgctcacctgtctcagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtgttgtaagcttctgttttctcttgcagCAGACAAAAAGTTCACCAGGAAGCCACCTCGTCTATTCCTGCCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtattggtagtgaacctattcaactatctccaatgctcacctgtctcagc #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaacatttcattatgaggtgttacatcccataaatccaaactcatagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGTTCTGCGCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATG-TCAAAAACAGAATACAACCACAACTCTAGAAgtatgtgcagaatagttgtctacctatagtcgggacagcaccactcgaca Alignment from CESAR AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaacatttcattatgaggtgttacatcccataaatccaaactcatagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGTTCTGCGCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTCAAAAACAGAATACAACCACAACTCTAGAAgtatgtgcagaatagttgtctacctatagtcgggacagcaccactcgaca Alignment from Spaln_aa2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaacatttcattatgaggtgttacatcccataaatccaaactcatagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGTTCTGCGCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTCAAAAACAGAATACAACCACAACTCTAGAAgtatgtgcagaatagttgtctacctatagtcgggacagcaccactcgaca Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaacatttcattatgaggtgttacatcccataaatccaaactcatagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGTTCTGCGCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATG-TCAAAAACAGAATACAACCACAACTCTAGAAgtatgtgcagaatagttgtctacctatagtcgggacagcaccactcgaca Alignment from Pairagon AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaacatttcattatgaggtgttacatcccataaatccaaactcatagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGTTCTGCGCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATG-TCAAAAACAGAATACAACCACAACTCTAGAAgtatgtgcagaatagttgtctacctatagtcgggacagcaccactcgaca Alignment from Exonerate_protein2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaacatttcattatgaggtgttacatcccataaatccaaactcatagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGTTCTGCGCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTCAAAAACAGAATACAACCACAACTCTAGAAgtatgtgcagaatagttgtctacctatagtcgggacagcaccactcgaca Alignment from Exonerate_coding2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGGAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGC ggtaaacatttcattatgaggtgttacatcccataaatccaaactcatagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGTTCTGCGCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTCAAAAACAGAATACAACCACAACTCTAGAAGTATGTGCAGAATAGTTGTCTACCTATAGTCGGGACAGCACCACTCGACA Alignment from GeneWise AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaacatttcattatgaggtgttacatcccataaatccaaactcatagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGTTCTGCGCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTCAAAAACAGAATACAACCACAACTCTAGAAgtatgtgcagaatagttgtctacctatagtcgggacagcaccactcgaca #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTC-AGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcttttcttctttgtgtcttccagaAAGTGTGCCACAATCTCTGCCCACTATGGCCTCCAGTG-TGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtgagtaattaccaagtaaactaatcagaggctaatgctgcacatcctcc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcttttcttctttgtgtcttccagaAAGTGTGCCACAATCTCTGCCCACTATGGCCTCCAGTGTGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtgagtaattaccaagtaaactaatcagaggctaatgctgcacatcctcc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcttttcttctttgtgtcttccagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCCAGTGTGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtgagtaattaccaagtaaactaatcagaggctaatgctgcacatcctcc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcttttcttctttgtgtcttccagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCCAGTGTGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtgagtaattaccaagtaaactaatcagaggctaatgctgcacatcctcc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcttttcttctttgtgtcttccagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCCAGTGTGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtgagtaattaccaagtaaactaatcagaggctaatgctgcacatcctcc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcttttcttctttgtgtcttccagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCCAGTGTGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtgagtaattaccaagtaaactaatcagaggctaatgctgcacatcctcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gggcctggaaatgtgcaccaggtgtttcttttcttctttgtgtcttccagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCCAGTGTGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtgagtaattaccaagtaaactaatcagaggctaatgctgcacatcctcc #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTA-AGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatactatcagtactatttaatctttgtggtcttttcagaGGAAAGTCAACAGTTTTGAGCTTTGTACAGCTGGCGGA-TTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGCCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgtcacaaggataaccatgcacagattttatag Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatactatcagtactatttaatctttgtggtcttttcagaGGAAAGTCAACAGTTTTGAGCTTTGTACAGCTGGCGGATTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGCCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgtcacaaggataaccatgcacagattttatag Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatactatcagtactatttaatctttgtggtcttttcagAGGAAAGTCAACAGTTTTGAGCTTTGTACAGCTGGCGGATTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGCCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgtcacaaggataaccatgcacagattttatag Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatactatcagtactatttaatctttgtggtcttttcagAGGAAAGTCAACAGTTTTGAGCTTTGTACAGCTGGCGGATTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGCCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgtcacaaggataaccatgcacagattttatag Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTA-AGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatactatcagtactatttaatctttgtggtcttttcagAGGAAAGTCAACAGTTTTGAGCTTTGTACAGCTGGCGGAT-TTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGCCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgtcacaaggataaccatgcacagattttatag Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatactatcagtactatttaatctttgtggtcttttcagAGGAAAGTCAACAGTTTTGAGCTTTGTACAGCTGGCGGATTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGCCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgtcacaaggataaccatgcacagattttatag Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatactatcagtactatttaatctttgtggtcttttcagAGGAAAGTCAACAGTTTTGAGCTTTGTACAGCTGGCGGATTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGCCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgtcacaaggataaccatgcacagattttatag Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatactatcagtactatttaatctttgtggtcttttcagAGGAAAGTCAACAGTTTTGAGCTTTGTACAGCTGGCGGATTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGCCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtgagttgttgacccaatgtcacaaggataaccatgcacagattttatag #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTG-GAATCACTGCAGGAGCTCATGAAG cttacactgggctttctttgtttatcataaagtgctttcctttattttagCAGTGCGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGCGAATCAC-GCAGGAACTCATGAAGgtgagttatgaacagatcatggaaaaatagaattgtactggtgcagtgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttacactgggctttctttgtttatcataaagtgctttcctttattttagCAGTGCGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGCGAATCACGCAGGAACTCATGAAGgtgagttatgaacagatcatggaaaaatagaattgtactggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttacactgggctttctttgtttatcataaagtgctttcctttattttagCAGTGCGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGCGAATCACGCAGGAACTCATGAAGgtgagttatgaacagatcatggaaaaatagaattgtactggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttacactgggctttctttgtttatcataaagtgctttcctttattttagCAGTGCGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGCGAATCACGCAGGAACTCATGAAGgtgagttatgaacagatcatggaaaaatagaattgtactggtgcagtgca Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTG-GAATCACTGCAGGAGCTCATGAAG cttacactgggctttctttgtttatcataaagtgctttcctttattttagCAGTGCGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGCGAATCAC-GCAGGAACTCATGAAGgtgagttatgaacagatcatggaaaaatagaattgtactggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttacactgggctttctttgtttatcataaagtgctttcctttattttagCAGTGCGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGCGAATCACGCAGGAACTCATGAAGgtgagttatgaacagatcatggaaaaatagaattgtactggtgcagtgca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttacactgggctttctttgtttatcataaagtgctttcctttattttagCAGTGCGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGCGAATCACGCAGGAACTCATGAAGgtgagttatgaacagatcatggaaaaatagaattgtactggtgcagtgca #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGA-GCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatcactcctaacctgaaatatgggcacgtataatttggtcttgccctagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGCGCAGGACTCA-TAAGCCAGGTACTTCTCCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCTTACTTAAGTGTGTTGAATCTCTGTCCTTTATTATCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATggtgagctatcctacacaccagtgagtacatcatgagtgacatggaggaat Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatcactcctaacctgaaatatgggcacgtataatttggtcttgccctagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGCGCAGGACTCATAAGCCAGGTACTTCTCCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCTTACTTAAGTGTGTTGAATCTCTGTCCTTTATTATCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATggtgagctatcctacacaccagtgagtacatcatgagtgacatggaggaat Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcactcctaacctgaaatatgggcacgtataatttggtcttgccctagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGCGCAGGACTCATAAGCCAGGTACTTCTCCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCTTACTTAAGTGTGTTGAATCTCTGTCCTTTATTATCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtgagctatcctacacaccagtgagtacatcatgagtgacatggaggaat Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGA-GCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcactcctaacctgaaatatgggcacgtataatttggtcttgccctagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGCGCAGGACTCA-TAAGCCAGGTACTTCTCCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCTTACTTAAGTGTGTTGAATCTCTGTCCTTTATTATCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtgagctatcctacacaccagtgagtacatcatgagtgacatggaggaat Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGA-GCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcactcctaacctgaaatatgggcacgtataatttggtcttgccctagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGCGCAGGACTCA-TAAGCCAGGTACTTCTCCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCTTACTTAAGTGTGTTGAATCTCTGTCCTTTATTATCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtgagctatcctacacaccagtgagtacatcatgagtgacatggaggaat Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcactcctaacctgaaatatgggcacgtataatttggtcttgccctagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGCGCAGGACTCATAAGCCAGGTACTTCTCCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCTTACTTAAGTGTGTTGAATCTCTGTCCTTTATTATCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtgagctatcctacacaccagtgagtacatcatgagtgacatggaggaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcactcctaacctgaaatatgggcacgtataatttggtcttgccctagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGCGCAGGACTCATAAGCCAGGTACTTCTCCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCTTACTTAAGTGTGTTGAATCTCTGTCCTTTATTATCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtgagctatcctacacaccagtgagtacatcatgagtgacatggaggaat #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTG-GGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacaacatacaccccaaagggttgatacttctatttcttctctgcccagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGTCCTGCAGAGGTACGGTGGGA-GGAAGAGACACGAATGCGGGCATCTACACTCCTTTCAAAGgtgtgttaccttgtttgcacactgacaagatggttatctcatcactggag Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacaacatacaccccaaagggttgatacttctatttcttctctgcccagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGTCCTGCAGAGGTACGGTGGGAGGAAGAGACACGAATGCGGGCATCTACACTCCTTTCAAAGgtgtgttaccttgtttgcacactgacaagatggttatctcatcactggag Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacaacatacaccccaaagggttgatacttctatttcttctctgcccagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGTCCTGCAGAGGTACGGTGGGAGGAAGAGACACGAATGCGGGCATCTACACTCCTTTCAAAGgtgtgttaccttgtttgcacactgacaagatggttatctcatcactggag Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacaacatacaccccaaagggttgatacttctatttcttctctgcccagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGTCCTGCAGAGGTACGGTGGGAGGAAGAGACACGAATGCGGGCATCTACACTCCTTTCAAAGgtgtgttaccttgtttgcacactgacaagatggttatctcatcactggag Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacaacatacaccccaaagggttgatacttctatttcttctctgcccagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGTCCTGCAGAGGTACGGTGGGAGGAAGAGACACGAATGCGGGCATCTACACTCCTTTCAAAGgtgtgttaccttgtttgcacactgacaagatggttatctcatcactggag Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacaacatacaccccaaagggttgatacttctatttcttctctgcccagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGTCCTGCAGAGGTACGGTGGGAGGAAGAGACACGAATGCGGGCATCTACACTCCTTTCAAAGgtgtgttaccttgtttgcacactgacaagatggttatctcatcactggag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacaacatacaccccaaagggttgatacttctatttcttctctgcccagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGTCCTGCAGAGGTACGGTGGGAGGAAGAGACACGAATGCGGGCATCTACACTCCTTTCAAAGgtgtgttaccttgtttgcacactgacaagatggttatctcatcactggag #### Gbf1_ID9819_38 --> 2 - 1 Original Alignment acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTG-ACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagacCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGCATCCCTGCAG-TGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTggtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from CESAR acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagacCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGCATCCCTGCAGTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTggtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Spaln_aa2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGCATCCCTGCAGTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Spaln_nt2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTC-TGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGCATCCCTGCAG-TGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Pairagon ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGC--TGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGCATCC--CTGCAGTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Exonerate_protein2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGCATCCCTGCAGTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGCATCCCTGCAGTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata #### Gif_ID3278_2 --> 2 - 1 Original Alignment ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTG-ACTTACCAGCTCATGGCCAGTGACAGTGCAg gtcattctgtggagctgcacacatgtaggactgtatcttcttcatggcagctGTTCCCCTAGATCAGCAGCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCTAACCCAACCATG---ATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGACCTCAAAAACTCCTGCACTT-CCAGCTAATGGCCAGTGAAAGTGCAggttaagcactaagggcacatctttaccatgagtctttcatgttcgcccaa Alignment from CESAR ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAg gtcattctgtggagctgcacacatgtaggactgtatcttcttcatggcagctGTTCCCCTAGATCAGCAGCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGACCTCAAAAACTCCTGCACTTCCAGCTAATGGCCAGTGAAAGTGCAggttaagcactaagggcacatctttaccatgagtctttcatgttcgcccaa Alignment from Spaln_aa2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagctgcacacatgtaggactgtatcttcttcatggcagCTGTTCCCCTAGATCAGCAGCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGACCTCAAAAACTCCTGCACTTCCAGCTAATGGCCAGTGAAAGTGCAGgttaagcactaagggcacatctttaccatgagtctttcatgttcgcccaa Alignment from Spaln_nt2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagctgcacacatgtaggactgtatcttcttcatggcagCTGTTCCCCTAGATCAGCAGCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCTAACCCAACCA---TGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGACCTCAAAAACTCCTGCACTTCCAGCTAATGGCCAGTGAAAGTGCAGgttaagcactaagggcacatctttaccatgagtctttcatgttcgcccaa Alignment from Pairagon CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagctgcacacatgtaggactgtatcttcttcatggcagCTGTTCCCCTAGATCAGCAGCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCTAACCCAACCA---TGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGACCTCAAAAACTCCTGCACTTCCAGCTAATGGCCAGTGAAAGTGCAGgttaagcactaagggcacatctttaccatgagtctttcatgttcgcccaa Alignment from Exonerate_protein2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagctgcacacatgtaggactgtatcttcttcatggcagCTGTTCCCCTAGATCAGCAGCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGACCTCAAAAACTCCTGCACTTCCAGCTAATGGCCAGTGAAAGTGCAGgttaagcactaagggcacatctttaccatgagtctttcatgttcgcccaa Alignment from Exonerate_coding2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagctgcacacatgtaggactgtatcttcttcatggcagCTGTTCCCCTAGATCAGCAGCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGACCTCAAAAACTCCTGCACTTCCAGCTAATGGCCAGTGAAAGTGCAGgttaagcactaagggcacatctttaccatgagtctttcatgttcgcccaa Alignment from GeneWise CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gtcattctgtggagctgcacacatgtaggactgtatcttcttcatggcagCTGTTCCCCTAGATCAGCAGCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAATTCAGTGACTGACTCTGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGACCTCAAAAACTCCTGCACTTCCAGCTAATGGCCAGTGAAAGTGCAGgttaagcactaagggcacatctttaccatgagtctttcatgttcgcccaa #### Gif_ID3279_3 --> 2 - 1 Original Alignment acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACT-CTACTGAAGAAAATGGAGAACTGGTCACCTTCAa tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagacTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACTCCTG---AGGA-AATGGAAAACTGGTCACCTTCAagtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from CESAR acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAa tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagacTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACTCCT---GAGGAAATGGAAAACTGGTCACCTTCAagtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Spaln_aa2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACT---CCTGAGGAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Spaln_nt2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACTC--CTG-AGGAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Pairagon ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACTC--CTG-AGGAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Exonerate_protein2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACT---CCTGAGGAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Exonerate_coding2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACT---CCTGAGGAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from GeneWise ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACTCCT---GAGGAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa #### Gldc_ID6390_24 --> 0 - 0 Original Alignment ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCC-TGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG ttaactatccctgccagggcaattttttcgagctctgaactgcattgcagATGTCACCACATTCCTTGATCTGTGTAACCTCCTCACTGCTGGGATC-GCCCTATTCCCGGGAGGTTGTTGCATTCCCACTGgtatggcctgtaggtgatttaacctcagagtctctttgtgtctaactgag Alignment from CESAR ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCC-TGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG ttaactatccctgccagggcaattttttcgagctctgaactgcattgcagATGTCACCACATTCCTTGATCTGTGTAACCTCCTCACTGCTGGGATCGCC-CTATTCCCGGGAGGTTGTTGCATTCCCACTGgtatggcctgtaggtgatttaacctcagagtctctttgtgtctaactgag Alignment from Spaln_aa2Genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG ttaactatccctgccagggcaattttttcgagctctgaactgcattgcagATGTCACCACATTCCTTGATCTGTGTAACCTCCTCACTGCTGGGATCGCCCTATTCCCGGGAGGTTGTTGCATTCCCACTGgtatggcctgtaggtgatttaacctcagagtctctttgtgtctaactgag Alignment from Spaln_nt2Genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTC-CTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG ttaactatccctgccagggcaattttttcgagctctgaactgcattgcagATGTCACCACATTCCTTGATCTGTGTAACCTCCTCACTGCTGGGATC-GCCCTATTCCCGGGAGGTTGTTGCATTCCCACTGgtatggcctgtaggtgatttaacctcagagtctctttgtgtctaactgag Alignment from Pairagon ATGTCTCCACACTCCTTGACCTGTGTCACATCCTC-CTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG ttaactatccctgccagggcaattttttcgagctctgaactgcattgcagATGTCACCACATTCCTTGATCTGTGTAACCTCCTCACTGCTGGGATC-GCCCTATTCCCGGGAGGTTGTTGCATTCCCACTGgtatggcctgtaggtgatttaacctcagagtctctttgtgtctaactgag Alignment from Exonerate_protein2genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG ttaactatccctgccagggcaattttttcgagctctgaactgcattgcagATGTCACCACATTCCTTGATCTGTGTAACCTCCTCACTGCTGGGATCGCCCTATTCCCGGGAGGTTGTTGCATTCCCACTGgtatggcctgtaggtgatttaacctcagagtctctttgtgtctaactgag Alignment from Exonerate_coding2genome ttaactatccctgccagggcaattttttcgagctctgaactgcattgcagatgtcaccacattccttgatctgtgtaacctcctcactgctgggatcgccctattcccgggaggttgttgcattcccactggtatggcctgtaggtgatttaacctcagagtctctttgtgtctaactgag Alignment from GeneWise ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG ttaactatccctgccagggcaattttttcgagctctgaactgcattgcagATGTCACCACATTCCTTGATCTGTGTAACCTCCTCACTGCTGGGATCGCCCTATTCCCGGGAGGTTGTTGCATTCCCACTGgtatggcctgtaggtgatttaacctcagagtctctttgtgtctaactgag #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACT-AATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggaatggctaatctctgtgtttatttgcctctcttgcttgtgaagtTACCACTCAGAAACTCAATCTTGTTC-GTACATGAAGAGATTGGAGAACCAAGATATTTCCCTTTTACACAGTATGATTCCTCTAgtaacagcagtatgactggttaccatgtacattggtatctatcaggtgtg Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggaatggctaatctctgtgtttatttgcctctcttgcttgtgaagtTACCACTCAGAAACTCAATCTTGTTCGTACATGAAGAGATTGGAGAACCAAGATATTTCCCTTTTACACAGTATGATTCCTCTAgtaacagcagtatgactggttaccatgtacattggtatctatcaggtgtg Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggaatggctaatctctgtgtttatttgcctctcttgcttgtgaagTTACCACTCAGAAACTCAATCTTGTTCGTACATGAAGAGATTGGAGAACCAAGATATTTCCCTTTTACACAGTATGATTCCTCTAgtaacagcagtatgactggttaccatgtacattggtatctatcaggtgtg Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggaatggctaatctctgtgtttatttgcctctcttgcttgtgaagTTACCACTCAGAAACTCAATCTTGTTCGTACATGAAGAGATTGGAGAACCAAGATATTTCCCTTTTACACAGTATGATTCCTCTAgtaacagcagtatgactggttaccatgtacattggtatctatcaggtgtg Alignment from Pairagon CTATCACTCAGAAACT-AATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggaatggctaatctctgtgtttatttgcctctcttgcttgtgaagTTACCACTCAGAAACTCAATCTTGTTC-GTACATGAAGAGATTGGAGAACCAAGATATTTCCCTTTTACACAGTATGATTCCTCTAgtaacagcagtatgactggttaccatgtacattggtatctatcaggtgtg Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggaatggctaatctctgtgtttatttgcctctcttgcttgtgaagTTACCACTCAGAAACTCAATCTTGTTCGTACATGAAGAGATTGGAGAACCAAGATATTTCCCTTTTACACAGTATGATTCCTCTAgtaacagcagtatgactggttaccatgtacattggtatctatcaggtgtg Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggaatggctaatctctgtgtttatttgcctctcttgcttgtgaagTTACCACTCAGAAACTCAATCTTGTTCGTACATGAAGAGATTGGAGAACCAAGATATTTCCCTTTTACACAGTATGATTCCTCTAgtaacagcagtatgactggttaccatgtacattggtatctatcaggtgtg Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggaatggctaatctctgtgtttatttgcctctcttgcttgtgaagTTACCACTCAGAAACTCAATCTTGTTCGTACATGAAGAGATTGGAGAACCAAGATATTTCCCTTTTACACAGTATGATTCCTCTAgtaacagcagtatgactggttaccatgtacattggtatctatcaggtgtg #### Gpam_ID11543_6 --> 1 - 0 Original Alignment gCTGACTGGCTGGGTGTTACTAAAGCTCTTC-AACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgcccattctctggttcatcatgatgcagtcttttcccctctcctcccaggTTGACTGGCTGGGTATTACTAAAGCTCTTCCAACAGCT-CTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtgcgatccgaacttaaaaacctaaagggagatgtgcattactgaatgtt Alignment from CESAR gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgcccattctctggttcatcatgatgcagtcttttcccctctcctcccaggTTGACTGGCTGGGTATTACTAAAGCTCTTCCAACAGCTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtgcgatccgaacttaaaaacctaaagggagatgtgcattactgaatgtt Alignment from Spaln_aa2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgcccattctctggttcatcatgatgcagtcttttcccctctcctcccagGTTGACTGGCTGGGTATTACTAAAGCTCTTCCAACAGCTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtgcgatccgaacttaaaaacctaaagggagatgtgcattactgaatgtt Alignment from Spaln_nt2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgcccattctctggttcatcatgatgcagtcttttcccctctcctcccagGTTGACTGGCTGGGTATTACTAAAGCTCTTCCAACAGCTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtgcgatccgaacttaaaaacctaaagggagatgtgcattactgaatgtt Alignment from Pairagon GCTGACTGGCTGGGTGTTACTAAAGCTCTT-CAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgcccattctctggttcatcatgatgcagtcttttcccctctcctcccagGTTGACTGGCTGGGTATTACTAAAGCTCTTCCAACAGC-TCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtgcgatccgaacttaaaaacctaaagggagatgtgcattactgaatgtt Alignment from Exonerate_protein2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgcccattctctggttcatcatgatgcagtcttttcccctctcctcccagGTTGACTGGCTGGGTATTACTAAAGCTCTTCCAACAGCTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtgcgatccgaacttaaaaacctaaagggagatgtgcattactgaatgtt Alignment from Exonerate_coding2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgcccattctctggttcatcatgatgcagtcttttcccctctcctcccagGTTGACTGGCTGGGTATTACTAAAGCTCTTCCAACAGCTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtgcgatccgaacttaaaaacctaaagggagatgtgcattactgaatgtt Alignment from GeneWise GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgcccattctctggttcatcatgatgcagtcttttcccctctcctcccagGTTGACTGGCTGGGTATTACTAAAGCTCTTCCAACAGCTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCCACCGAGgtgcgatccgaacttaaaaacctaaagggagatgtgcattactgaatgtt #### Hectd2_ID7162_18 --> 2 - 0 Original Alignment agTATGTACAGCTTTATACTGACTTC-CTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagagTACATACAACTCTATACTGACTTCCCTGTTAAACA-GTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from CESAR agTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagagTACATACAACTCTATACTGACTTCCCTGTTAAACAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Spaln_aa2Genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCCTGTTAAACAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Spaln_nt2Genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCCTGTTAAACAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Pairagon AGTATGTACAGCTTTATACTGACTT-CCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCCTGTTAAAC-AGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Exonerate_protein2genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCCTGTTAAACAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Exonerate_coding2genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCCTGTTAAACAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from GeneWise AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCCTGTTAAACAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca #### Hells_ID7707_14 --> 1 - 0 Original Alignment gACTGTTGTGGAAGGTAATATCCCTATAGAA-TCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG agtcactataataacctataaactagggagttcgttttcttgtttcctagaACAGCTGTGCAAGGTAATATTCCTATAGAACTCAG-AGTGAATTTGAAGCTGCGGAATATCATGATGTTACTCCAGAGATGCTATAACCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAGTTTAAAgtgagtgtgacaaatgaaccaaccagattgacttggtacagaagacaaga Alignment from CESAR gACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG agtcactataataacctataaactagggagttcgttttcttgtttcctagaACAGCTGTGCAAGGTAATATTCCTATAGAACTCAGAGTGAATTTGAAGCTGCGGAATATCATGATGTTACTCCAGAGATGCTATAACCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAGTTTAAAgtgagtgtgacaaatgaaccaaccagattgacttggtacagaagacaaga Alignment from Spaln_aa2Genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG agtcactataataacctataaactagggagttcgttttcttgtttcctagAACAGCTGTGCAAGGTAATATTCCTATAGAACTCAGAGTGAATTTGAAGCTGCGGAATATCATGATGTTACTCCAGAGATGCTATAACCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAGTTTAAAgtgagtgtgacaaatgaaccaaccagattgacttggtacagaagacaaga Alignment from Spaln_nt2Genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG agtcactataataacctataaactagggagttcgttttcttgtttcctagAACAGCTGTGCAAGGTAATATTCCTATAGAACTCAGAGTGAATTTGAAGCTGCGGAATATCATGATGTTACTCCAGAGATGCTATAACCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAGTTTAAAgtgagtgtgacaaatgaaccaaccagattgacttggtacagaagacaaga Alignment from Pairagon GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG agtcactataataacctataaactagggagttcgttttcttgtttcctagAACAGCTGTGCAAGGTAATATTCCTATAGAACTCAGAGTGAATTTGAAGCTGCGGAATATCATGATGTTACTCCAGAGATGCTATAACCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAGTTTAAAgtgagtgtgacaaatgaaccaaccagattgacttggtacagaagacaaga Alignment from Exonerate_protein2genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG agtcactataataacctataaactagggagttcgttttcttgtttcctagAACAGCTGTGCAAGGTAATATTCCTATAGAACTCAGAGTGAATTTGAAGCTGCGGAATATCATGATGTTACTCCAGAGATGCTATAACCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAGTTTAAAgtgagtgtgacaaatgaaccaaccagattgacttggtacagaagacaaga Alignment from Exonerate_coding2genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG agtcactataataacctataaactagggagttcgttttcttgtttcctagAACAGCTGTGCAAGGTAATATTCCTATAGAACTCAGAGTGAATTTGAAGCTGCGGAATATCATGATGTTACTCCAGAGATGCTATAACCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAGTTTAAAgtgagtgtgacaaatgaaccaaccagattgacttggtacagaagacaaga Alignment from GeneWise GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG agtcactataataacctataaactagggagttcgttttcttgtttcctagAACAGCTGTGCAAGGTAATATTCCTATAGAACTCAGAGTGAATTTGAAGCTGCGGAATATCATGATGTTACTCCAGAGATGCTATAACCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAGTTTAAAgtgagtgtgacaaatgaaccaaccagattgacttggtacagaagacaaga #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCT-CCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt ggataagttataataacatgtttggcatttcactcttttctctctcatagcTCAAGGTCTCCCCTACCTCCCAGAGG-AGAAGCTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAACTTGGATACTtgtaagaggttgcatgttctggcttatcttcagaaatgtagtactttccta Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt ggataagttataataacatgtttggcatttcactcttttctctctcatagcTCAAGGTCTCCCCTACCTCCCAGAGGAGAAGCTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAACTTGGATACTtgtaagaggttgcatgttctggcttatcttcagaaatgtagtactttccta Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataataacatgtttggcatttcactcttttctctctcatagCTCAAGGTCTCCCCTACCTCCCAGAGGAGAAGCTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAACTTGGATACTTgtaagaggttgcatgttctggcttatcttcagaaatgtagtactttccta Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataataacatgtttggcatttcactcttttctctctcatagCTCAAGGTCTCCCCTACCTCCCAGAGGAGAAGCTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAACTTGGATACTTgtaagaggttgcatgttctggcttatcttcagaaatgtagtactttccta Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataataacatgtttggcatttcactcttttctctctcatagCTCAAGGTCTCCCCTACCTCCCAGAGGAGAAGCTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAACTTGGATACTTgtaagaggttgcatgttctggcttatcttcagaaatgtagtactttccta Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataataacatgtttggcatttcactcttttctctctcatagCTCAAGGTCTCCCCTACCTCCCAGAGGAGAAGCTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAACTTGGATACTTgtaagaggttgcatgttctggcttatcttcagaaatgtagtactttccta Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataataacatgtttggcatttcactcttttctctctcatagCTCAAGGTCTCCCCTACCTCCCAGAGGAGAAGCTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAACTTGGATACTTgtaagaggttgcatgttctggcttatcttcagaaatgtagtactttccta Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataataacatgtttggcatttcactcttttctctctcatagCTCAAGGTCTCCCCTACCTCCCAGAGGAGAAGCTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAACTTGGATACTTgtaagaggttgcatgttctggcttatcttcagaaatgtagtactttccta #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGG-TCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG tcttcggcactgaatgtcacactgaatcttttctctttttcacacaaaaggtACATCTGATCTGCATTTTCAAATTAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCCACCCTTTGGCTCCG-GGCAAGAAGTACCTATGGTGTAACAGAGGGTAAAGTATGCTTTGAAGCTAGGgtactatgctatctttaaaccaagtatgctagctttttaccactccaaac Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG tcttcggcactgaatgtcacactgaatcttttctctttttcacacaaaaggtACATCTGATCTGCATTTTCAAATTAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCCACCCTTTGGCTCCGGGCAAGAAGTACCTATGGTGTAACAGAGGGTAAAGTATGCTTTGAAGCTAGGgtactatgctatctttaaaccaagtatgctagctttttaccactccaaac Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG tcttcggcactgaatgtcacactgaatcttttctctttttcacacaaaagGTACATCTGATCTGCATTTTCAAATTAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCCACCCTTTGGCTCCGGGCAAGAAGTACCTATGGTGTAACAGAGGGTAAAGTATGCTTTGAAGCTAGGgtactatgctatctttaaaccaagtatgctagctttttaccactccaaac Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG tcttcggcactgaatgtcacactgaatcttttctctttttcacacaaaagGTACATCTGATCTGCATTTTCAAATTAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCCACCCTTTGGCTCCGGGCAAGAAGTACCTATGGTGTAACAGAGGGTAAAGTATGCTTTGAAGCTAGGgtactatgctatctttaaaccaagtatgctagctttttaccactccaaac Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG tcttcggcactgaatgtcacactgaatcttttctctttttcacacaaaagGTACATCTGATCTGCATTTTCAAATTAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCCACCCTTTGGCTCCGGGCAAGAAGTACCTATGGTGTAACAGAGGGTAAAGTATGCTTTGAAGCTAGGgtactatgctatctttaaaccaagtatgctagctttttaccactccaaac Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG tcttcggcactgaatgtcacactgaatcttttctctttttcacacaaaagGTACATCTGATCTGCATTTTCAAATTAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCCACCCTTTGGCTCCGGGCAAGAAGTACCTATGGTGTAACAGAGGGTAAAGTATGCTTTGAAGCTAGGgtactatgctatctttaaaccaagtatgctagctttttaccactccaaac Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG tcttcggcactgaatgtcacactgaatcttttctctttttcacacaaaagGTACATCTGATCTGCATTTTCAAATTAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCCACCCTTTGGCTCCGGGCAAGAAGTACCTATGGTGTAACAGAGGGTAAAGTATGCTTTGAAGCTAGGgtactatgctatctttaaaccaagtatgctagctttttaccactccaaac Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG tcttcggcactgaatgtcacactgaatcttttctctttttcacacaaaagGTACATCTGATCTGCATTTTCAAATTAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCCACCCTTTGGCTCCGGGCAAGAAGTACCTATGGTGTAACAGAGGGTAAAGTATGCTTTGAAGCTAGGgtactatgctatctttaaaccaagtatgctagctttttaccactccaaac #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAG-TACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagtgGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGCTACTGGGGGC-GCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagtgGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGCTACTGGGGGCGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGCTACTGGGGGCGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAG-TACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGCTACTGGGGGC-GCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAG-TACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGCTACTGGGGGC-GCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGCTACTGGGGGCGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGCTACTGGGGGCGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGCTACTGGGGGCGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCT-TGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtaaatcaacctatccaattgtggctgctttcttacccccactttgtagctATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAAGTTGGTGCTGATGTCGCCATGGTGGTGACTCCACTGTT-CTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgttagaaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtaaatcaacctatccaattgtggctgctttcttacccccactttgtagctATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAAGTTGGTGCTGATGTCGCCATGGTGGTGACTCCACTGTTCTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgttagaaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtaaatcaacctatccaattgtggctgctttcttacccccactttgtagCTATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAAGTTGGTGCTGATGTCGCCATGGTGGTGACTCCACTGTTCTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgttagaaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtaaatcaacctatccaattgtggctgctttcttacccccactttgtagCTATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAAGTTGGTGCTGATGTCGCCATGGTGGTGACTCCACTGTTCTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgttagaaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtaaatcaacctatccaattgtggctgctttcttacccccactttgtagCTATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAAGTTGGTGCTGATGTCGCCATGGTGGTGACTCCACTGTTCTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgttagaaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtaaatcaacctatccaattgtggctgctttcttacccccactttgtagCTATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAAGTTGGTGCTGATGTCGCCATGGTGGTGACTCCACTGTTCTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgttagaaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Exonerate_coding2genome CCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGTCCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtaaatcaaCCTATCCAATTGTGGCTGCTTTCTTACCCCCACTTTGTAGCTATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAAGTTGGTGCTGATGTCGCCATGGTGGTGACTCCACTGTTCTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgttagaaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtaaatcaacctatccaattgtggctgctttcttacccccactttgtagCTATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAAGTTGGTGCTGATGTCGCCATGGTGGTGACTCCACTGTTCTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgttagaaggaatggttgagatatgctttaagtattgattgaaggaagcta #### Hps1_ID8616_12 --> 0 - 2 Original Alignment AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGT-GAGCCAGGATCGTCCTGGga tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTC---TCTAAGGGTCCAGC-AGGA------CGGgagtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from CESAR AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTC---TCTAAGGGTCCAGCAGGA------CGGgagtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Spaln_aa2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTC---------TCTAAGGGTCCAGCAGGACGGGAgtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Spaln_nt2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAG---TCTCTAAGGGTCCAGCAGGA------CGGGAgtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Pairagon AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCT----------------GGGA tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTCT-------------------------CTAAGGGTCCAGCAGGACGGGAgtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Exonerate_protein2genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTCTCTAAGGGTCCAGCAGGACGGGAGTAAGTCTAttatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Exonerate_coding2genome tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagaatgcctggctggaatttaagagtaaagtctctaagggtccagcaggacgggagtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from GeneWise AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTC tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTC---TCTAAGGGTCCAGCAGGACGGGAgtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTG-CGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtcttactccgcttggctcccccactctccttccactgtccccagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCTTTACCGATCCC-GCCCTTTGTGACCGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTCGGGCAGGAGGTCCAGgtactgtcacagaactaatgtggactgattttgggaccctggctacagcc Alignment from CESAR AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtcttactccgcttggctcccccactctccttccactgtccccagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCTTTACCGATCCCGCCCTTTGTGACCGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTCGGGCAGGAGGTCCAGgtactgtcacagaactaatgtggactgattttgggaccctggctacagcc Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtcttactccgcttggctcccccactctccttccactgtccccagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCTTTACCGATCCCGCCCTTTGTGACCGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTCGGGCAGGAGGTCCAGgtactgtcacagaactaatgtggactgattttgggaccctggctacagcc Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGC-GATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtcttactccgcttggctcccccactctccttccactgtccccagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCTTTACCGATCCC-GCCCTTTGTGACCGACCCACACCAGAACA---ACAAGTTCATCAAGAATCGGGTCGGGCAGGAGGTCCAGgtactgtcacagaactaatgtggactgattttgggaccctggctacagcc Alignment from Pairagon AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtcttactccgcttggctcccccactctccttccactgtccccagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCTTTACCGATCCCGCCCTTTGTGACCGACCCACACCAGAACA---ACAAGTTCATCAAGAATCGGGTCGGGCAGGAGGTCCAGgtactgtcacagaactaatgtggactgattttgggaccctggctacagcc Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtcttactccgcttggctcccccactctccttccactgtccccagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCTTTACCGATCCCGCCCTTTGTGACCGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTCGGGCAGGAGGTCCAGgtactgtcacagaactaatgtggactgattttgggaccctggctacagcc Alignment from Exonerate_coding2genome gacctgtcttactccgcttggctcccccactctccttccactgtccccagagccctggtgccccactaacccaaatcctatgccaactgctggatggattctcccttctggagaaaaggttgaaggagggccaggaggctggtagtgctttaccgatcccgccctttgtgaccgacccacaccagaacaacaagttcatcaagaatcgggtcgggcaggaggtccaggtactgtcacagaactaatgtggactgattttgggaccctggctacagcc Alignment from GeneWise AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gacctgtcttactccgcttggctcccccactctccttccactgtccccagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGATTCTCCCTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGTAGTGCTTTACCGATCCCGCCCTTTGTGACCGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTCGGGCAGGAGGTCCAGgtactgtcacagaactaatgtggactgattttgggaccctggctacagcc #### Hps1_ID8620_8 --> 0 - 1 Original Alignment GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCT-CCTTCCCCAGGCGATCAGAGTTCAg tggtaagcaaactagggtgtactctctgttcggtgttggtccatgggcagGATACTGAT---AATTCC---CCGGAAGAGTATTTCACTCCCTCTCCCTTCCC-AAGT------GGTCCAggtaagcggagcaggtgtggcgccctgttatgtcacttagctaagtacaga Alignment from CESAR GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg tggtaagcaaactagggtgtactctctgttcggtgttggtccatgggcagGATACTGATAAT---TCC---CCGGAAGAGTATTTCACTCCCTCTCCCTTCCCAAGT------GGTCCAggtaagcggagcaggtgtggcgccctgttatgtcacttagctaagtacaga Alignment from Spaln_aa2Genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTA tggtaagcaaactagggtgtactctctgttcggtgttggtccatgggcagGATACTGATAATTCC------CCGGAAGAGTATTTCACTCCCTCTCCCTTCCCAAGTGGTCCAGGTAAGCGGAgcaggtgtggcgccctgttatgtcacttagctaagtacaga Alignment from Spaln_nt2Genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG tggtaagcaaactagggtgtactctctgttcggtgttggtccatgggcagGATACTGATA--AT-TC---CCCGGAAGAGTATTTCACTCCCTCTCCCTTCCCAAGTG------GTCCAGgtaagcggagcaggtgtggcgccctgttatgtcacttagctaagtacaga Alignment from Pairagon ----------------------------------------------------------------CCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG TGGTAAGCAAACTAGGGTGTACTCTCTGTTCGGTGTTGGTCCATGGGCAGGATACTGATAATTCCCCGGAAGAGTATTTCACTCCCTCTCCCTTCCCAAGTG------GTCCAGgtaagcggagcaggtgtggcgccctgttatgtcacttagctaagtacaga Alignment from Exonerate_protein2genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTA tggtaagcaaactagggtgtactctctgttcggtgttggtccatGGGCAGGATACTGATAATTCCCCGGAAGAGTATTTCACTCCCTCTCCCTTCCCAAGTGGTCCAGGTAAGCGGAgcaggtgtggcgccctgttatgtcacttagctaagtacaga Alignment from Exonerate_coding2genome tggtaagcaaactagggtgtactctctgttcggtgttggtccatgggcaggatactgataattccccggaagagtatttcactccctctcccttcccaagtggtccaggtaagcggagcaggtgtggcgccctgttatgtcacttagctaagtacaga Alignment from GeneWise --------------------------------------------GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTAGCCT TGGTAAGCAAACTAGGGTGTACTCTCTGTTCGGTGTTGGTCCATGGGCAGGATACTGATAATTCCCCGGAAGAGTATTTCACTCCCTCTCCCTTCCCAAGTGGTCCAGGTAAGCGGAGCAGgtgtggcgccctgttatgtcacttagctaagtacaga #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAA-AAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccaggGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAACAAAGAAC-GCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccaggGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAACAAAGAACGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAACAAAGAACGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAACAAAGAACGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAA-AAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAACAAAGAACG-CTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAACAAAGAACGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAGGAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAA tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAACAAAGAACGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGGTGTGTGCCCTGCAGACATATATTCCGCACAGTAAGTCCGATCTGGAGCA Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAACAAAGAACGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca #### Incenp_ID2608_11 --> 1 - 0 Original Alignment gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAG-AAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG gttcagaatttacagagactctttgtagttcctttgcactcctgcctcaggAAGCGTGAAGAGCGGCTCCGCAAGGTGCTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAAGAGAGGCAAGAAGCAGA-TGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtgagcctgccatataacacagtgacacagagcagtgccttcttttggat Alignment from CESAR gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG gttcagaatttacagagactctttgtagttcctttgcactcctgcctcaggAAGCGTGAAGAGCGGCTCCGCAAGGTGCTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAAGAGAGGCAAGAAGCAGATGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtgagcctgccatataacacagtgacacagagcagtgccttcttttggat Alignment from Spaln_aa2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG gttcagaatttacagagactctttgtagttcctttgcactcctgcctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGCTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAAGAGAGGCAAGAAGCAGATGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtgagcctgccatataacacagtgacacagagcagtgccttcttttggat Alignment from Spaln_nt2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG gttcagaatttacagagactctttgtagttcctttgcactcctgcctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGCTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAAGAGAGGCAAGAAGCAGATGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtgagcctgccatataacacagtgacacagagcagtgccttcttttggat Alignment from Pairagon GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAG-AAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG gttcagaatttacagagactctttgtagttcctttgcactcctgcctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGCTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAAGAGAGGCAAGAAGCAGA-TGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtgagcctgccatataacacagtgacacagagcagtgccttcttttggat Alignment from Exonerate_protein2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG gttcagaatttacagagactctttgtagttcctttgcactcctgcctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGCTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAAGAGAGGCAAGAAGCAGATGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtgagcctgccatataacacagtgacacagagcagtgccttcttttggat Alignment from Exonerate_coding2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG gttcagaatttacagagactctttgtagttcctttgcactcctgcctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGCTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAAGAGAGGCAAGAAGCAGATGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtgagcctgccatataacacagtgacacagagcagtgccttcttttggat Alignment from GeneWise GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG gttcagaatttacagagactctttgtagttcctttgcactcctgcctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGCTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAAGAGAGGCAAGAAGCAGATGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtgagcctgccatataacacagtgacacagagcagtgccttcttttggat #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAG-TATCTCAACCTCATCAATTACTACAAG gtgctatggatctcacagatgtaaactgtgggactctgtctaacctgcagtGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGCTATCTCAACC-AATCAATTACTACAAGgtaagtgggcataattcacttgatgccaaaacttgcttatacttagatgt Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtgctatggatctcacagatgtaaactgtgggactctgtctaacctgcagtGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGCTATCTCAACCAATCAATTACTACAAGgtaagtgggcataattcacttgatgccaaaacttgcttatacttagatgt Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtgctatggatctcacagatgtaaactgtgggactctgtctaacctgcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGCTATCTCAACCAATCAATTACTACAAGgtaagtgggcataattcacttgatgccaaaacttgcttatacttagatgt Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAG-TATCTCAACCTCATCAATTACTACAAG gtgctatggatctcacagatgtaaactgtgggactctgtctaacctgcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGCTATCTCAACC-AATCAATTACTACAAGgtaagtgggcataattcacttgatgccaaaacttgcttatacttagatgt Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAG-TATCTCAACCTCATCAATTACTACAAG gtgctatggatctcacagatgtaaactgtgggactctgtctaacctgcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGCTATCTCAACC-AATCAATTACTACAAGgtaagtgggcataattcacttgatgccaaaacttgcttatacttagatgt Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtgctatggatctcacagatgtaaactgtgggactctgtctaacctgcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGCTATCTCAACCAATCAATTACTACAAGgtaagtgggcataattcacttgatgccaaaacttgcttatacttagatgt Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtgctatggatctcacagatgtaaactgtgggactctgtctaacctgcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGCTATCTCAACCAATCAATTACTACAAGgtaagtgggcataattcacttgatgccaaaacttgcttatacttagatgt Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtgctatggatctcacagatgtaaactgtgggactctgtctaacctgcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGCTATCTCAACCAATCAATTACTACAAGgtaagtgggcataattcacttgatgccaaaacttgcttatacttagatgt #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACT-CTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa agagagttgcaattacccaccaacctgttggccatgctctacccctctagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCCTAC-CCCCTACCAACGGCGTGGCTATGGTAGATTGCTTATTGAGTTCagtaaggctatactacctgctcatggtctgagctaaatagatcaggttgag Alignment from CESAR GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa agagagttgcaattacccaccaacctgttggccatgctctacccctctagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCCTACCCCCTACCAACGGCGTGGCTATGGTAGATTGCTTATTGAGTTCagtaaggctatactacctgctcatggtctgagctaaatagatcaggttgag Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcaattacccaccaacctgttggccatgctctacccctctagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCCTACCCCCTACCAACGGCGTGGCTATGGTAGATTGCTTATTGAGTTCAgtaaggctatactacctgctcatggtctgagctaaatagatcaggttgag Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcaattacccaccaacctgttggccatgctctacccctctagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCCTACCCCCTACCAACGGCGTGGCTATGGTAGATTGCTTATTGAGTTCAgtaaggctatactacctgctcatggtctgagctaaatagatcaggttgag Alignment from Pairagon GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcaattacccaccaacctgttggccatgctctacccctctagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCCTACCCCCTACCAACGGCGTGGCTATGGTAGATTGCTTATTGAGTTCAgtaaggctatactacctgctcatggtctgagctaaatagatcaggttgag Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcaattacccaccaacctgttggccatgctctacccctctagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCCTACCCCCTACCAACGGCGTGGCTATGGTAGATTGCTTATTGAGTTCAgtaaggctatactacctgctcatggtctgagctaaatagatcaggttgag Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcaattacccaccaacctgttggccatgctctacccctctagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCCTACCCCCTACCAACGGCGTGGCTATGGTAGATTGCTTATTGAGTTCAgtaaggctatactacctgctcatggtctgagctaaatagatcaggttgag Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcaattacccaccaacctgttggccatgctctacccctctagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCCTACCCCCTACCAACGGCGTGGCTATGGTAGATTGCTTATTGAGTTCAgtaaggctatactacctgctcatggtctgagctaaatagatcaggttgag #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGCGTG-AAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt aggctggccccaattgtcatctctaaacttgctctgttctttccttgcagcaTTGGCTGAGATCCTAAGTGTGCAAGGACA-TAGTGGCAGGAAGCTTTTCTATGTTTACTACATTGACtgtagggccaccctagaagatggttactcttgaagattagaagatcgacac Alignment from CESAR ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt aggctggccccaattgtcatctctaaacttgctctgttctttccttgcagcaTTGGCTGAGATCCTAAGTGTGCAAGGACATAGTGGCAGGAAGCTTTTCTATGTTTACTACATTGACtgtagggccaccctagaagatggttactcttgaagattagaagatcgacac Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT aggctggccccaattgtcatctctaaacttgctctgttctttccttgcagCATTGGCTGAGATCCTAAGTGTGCAAGGACATAGTGGCAGGAAGCTTTTCTATGTTTACTACATTGACTgtagggccaccctagaagatggttactcttgaagattagaagatcgacac Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT aggctggccccaattgtcatctctaaacttgctctgttctttccttgcagCATTGGCTGAGATCCTAAGTGTGCAAGGACATAGTGGCAGGAAGCTTTTCTATGTTTACTACATTGACTgtagggccaccctagaagatggttactcttgaagattagaagatcgacac Alignment from Pairagon CCCTGGCTGAGATCCTGAGCGTG-AAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT aggctggccccaattgtcatctctaaacttgctctgttctttccttgcagCATTGGCTGAGATCCTAAGTGTGCAAGGACAT-AGTGGCAGGAAGCTTTTCTATGTTTACTACATTGACTgtagggccaccctagaagatggttactcttgaagattagaagatcgacac Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT aggctggccccaattgtcatctctaaacttgctctgttctttccttgcagCATTGGCTGAGATCCTAAGTGTGCAAGGACATAGTGGCAGGAAGCTTTTCTATGTTTACTACATTGACTgtagggccaccctagaagatggttactcttgaagattagaagatcgacac Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT aggctggccccaattgtcatctctaaacttgctctgttctttccttgcagCATTGGCTGAGATCCTAAGTGTGCAAGGACATAGTGGCAGGAAGCTTTTCTATGTTTACTACATTGACTgtagggccaccctagaagatggttactcttgaagattagaagatcgacac Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT aggctggccccaattgtcatctctaaacttgctctgttctttccttgcagCATTGGCTGAGATCCTAAGTGTGCAAGGACATAGTGGCAGGAAGCTTTTCTATGTTTACTACATTGACTgtagggccaccctagaagatggttactcttgaagattagaagatcgacac #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGAC-ATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ctcagtggtgcggggtgttatgctacccctcctctactttgttgtcccagGACATGATTGACCATCA-GAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGGGAACACGTGGAAAGCTTCTTCCAAgtaagcgttgcaacttctggaatagtgggacatgtccagtctaggagtta Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ctcagtggtgcggggtgttatgctacccctcctctactttgttgtcccagGACATGATTGACCATCAGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGGGAACACGTGGAAAGCTTCTTCCAAgtaagcgttgcaacttctggaatagtgggacatgtccagtctaggagtta Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ctcagtggtgcggggtgttatgctacccctcctctactttgttgtcccagGACATGATTGACCATCAGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGGGAACACGTGGAAAGCTTCTTCCAAgtaagcgttgcaacttctggaatagtgggacatgtccagtctaggagtta Alignment from Spaln_nt2Genome GAAATGCTCGAC-ATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ctcagtggtgcggggtgttatgctacccctcctctactttgttgtcccagGACATGATTGACCATCA-GAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGGGAACACGTGGAAAGCTTCTTCCAAgtaagcgttgcaacttctggaatagtgggacatgtccagtctaggagtta Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ctcagtggtgcggggtgttatgctacccctcctctactttgttgtcccagGACATGATTGACCATCAGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGGGAACACGTGGAAAGCTTCTTCCAAgtaagcgttgcaacttctggaatagtgggacatgtccagtctaggagtta Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ctcagtggtgcggggtgttatgctacccctcctctactttgttgtcccagGACATGATTGACCATCAGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGGGAACACGTGGAAAGCTTCTTCCAAgtaagcgttgcaacttctggaatagtgggacatgtccagtctaggagtta Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ctcagtggtgcggggtgttatgctacccctcctctactttgttgtcccagGACATGATTGACCATCAGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGGGAACACGTGGAAAGCTTCTTCCAAgtaagcgttgcaacttctggaatagtgggacatgtccagtctaggagtta Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ctcagtggtgcggggtgttatgctacccctcctctactttgttgtcccagGACATGATTGACCATCAGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCACTCCGGGAGGAAGCCCCACGGGAACACGTGGAAAGCTTCTTCCAAgtaagcgttgcaacttctggaatagtgggacatgtccagtctaggagtta #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGAT-AGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGA---T-TTGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATT---TGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATT---TGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGA---CCAGATTTGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGAC---CAGATTTGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATT---TGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATT---TGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATT---TGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGAATTGTCAACGAGGAGAAC-TTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg atgtgcgaatctcatgattggttatatttttaaatcatttcctgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACCTTCAAGC-GGTCTATTCTCAGTTCTTTCCACAAGAAggttggtcacaggtatagtgggaagatgtaagcatggtatagccaagagaa Alignment from CESAR GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg atgtgcgaatctcatgattggttatatttttaaatcatttcctgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACCTTCAAGCGGTCTATTCTCAGTTCTTTCCACAAGAAggttggtcacaggtatagtgggaagatgtaagcatggtatagccaagagaa Alignment from Spaln_aa2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtgcgaatctcatgattggttatatttttaaatcatttcctgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACCTTCAAGCGGTCTATTCTCAGTTCTTTCCACAAGAAGgttggtcacaggtatagtgggaagatgtaagcatggtatagccaagagaa Alignment from Spaln_nt2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtgcgaatctcatgattggttatatttttaaatcatttcctgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACCTTCAAGCGGTCTATTCTCAGTTCTTTCCACAAGAAGgttggtcacaggtatagtgggaagatgtaagcatggtatagccaagagaa Alignment from Pairagon GAATGTCCCAGCGGAATTGTCAACGAGGAGAA-CTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtgcgaatctcatgattggttatatttttaaatcatttcctgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACCTTCAAGC-GGTCTATTCTCAGTTCTTTCCACAAGAAGgttggtcacaggtatagtgggaagatgtaagcatggtatagccaagagaa Alignment from Exonerate_protein2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtgcgaatctcatgattggttatatttttaaatcatttcctgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACCTTCAAGCGGTCTATTCTCAGTTCTTTCCACAAGAAGgttggtcacaggtatagtgggaagatgtaagcatggtatagccaagagaa Alignment from Exonerate_coding2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtgcgaatctcatgattggttatatttttaaatcatttcctgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACCTTCAAGCGGTCTATTCTCAGTTCTTTCCACAAGAAGgttggtcacaggtatagtgggaagatgtaagcatggtatagccaagagaa Alignment from GeneWise GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtgcgaatctcatgattggttatatttttaaatcatttcctgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACCTTCAAGCGGTCTATTCTCAGTTCTTTCCACAAGAAGgttggtcacaggtatagtgggaagatgtaagcatggtatagccaagagaa #### Kcnip2_ID9608_4 --> 2 - 0 Original Alignment acAGCGTGGAGGATGAGTTTGAACTA-TCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagatAGTGTTGAGGATGAGTTTGAACTGCTCAA-GATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from CESAR acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTG---CAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagatAGTGTTGAGGATGAGTTTGAACTGCTCAAGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Spaln_aa2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGCTCAAGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Spaln_nt2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAG---GTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGCTCAAGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Pairagon ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGT---TGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGCTCAAGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Exonerate_protein2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGCTCAAGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Exonerate_coding2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGCTCAAGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from GeneWise ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTG---CAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGCTCAAGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct #### Kcnip2_ID9609_3 --> 2 - 1 Original Alignment caTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGA-CCCCGCCCGCTGGACCCAg gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagcaTTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCC-ACCACTGGACCCAggtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from CESAR caTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAg gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagcaTTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCCACCACTGGACCCAggtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Spaln_aa2Genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCCACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Spaln_nt2Genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCCACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Pairagon CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCCACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Exonerate_protein2genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCCACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Exonerate_coding2genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCCACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from GeneWise CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCCACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATC-AATGTTTTGAAGAACAGTGAAAAGTCAaa cgttttggaaagaaagtctctgcagcactaggactgatgttgccttgcaggTTGTCGCCGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCTTGTTGACCTTGGGAATGTGTGTCCAATGTAT-AAAGAACAGTGAGAAGTCAaagtaagtgccagttgtgtcatagaatctgctgttctgagtactttctagga Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgttttggaaagaaagtctctgcagcactaggactgatgttgccttgcaggTTGTCGCCGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCTTGTTGACCTTGGGAATGTGTGTCCAATGTATAAAGAACAGTGAGAAGTCAaagtaagtgccagttgtgtcatagaatctgctgttctgagtactttctagga Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgttttggaaagaaagtctctgcagcactaggactgatgttgccttgcagGTTGTCGCCGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCTTGTTGACCTTGGGAATGTGTGTCCAATGTATAAAGAACAGTGAGAAGTCAAAgtaagtgccagttgtgtcatagaatctgctgttctgagtactttctagga Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgttttggaaagaaagtctctgcagcactaggactgatgttgccttgcagGTTGTCGCCGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCTTGTTGACCTTGGGAATGTGTGTCCAATGTATAAAGAACAGTGAGAAGTCAAAgtaagtgccagttgtgtcatagaatctgctgttctgagtactttctagga Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgttttggaaagaaagtctctgcagcactaggactgatgttgccttgcagGTTGTCGCCGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCTTGTTGACCTTGGGAATGTGTGTCCAATGTATAAAGAACAGTGAGAAGTCAAAgtaagtgccagttgtgtcatagaatctgctgttctgagtactttctagga Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgttttggaaagaaagtctctgcagcactaggactgatgttgccttgcagGTTGTCGCCGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCTTGTTGACCTTGGGAATGTGTGTCCAATGTATAAAGAACAGTGAGAAGTCAAAgtaagtgccagttgtgtcatagaatctgctgttctgagtactttctagga Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgttttggaaagaaagtctctgcagcactaggactgatgttgccttgcagGTTGTCGCCGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCTTGTTGACCTTGGGAATGTGTGTCCAATGTATAAAGAACAGTGAGAAGTCAAAgtaagtgccagttgtgtcatagaatctgctgttctgagtactttctagga Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgttttggaaagaaagtctctgcagcactaggactgatgttgccttgcagGTTGTCGCCGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCTTGTTGACCTTGGGAATGTGTGTCCAATGTATAAAGAACAGTGAGAAGTCAAAgtaagtgccagttgtgtcatagaatctgctgttctgagtactttctagga #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTT---CATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTC-AAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGT---GACATAGAACTTGAAACTGAA tggtgtttttgactaagtcctctattagtctaaactatcctcctcttcagaGAAACAGTTATTATTCATCAGCAGGAAATATTGGGAGAAAATACCGAACGGTGTGTGTGTATTTTTCGAAG-CCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGGgtgagtattacattgacatgcaactacactctctgacgtggcccccttgt Alignment from CESAR gGAGACA---CTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tggtgtttttgactaagtcctctattagtctaaactatcctcctcttcagaGAAACAGTTATTATTCATCAGCAGGAAATATTGGGAGAAAATACCGAACGGTGTGTGTGTATTTTTCGAAGCCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGGgtgagtattacattgacatgcaactacactctctgacgtggcccccttgt Alignment from Spaln_aa2Genome GGAGACA---CTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tggtgtttttgactaagtcctctattagtctaaactatcctcctcttcagAGAAACAGTTATTATTCATCAGCAGGAAATATTGGGAGAAAATACCGAACGGTGTGTGTGTATTTTTCGAAGCCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGGgtgagtattacattgacatgcaactacactctctgacgtggcccccttgt Alignment from Spaln_nt2Genome GGAGACACTTCTT---CATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTG-GCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTG---TGACATAGAACTTGAAACTGAA tggtgtttttgactaagtcctctattagtctaaactatcctcctcttcagAGAAACAGTTATTATTCATCAGCAGGAAATATTGGGAGAAAATACCGAACGGTGTGTGTGTATTTTTCGAAG-CCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGGgtgagtattacattgacatgcaactacactctctgacgtggcccccttgt Alignment from Pairagon GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tggtgtttttgactaagtcctctattagtctaaactatcctcctcttcagagaaacagttattattcatcagcaggaaatattgggagaaaataccgaacggtgtgtgtgtatttttcgaagcctggcagGG-----------------------------------------------------------------------------AAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGGgtgagtattacattgacatgcaactacactctctgacgtggcccccttgt Alignment from Exonerate_protein2genome GGAGACA---CTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGA---ATTTGTGACATAGAACTTGAAACTGAA tggtgtttttgactaagtcctctattagtctaaactatcctcctcttcagAGAAACAGTTATTATTCATCAGCAGGAAATATTGGGAGAAAATACCGAACGGTGTGTGTGTATTTTTCGAAGCCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGGgtgagtattacattgacatgcaactacactctctgacgtggcccccttgt Alignment from Exonerate_coding2genome GGAGACA---CTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGA---ATTTGTGACATAGAACTTGAAACTGAA tggtgtttttgactaagtcctctattagtctaaactatcctcctcttcagAGAAACAGTTATTATTCATCAGCAGGAAATATTGGGAGAAAATACCGAACGGTGTGTGTGTATTTTTCGAAGCCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGGgtgagtattacattgacatgcaactacactctctgacgtggcccccttgt Alignment from GeneWise GGAGACA---CTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGT---GACATAGAACTTGAAACTGAA tggtgtttttgactaagtcctctattagtctaaactatcctcctcttcagAGAAACAGTTATTATTCATCAGCAGGAAATATTGGGAGAAAATACCGAACGGTGTGTGTGTATTTTTCGAAGCCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGGgtgagtattacattgacatgcaactacactctctgacgtggcccccttgt #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAA-GATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tcttgtgtatatttttgcagggcctaacgtatcattatgtttctgtgcagGGCCTAGACCCTGCCAGTCAGACAAAGGTCATCAAGCTATTAAAGCGATGGTA-CAGTGGACACAGCCAATGCCGTGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGATTTGGAAGAGTCAGAGCCAATGGCTCACTGGGGTGGTgtaggagcataaccaatctcttttgagcctgctcctgcttttcccacctc Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tcttgtgtatatttttgcagggcctaacgtatcattatgtttctgtgcagGGCCTAGACCCTGCCAGTCAGACAAAGGTCATCAAGCTATTAAAGCGATGGTACAGTGGACACAGCCAATGCCGTGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGATTTGGAAGAGTCAGAGCCAATGGCTCACTGGGGTGGTgtaggagcataaccaatctcttttgagcctgctggctcccttcctcttca Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tcttgtgtatatttttgcagggcctaacgtatcattatgtttctgtgcagGGCCTAGACCCTGCCAGTCAGACAAAGGTCATCAAGCTATTAAAGCGATGGTACAGTGGACACAGCCAATGCCGTGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGATTTGGAAGAGTCAGAGCCAATGGCTCACTGGGGTGGTgtaggagcataaccaatctcttttgagcctgctcctgcttttcccacctc Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAA-GATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tcttgtgtatatttttgcagggcctaacgtatcattatgtttctgtgcagGGCCTAGACCCTGCCAGTCAGACAAAGGTCATCAAGCTATTAAAGCGATGGTA-CAGTGGACACAGCCAATGCCGTGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGATTTGGAAGAGTCAGAGCCAATGGCTCACTGGGGTGGTgtaggagcataaccaatctcttttgagcctgctcctgcttttcccacctc Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGG--------------------TGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tcttgtgtatatttttgcagggcctaacgtatcattatgtttctgtgcagGGCCTAGACCCTGCCAGTCAGACAAAGGTCATCAAGCTATTAAAGCGATGGTACA--------------------GTGGACACAGCCAATGCCGTGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGATTTGGAAGAGTCAGAGCCAATGGCTCACTGGGGTGGTgtaggagcataaccaatctcttttgagcctgctcctgcttttcccacctc Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tcttgtgtatatttttgcagggcctaacgtatcattatgtttctgtgcagGGCCTAGACCCTGCCAGTCAGACAAAGGTCATCAAGCTATTAAAGCGATGGTACAGTGGACACAGCCAATGCCGTGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGATTTGGAAGAGTCAGAGCCAATGGCTCACTGGGGTGGTgtaggagcataaccaatctcttttgagcctgctcctgcttttcccacctc Alignment from Exonerate_coding2genome tcttgtgtatatttttgcagggcctaacgtatcattatgtttctgtgcagggcctagaccctgccagtcagacaaaggtcatcaagctattaaagcgatggtacagtggacacagccaatgccgtggtagtagagatgtgattgggcctcctgaactagatttggaagagtcagagccaatggctcactggggtggtgtaggagcataaccaatctcttttgagcctgctcctgcttttcccacctc Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tcttgtgtatatttttgcagggcctaacgtatcattatgtttctgtgcagGGCCTAGACCCTGCCAGTCAGACAAAGGTCATCAAGCTATTAAAGCGATGGTACAGTGGACACAGCCAATGCCGTGGTAGTAGAGATGTGATTGGGCCTCCT---GAACTAGATTTGGAAGAGTCAGAGCCAATGGCTCACTGGGGTGGTgtaggagcataaccaatctcttttgagcctgctcctgcttttcccacctc #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGC-CAGGGCAAGCTGGAAGCCGCA---CACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG taccactatcaggccaaattacttttcactgttccctgtgctttctgtagtCCTACAGTCAATACCAGATTGCGAAGCTGGGGTACGCTGTACTGGCATCGAAGGCAAAC-GGATGCTACACAACACACACTGAAAGACTGTTCAAGCCATAGTTGCAAACAGgtaggtctttcatccctggggataaatagggccacattcttgtgtatatt Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCA---CACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG taccactatcaggccaaattacttttcactgttccctgtgctttctgtagtCCTACAGTCAATACCAGATTGCGAAGCTGGGGTACGCTGTACTGGCATCGAAGGCAAACGGATGCTACACAACACACACTGAAAGACTGTTCAAGCCATAGTTGCAAACAGgtaggtctttcatccctggggataaatagggccacattcttgtgtatatt Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCA---CACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG taccactatcaggccaaattacttttcactgttccctgtgctttctgtagTCCTACAGTCAATACCAGATTGCGAAGCTGGGGTACGCTGTACTGGCATCGAAGGCAAACGGATGCTACACAACACACACTGAAAGACTGTTCAAGCCATAGTTGCAAACAGgtaggtctttcatccctggggataaatagggccacattcttgtgtatatt Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCC-AGGGCAAGCTGGAAGCCGCACA---CACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG taccactatcaggccaaattacttttcactgttccctgtgctttctgtagTCCTACAGTCAATACCAGATTGCGAAGCTGGGGTACGCTGTACTGGCATCGAAGGCAAAC-GGATGCTACACAACACACACTGAAAGACTGTTCAAGCCATAGTTGCAAACAGgtaggtctttcatccctggggataaatagggccacattcttgtgtatatt Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGC-------------------------ACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG taccactatcaggccaaattacttttcactgttccctgtgctttctgtagTCCTACAGTCAATACCAGATTGCGAAGCTGGGGTACGCTGTACTG----------------------GCATCGAAGGCAAACGGATGCTACACAACACACACTGAAAGACTGTTCAAGCCATAGTTGCAAACAGgtaggtctttcatccctggggataaatagggccacattcttgtgtatatt Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCA---CACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG taccactatcaggccaaattacttttcactgttccctgtgctttctgtagTCCTACAGTCAATACCAGATTGCGAAGCTGGGGTACGCTGTACTGGCATCGAAGGCAAACGGATGCTACACAACACACACTGAAAGACTGTTCAAGCCATAGTTGCAAACAGgtaggtctttcatccctggggataaatagggccacattcttgtgtatatt Alignment from Exonerate_coding2genome taccactatcaggccaaattacttttcactgttccctgtgctttctgtagtcctacagtcaataccagattgcgaagctggggtacgctgtactggcatcgaaggcaaacggatgctacacaacacacactgaaagactgttcaagccatagttgcaaacaggtaggtctttcatccctggggataaatagggccacattcttgtgtatatt Alignment from GeneWise ------------------------------GTTGACAGTCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCA---CACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG taccactatcagGCCAAATTACTTTTCACTGTTCCCTGTGCTTTCTGTAGTCCTACAGTCAATACCAGATTGCGAAGCTGGGGTACGCTGTACTGGCATCGAAGGCAAACGGATGCTACACAACACACACTGAAAGACTGTTCAAGCCATAGTTGCAAACAGgtaggtctttcatccctggggataaatagggccacattcttgtgtatatt #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAAC-AATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagtggccatgaagagaggtactcactgcctctctgcctgcagGTA------GCCCTTAATCAATCTGGCGG-GCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGATCACTGGAGATCCAAGAGAAGgtcagtgtgggcataatagtgccacatgaatgccatacagcaccatgact Alignment from CESAR GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagtggccatgaagagaggtactcactgcctctctgcctgcagGTAGCC------CTTAATCAATCTGGCGGGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGATCACTGGAGATCCAAGAGAAGgtcagtgtgggcataatagtgccacatgaatgccatacagcaccatgact Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagtggccatgaagagaggtactcactgcctctctgcctgcagGTAGCC------CTTAATCAATCTGGCGGGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGATCACTGGAGATCCAAGAGAAGgtcagtgtgggcataatagtgccacatgaatgccatacagcaccatgact Alignment from Spaln_nt2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagtggccatgaagagaggtactcactgcctctctgcctgcagGTAGC-----CCTTAATCAATCTGGC-GGGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGATCACTGGAGATCCAAGAGAAGgtcagtgtgggcataatagtgccacatgaatgccatacagcaccatgact Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagtggccatgaagagaggtactcactgcctctctgcctgcagGTAGC-----CCTTAATCAATCTGGC-GGGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGATCACTGGAGATCCAAGAGAAGgtcagtgtgggcataatagtgccacatgaatgccatacagcaccatgact Alignment from Exonerate_protein2genome GCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagtggccatgaagagaggtactcactgcctctctgcctgcagGTAGCCCTTAATCAATCTGGCGGGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGATCACTGGAGATCCAAGAGAAGgtcagtgtgggcataatagtgccacatgaatgccatacagcaccatgact Alignment from Exonerate_coding2genome GCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagtggccatgaagagaggtactcactgcctctctgcctgcagGTAGCCCTTAATCAATCTGGCGGGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGATCACTGGAGATCCAAGAGAAGgtcagtgtgggcataatagtgccacatgaatgccatacagcaccatgact Alignment from GeneWise --CTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agtccttcagtggccatgaagagaggtactcactgcctctctgcctgcaggtagCCCTTAATCAATCTGGCGGGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGATCACTGGAGATCCAAGAGAAGgtcagtgtgggcataatagtgccacatgaatgccatacagcaccatgact #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTC-TTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg ttacaggccaatccaaacactgatttagcttcctgtgattgatttttcagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCCTTCCAGAGGT-GCAGCGAATGGTTGCGCCTCCTggtaaggttccctctaattgagtgaagtagttctgcaacagttgagccttt Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg ttacaggccaatccaaacactgatttagcttcctgtgattgatttttcagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCCTTCCAGAGGTGCAGCGAATGGTTGCGCCTCCTggtaaggttccctctaattgagtgaagtagttctgcaacagttgagccttt Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ttacaggccaatccaaacactgatttagcttcctgtgattgatttttcagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCCTTCCAGAGGTGCAGCGAATGGTTGCGCCTCCTGgtaaggttccctctaattgagtgaagtagttctgcaacagttgagccttt Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ttacaggccaatccaaacactgatttagcttcctgtgattgatttttcagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCCTTCCAGAGGTGCAGCGAATGGTTGCGCCTCCTGgtaaggttccctctaattgagtgaagtagttctgcaacagttgagccttt Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCT-CTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ttacaggccaatccaaacactgatttagcttcctgtgattgatttttcagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCCTTCCAGAGGT-GCAGCGAATGGTTGCGCCTCCTGgtaaggttccctctaattgagtgaagtagttctgcaacagttgagccttt Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ttacaggccaatccaaacactgatttagcttcctgtgattgatttttcagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCCTTCCAGAGGTGCAGCGAATGGTTGCGCCTCCTGgtaaggttccctctaattgagtgaagtagttctgcaacagttgagccttt Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ttacaggccaatccaaacactgatttagcttcctgtgattgatttttcagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCCTTCCAGAGGTGCAGCGAATGGTTGCGCCTCCTGgtaaggttccctctaattgagtgaagtagttctgcaacagttgagccttt Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ttacaggccaatccaaacactgatttagcttcctgtgattgatttttcagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCCTTCCAGAGGTGCAGCGAATGGTTGCGCCTCCTGgtaaggttccctctaattgagtgaagtagttctgcaacagttgagccttt #### Ldb1_ID9694_6 --> 2 - 0 Original Alignment ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATG-GTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCC-GCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from CESAR ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Spaln_aa2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Spaln_nt2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Pairagon CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATG-GTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCC-GCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Exonerate_protein2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Exonerate_coding2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from GeneWise ----------------------------------------------------ATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG GGCTCTGGGTGAGATGCTTTCTCTCTTTACCAAGGTGCCTTGTCCCCTAGCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTG-ACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgatgggggtgtgcctttcactcttctacatcctttagGAATGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCCACTTTAA-CTTTTGTTTGAAGGATGGGCCAAACAGGTACagtgagttggctctgggtgagatgctttctctctttgatggcacatgttcc Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgatgggggtgtgcctttcactcttctacatcctttagGAATGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCCACTTTAACTTTTGTTTGAAGGATGGGCCAAACAGGTACagtgagttggctctgggtgagatgctttctctctttaccaaggtgccttgt Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgcctttcactcttctacatcctttagGAATGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCCACTTTAACTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgagttggctctgggtgagatgctttctctctttgatggcacatgttcc Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgcctttcactcttctacatcctttagGAATGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCCACTTTAACTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgagttggctctgggtgagatgctttctctctttgatggcacatgttcc Alignment from Pairagon GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgcctttcactcttctacatcctttagGAATGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCCACTTTAACTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgagttggctctgggtgagatgctttctctctttgatggcacatgttcc Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgcctttcactcttctacatcctttagGAATGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCCACTTTAACTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgagttggctctgggtgagatgctttctctctttgatggcacatgttcc Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgcctttcactcttctacatcctttagGAATGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCCACTTTAACTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgagttggctctgggtgagatgctttctctctttgatggcacatgttcc Alignment from GeneWise GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATACC------------------------------------------------ aggatgagaggttgatgggggtgtgcctttcactcttctacatcctttagGAATGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCCACTTTAACTTTTGTTTGAAGGATGGGCCAAACAGGTACAGTGAGTTGGCTCTGGGTGAGATGCTTTCTCTCTTTGATGGCACATGTTCC #### Lipf_ID6846_2 --> 0 - 1 Original Alignment AGTCAGATGATAACTTACTGGGGATATCCAAGT-GAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg gtccactcaatcacactactatttttctctcccactgtcttgtcttgcagAGTCAAATTGTAACTTATTGGGGATATCCAAGTCGAAG-ATATGAAGGGGCGTCTGAAGATGGATATATTCTGGGGATCTATAGAATTCCATATAGCAAAAGGAACTCCGAAAACATAggtgataatatcctgtgaatgggaagaaaaatcttgagcaagtcaatccac Alignment from CESAR AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg gtccactcaatcacactactatttttctctcccactgtcttgtcttgcagAGTCAAATTGTAACTTATTGGGGATATCCAAGTCGAAGATATGAAGGGGCGTCTGAAGATGGATATATTCTGGGGATCTATAGAATTCCATATAGCAAAAGGAACTCCGAAAACATAggtgataatatcctgtgaatgggaagaaaaatcttgagcaagtcaatccac Alignment from Spaln_aa2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactcaatcacactactatttttctctcccactgtcttgtcttgcagAGTCAAATTGTAACTTATTGGGGATATCCAAGTCGAAGATATGAAGGGGCGTCTGAAGATGGATATATTCTGGGGATCTATAGAATTCCATATAGCAAAAGGAACTCCGAAAACATAGgtgataatatcctgtgaatgggaagaaaaatcttgagcaagtcaatccac Alignment from Spaln_nt2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTT--------------------------------------------ATGGGAAGAAAAATTCTGAG-AA gtccactcaatcacactactatttttctctcccactgtcttgtcttgcagAGTCAAATTGTAACTTATTGGGGATATCCAAGTCGAAGATATGAAGGGGCGTCTGAAGATGGATATATTCTGGGGATCTATAGAATTCCATATAGCAAAAGGAACTCCGAAAACATAGGTGATAATATCCTGTGAATGGGAAGAAAAATCTTGAGCAAgtcaatccac Alignment from Pairagon AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTT--------------------------------------------ATGGGAAGAAAAATTCTGA gtccactcaatcacactactatttttctctcccactgtcttgtcttgcagAGTCAAATTGTAACTTATTGGGGATATCCAAGTCGAAGATATGAAGGGGCGTCTGAAGATGGATATATTCTGGGGATCTATAGAATTCCATATAGCAAAAGGAACTCCGAAAACATAGGTGATAATATCCTGTGAATGGGAAGAAAAATCTTGAgcaagtcaatccac Alignment from Exonerate_protein2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactcaatcacactactatttttctctcccactgtcttgtcttgcagAGTCAAATTGTAACTTATTGGGGATATCCAAGTCGAAGATATGAAGGGGCGTCTGAAGATGGATATATTCTGGGGATCTATAGAATTCCATATAGCAAAAGGAACTCCGAAAACATAGgtgataatatcctgtgaatgggaagaaaaatcttgagcaagtcaatccac Alignment from Exonerate_coding2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactcaatcacactactatttttctctcccactgtcttgtcttgcagAGTCAAATTGTAACTTATTGGGGATATCCAAGTCGAAGATATGAAGGGGCGTCTGAAGATGGATATATTCTGGGGATCTATAGAATTCCATATAGCAAAAGGAACTCCGAAAACATAGgtgataatatcctgtgaatgggaagaaaaatcttgagcaagtcaatccac Alignment from GeneWise AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactcaatcacactactatttttctctcccactgtcttgtcttgcagAGTCAAATTGTAACTTATTGGGGATATCCAAGTCGAAGATATGAAGGGGCGTCTGAAGATGGATATATTCTGGGGATCTATAGAATTCCATATAGCAAAAGGAACTCCGAAAACATAGgtgataatatcctgtgaatgggaagaaaaatcttgagcaagtcaatccac #### Ltbp3_ID1253_5 --> 2 - 1 Original Alignment atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTG-GGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg taccgagctcactctcttttttcactatcttatgcccatgtgtcttacagatACAGGAGTGCAAAAGCCTGGACCTGTTCGAGGG---GTGCGGCACTG-CTGCCCCAAAGGCTATAAAAGACTTAATAGCACCCATTCCCAGggttaatatcaccaatcaccaaaggttccattaattgtgatgtgaggaagg Alignment from CESAR atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg taccgagctcactctcttttttcactatcttatgcccatgtgtcttacagatACAGGAGTGCAAAAGCCTGGACCTGTTCGAGGG---GTGCGGCACTGCTGCCCCAAAGGCTATAAAAGACTTAATAGCACCCATTCCCAGggttaatatcaccaatcaccaaaggttccattaattgtgatgtgaggaagg Alignment from Spaln_aa2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccgagctcactctcttttttcactatcttatgcccatgtgtcttacagATACAGGAGTGCAAAAGCCTGGACCTGTTCGAGGG---GTGCGGCACTGCTGCCCCAAAGGCTATAAAAGACTTAATAGCACCCATTCCCAGGgttaatatcaccaatcaccaaaggttccattaattgtgatgtgaggaagg Alignment from Spaln_nt2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccgagctcactctcttttttcactatcttatgcccatgtgtcttacagATACAGGAGTGCAAAAGCCTGGACCTGTTCGAGGGGTG--CGGCACTG-CTGCCCCAAAGGCTATAAAAGACTTAATAGCACCCATTCCCAGGgttaatatcaccaatcaccaaaggttccattaattgtgatgtgaggaagg Alignment from Pairagon ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTG----ACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccgagctcactctcttttttcactatcttatgcccatgtgtcttacagATACAGGAGTGCAAAAGCCTGGACCTGTTCGAG-------GGGTGCGGCACTGCTGCCCCAAAGGCTATAAAAGACTTAATAGCACCCATTCCCAGGgttaatatcaccaatcaccaaaggttccattaattgtgatgtgaggaagg Alignment from Exonerate_protein2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccgagctcactctcttttttcactatcttatgcccatgtgtcttacagATACAGGAGTGCAAAAGCCTGGACCTGTTCGAGGG---GTGCGGCACTGCTGCCCCAAAGGCTATAAAAGACTTAATAGCACCCATTCCCAGGgttaatatcaccaatcaccaaaggttccattaattgtgatgtgaggaagg Alignment from Exonerate_coding2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccgagctcactctcttttttcactatcttatgcccatgtgtcttacagATACAGGAGTGCAAAAGCCTGGACCTGTTCGAGGG---GTGCGGCACTGCTGCCCCAAAGGCTATAAAAGACTTAATAGCACCCATTCCCAGGgttaatatcaccaatcaccaaaggttccattaattgtgatgtgaggaagg Alignment from GeneWise ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccgagctcactctcttttttcactatcttatgcccatgtgtcttacagATACAGGAGTGCAAAAGCCTGGACCTGTTCGAGGG---GTGCGGCACTGCTGCCCCAAAGGCTATAAAAGACTTAATAGCACCCATTCCCAGGgttaatatcaccaatcaccaaaggttccattaattgtgatgtgaggaagg #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGC-TGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg attgaatcagcattgattgtctcaagtgctaaacctgtacctctgtatagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTATCATCTGTGTCT-CCCACCTGGTCATAGTTTAGGTCCTTTCCGCAAACAGTGTATAggtgagttcaagaacaagtttggattgactaaaggggagcagatgggtggt Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGC---TGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg attgaatcagcattgattgtctcaagtgctaaacctgtacctctgtatagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTATCATCTGTGTCTC---CCACCTGGTCATAGTTTAGGTCCTTTCCGCAAACAGTGTATAggtgagttcaagaacaagtttggattgactaaaggggagcagatgggtggt Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG attgaatcagcattgattgtctcaagtgctaaacctgtacctctgtatagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTATCATCTGTGTCTCCCACCTGGTCATAGTTTAGGTCCTTTCCGCAAACAGTGTATAGgtgagttcaagaacaagtttggattgactaaaggggagcagatgggtggt Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG attgaatcagcattgattgtctcaagtgctaaacctgtacctctgtatagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTATCATCTGTGTCTCCCACCTGGTCATAGTTTAGGTCCTTTCCGCAAACAGTGTATAGgtgagttcaagaacaagtttggattgactaaaggggagcagatgggtggt Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCG-CTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG attgaatcagcattgattgtctcaagtgctaaacctgtacctctgtatagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTATCATCTGTGTCT-CCCACCTGGTCATAGTTTAGGTCCTTTCCGCAAACAGTGTATAGgtgagttcaagaacaagtttggattgactaaaggggagcagatgggtggt Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG attgaatcagcattgattgtctcaagtgctaaacctgtacctctgtatagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTATCATCTGTGTCTCCCACCTGGTCATAGTTTAGGTCCTTTCCGCAAACAGTGTATAGgtgagttcaagaacaagtttggattgactaaaggggagcagatgggtggt Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG attgaatcagcattgattgtctcaagtgctaaacctgtacctctgtatagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTATCATCTGTGTCTCCCACCTGGTCATAGTTTAGGTCCTTTCCGCAAACAGTGTATAGgtgagttcaagaacaagtttggattgactaaaggggagcagatgggtggt Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG attgaatcagcattgattgtctcaagtgctaaacctgtacctctgtatagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTATCATCTGTGTCTCCCACCTGGTCATAGTTTAGGTCCTTTCCGCAAACAGTGTATAGgtgagttcaagaacaagtttggattgactaaaggggagcagatgggtggt #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGC-TACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatgtgactggtcaattctagacatatctaacaggcctgttcccctgcagatGTGACTGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACTACTGGTGGATCATATAATTGTCATTGCAACCGGGGCCTACCGCC-TCATGTAGGTGCAGGGGGCCGACTCTGTGTGggtgagtatacttgggtagcacacacctgtgtgcatttctgacaccagacc Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatgtgactggtcaattctagacatatctaacaggcctgttcccctgcagatGTGACTGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACTACTGGTGGATCATATAATTGTCATTGCAACCGGGGCCTACCGCCTCATGTAGGTGCAGGGGGCCGACTCTGTGTGggtgagtatacttgggtagcacacacctgtgtgcatttctgacaccagacc Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatgtgactggtcaattctagacatatctaacaggcctgttcccctgcagATGTGACTGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACTACTGGTGGATCATATAATTGTCATTGCAACCGGGGCCTACCGCCTCATGTAGGTGCAGGGGGCCGACTCTGTGTGGgtgagtatacttgggtagcacacacctgtgtgcatttctgacaccagacc Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatgtgactggtcaattctagacatatctaacaggcctgttcccctgcagATGTGACTGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACTACTGGTGGATCATATAATTGTCATTGCAACCGGGGCCTACCGCCTCATGTAGGTGCAGGGGGCCGACTCTGTGTGGgtgagtatacttgggtagcacacacctgtgtgcatttctgacaccagacc Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGG-CTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatgtgactggtcaattctagacatatctaacaggcctgttcccctgcagATGTGACTGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACTACTGGTGGATCATATAATTGTCATTGCAACCGGGGCCTACCGCCT-CATGTAGGTGCAGGGGGCCGACTCTGTGTGGgtgagtatacttgggtagcacacacctgtgtgcatttctgacaccagacc Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatgtgactggtcaattctagacatatctaacaggcctgttcccctgcagATGTGACTGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACTACTGGTGGATCATATAATTGTCATTGCAACCGGGGCCTACCGCCTCATGTAGGTGCAGGGGGCCGACTCTGTGTGGgtgagtatacttgggtagcacacacctgtgtgcatttctgacaccagacc Alignment from Exonerate_coding2genome gatgtgactggtcaattctagacatatctaacaggcctgttcccctgcagatgtgactgggtgtggggctgagccctgtggccctggaaaaggtatctgtatgactactggtggatcatataattgtcattgcaaccggggcctaccgcctcatgtaggtgcagggggccgactctgtgtgggtgagtatacttgggtagcacacacctgtgtgcatttctgacaccagacc Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatgtgactggtcaattctagacatatctaacaggcctgttcccctgcagATGTGACTGGGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACTACTGGTGGATCATATAATTGTCATTGCAACCGGGGCCTACCGCCTCATGTAGGTGCAGGGGGCCGACTCTGTGTGGgtgagtatacttgggtagcacacacctgtgtgcatttctgacaccagacc #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAG-TGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccatacttgtatcggaccatcctcactcaatgtgtgtcactgcagatATTGATGAATGTCATGATCCTAGCACTTGCCCAGATGGGAAGTGTGAAAATAAACTTGGGAGCTTCAGGCTGCATTG-TTGCCAGCCTGGTTACCGAAGCCAGGGAGGGGGGACATGCCATggtaagccaaagccagcctctcccatagggtttgtagggtcgcctgatgga Alignment from CESAR acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccatacttgtatcggaccatcctcactcaatgtgtgtcactgcagatATTGATGAATGTCATGATCCTAGCACTTGCCCAGATGGGAAGTGTGAAAATAAACTTGGGAGCTTCAGGCTGCATTGTTGCCAGCCTGGTTACCGAAGCCAGGGAGGGGGGACATGCCATggtaagccaaagccagcctctcccatagggtttgtagggtcgcctgatgga Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgtatcggaccatcctcactcaatgtgtgtcactgcagATATTGATGAATGTCATGATCCTAGCACTTGCCCAGATGGGAAGTGTGAAAATAAACTTGGGAGCTTCAGGCTGCATTGTTGCCAGCCTGGTTACCGAAGCCAGGGAGGGGGGACATGCCATGgtaagccaaagccagcctctcccatagggtttgtagggtcgcctgatgga Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgtatcggaccatcctcactcaatgtgtgtcactgcagATATTGATGAATGTCATGATCCTAGCACTTGCCCAGATGGGAAGTGTGAAAATAAACTTGGGAGCTTCAGGCTGCATTGTTGCCAGCCTGGTTACCGAAGCCAGGGAGGGGGGACATGCCATGgtaagccaaagccagcctctcccatagggtttgtagggtcgcctgatgga Alignment from Pairagon ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAG-TGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgtatcggaccatcctcactcaatgtgtgtcactgcagATATTGATGAATGTCATGATCCTAGCACTTGCCCAGATGGGAAGTGTGAAAATAAACTTGGGAGCTTCAGGCTGCATTG-TTGCCAGCCTGGTTACCGAAGCCAGGGAGGGGGGACATGCCATGgtaagccaaagccagcctctcccatagggtttgtagggtcgcctgatgga Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgtatcggaccatcctcactcaatgtgtgtcactgcagATATTGATGAATGTCATGATCCTAGCACTTGCCCAGATGGGAAGTGTGAAAATAAACTTGGGAGCTTCAGGCTGCATTGTTGCCAGCCTGGTTACCGAAGCCAGGGAGGGGGGACATGCCATGgtaagccaaagccagcctctcccatagggtttgtagggtcgcctgatgga Alignment from Exonerate_coding2genome tggcaccatacttgtatcggaccatcctcactcaatgtgtgtcactgcagatattgatgaatgtcatgatcctagcacttgcccagatgggaagtgtgaaaataaacttgggagcttcaggctgcattgttgccagcctggttaccgaagccagggaggggggacatgccatggtaagccaaagccagcctctcccatagggtttgtagggtcgcctgatgga Alignment from GeneWise ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgtatcggaccatcctcactcaatgtgtgtcactgcagATATTGATGAATGTCATGATCCTAGCACTTGCCCAGATGGGAAGTGTGAAAATAAACTTGGGAGCTTCAGGCTGCATTGTTGCCAGCCTGGTTACCGAAGCCAGGGAGGGGGGACATGCCATGgtaagccaaagccagcctctcccatagggtttgtagggtcgcctgatgga #### Ltbp3_ID1268_20 --> 2 - 1 Original Alignment agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGAC-ACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg gctatagcttagcagatattaattggaaaattgtaatgattttgatccagagGTGGAGCAGCCTCACCATAAGAAGGAATGCTACCTTAACTTTGATGACCACAGTGTTCT-TGACAGCATACTAGCTACTAATGTTACTCAACAGGAATGCTGCTGCTCTCTGGGAGCGGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCTATCTTCAGCTCAggtgggtcaatgggctgaatcttggtcctatcaaacaggcctgtgaattct Alignment from CESAR agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg gctatagcttagcagatattaattggaaaattgtaatgattttgatccagagGTGGAGCAGCCTCACCATAAGAAGGAATGCTACCTTAACTTTGATGACCACAGTGTTCTTGACAGCATACTAGCTACTAATGTTACTCAACAGGAATGCTGCTGCTCTCTGGGAGCGGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCTATCTTCAGCTCAggtgggtcaatgggctgaatcttggtcctatcaaacaggcctgtgaattct Alignment from Spaln_aa2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gctatagcttagcagatattaattggaaaattgtaatgattttgatccagAGGTGGAGCAGCCTCACCATAAGAAGGAATGCTACCTTAACTTTGATGACCACAGTGTTCTTGACAGCATACTAGCTACTAATGTTACTCAACAGGAATGCTGCTGCTCTCTGGGAGCGGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCTATCTTCAGCTCAGgtgggtcaatgggctgaatcttggtcctatcaaacaggcctgtgaattct Alignment from Spaln_nt2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGAC-ACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gctatagcttagcagatattaattggaaaattgtaatgattttgatccagAGGTGGAGCAGCCTCACCATAAGAAGGAATGCTACCTTAACTTTGATGACCACAGTGTTCT-TGACAGCATACTAGCTACTAATGTTACTCAACAGGAATGCTGCTGCTCTCTGGGAGCGGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCTATCTTCAGCTCAGgtgggtcaatgggctgaatcttggtcctatcaaacaggcctgtgaattct Alignment from Pairagon AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGA-CACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gctatagcttagcagatattaattggaaaattgtaatgattttgatccagAGGTGGAGCAGCCTCACCATAAGAAGGAATGCTACCTTAACTTTGATGACCACAGTGTTCT-TGACAGCATACTAGCTACTAATGTTACTCAACAGGAATGCTGCTGCTCTCTGGGAGCGGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCTATCTTCAGCTCAGgtgggtcaatgggctgaatcttggtcctatcaaacaggcctgtgaattct Alignment from Exonerate_protein2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gctatagcttagcagatattaattggaaaattgtaatgattttgatccagAGGTGGAGCAGCCTCACCATAAGAAGGAATGCTACCTTAACTTTGATGACCACAGTGTTCTTGACAGCATACTAGCTACTAATGTTACTCAACAGGAATGCTGCTGCTCTCTGGGAGCGGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCTATCTTCAGCTCAGgtgggtcaatgggctgaatcttggtcctatcaaacaggcctgtgaattct Alignment from Exonerate_coding2genome gctatagcttagcagatattaattggaaaattgtaatgattttgatccagaggtggagcagcctcaccataagaaggaatgctaccttaactttgatgaccacagtgttcttgacagcatactagctactaatgttactcaacaggaatgctgctgctctctgggagcgggatggggagaccactgtgaaatctatccctgtcctatcttcagctcaggtgggtcaatgggctgaatcttggtcctatcaaacaggcctgtgaattct Alignment from GeneWise AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG gctatagcttagcagatattaattggaaaattgtaatgattttgatccagAGGTGGAGCAGCCTCACCATAAGAAGGAATGCTACCTTAACTTTGATGACCACAGTGTTCTTGACAGCATACTAGCTACTAATGTTACTCAACAGGAATGCTGCTGCTCTCTGGGAGCGGGATGGGGAGACCACTGTGAAATCTATCCCTGTCCTATCTTCAGCTCAGgtgggtcaatgggctgaatcttggtcctatcaaacaggcctgtgaattct #### Ltbp3_ID1273_25 --> 2 - 1 Original Alignment ACGTGGCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCC-CTGCTACTGGGGAAGTCTCCGCGAg ACGTGGTACTggtaagaatttttgaaggcccaacaccctgtgtcctgcagggTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCACGTGCTAC-AGGG---------CGAggtaaggcaaggctggtgattgtatgcaaagtctatgataggccacccagt Alignment from CESAR ACGTGGCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg ACGTGGTACTggtaagtatttttgaaggcccaacaccctgtgtcctgcagggTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCACGTGCTACAGGG---------CGAggtaaggcaaggctggtgattgtatgcaaagtctatgataggctctcttcc Alignment from Spaln_aa2Genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtaagaatttttgaaggcccaacaccctgtgtcctgcagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCACGTGCTACAGGG---------CGAGgtaaggcaaggctggtgattgtatgcaaagtctatgataggccacccagt Alignment from Spaln_nt2Genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGA-GC--AATTCATTCTGGGACACAAGCCCCC-TGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtaagaatttttgaaggcccaacaccctgtgtcctgcagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCACGTGCTACAGGGCGAGGTAAGGCAAGgctggtgattgtatgcaaagtctatgataggccacccagt Alignment from Pairagon ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGA---GCAATTCATTCTGGGACACAAGCCC-CCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtaagaatttttgaaggcccaacaccctgtgtcctgcagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCACGTGCTACAGG----------GCGAGgtaaggcaaggctggtgattgtatgcaaagtctatgataggccacccagt Alignment from Exonerate_protein2genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtaagaatttttgaaggcccaacaccctgtgtcctgcagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCACGTGCTACAGGGCGAGGTAAGGCAAggctggtgattgtatgcaaagtctatgataggccacccagt Alignment from Exonerate_coding2genome acgtggtactggtaagaatttttgaaggcccaacaccctgtgtcctgcagggtcccagtgctccactttacagggtgagatgcttaactcattttgggatactaccccacgtgctacagggcgaggtaaggcaaggctggtgattgtatgcaaagtctatgataggccacccagt Alignment from GeneWise ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAG- - ACGTGGTACTGgtaagaatttttgaaggcccaacaccctgtgtcctgcagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCACGTGCTACAGGGCGAGgtaaggcaaggctggtgattgtatgcaaagtctatgataggccacccagT #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGAC-GCCTCCCGTGCCCGCTGCGTGg gtgattgtatgcaaagtctatgataggctctcttcctcttttgccagcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGCTTTCCATTGGATCGCCTCCC-TGCCCGACGAGTAggtaagtatgacatcagggggcagatgggggtggaagacatcatgaaccta Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg gtgattgtatgcaaagtctatgataggctctcttcctcttttgccagcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGCTTTCCATTGGATCGCCTCCCTGCCCGACGAGTAggtaagtatgacatcagggggcagatgggggtggaagacatcatgaaccta Alignment from Spaln_aa2Genome CTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtatgcaaagtctatgataggctctcttcctcttttgccagCA------GATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGCTTTCCATTGGATCGCCTCCCTGCCCGACGAGTAGgtaagtatgacatcagggggcagatgggggtggaagacatcatgaaccta Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGA-CGCCTCCCGTGCCCGCTGCGTGG gtgattgtatgcaaagtctatgataggctctcttcctcttttgccagcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGCTTTCCATTGGATCGCCTCCC-TGCCCGACGAGTAGgtaagtatgacatcagggggcagatgggggtggaagacatcatgaaccta Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGA-CGCCTCCCGTGCCCGCTGCGTGG gtgattgtatgcaaagtctatgataggctctcttcctcttttgccagcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGCTTTCCATTGGATCGCCTCCC-TGCCCGACGAGTAGgtaagtatgacatcagggggcagatgggggtggaagacatcatgaaccta Alignment from Exonerate_protein2genome CTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtgattgtatgcaaagtctatgataggctctcttcctctttTGCCAGCAGATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGCTTTCCATTGGATCGCCTCCCTGCCCGACGAGTAGgtaagtatgacatcagggggcagatgggggtggaagacatcatgaaccta Alignment from Exonerate_coding2genome gtgattgtatgcaaagtctatgataggctctcttcctcttttgccagcagatgaagacagctcagaggaagattcagatgagtgccgttgtgtcattgggcactgtgccccgcgtcccggtggggctgtatgtgagtgtcctggtggctttccattggatcgcctccctgcccgacgagtaggtaagtatgacatcagggggcagatgggggtggaagacatcatgaaccta Alignment from GeneWise --------------TCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtgattgtatgcaaagtctatgatagGCTCTCTTCCTCTTTTGCCAGCAGATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGCTTTCCATTGGATCGCCTCCCTGCCCGACGAGTAGgtaagtatgacatcagggggcagatgggggtggaagacatcatgaaccta #### Macrod1_ID2052_7 --> 0 - 1 Original Alignment GCTTTCCCGTGC-ATCTCCACAGGCGTGTTTg aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCCATCT-CACAGGGGTGATTagtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from CESAR GCTTTCCCGTGCATCTCCACAGGCGTGTTTg aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCCATCTCACAGGGGTGATTagtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Spaln_aa2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCCATCTCACAGGGGTGATTAgtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Spaln_nt2Genome GCTTTCCCGTGC-ATCTCCACAGGCGTGTTTG aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCCATCT-CACAGGGGTGATTAgtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Pairagon aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagacctttccatgccatctcacaggggtgattagtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Exonerate_protein2genome aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagacctttccatgccatctcacaggggtgattagtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Exonerate_coding2genome aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagacctttccatgccatctcacaggggtgattagtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from GeneWise aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagacctttccatgccatctcacaggggtgattagtaagttgagggggccttggaacatggaataaaggaagactgagtagaat #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment CACAACTCATGGCTg acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGG-GACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG CACAACTAATGGCTggtgagttgagattgctgcttctctctctgttgcagatTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCCCTAGAAGCACAGGTGCTGCGGGAGATGCCACGACGACT-CTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGATCTGCGGGCTAAGGAAAAGgtaagctgcatctgcctatgggacatagcaaggatacataacattgagtc Alignment from CESAR CACAACTCATGGCTg acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG CACAACTAATGGCTggtaggctgagattgctgcttctctctctgttgcagatTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCCCTAGAAGCACAGGTGCTGCGGGAGATGCCACGACGACTCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGATCTGCGGGCTAAGGAAAAGgtaagctgcatctgcctatgggacatagcaaggatacataacattgagtc Alignment from Spaln_aa2Genome CACAACTCATGGCTG ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG CACAACTAATGGCTGgtgagttgagattgctgcttctctctctgttgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCCCTAGAAGCACAGGTGCTGCGGGAGATGCCACGACGACTCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGATCTGCGGGCTAAGGAAAAGgtaagctgcatctgcctatgggacatagcaaggatacataacattgagtc Alignment from Spaln_nt2Genome CACAACTCATGGCTG ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG CACAACTAATGGCTGgtgagttgagattgctgcttctctctctgttgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCCCTAGAAGCACAGGTGCTGCGGGAGATGCCACGACGACTCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGATCTGCGGGCTAAGGAAAAGgtaagctgcatctgcctatgggacatagcaaggatacataacattgagtc Alignment from Pairagon CACAACTCATGGCTG ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG CACAACTAATGGCTGgtgagttgagattgctgcttctctctctgttgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCCCTAGAAGCACAGGTGCTGCGGGAGATGCCACGACGACTCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGATCTGCGGGCTAAGGAAAAGgtaagctgcatctgcctatgggacatagcaaggatacataacattgagtc Alignment from Exonerate_protein2genome CACAACTCATGGCTG ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG CACAACTAATGGCTGgtgagttgagattgctgcttctctctctgttgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCCCTAGAAGCACAGGTGCTGCGGGAGATGCCACGACGACTCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGATCTGCGGGCTAAGGAAAAGgtaagctgcatctgcctatgggacatagcaaggatacataacattgagtc Alignment from Exonerate_coding2genome CACAACTCATGGCTG ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG CACAACTAATGGCTGgtgagttgagattgctgcttctctctctgttgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCCCTAGAAGCACAGGTGCTGCGGGAGATGCCACGACGACTCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGATCTGCGGGCTAAGGAAAAGgtaagctgcatctgcctatgggacatagcaaggatacataacattgagtc Alignment from GeneWise CACAACTCATGGCTG ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG CACAACTAATGGCTGgtgagttgagattgctgcttctctctctgttgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCCCTAGAAGCACAGGTGCTGCGGGAGATGCCACGACGACTCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGATCTGCGGGCTAAGGAAAAGgtaagctgcatctgcctatgggacatagcaaggatacataacattgagtc #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTA-CTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg tcctacatcgtgagttgatagctatattcccgcatctgctatttcttcagGAACTCCTTAGTCAAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGTTGGCACAATGGGAGCTGGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACCTCCAGC-GGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCAAATTGAGCAAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTGggtgagagctgtgactccaagcagtagcattaaggattactgctttgcaaa Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg tcctacatcgtgagttgatagctatattcccgcatctgctatttcttcagGAACTCCTTAGTCAAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGTTGGCACAATGGGAGCTGGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACCTCCAGCGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCAAATTGAGCAAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTGggtgagagctgtgactccaagcagtagcattaaggattactgctttgcaaa Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tcctacatcgtgagttgatagctatattcccgcatctgctatttcttcagGAACTCCTTAGTCAAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGTTGGCACAATGGGAGCTGGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACCTCCAGCGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCAAATTGAGCAAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTGGgtgagagctgtgactccaagcagtagcattaaggattactgctttgcaaa Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGC------GAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTAC-TGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tcctacatcgtgagttgatagctatattcccgcatctgctatttcttcagGAACTCCTTAGTCAAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGTTGGCACAATGGGAGCTGGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACCTCCAGC-GGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCAAATTGAGCAAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTGGgtgagagctgtgactccaagcagtagcattaaggattactgctttgcaaa Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGC------GACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCG-------------------------------AGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tcctacatcgtgagttgatagctatattcccgcatctgctatttcttcagGAACTCCTTAGTCAAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGTTGGCACAATGGGAGCTGGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACCTCCAGC-------------------------GGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCAAATTGAGCAAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTGGgtgagagctgtgactccaagcagtagcattaaggattactgctttgcaaa Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tcctacatcgtgagttgatagctatattcccgcatctgctatttcttcagGAACTCCTTAGTCAAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGTTGGCACAATGGGAGCTGGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACCTCCAGCGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCAAATTGAGCAAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTGGgtgagagctgtgactccaagcagtagcattaaggattactgctttgcaaa Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTG tcctacatcgtgagttgatagctatattcccgcatctgctatttcttcagGAACTCCTTAGTCAAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGTTGGCACAATGGGAGCTGGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACCTCCAGCGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCAAATTGAGCAAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTGggtgagagctgtgactccaagcagtagcattaaggattactgctttgcaaa Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tcctacatcgtgagttgatagctatattcccgcatctgctatttcttcagGAACTCCTTAGTCAAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGTTGGCACAATGGGAGCTGGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACCTCCAGCGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCAAATTGAGCAAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTGGgtgagagctgtgactccaagcagtagcattaaggattactgctttgcaaa #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAA-ATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagggGATGACATCAGCTCTCTTCAGCAGGAACATCACCATCC-CCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCaggtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagggGATGACATCAGCTCTCTTCAGCAGGAACATCACCATCCCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCaggtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagGGGATGACATCAGCTCTCTTCAGCAGGAACATCACCATCCCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCAGgtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagGGGATGACATCAGCTCTCTTCAGCAGGAACATCACCATCCCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCAGgtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAA-ATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagGGGATGACATCAGCTCTCTTCAGCAGGAACATCACCATCC-CCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCAGgtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Exonerate_protein2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagGGGATGACATCAGCTCTCTTCAGCAGGAACATCACCATCCCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCAGgtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagGGGATGACATCAGCTCTCTTCAGCAGGAACATCACCATCCCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCAGgtaaggctactcagatctacatacccaggtgcctcactcttagttgctca #### Map4k2_ID1625_5 --> 2 - 0 Original Alignment ccACTGGGCCCCTGGAAGAACGGCAGATTGCC-TATGTTTGCCGGGAGGCACTGAAG cctcaatatgacaatttcttctatctaattgtcttttattcaatatatagctACTGGGCCACTTGAAGAGAGGCAAATTGCCCTATG-TTGTTGGGCTGCCCTTAGGgtaagcgatttgcagtaagagtgcccattagaggtcacccacggaagagc Alignment from CESAR ccACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cctcaatatgacaatttcttctatctaattgtcttttattcaatatatagctACTGGGCCACTTGAAGAGAGGCAAATTGCCCTATGTTGTTGGGCTGCCCTTAGGgtaagcgatttgcagtaagagtgcccattagaggtcacccacggaagagc Alignment from Spaln_aa2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cctcaatatgacaatttcttctatctaattgtcttttattcaatatatagCTACTGGGCCACTTGAAGAGAGGCAAATTGCCCTATGTTGTTGGGCTGCCCTTAGGgtaagcgatttgcagtaagagtgcccattagaggtcacccacggaagagc Alignment from Spaln_nt2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCC-TATGTTTGCCGGGAGGCACTGAAG cctcaatatgacaatttcttctatctaattgtcttttattcaatatatagCTACTGGGCCACTTGAAGAGAGGCAAATTGCCCTATG-TTGTTGGGCTGCCCTTAGGgtaagcgatttgcagtaagagtgcccattagaggtcacccacggaagagc Alignment from Pairagon CCACTGGGCCCCTGGAAGAACGGCAGATTG-CCTATGTT cctcaatatgacaatttcttctatctaattgtcttttattcaatatatagCTACTGGGCCACTTGAAGAGAGGCAAATTGCCCTATGTTgttgggctgcccttagggtaagcgatttgcagtaagagtgcccattagaggtcacccacggaagagc Alignment from Exonerate_protein2genome cctcaatatgacaatttcttctatctaattgtcttttattcaatatatagctactgggccacttgaagagaggcaaattgccctatgttgttgggctgcccttagggtaagcgatttgcagtaagagtgcccattagaggtcacccacggaagagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cctcaatatgacaatttcttctatctaattgtcttttattcaatatatagCTACTGGGCCACTTGAAGAGAGGCAAATTGCCCTATGTTGTTGGGCTGCCCTTAGGgtaagcgatttgcagtaagagtgcccattagaggtcacccacggaagagc #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg cactctctcataggcagtccatactggttttccaggtgtttctttttcagctGATTTTGGGGTCACGCGATGGAG-TACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACtggtgagttgttccagagcatcggtgaagcctgctttacctatcccacaatg Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg cactctctcataggcagtccatactggttttccaggtgtttctttttcagctGATTTTGGGGTCACGCGATGGAGTACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACtggtgagttgttccagagcatcggtgaagcctgctttattatttatttattt Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG cactctctcataggcagtccatactggttttccaggtgtttctttttcagCTGATTTTGGGGTCACGCGATGGAGTACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtgagttgttccagagcatcggtgaagcctgctttacctatcccacaatg Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGA--GCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG cactctctcataggcagtccatactggttttccaggtgtttctttttcagCTGATTTTGGG--GTCACGCGATGGAGTACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtgagttgttccagagcatcggtgaagcctgctttacctatcccacaatg Alignment from Pairagon CGGACTTTGGGGT-----------GTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG cactctctcataggcagtccatactggttttccaggtgtttctttttcagCTGATTTTGGGGTCACGCGATGGAGT-----------ACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtgagttgttccagagcatcggtgaagcctgctttacctatcccacaatg Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG cactctctcataggcagtccatactggttttccaggtgtttctttttcagCTGATTTTGGGGTCACGCGATGGAGTACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtgagttgttccagagcatcggtgaagcctgctttacctatcccacaatg Alignment from Exonerate_coding2genome cactctctcataggcagtccatactggttttccaggtgtttctttttcagctgattttggggtcacgcgatggagtacaacatctgttgctaagaggcactctctcataggcagtccatactggtgagttgttccagagcatcggtgaagcctgctttacctatcccacaatg Alignment from GeneWise CGTTCTTTCATTGGCACTCCATACTG CACTCTCTCATAGGCAGTCCATACTGgttttccaggtgtttctttttcagctgattttggggtcacgcgatggagtacaacatctgttgctaagaggcactctctcataggcagtccatactggtgagttgttccagagcatcggtgaagcctgctttacctatcccacaatg #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGCAGCTTC-CAGCCACCCAAGCTAAGAGATAAGACGCGTtg gcagtgtgtctgttcttattccctccaccaatgctgttctttttctaaaggGCACTGATGCTCATGTCAAAAAGCAGTTTCCCAGCCAC-AAAGCTAAGAGATAAGACACGCtggtgagtctccaccacaactggggacccactttctatatgagatagacttt Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg gcagtgtgtctgttcttattccctccaccaatgctgttctttttctaaaggGCACTGATGCTCATGTCAAAAAGCAGTTTCCCAGCCACAAAGCTAAGAGATAAGACACGCtggtgagtctccaccacaactggggacccactttctatatgagatagacttt Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG gcagtgtgtctgttcttattccctccaccaatgctgttctttttctaaagGGCACTGATGCTCATGTCAAAAAGCAGTTTCCCAGCCACAAAGCTAAGAGATAAGACACGCTGgtgagtctccaccacaactggggacccactttctatatgagatagacttt Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG gcagtgtgtctgttcttattccctccaccaatgctgttctttttctaaagGGCACTGATGCTCATGTCAAAAAGCAGTTTCCCAGCCACAAAGCTAAGAGATAAGACACGCTGgtgagtctccaccacaactggggacccactttctatatgagatagacttt Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG gcagtgtgtctgttcttattccctccaccaatgctgttctttttctaaagGGCACTGATGCTCATGTCAAAAAGCAGTTTCCCAGCCACAAAGCTAAGAGATAAGACACGCTGgtgagtctccaccacaactggggacccactttctatatgagatagacttt Alignment from Exonerate_protein2genome gcagtgtgtctgttcttattccctccaccaatgctgttctttttctaaagggcactgatgctcatgtcaaaaagcagtttcccagccacaaagctaagagataagacacgctggtgagtctccaccacaactggggacccactttctatatgagatagacttt Alignment from Exonerate_coding2genome gcagtgtgtctgttcttattccctccaccaatgctgttctttttctaaagggcactgatgctcatgtcaaaaagcagtttcccagccacaaagctaagagataagacacgctggtgagtctccaccacaactggggacccactttctatatgagatagacttt Alignment from GeneWise GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG gcagtgtgtctgttcttattccctccaccaatgctgttctttttctaaagGGCACTGATGCTCATGTCAAAAAGCAGTTTCCCAGCCACAAAGCTAAGAGATAAGACACGCTGgtgagtctccaccacaactggggacccactttctatatgagatagacttt #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTG-GGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtgaaagattttgaaaaagggaacttgtgcctctgtccttccagCATCCTTTTACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGACCCCCATTTACGGTACCCTCT-CCCTGAAGACAGTAAGCTAAAGgtatggcagttaaccaggtatagcctgtggggtaggtgttttccacaaga Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtgaaagattttgaaaaagggaacttgtgcctctgtccttccagCATCCTTTTACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGACCCCCATTTACGGTACCCTCTCCCTGAAGACAGTAAGCTAAAGgtatggcagttaaccaggtatagcctgtggggtaggtgttttccacaaga Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtgaaagattttgaaaaagggaacttgtgcctctgtccttccagCATCCTTTTACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGACCCCCATTTACGGTACCCTCTCCCTGAAGACAGTAAGCTAAAGgtatggcagttaaccaggtatagcctgtggggtaggtgttttccacaaga Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtgaaagattttgaaaaagggaacttgtgcctctgtccttccagCATCCTTTTACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGACCCCCATTTACGGTACCCTCTCCCTGAAGACAGTAAGCTAAAGgtatggcagttaaccaggtatagcctgtggggtaggtgttttccacaaga Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTG-GGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtgaaagattttgaaaaagggaacttgtgcctctgtccttccagCATCCTTTTACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGACCCCCATTTACGGTACCCTCT-CCCTGAAGACAGTAAGCTAAAGgtatggcagttaaccaggtatagcctgtggggtaggtgttttccacaaga Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtgaaagattttgaaaaagggaacttgtgcctctgtccttccagCATCCTTTTACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGACCCCCATTTACGGTACCCTCTCCCTGAAGACAGTAAGCTAAAGgtatggcagttaaccaggtatagcctgtggggtaggtgttttccacaaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtgaaagattttgaaaaagggaacttgtgcctctgtccttccagCATCCTTTTACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGACCCCCATTTACGGTACCCTCTCCCTGAAGACAGTAAGCTAAAGgtatggcagttaaccaggtatagcctgtggggtaggtgttttccacaaga #### Map4k2_ID1634_13 --> 0 - 1 Original Alignment ACCCATGACATGTTTCCAGATACCATCCATTCCCGC-AGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt aagtctactggtgcacagcacaagataattcctgtttgtctaacatccagACCCATGATATGTTCCCAGATACTATCCATTCCCACCAGCCATC-TGGTCCAGCTGAAAGGACTCATTCAGAGATCCAGtgtaaggtatcagatggtgaaaaaatcctaatgagatgaggtaactgcaac Alignment from CESAR ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt aagtctactggtgcacagcacaagataattcctgtttgtctaacatccagACCCATGATATGTTCCCAGATACTATCCATTCCCACCAGCCATCTGGTCCAGCTGAAAGGACTCATTCAGAGATCCAGtgtaaggtatcagatggtgaaaaaatcctaatgagatgaggtaactgcaac Alignment from Spaln_aa2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT aagtctactggtgcacagcacaagataattcctgtttgtctaacatccagACCCATGATATGTTCCCAGATACTATCCATTCCCACCAGCCATCTGGTCCAGCTGAAAGGACTCATTCAGAGATCCAGTgtaaggtatcagatggtgaaaaaatcctaatgagatgaggtaactgcaac Alignment from Spaln_nt2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT aagtctactggtgcacagcacaagataattcctgtttgtctaacatccagACCCATGATATGTTCCCAGATACTATCCATTCCCACCAGCCATCTGGTCCAGCTGAAAGGACTCATTCAGAGATCCAGTgtaaggtatcagatggtgaaaaaatcctaatgagatgaggtaactgcaac Alignment from Pairagon ACCCATGACATGTTTCCAGATACCATCCATTCCCG-CAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT aagtctactggtgcacagcacaagataattcctgtttgtctaacatccagACCCATGATATGTTCCCAGATACTATCCATTCCCACCAGCCATC-TGGTCCAGCTGAAAGGACTCATTCAGAGATCCAGTgtaaggtatcagatggtgaaaaaatcctaatgagatgaggtaactgcaac Alignment from Exonerate_protein2genome aagtctactggtgcacagcacaagataattcctgtttgtctaacatccagacccatgatatgttcccagatactatccattcccaccagccatctggtccagctgaaaggactcattcagagatccagtgtaaggtatcagatggtgaaaaaatcctaatgagatgaggtaactgcaac Alignment from Exonerate_coding2genome aagtctactggtgcacagcacaagataattcctgtttgtctaacatccagacccatgatatgttcccagatactatccattcccaccagccatctggtccagctgaaaggactcattcagagatccagtgtaaggtatcagatggtgaaaaaatcctaatgagatgaggtaactgcaac Alignment from GeneWise ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT aagtctactggtgcacagcacaagataattcctgtttgtctaacatccagACCCATGATATGTTCCCAGATACTATCCATTCCCACCAGCCATCTGGTCCAGCTGAAAGGACTCATTCAGAGATCCAGTgtaaggtatcagatggtgaaaaaatcctaatgagatgaggtaactgcaac #### Map4k2_ID1635_14 --> 2 - 0 Original Alignment ttCACCAAGTGAAATTCGGT------------------GCTCCTCGCCGG-AAGGAGACAGATCCTCTCAATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagttCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGCGAAGAGA-AGAC------AATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from CESAR ttCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTC------------AATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagttCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGCGAAGAGAAGACAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Spaln_aa2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTC------------AATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagTTCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGCGAAGAGAAGACAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Spaln_nt2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCT------------CAATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagTTCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGCGAAGAGAAGACAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Pairagon TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGAC------------------AGATCCTCTCAATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagTTCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGCGAAGAGAAGA------CAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Exonerate_protein2genome aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagttcaccaagtggaactcacagctccacaccagaaggagactccccaacagcgaagagaagacaatgatgcagtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Exonerate_coding2genome aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagttcaccaagtggaactcacagctccacaccagaaggagactccccaacagcgaagagaagacaatgatgcagtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from GeneWise TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTC------------AATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagTTCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGCGAAGAGAAGACAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa #### Map4k2_ID1638_17 --> 1 - 0 Original Alignment gAGCCTGACTATCCGG-CCAGCCTTAGAACTCCAG actatccccctcacacatagtaataccatttatatatttttttcttccaggAGCCTGGCTATCCGGCCCAG-CTTAGAACTGCAGgtgagccaggatctcatattatactaggtatggactcaagttctgcgtta Alignment from CESAR gAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatccccctcacacatagtaataccatttatatatttttttcttccaggAGCCTGGCTATCCGGCCCAGCTTAGAACTGCAGgtgagccaggatctcatattatactaggtatggactcaagttctgcgtta Alignment from Spaln_aa2Genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatccccctcacacatagtaataccatttatatatttttttcttccagGAGCCTGGCTATCCGGCCCAGCTTAGAACTGCAGgtgagccaggatctcatattatactaggtatggactcaagttctgcgtta Alignment from Spaln_nt2Genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatccccctcacacatagtaataccatttatatatttttttcttccagGAGCCTGGCTATCCGGCCCAGCTTAGAACTGCAGgtgagccaggatctcatattatactaggtatggactcaagttctgcgtta Alignment from Pairagon GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatccccctcacacatagtaataccatttatatatttttttcttccagGAGCCTGGCTATCCGGCCCAGCTTAGAACTGCAGgtgagccaggatctcatattatactaggtatggactcaagttctgcgtta Alignment from Exonerate_protein2genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG actatccccctcacacatagtaataccatttatatatttttttcttccagGAGCCTGGCTATCCGGCCCAGCTTAGAACTGCAGgtgagccaggatctcatattatactaggtatggactcaagttctgcgtta Alignment from Exonerate_coding2genome actatccccctcacacatagtaataccatttatatatttttttcttccaggagcctggctatccggcccagcttagaactgcaggtgagccaggatctcatattatactaggtatggactcaagttctgcgtta Alignment from GeneWise GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG ctcacacatagTAAT---------ACCATTTATATATTTTTTTCTTCCAGGAGCCTGGCTATCCGGCCCAGCTTAGAACTGCAGgtgagccaggatctcatattatactaggtatggactcaagttctgcgtta #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAA-CGGGCTCCATTTTTGGGGCTGCCCCAC---ACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg gggccttcgggcattttaaggggtcagtaaaccaagcactccccatacagGAACTTGACTCCCCAGATGATGCCATAGGAACTATCAAGCCAAGCAC-ATTCCTGGGCCTCCCCCACACTACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGT---CCAggtaagatcatggaatgataaggcacatgatatgtcatggacatcccaggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCAC---ACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg gggccttcgggcattttaaggggtcagtaaaccaagcactccccatacagGAACTTGACTCCCCAGATGATGCCATAGGAACTATCAAGCCAAGCACATTCCTGGGCCTCCCCCACACTACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGT---CCAggtaagatcatggaatgataaggcacatgatatgtcatggacatcccaggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCAC---ACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG gggccttcgggcattttaaggggtcagtaaaccaagcactccccatacagGAACTTGACTCCCCAGATGATGCCATAGGAACTATCAAGCCAAGCACATTCCTGGGCCTCCCCCACACTACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGT---CCAGgtaagatcatggaatgataaggcacatgatatgtcatggacatcccaggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACT---GAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG gggccttcgggcattttaaggggtcagtaaaccaagcactccccatacagGAACTTGACTCCCCAGATGATGCCATAGGAACTATCAAGCCAAGCACATTCCTGGGCCTCCCCCACACTACTGAGTCAACATCTGGTGATAATGCCCAGTCCTG---TCCAGgtaagatcatggaatgataaggcacatgatatgtcatggacatcccaggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCAC---ACTGAGTCAACATCTGGTGACAATGCCCAGTCCTG------------------------------------------------------- gggccttcgggcattttaaggggtcagtaaaccaagcactccccatacagGAACTTGACTCCCCAGATGATGCCATAGGAACTATCAAGCCAAGCACATTCCTGGGCCTCCCCCACACTACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGTCCAGGTAAGATCATGGAATGATAAGGCACATGATATGTCATGGACATCCCAGGG Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCAC---ACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG gggccttcgggcattttaaggggtcagtaaaccaagcactccccatacagGAACTTGACTCCCCAGATGATGCCATAGGAACTATCAAGCCAAGCACATTCCTGGGCCTCCCCCACACTACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGT---CCAGgtaagatcatggaatgataaggcacatgatatgtcatggacatcccaggg Alignment from Exonerate_coding2genome gggccttcgggcattttaaggggtcagtaaaccaagcactccccatacaggaacttgactccccagatgatgccataggaactatcaagccaagcacattcctgggcctcccccacactactgagtcaacatctggtgataatgcccagtcctgtccaggtaagatcatggaatgataaggcacatgatatgtcatggacatcccaggg Alignment from GeneWise AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACT---GAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG --GCCTTCGGGCATTTTAAGGGGTCAGTAAACCAAGCACTCCCCATACAGGAACTTGACTCCCCAGATGATGCCATAGGAACTATCAAGCCAAGCACATTCCTGGGCCTCCCCCACACTACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGT---CCAGgtaagatcatggaatgataaggcacatgatatgtcatggacatcccaggg #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGCCAT-GGGCTTCCTCCCACCCCCAAGGTGCAC taactagatggtaagggggggaatcctatttccctctctctgcccttcagCAGTCGTCCTGTTATCGGTCTCCCTC-CACCCCAAAGGTCCCTgtgagtggttccattgtcttagctcactggcaagccttgtttctttcctt Alignment from CESAR CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactagatggtaagggggggaatcctatttccctctctctgcccttcagCAGTCGTCCTGTTATCGGTCTCCCTCCACCCCAAAGGTCCCTgtgagtggttccattgtcttagctcactggggatgttatgacactcctgt Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactagatggtaagggggggaatcctatttccctctctctgcccttcagCAGTCGTCCTGTTATCGGTCTCCCTCCACCCCAAAGGTCCCTgtgagtggttccattgtcttagctcactggcaagccttgtttctttcctt Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactagatggtaagggggggaatcctatttccctctctctgcccttcagCAGTCGTCCTGTTATCGGTCTCCCTCCACCCCAAAGGTCCCTgtgagtggttccattgtcttagctcactggcaagccttgtttctttcctt Alignment from Pairagon CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactagatggtaagggggggaatcctatttccctctctctgcccttcagCAGTCGTCCTGTTATCGGTCTCCCTCCACCCCAAAGGTCCCTgtgagtggttccattgtcttagctcactggcaagccttgtttctttcctt Alignment from Exonerate_protein2genome TGCCATGGGCTTCCTCCCACCCCCAAGG taactagatggtaagggggggaatcctatttccctctctctgcccttcagcagtcgtcctgttatcggtctccctccaccccaaaggtccctgtgagtggttccattgtcttagCTCACTGGC---AAGCCTTGTTTCTTTC Alignment from Exonerate_coding2genome taactagatggtaagggggggaatcctatttccctctctctgcccttcagcagtcgtcctgttatcggtctccctccaccccaaaggtccctgtgagtggttccattgtcttagctcactggcaagccttgtttctttcctt Alignment from GeneWise CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactagatggtaagggggggaatcctatttccctctctctgcccttcagCAGTCGTCCTGTTATCGGTCTCCCTCCACCCCAAAGGTCCCTgtgagtggttccattgtcttagctcactggcaagccttgtttctttcctt #### Map4k2_ID1643_22 --> 2 - 0 Original Alignment acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTAT-ACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCT tttgtaattcagaggcaagcatgatgtgaatctatggctcctcttctcagacCAGTTCTTGATAGTGGGAGCTAAGGAGGGTTTCTATCACCCTCA-CCTGCATAAACTGCATGAAGATCGAATGGAAAAGgtgcgtctgttaaatattttttttattacagCTGATCTCTCAGCACTACA Alignment from CESAR acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCT tttgtaattcagaggcaagcatgatgtgaatctatggctcctcttctcagacCAGTTCTTGATAGTGGGAGCTAAGGAGGGTTTCTATCACCCTCACCTGCATAAACTGCATGAAGATCGAATGGAAAAGgtgcgtctgtccttagaatatctatttacagCTGATCTCTCAGCACTACA Alignment from Spaln_aa2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCT tttgtaattcagaggcaagcatgatgtgaatctatggctcctcttctcagACCAGTTCTTGATAGTGGGAGCTAAGGAGGGTTTCTATCACCCTCACCTGCATAAACTGCATGAAGATCGAATGGAAAAGgtgcgtctgttaaatattttttttattacagCTGATCTCTCAGCACTACA Alignment from Spaln_nt2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTAT-ACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG-------------------------------CTCATCTCCCAGCGCTGCT tttgtaattcagaggcaagcatgatgtgaatctatggctcctcttctcagACCAGTTCTTGATAGTGGGAGCTAAGGAGGGTTTCTATCACCCTC-ACCTGCATAAACTGCATGAAGATCGAATGGAAAAGGTGCGTCTGTTAAATATTTTTTTTATTACAGCTGATCTCTCAGCACTACA Alignment from Pairagon ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCT tttgtaattcagaggcaagcatgatgtgaatctatggctcctcttctcagACCAGTTCTTGATAGTGGGAGCTAAGGAGGGTTTCTATCACCCTCACCTGCATAAACTGCATGAAGATCGAATGGAAAAGgtgcgtctgttaaatattttttttattacagCTGATCTCTCAGCACTACA Alignment from Exonerate_protein2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCT tttgtaattcagaggcaagcatgatgtgaatctatggctcctcttctcagACCAGTTCTTGATAGTGGGAGCTAAGGAGGGTTTCTATCACCCTCACCTGCATAAACTGCATGAAGATCGAATGGAAAAGgtgcgtctgttaaatattttttttattacagCTGATCTCTCAGCACTACA Alignment from Exonerate_coding2genome AAGCTCATCTCCCAGCGCTGCT tttgtaattcagaggcaagcatgatgtgaatctatggctcctcttctcagaccagttcttgatagtgggagctaaggagggtttctatcaccctcacctgcataaactgcatgaagatcgaatggaaaaggtgcgtctgttaaatattttttttattaCAGCTGATCTCTCAGCACTACA Alignment from GeneWise ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCT tttgtaattcagaggcaagcatgatgtgaatctatggctcctcttctcagACCAGTTCTTGATAGTGGGAGCTAAGGAGGGTTTCTATCACCCTCACCTGCATAAACTGCATGAAGATCGAATGGAAAAGgtgcgtctgttaaatattttttttattacagCTGATCTCTCAGCACTACA #### March5_ID7302_4 --> 0 - 1 Original Alignment GTTGTAGGCCATAAAGAAGGG-CTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCCTAGATG-TATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from CESAR GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCCTAGATGTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Spaln_aa2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCCTAGATGTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Spaln_nt2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCCTAGATGTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Pairagon GTTGTAGGCCATAAAGAAGGG-CTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCCTAGATG-TATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Exonerate_protein2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCCTAGATGTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Exonerate_coding2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCCTAGATGTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from GeneWise GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCCTAGATGTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAG-ACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagctGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAACACAG-ACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagctGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAACACAGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAACACAGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAACACAGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAG---ACTACTGCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAA-----------AGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGA-----------GGAACACAGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTA---CTGCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAACACAGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAACACAGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAACACAGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATG-TCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG atgctctgcaataacttatatgtcagataactgctcttctctttttccagGAGCTACGGGAACGGGTGTTGAGGGGGAAATACCGTATTCCGTTCTACATACTCCACTG-CTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtttgtaacctgagataacagtcaggaaaggagagcaatgtaccaattag Alignment from CESAR GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG atgctctgcaataacttatatgtcagataactgctcttctctttttccagGAGCTACGGGAACGGGTGTTGAGGGGGAAATACCGTATTCCGTTCTACATACTCCACTGCTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtttgtaacctgagataacagtcaggaaaggagagcaatgtaccaattag Alignment from Spaln_aa2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG atgctctgcaataacttatatgtcagataactgctcttctctttttccagGAGCTACGGGAACGGGTGTTGAGGGGGAAATACCGTATTCCGTTCTACATACTCCACTGCTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtttgtaacctgagataacagtcaggaaaggagagcaatgtaccaattag Alignment from Spaln_nt2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG atgctctgcaataacttatatgtcagataactgctcttctctttttccagGAGCTACGGGAACGGGTGTTGAGGGGGAAATACCGTATTCCGTTCTACATACTCCACTGCTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtttgtaacctgagataacagtcaggaaaggagagcaatgtaccaattag Alignment from Pairagon GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATG-TCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG atgctctgcaataacttatatgtcagataactgctcttctctttttccagGAGCTACGGGAACGGGTGTTGAGGGGGAAATACCGTATTCCGTTCTACATACTCCACTG-CTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtttgtaacctgagataacagtcaggaaaggagagcaatgtaccaattag Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAG atgctctgcaataacttatatgtcagataactgctcttctctttttccagGAGCTACGGGAACGGGTGTTGAGGGGGAAATACCGTATTCCGTTCTACATACTCCACTGCTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAagaggcactctagatgtttgtaacctgagataacagtcaggaaaggagagcaatgtaccaattag Alignment from Exonerate_coding2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAG atgctctgcaataacttatatgtcagataactgctcttctctttttccagGAGCTACGGGAACGGGTGTTGAGGGGGAAATACCGTATTCCGTTCTACATACTCCACTGCTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAagaggcactctagatgtttgtaacctgagataacagtcaggaaaggagagcaatgtaccaattag Alignment from GeneWise GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG atgctctgcaataacttatatgtcagataactgctcttctctttttccagGAGCTACGGGAACGGGTGTTGAGGGGGAAATACCGTATTCCGTTCTACATACTCCACTGCTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtttgtaacctgagataacagtcaggaaaggagagcaatgtaccaattag #### Mgea5_ID9593_8 --> 2 - 1 Original Alignment ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAG-TTCGGTGTCCCTCATCAGTACAGCa ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagctGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGCATTGGTGTCC-TCACCAATACAGCagtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from CESAR ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCa ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagctGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGCATTGGTGTCCTCACCAATACAGCagtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Spaln_aa2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGCATTGGTGTCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Spaln_nt2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGCATTGGTGTCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Pairagon CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGT-TCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGCATTGGTGT-CCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Exonerate_protein2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGCATTGGTGTCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Exonerate_coding2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGCATTGGTGTCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from GeneWise CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGCATTGGTGTCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc #### Mta2_ID2532_5 --> 1 - 0 Original Alignment gGGGAAGTGCAGCGTG-ACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcaggGTAAAATGCAGTGTGCAGTCTTTTGA-CGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from CESAR gGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcaggGTAAAATGCAGTGTGCAGTCTTTTGACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Spaln_aa2Genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGCAGTCTTTTGACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Spaln_nt2Genome GGGGAAGTGCAGCGTG-ACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGCAGTCTTTTG-ACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Pairagon GGGGAAGTGCAGCGTG-ACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGCAGTCTTTTG-ACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Exonerate_protein2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGCAGTCTTTTGACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Exonerate_coding2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGCAGTCTTTTGACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from GeneWise GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGCAGTCTTTTGACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAA-GCTGAGATCCCAGATCGTTTGGCAGAGg accattaatatctgcactaaaccacattttttttgtcttctctgtccaagGAGTGTTTTTTTTATTCATTGGTGTTTGAGCCTGTGCAGAAAACACTACTGGCAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAACGCTGCAA-TCCAGATCACTTGGCAGAGggtaatcaaaagtctggtttgaacataattttttctctcaacgatatcaat Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg accattaatatctgcactaaaccacattttttttgtcttctctgtccaagGAGTGTTTTTTTTATTCATTGGTGTTTGAGCCTGTGCAGAAAACACTACTGGCAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAACGCTGCAATCCAGATCACTTGGCAGAGggtaatcaaaagtctggtttgaacataattttttctctcaacgatatcaat Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG accattaatatctgcactaaaccacattttttttgtcttctctgtccaagGAGTGTTTTTTTTATTCATTGGTGTTTGAGCCTGTGCAGAAAACACTACTGGCAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAACGCTGCAATCCAGATCACTTGGCAGAGGgtaatcaaaagtctggtttgaacataattttttctctcaacgatatcaat Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAA-GCTGAGATCCCAGATCGTTTGGCAGAGG accattaatatctgcactaaaccacattttttttgtcttctctgtccaagGAGTGTTTTTTTTATTCATTGGTGTTTGAGCCTGTGCAGAAAACACTACTGGCAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAACGCTGCAAT-CCAGATCACTTGGCAGAGGgtaatcaaaagtctggtttgaacataattttttctctcaacgatatcaat Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAA-GCTGAGATCCCAGATCGTTTGGCAGAGG accattaatatctgcactaaaccacattttttttgtcttctctgtccaagGAGTGTTTTTTTTATTCATTGGTGTTTGAGCCTGTGCAGAAAACACTACTGGCAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAACGCTGCAAT-CCAGATCACTTGGCAGAGGgtaatcaaaagtctggtttgaacataattttttctctcaacgatatcaat Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG accattaatatctgcactaaaccacattttttttgtcttctctgtccaagGAGTGTTTTTTTTATTCATTGGTGTTTGAGCCTGTGCAGAAAACACTACTGGCAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAACGCTGCAATCCAGATCACTTGGCAGAGGgtaatcaaaagtctggtttgaacataattttttctctcaacgatatcaat Alignment from Exonerate_coding2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG accattaatatctgcactaaaccacattttttttgtcttctctgtccaagGAGTGTTTTTTTTATTCATTGGTGTTTGAGCCTGTGCAGAAAACACTACTGGCAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAACGCTGCAATCCAGATCACTTGGCAGAGGgtaatcaaaagtctggtttgaacataattttttctctcaacgatatcaat Alignment from GeneWise GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG accattaatatctgcactaaaccacattttttttgtcttctctgtccaagGAGTGTTTTTTTTATTCATTGGTGTTTGAGCCTGTGCAGAAAACACTACTGGCAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAACGCTGCAATCCAGATCACTTGGCAGAGGgtaatcaaaagtctggtttgaacataattttttctctcaacgatatcaat #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCC-CTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcatccaatatgaagaatcaggaccctgtgtctggttatagtGCTGTGAGGACTTTTGTACGGGCTCCTAG-TTGCAATTGCTCCATTTCCATTCAAAAGTCCAGCTTGGACATGAGTGCA------GCTACCACAGGTATTATCACCCTGgtaaaaaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCA------ATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcaggaccctgtgtctggttatagtGCTGTGAGGACTTTTGTACGGGCTCCTAGTTGCAATTGCTCCATTTCCATTCAAAAGTCCAGCTTGGACATGAGTGCAGCTACCACAGGT---ATTATCACCCTGgtaaaaaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTA------GACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcaggaccctgtgtctggttatagTGCTGTGAGGACTTTTGTACGGGCTCCTAGTTGCAATTGCTCCATTTCCATTCAAAAGTCCAGCTTGGACATGAGTGCAGCTACCACAGGTATT---ATCACCCTGgtaaaaaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGC-CCTAG-----ACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcaggaccctgtgtctggttatagTGCTGTGAGGACTTTTGTACGGGCTCCTAGTTGCAATTGCTCCATTTCCATTCAAAAGTCCAGCTTGGACATGAGTGCA---GCTACCACAGGTATTATCACCCTGgtaaaaaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGA----------TATCACTCTG gctaatgtggcatccaatatgaagaatcaggaccctgtgtctggttatagtgctgtgaggacttttgtacgggctcctagttgcaattgctccatttccattcaaaagtccag---------------------------------------------------------CTTGGACATGAGTGCAGCT-------------ACCACAGGTATTATCACCCTGgtaaaaaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Exonerate_protein2genome TCTG GCTAatgtggcatccaatatgaagaatcaggaccctgtgtctggttatagtgctgtgaggacttttgtacgggctcctagttgcaattgctccatttccattcaaaagtccagcttggacatgagtgcagctaccacaggtattatcaccctggtaaaaaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from Exonerate_coding2genome TCTG GCTAatgtggcatccaatatgaagaatcaggaccctgtgtctggttatagtgctgtgaggacttttgtacgggctcctagttgcaattgctccatttccattcaaaagtccagcttggacatgagtgcagctaccacaggtattatcaccctggtaaaaaccaagtcacaaatatttttgtatgataagccaagagtggagta Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCC------CTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcatccaatatgaagaatcaggaccctgtgtctggttatagTGCTGTGAGGACTTTTGTACGGGCTCCTAGTTGCAATTGCTCCATTTCCATTCAAAAGTCCAGCTTGGACATGAGTGCAGCTACCACAGGTATT---ATCACCCTGgtaaaaaccaagtcacaaatatttttgtatgataagccaagagtggagta #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGAT-GAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATCGAGATGGGAG-ATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATCGAGATGGGAGATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATCGAGATGGGAGATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGAT-GAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATCGAGATGG-GAGATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTG------TCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATCGAGATGGGA------GATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATCGAGATGGGAGATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATCGAGATGGGAGATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATCGAGATGGGAGATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCAAGCATA-GTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaaagacaaggtgaccaattgaacactcctattttatttcccacctcagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTT-TTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagccgaaatacaagcaaaccagaatcaaaggtggtcagcagtctgtt Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaaagacaaggtgaccaattgaacactcctattttatttcccacctcagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagccgaaatacaagcaaaccagaatcaaaggtggtcagcagtctgtt Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaaagacaaggtgaccaattgaacactcctattttatttcccacctcagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagccgaaatacaagcaaaccagaatcaaaggtggtcagcagtctgtt Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaaagacaaggtgaccaattgaacactcctattttatttcccacctcagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagccgaaatacaagcaaaccagaatcaaaggtggtcagcagtctgtt Alignment from Pairagon CTACCCTGGAAGTCACTTGCAAGCATA-GTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaaagacaaggtgaccaattgaacactcctattttatttcccacctcagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTT-TTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagccgaaatacaagcaaaccagaatcaaaggtggtcagcagtctgtt Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaaagacaaggtgaccaattgaacactcctattttatttcccacctcagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagccgaaatacaagcaaaccagaatcaaaggtggtcagcagtctgtt Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGAAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACAT aaaaagacaaggtgaccaattgaacactcctattttatttcccacctcagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGGTAAGCCGAAATACAAGCAAACCAGAATCAAAGGTGGTCAGCAGTCTGTT Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaaagacaaggtgaccaattgaacactcctattttatttcccacctcagCTACCCTGGAAGTCACTTGCAAGCATACGTCCAGTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagccgaaatacaagcaaaccagaatcaaaggtggtcagcagtctgtt #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTta gtgctcatgggatgactccaagtttggcacattctcttttgtttttgcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAAC-GGTGTATATCCCCACCtagtaagtctcattccaaaataagaacacctaatcatggtgacctaatgtct Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTta gtgctcatgggatgactccaagtttggcacattctcttttgtttttgcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACCtagtaagtctcattccaaaataagaacacctaatcatggtgacctaatgtct Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gtgctcatgggatgactccaagtttggcacattctcttttgtttttgcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACCTAgtaagtctcattccaaaataagaacacctaatcatggtgacctaatgtct Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gtgctcatgggatgactccaagtttggcacattctcttttgtttttgcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACCTAgtaagtctcattccaaaataagaacacctaatcatggtgacctaatgtct Alignment from Pairagon AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gtgctcatgggatgactccaagtttggcacattctcttttgtttttgcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACCTAgtaagtctcattccaaaataagaacacctaatcatggtgacctaatgtct Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gtgctcatgggatgactccaagtttggcacattctcttttgtttttgcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACCTAgtaagtctcattccaaaataagaacacctaatcatggtgacctaatgtct Alignment from Exonerate_coding2genome gtgctcatgggatgactccaagtttggcacattctcttttgtttttgcagaaaaggctaaaagctgccgaagcagacagtatacttgaaacggtgtatatccccacctagtaagtctcattccaaaataagaacacctaatcatggtgacctaatgtct Alignment from GeneWise AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gtgctcatgggatgactccaagtttggcacattctcttttgtttttgcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACGGTGTATATCCCCACCTAgtaagtctcattccaaaataagaacacctaatcatggtgacctaatgtct #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGG-TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactataatacagcaattcctttaaagtttgaacttttacttttagcaACACAGTCTGCACAGTGGCTATG-CTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGAAAACTCCTACCCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaaaggtgagtgtgtctggagcgaccataagaattgaacctaaggaaga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactataatacagcaattcctttaaagtttgaacttttacttttagcaACACAGTCTGCACAGTGGCTATGCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGAAAACTCCTACCCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaaaggtgagtgtgtctggagcgaccataagaattgaacctaaggaaga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactataatacagcaattcctttaaagtttgaacttttacttttagCAACACAGTCTGCACAGTGGCTATGCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGAAAACTCCTACCCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaaaggtgagtgtgtctggagcgaccataagaattgaacctaaggaaga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactataatacagcaattcctttaaagtttgaacttttacttttagCAACACAGTCTGCACAGTGGCTATGCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGAAAACTCCTACCCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaaaggtgagtgtgtctggagcgaccataagaattgaacctaaggaaga Alignment from Pairagon CCACACAGTCTGCCCAGTGG-TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGG--------------- gaatcactataatacagcaattcctttaaagtttgaacttttacttttagCAACACAGTCTGCACAGTGGCTATG-CTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGAAAACTCCTACCCAGCTAGAAGGAGCAGCTCGGATAACAACCGTAAAGgtgagtgtgtctggagcgaccataagaattgaacctaaggaaga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactataatacagcaattcctttaaagtttgaacttttacttttagCAACACAGTCTGCACAGTGGCTATGCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGAAAACTCCTACCCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaaaggtgagtgtgtctggagcgaccataagaattgaacctaaggaaga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactataatacagcaattcctttaaagtttgaacttttacttttagCAACACAGTCTGCACAGTGGCTATGCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGAAAACTCCTACCCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaaaggtgagtgtgtctggagcgaccataagaattgaacctaaggaaga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactataatacagcaattcctttaaagtttgaacttttacttttagCAACACAGTCTGCACAGTGGCTATGCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGAAAACTCCTACCCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaaaggtgagtgtgtctggagcgaccataagaattgaacctaaggaaga #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTG-AAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg gctggtgaccctggagacctttctctccacacatgtatggaatattttaggcTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGCAAAATTC-CCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGggtgaggaggatcacattcccaagccaggtcagttttttatatcacttgca Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg gctggtgaccctggagacctttctctccacacatgtatggaatattttaggcTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGCAAAATTCCCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGggtgaggaggatcacattcccaagccaggtcagattaatgtttttgttctt Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctccacacatgtatggaatattttagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGCAAAATTCCCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtgaggaggatcacattcccaagccaggtcagttttttatatcacttgca Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctccacacatgtatggaatattttagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGCAAAATTCCCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtgaggaggatcacattcccaagccaggtcagttttttatatcacttgca Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctccacacatgtatggaatattttagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGCAAAATTCCCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtgaggaggatcacattcccaagccaggtcagttttttatatcacttgca Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctccacacatgtatggaatattttagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGCAAAATTCCCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtgaggaggatcacattcccaagccaggtcagttttttatatcacttgca Alignment from Exonerate_coding2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctccacacatgtatggaatattttagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGCAAAATTCCCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtgaggaggatcacattcccaagccaggtcagttttttatatcacttgca Alignment from GeneWise GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTG--------------------------------------------------- gctggtgaccctggagacctttctctccacacatgtatggaatattttagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGCAAAATTCCCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGGTGAGGAGGATCACATTCCCAAGCCAGGTCAGTTTTTTATATCACTTGCA #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTG-AAACGTTCCTATGAGACT gaaggatcacattcccaagccaggtcagattaatgtttttgttctttcaggtGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGCAAAC-CTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ggaggatcacattcccaagccaggtcagattaatgtttttgttctttcaggtGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGCAAACCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gaaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGCAAACCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gaaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGCAAACCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gaaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGCAAACCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gaaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGCAAACCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gaaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGCAAACCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from GeneWise -------------------------------------------------GTGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT GAAGGATCACATTCCCAAGCCAGGTCAGATTAATGTTTTTGTTCTTTCAGGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGCAAACCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGC-TCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag taaattcccaaccacatccagggatggcatccactctgatctctcctcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGAAGGCCCCTGGCTTCAGGGATTCGTTCAAGCCTCTCAGCCAG-AGCCAAGCGCCAAAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGATGCTaggtaagcaatgagtgaaccaggaaaaactggtaaccaatcacatctggaag Alignment from CESAR ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag taaattcccaaccacatccagggatggcatccactctgatctctcctcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGAAGGCCCCTGGCTTCAGGGATTCGTTCAAGCCTCTCAGCCAGAGCCAAGCGCCAAAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGATGCTaggtaagcaatgagtgaaccaggaaaaactggtaaccaatcacatctggaag Alignment from Spaln_aa2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattcccaaccacatccagggatggcatccactctgatctctcctcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGAAGGCCCCTGGCTTCAGGGATTCGTTCAAGCCTCTCAGCCAGAGCCAAGCGCCAAAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGATGCTAGgtaagcaatgagtgaaccaggaaaaactggtaaccaatcacatctggaag Alignment from Spaln_nt2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattcccaaccacatccagggatggcatccactctgatctctcctcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGAAGGCCCCTGGCTTCAGGGATTCGTTCAAGCCTCTCAGCCAGAGCCAAGCGCCAAAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGATGCTAGgtaagcaatgagtgaaccaggaaaaactggtaaccaatcacatctggaag Alignment from Pairagon ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAG-CTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattcccaaccacatccagggatggcatccactctgatctctcctcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGAAGGCCCCTGGCTTCAGGGATTCGTTCAAGCCTCTCAGCCAG-AGCCAAGCGCCAAAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGATGCTAGgtaagcaatgagtgaaccaggaaaaactggtaaccaatcacatctggaag Alignment from Exonerate_protein2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattcccaaccacatccagggatggcatccactctgatctctcctcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGAAGGCCCCTGGCTTCAGGGATTCGTTCAAGCCTCTCAGCCAGAGCCAAGCGCCAAAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGATGCTAGgtaagcaatgagtgaaccaggaaaaactggtaaccaatcacatctggaag Alignment from Exonerate_coding2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattcccaaccacatccagggatggcatccactctgatctctcctcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGAAGGCCCCTGGCTTCAGGGATTCGTTCAAGCCTCTCAGCCAGAGCCAAGCGCCAAAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGATGCTAGgtaagcaatgagtgaaccaggaaaaactggtaaccaatcacatctggaag Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG taaattcccaaccacatccagggatggcatccactctgatctctcctcagATGGCAGGTGCGGGGGTCCCCTTCTCTGTGAATGGAAGGCCCCTGGCTTCAGGGATTCGTTCAAGCCTCTCAGCCAGAGCCAAGCGCCAAAAATTAAACCCTGCTGAGGCTCCCAATCCAGTGGTATTTGTAGCTACGAAGGATGCTAGgtaagcaatgagtgaaccaggaaaaactggtaaccaatcacatctggaag #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATC-AGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag atgggcatctcaagtctatatagggcaacacagctggcttcttcctacagTCATCATCTGCAGTCCCAGACCAAGCCTGCATCCAGTCAGC-TTTTCTGCAGGGGACCATCATAGCTCTCGTAGTAGTGATGGCCTTCaggtaggactcttaaccaggctgagtccctaaaagtgccatacaagctctca Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag atgggcatctcaagtctatatagggcaacacagctggcttcttcctacagTCATCATCTGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCTTTTCTGCAGGGGACCATCATAGCTCTCGTAGTAGTGATGGCCTTCaggtaggactcttaaccaggctgagtccctaaaagtgccatacaagctctca Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatctcaagtctatatagggcaacacagctggcttcttcctacagTCATCATCTGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCTTTTCTGCAGGGGACCATCATAGCTCTCGTAGTAGTGATGGCCTTCAGgtaggactcttaaccaggctgagtccctaaaagtgccatacaagctctca Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatctcaagtctatatagggcaacacagctggcttcttcctacagTCATCATCTGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCTTTTCTGCAGGGGACCATCATAGCTCTCGTAGTAGTGATGGCCTTCAGgtaggactcttaaccaggctgagtccctaaaagtgccatacaagctctca Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCAT-CAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatctcaagtctatatagggcaacacagctggcttcttcctacagTCATCATCTGCAGTCCCAGACCAAGCCTGCATCCAGTCAGC-TTTTCTGCAGGGGACCATCATAGCTCTCGTAGTAGTGATGGCCTTCAGgtaggactcttaaccaggctgagtccctaaaagtgccatacaagctctca Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatctcaagtctatatagggcaacacagctggcttcttcctacagTCATCATCTGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCTTTTCTGCAGGGGACCATCATAGCTCTCGTAGTAGTGATGGCCTTCAGgtaggactcttaaccaggctgagtccctaaaagtgccatacaagctctca Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatctcaagtctatatagggcaacacagctggcttcttcctacagTCATCATCTGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCTTTTCTGCAGGGGACCATCATAGCTCTCGTAGTAGTGATGGCCTTCAGgtaggactcttaaccaggctgagtccctaaaagtgccatacaagctctca Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatctcaagtctatatagggcaacacagctggcttcttcctacagTCATCATCTGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCTTTTCTGCAGGGGACCATCATAGCTCTCGTAGTAGTGATGGCCTTCAGgtaggactcttaaccaggctgagtccctaaaagtgccatacaagctctca #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAA-AAGAGGCCCCCTAAACTGGCCAATAAG cgcaggtgtgttatgcattatccattttctaaaatgacaatgtgttttagcCATGCTGGTAGTGAATTTAGTAGGGCAGGCAGTGTCCCTCACAAACAAGAGGC-CCCCAGGCTTGCCAATAAGgtaagacagtccacagcagcgtacacttctacccatccatgttctagagc Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG cgcaggtgtgttatgcattatccattttctaaaatgacaatgtgttttagcCATGCTGGTAGTGAATTTAGTAGGGCAGGCAGTGTCCCTCACAAACAAGAGGCCCCCAGGCTTGCCAATAAGgtaagacagtccacagcagcgtacacttctacccatccatgttctagagc Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG cgcaggtgtgttatgcattatccattttctaaaatgacaatgtgttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCAGTGTCCCTCACAAACAAGAGGCCCCCAGGCTTGCCAATAAGgtaagacagtccacagcagcgtacacttctacccatccatgttctagagc Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAA-AAGAGGCCCCCTAAACTGGCCAATAAG cgcaggtgtgttatgcattatccattttctaaaatgacaatgtgttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCAGTGTCCCTCACAAACAAGAGGCCCCC-AGGCTTGCCAATAAGgtaagacagtccacagcagcgtacacttctacccatccatgttctagagc Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAA-AAGAGGCCCCCTAAACTGGCCAATAAG cgcaggtgtgttatgcattatccattttctaaaatgacaatgtgttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCAGTGTCCCTCACAAACAAGAGGCCCCC-AGGCTTGCCAATAAGgtaagacagtccacagcagcgtacacttctacccatccatgttctagagc Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG cgcaggtgtgttatgcattatccattttctaaaatgacaatgtgttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCAGTGTCCCTCACAAACAAGAGGCCCCCAGGCTTGCCAATAAGgtaagacagtccacagcagcgtacacttctacccatccatgttctagagc Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG cgcaggtgtgttatgcattatccattttctaaaatgacaatgtgttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCAGTGTCCCTCACAAACAAGAGGCCCCCAGGCTTGCCAATAAGgtaagacagtccacagcagcgtacacttctacccatccatgttctagagc Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG cgcaggtgtgttatgcattatccattttctaaaatgacaatgtgttttagCCATGCTGGTAGTGAATTTAGTAGGGCAGGCAGTGTCCCTCACAAACAAGAGGCCCCCAGGCTTGCCAATAAGgtaagacagtccacagcagcgtacacttctacccatccatgttctagagc #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATA-GAGAACTTCCTTGTAGTGAACAAG gcctggcaaagtagagtcctgactgcagctgttgttttgtttctccttagggATCCTTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAATGGAAAAAGTATACAAGAACT-CCTAGTAGTGAACAAAgtaagtttataggatctgcagcttaggcatggtatcttgaatctagctgt Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggcaaagtagagtcctgactgcagctgttgttttgtttctccttagggATCCTTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAATGGAAAAAGTATACAAGAACTCCTAGTAGTGAACAAAgtaagtttataggatctgcagcttaggcatggtatcttgaatctagctgt Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggcaaagtagagtcctgactgcagctgttgttttgtttctccttagGGATCCTTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAATGGAAAAAGTATACAAGAACTCCTAGTAGTGAACAAAgtaagtttataggatctgcagcttaggcatggtatcttgaatctagctgt Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggcaaagtagagtcctgactgcagctgttgttttgtttctccttagGGATCCTTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAATGGAAAAAGTATACAAGAACTCCTAGTAGTGAACAAAgtaagtttataggatctgcagcttaggcatggtatcttgaatctagctgt Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggcaaagtagagtcctgactgcagctgttgttttgtttctccttagGGATCCTTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAATGGAAAAAGTATACAAGAACTCCTAGTAGTGAACAAAgtaagtttataggatctgcagcttaggcatggtatcttgaatctagctgt Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggcaaagtagagtcctgactgcagctgttgttttgtttctccttagGGATCCTTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAATGGAAAAAGTATACAAGAACTCCTAGTAGTGAACAAAgtaagtttataggatctgcagcttaggcatggtatcttgaatctagctgt Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggcaaagtagagtcctgactgcagctgttgttttgtttctccttagGGATCCTTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAATGGAAAAAGTATACAAGAACTCCTAGTAGTGAACAAAgtaagtttataggatctgcagcttaggcatggtatcttgaatctagctgt Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggcaaagtagagtcctgactgcagctgttgttttgtttctccttagGGATCCTTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAATGGAAAAAGTATACAAGAACTCCTAGTAGTGAACAAAgtaagtttataggatctgcagcttaggcatggtatcttgaatctagctgt #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTG-GGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag gcttgcatgcgtgaaaattctacttctgactttgtctatttctctcctagaGTTAATCTTCCACCTAAGCAGGTTTCCCAGGTTACTGTGCGAG---CTCC-TTTCACTGAAACTACTGCCAACAACATGAGCAAGAAAGGTAAACCAAACCCTGACCAGaggtaagcaagctgtatttgccctaatatccctcagacctatggacatgcac Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag gcttgcatgcgtgaaaattctacttctgactttgtctatttctctcctagaGTTAATCTTCCACCTAAGCAGGTTTCCCAGGTTACTGTG---CGAGCTCCTTTCACTGAAACTACTGCCAACAACATGAGCAAGAAAGGTAAACCAAACCCTGACCAGaggtaagcaagctgtatttgccctaatatccctcagacctatggacatgcac Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG gcttgcatgcgtgaaaattctacttctgactttgtctatttctctcctagAGTTAATCTTCCACCTAAGCAGGTTTCCCAGGTTACTGTG---CGAGCTCCTTTCACTGAAACTACTGCCAACAACATGAGCAAGAAAGGTAAACCAAACCCTGACCAGAGgtaagcaagctgtatttgccctaatatccctcagacctatggacatgcac Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG gcttgcatgcgtgaaaattctacttctgactttgtctatttctctcctagAGTTAATCTTCCACCTAAGCAGGTTTCCCAGGTTACTGTGCG--AGCTCC-TTTCACTGAAACTACTGCCAACAACATGAGCAAGAAAGGTAAACCAAACCCTGACCAGAGgtaagcaagctgtatttgccctaatatccctcagacctatggacatgcac Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGT-----------------------CACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG gcttgcatgcgtgaaaattctacttctgactttgtctatttctctcctagAGTTAATCTTCCACCTAAGCAGGTTTCCCAGGTTACTGTGCGAGCTCC--------------------------TTTCACTGAAACTACTGCCAACAACATGAGCAAGAAAGGTAAACCAAACCCTGACCAGAGgtaagcaagctgtatttgccctaatatccctcagacctatggacatgcac Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG gcttgcatgcgtgaaaattctacttctgactttgtctatttctctcctagAGTTAATCTTCCACCTAAGCAGGTTTCCCAGGTTACTGTG---CGAGCTCCTTTCACTGAAACTACTGCCAACAACATGAGCAAGAAAGGTAAACCAAACCCTGACCAGAGgtaagcaagctgtatttgccctaatatccctcagacctatggacatgcac Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG gcttgcatgcgtgaaaattctacttctgactttgtctatttctctcctagAGTTAATCTTCCACCTAAGCAGGTTTCCCAGGTTACTGTG---CGAGCTCCTTTCACTGAAACTACTGCCAACAACATGAGCAAGAAAGGTAAACCAAACCCTGACCAGAGgtaagcaagctgtatttgccctaatatccctcagacctatggacatgcac Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG gcttgcatgcgtgaaaattctacttctgactttgtctatttctctcctagAGTTAATCTTCCACCTAAGCAGGTTTCCCAGGTTACTGTG---CGAGCTCCTTTCACTGAAACTACTGCCAACAACATGAGCAAGAAAGGTAAACCAAACCCTGACCAGAGgtaagcaagctgtatttgccctaatatccctcagacctatggacatgcac #### Myrf_ID2732_6 --> 1 - 1 Original Alignment aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCC-CCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg gc actactgtagtgccgagggggaatgaagtttttttcttttttggatacagaCTACCACCACACCCTTCCAAGAAGAGGAAGCACTCTGAAACACCCCCCCA-CACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTAACAACCTTACCATTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTAAAGGCCCACTCTCACCTGGTACTGGATCTTTGGCTCTCAGTACAGCCCGGGCTCAAACTCCACCTTGGCACCCACCAGGTGCACCCTCTCCTggttagtagaccccatgcagatttagttcacatgggtttcttggggcaggg Alignment from CESAR aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg gc actactgtagtgccgagggggaatgaagtttttttcttttttggatacagaCTACCACCACACCCTTCCAAGAAGAGGAAGCACTCTGAAACACCCCCCCACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTAACAACCTTACCATTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTAAAGGCCCACTCTCACCTGGTACTGGATCTTTGGCTCTCAGTACAGCCCGGGCTCAAACTCCACCTTGGCACCCACCAGGTGCACCCTCTCCTggttagtagaccccatgcagatttagttttcttttccattaaatcccaggg Alignment from Spaln_aa2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG GC actactgtagtgccgagggggaatgaagtttttttcttttttggatacagACTACCACCACACCCTTCCAAGAAGAGGAAGCACTCTGAAACACCCCCCCACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTAACAACCTTACCATTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTAAAGGCCCACTCTCACCTGGTACTGGATCTTTGGCTCTCAGTACAGCCCGGGCTCAAACTCCACCTTGGCACCCACCAGGTGCACCCTCTCCTGgttagtagaccccatgcagatttagttcacatgggtttcttggggcagGG Alignment from Spaln_nt2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG GC actactgtagtgccgagggggaatgaagtttttttcttttttggatacagACTACCACCACACCCTTCCAAGAAGAGGAAGCACTCTGAAACACCCCCCCACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTAACAACCTTACCATTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTAAAGGCCCACTCTCACCTGGTACTGGATCTTTGGCTCTCAGTACAGCCCGGGCTCAAACTCCACCTTGGCACCCACCAGGTGCACCCTCTCCTGgttagtagaccccatgcagatttagttcacatgggtttcttggggcagGG Alignment from Pairagon ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCC------------------------------------------------CAGGC actactgtagtgccgagggggaatgaagtttttttcttttttggatacagACTACCACCACACCCTTCCAAGAAGAGGAAGCACTCTGAAACACCCCCCCACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTAACAACCTTACCATTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTAAAGGCCCACTCTCACCTGGTACTGGATCTTTGGCTCTCAGTACAGCCCGGGCTCAAACTCCACCTTGGCACCCACCAGGTGCACCCTCTCCTGGTTAGTAGACCCCATGCAGATTTAGTTCACATGGGTTTCTTGGGGCAGGG Alignment from Exonerate_protein2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG GC actactgtagtgccgagggggaatgaagtttttttcttttttggatacagACTACCACCACACCCTTCCAAGAAGAGGAAGCACTCTGAAACACCCCCCCACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTAACAACCTTACCATTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTAAAGGCCCACTCTCACCTGGTACTGGATCTTTGGCTCTCAGTACAGCCCGGGCTCAAACTCCACCTTGGCACCCACCAGGTGCACCCTCTCCTGgttagtagaccccatgcagatttagttcacatgggtttcttggggcagGG Alignment from Exonerate_coding2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG GC actactgtagtgccgagggggaatgaagtttttttcttttttggatacagACTACCACCACACCCTTCCAAGAAGAGGAAGCACTCTGAAACACCCCCCCACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTAACAACCTTACCATTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTAAAGGCCCACTCTCACCTGGTACTGGATCTTTGGCTCTCAGTACAGCCCGGGCTCAAACTCCACCTTGGCACCCACCAGGTGCACCCTCTCCTGgttagtagaccccatgcagatttagttcacatgggtttcttggggcagGG Alignment from GeneWise ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG GC actactgtagtgccgagggggaatgaagtttttttcttttttggatacagACTACCACCACACCCTTCCAAGAAGAGGAAGCACTCTGAAACACCCCCCCACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTAACAACCTTACCATTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTAAAGGCCCACTCTCACCTGGTACTGGATCTTTGGCTCTCAGTACAGCCCGGGCTCAAACTCCACCTTGGCACCCACCAGGTGCACCCTCTCCTGgttagtagaccccatgcagatttagttcacatgggtttcttggggcagGG #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCC-TATCAGTTCTTCCGAGAGGCACTGca gcaaagagactgaccatgtctgtgggtgtttgaaccttctcttttcatagcACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGT-TTTCCATGAGACACTTcagtatgtaagagaggttcaacatctcaaaatttagttaggatacaaagggc Alignment from CESAR cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca gcaaagagactgaccatgtctgtgggtgtttgaaccttctcttttcatagcACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTTTCCATGAGACACTTcagtatgtaagagaggttcaacatctcaaaatttagttaggatacaaagggc Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA gcaaagagactgaccatgtctgtgggtgtttgaaccttctcttttcatagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTTTCCATGAGACACTTCAgtatgtaagagaggttcaacatctcaaaatttagttaggatacaaagggc Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCC-TATCAGTTCTTCCGAGAGGCACTGCA gcaaagagactgaccatgtctgtgggtgtttgaaccttctcttttcatagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTT-TTCCATGAGACACTTCAgtatgtaagagaggttcaacatctcaaaatttagttaggatacaaagggc Alignment from Pairagon CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCG-CCTATCAGTTCTTCCGAGAGGCACTGCA gcaaagagactgaccatgtctgtgggtgtttgaaccttctcttttcatagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTT-TTCCATGAGACACTTCAgtatgtaagagaggttcaacatctcaaaatttagttaggatacaaagggc Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA gcaaagagactgaccatgtctgtgggtgtttgaaccttctcttttcatagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTTTCCATGAGACACTTCAgtatgtaagagaggttcaacatctcaaaatttagttaggatacaaagggc Alignment from Exonerate_coding2genome gcaaagagactgaccatgtctgtgggtgtttgaaccttctcttttcatagcacacagagaaagaaagttatgttaactgtgttcaaacacaatcatgatgccctaccagttttccatgagacacttcagtatgtaagagaggttcaacatctcaaaatttagttaggatacaaagggc Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA gcaaagagactgaccatgtctgtgggtgtttgaaccttctcttttcatagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTTTCCATGAGACACTTCAgtatgtaagagaggttcaacatctcaaaatttagttaggatacaaagggc #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAG-TTCCTCATTCAGATCCTGCAGCTCATGGCCAACag ttacatgtctccattgtgtccaggtactatgtctttgcgatttttcttagcTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGCCTAGAGAAGCTTTC-CATTCAGATTCTCCAGCTAATGGCCAATaggtatttagcatcttggaagatttgaattgctggaggttggacctgagaat Alignment from CESAR cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag ttacatgtctccattgtgtccaggtactatgtctttgcgatttttcttagcTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGCCTAGAGAAGCTTTCCATTCAGATTCTCCAGCTAATGGCCAATaggtatttagcatcttggaagatttgaattgctggaggttggacctgagaat Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG ttacatgtctccattgtgtccaggtactatgtctttgcgatttttcttagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGCCTAGAGAAGCTTTCCATTCAGATTCTCCAGCTAATGGCCAATAGgtatttagcatcttggaagatttgaattgctggaggttggacctgagaat Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG ttacatgtctccattgtgtccaggtactatgtctttgcgatttttcttagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGCCTAGAGAAGCTTTCCATTCAGATTCTCCAGCTAATGGCCAATAGgtatttagcatcttggaagatttgaattgctggaggttggacctgagaat Alignment from Pairagon CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG ttacatgtctccattgtgtccaggtactatgtctttgcgatttttcttagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGCCTAGAGAAGCTTTCCATTCAGATTCTCCAGCTAATGGCCAATAGgtatttagcatcttggaagatttgaattgctggaggttggacctgagaat Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG ttacatgtctccattgtgtccaggtactatgtctttgcgatttttcttagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGCCTAGAGAAGCTTTCCATTCAGATTCTCCAGCTAATGGCCAATAGgtatttagcatcttggaagatttgaattgctggaggttggacctgagaat Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG ttacatgtctccattgtgtccaggtactatgtctttgcgatttttcttagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGCCTAGAGAAGCTTTCCATTCAGATTCTCCAGCTAATGGCCAATAGgtatttagcatcttggaagatttgaattgctggaggttggacctgagaat Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG ttacatgtctccattgtgtccaggtactatgtctttgcgatttttcttagCTACGAAGTACAGCTAGAAAGCAAGGTAAGGCAGAAAGGCCTAGAGAAGCTTTCCATTCAGATTCTCCAGCTAATGGCCAATAGgtatttagcatcttggaagatttgaattgctggaggttggacctgagaat #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACC-TCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattggagctaatcacaaatcctgtcatcacgattgtctcttgtctgcagtAACCTCACAGGAACTCTCTGCCC-TACTTTCTGGCAGAGAGCTCTAGGCTGTGAATATAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtgggtcacggagctgagtgcccttgagtgggcccccagaatcattgtcc Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattggagctaatcacaaatcctgtcatcacgattgtctcttgtctgcagtAACCTCACAGGAACTCTCTGCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATATAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtgggtcacggagctgagtgcccttgagtgggcccccagaatcattgtcc Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaatcctgtcatcacgattgtctcttgtctgcagTAACCTCACAGGAACTCTCTGCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATATAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgggtcacggagctgagtgcccttgagtgggcccccagaatcattgtcc Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaatcctgtcatcacgattgtctcttgtctgcagTAACCTCACAGGAACTCTCTGCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATATAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgggtcacggagctgagtgcccttgagtgggcccccagaatcattgtcc Alignment from Pairagon TAACCTCACCGGAAC-CTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaatcctgtcatcacgattgtctcttgtctgcagTAACCTCACAGGAACTCTCTG-CCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATATAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgggtcacggagctgagtgcccttgagtgggcccccagaatcattgtcc Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaatcctgtcatcacgattgtctcttgtctgcagTAACCTCACAGGAACTCTCTGCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATATAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgggtcacggagctgagtgcccttgagtgggcccccagaatcattgtcc Alignment from Exonerate_coding2genome aattggagctaatcacaaatcctgtcatcacgattgtctcttgtctgcagtaacctcacaggaactctctgccctactttctggcagagagctctaggctgtgaatataagctaggtcctgggtttgagccaaatgaaagtttccctgatggaaggtgggtcacggagctgagtgcccttgagtgggcccccagaatcattgtcc Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattggagctaatcacaaatcctgtcatcacgattgtctcttgtctgcagTAACCTCACAGGAACTCTCTGCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATATAAGCTAGGTCCTGGGTTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtgggtcacggagctgagtgcccttgagtgggcccccagaatcattgtcc #### Naaladl1_ID1448_7 --> 1 - 1 Original Alignment tGAGGTGAAAGTG-AGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagtGACATCAGAGTGCCGTGTTC-CAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTggtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from CESAR tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagtGACATCAGAGTGCCGTGTTCCAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTggtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Spaln_aa2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagTGACATCAGAGTGCCGTGTTCCAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Spaln_nt2Genome TGAGGTGAAAGTGA-GTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagTGACATCAGAGTGCCGTGTTC-CAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Pairagon TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAAT----------GTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagtgacatcagagtgccgtgttccaacagattagaacttag-------------------------------------------------AATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Exonerate_protein2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagTGACATCAGAGTGCCGTGTTCCAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Exonerate_coding2genome ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagtgacatcagagtgccgtgttccaacagattagaacttagaatttccactaacgtgcttggcatcatccaaggcagtgtagagcctggtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from GeneWise TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagTGACATCAGAGTGCCGTGTTCCAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGAC-AGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatttggcctctatcctgtgccttatttctgcaggcTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATCAGCC-CTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGGCAGCGCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGggtgagtcccaacatcttgagactgtgtataattttctttctcctttagga Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatttggcctctatcctgtgccttatttctgcaggcTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATCAGCCCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGGCAGCGCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGggtgagtcccaacatcttgagactgtggtttctgtgctcttccccgcagga Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatttggcctctatcctgtgccttatttctgcagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATCAGCCCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGGCAGCGCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtgagtcccaacatcttgagactgtgtataattttctttctcctttagGA Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatttggcctctatcctgtgccttatttctgcagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATCAGCCCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGGCAGCGCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtgagtcccaacatcttgagactgtgtataattttctttctcctttagGA Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatttggcctctatcctgtgccttatttctgcagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATCAGCCCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGGCAGCGCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtgagtcccaacatcttgagactgtgtataattttctttctcctttagGA Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatttggcctctatcctgtgccttatttctgcagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATCAGCCCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGGCAGCGCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtgagtcccaacatcttgagactgtgtataattttctttctcctttagGA Alignment from Exonerate_coding2genome atgaaggtgaaacttggatttggcctctatcctgtgccttatttctgcaggctttagtagccagcaggctgttgcccggactgctgggagtgtgcttctccagctcagtgatcagcccttcctgcccctaaatgttagtgactatagtgagaccttacaaagtttccttcaggcagcgcaagaagccctaggtacccaattagaaaagcagaatgtaagcttgggtgagtcccaacatcttgagactgtgtataattttctttctcctttagga Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGC------------------------------------------------CTGGGG atgaaggtgaaacttggatttggcctctatcctgtgccttatttctgcagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATCAGCCCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAAGTTTCCTTCAGGCAGCGCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGGTGAGTCCCAACATCTTGAGACTGTGTATAATTTTCTTTCTCCTTTAGGA #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAG-GAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATT---CTGATGTGGACAGAACTCATCCGAg gattctaacgattaatctccttgttgctaccctactcactgtccttacagagTATGTAAACAAAAAACGAGCAAG-GGCAGAAGTAGACATGAAGGCAGGT---GACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGggtaaagtccaatgcaggatcgtaaggtgaaaatttaagactagtctggtg Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAg gattctaacgattaatctccttgttgctaccctactcactgtccttacagagTATGTAAACAAAAAACGAGCAAGGGCAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGggtaaagtccaatgcaggatcgtaaggtgaaaatttaagactagtctggtg Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG gattctaacgattaatctccttgttgctaccctactcactgtccttacagAGTATGTAAACAAAAAACGAGCAAGGGCAGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaaagtccaatgcaggatcgtaaggtgaaaatttaagactagtctggtg Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAG-GAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG gattctaacgattaatctccttgttgctaccctactcactgtccttacagAGTATGTAAACAAAAAACGAGCAAG-GGCAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaaagtccaatgcaggatcgtaaggtgaaaatttaagactagtctggtg Alignment from Pairagon AGTATGTGAATA----------------AGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTC---TGATGTGGACAGAACTCATCCGAG gattctaacgattaatctccttgttgctaccctactcactgtccttacagAGTATGTAAACAAAAAACGAGCAAGGGCAGAA----------------GTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaaagtccaatgcaggatcgtaaggtgaaaatttaagactagtctggtg Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG gattctaacgattaatctccttgttgctaccctactcactgtccttacagAGTATGTAAACAAAAAACGAGCAAGGGCAGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaaagtccaatgcaggatcgtaaggtgaaaatttaagactagtctggtg Alignment from Exonerate_coding2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG gattctaacgattaatctccttgttgctaccctactcactgtccttacagAGTATGTAAACAAAAAACGAGCAAGGGCAGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaaagtccaatgcaggatcgtaaggtgaaaatttaagactagtctggtg Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG gattctaacgattaatctccttgttgctaccctactcactgtccttacagAGTATGTAAACAAAAAACGAGCAAGGGCAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaaagtccaatgcaggatcgtaaggtgaaaatttaagactagtctggtg #### Ndufv1_ID277_5 --> 0 - 1 Original Alignment GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTAT-GATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGg ctgtgtgactgagtaatgtagggctcggcgtcccgtgcctgggcccgcagGTAGCTATCCGAGGTGCCTATGAAGCAGTTCTGATTGGCAAGAATGCTTGTGGCTCTGACTATCGATTTTG-TGTGTTTCTGGTACGTGGTGCAGGTGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCATGCCTGAAGCCGCCCTTCCCAGCAGATGTGggttagtcatctggtgtcctagttctcttctgacagcccctgcccccatct Alignment from CESAR GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGg ctgtgtgactgagtaatgtagggctcggcgtcccgtgcctgggcccgcagGTAGCTATCCGAGGTGCCTATGAAGCAGTTCTGATTGGCAAGAATGCTTGTGGCTCTGACTATCGATTTTGTGTGTTTCTGGTACGTGGTGCAGGTGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCATGCCTGAAGCCGCCCTTCCCAGCAGATGTGggttagtcatctggtgtcctagttctcttctgacagcccctgcccccatct Alignment from Spaln_aa2Genome GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG ctgtgtgactgagtaatgtagggctcggcgtcccgtgcctgggcccgcagGTAGCTATCCGAGGTGCCTATGAAGCAGTTCTGATTGGCAAGAATGCTTGTGGCTCTGACTATCGATTTTGTGTGTTTCTGGTACGTGGTGCAGGTGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCATGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgttagtcatctggtgtcctagttctcttctgacagcccctgcccccatct Alignment from Spaln_nt2Genome GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG ctgtgtgactgagtaatgtagggctcggcgtcccgtgcctgggcccgcagGTAGCTATCCGAGGTGCCTATGAAGCAGTTCTGATTGGCAAGAATGCTTGTGGCTCTGACTATCGATTTTGTGTGTTTCTGGTACGTGGTGCAGGTGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCATGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgttagtcatctggtgtcctagttctcttctgacagcccctgcccccatct Alignment from Pairagon GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTAT-GATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG ctgtgtgactgagtaatgtagggctcggcgtcccgtgcctgggcccgcagGTAGCTATCCGAGGTGCCTATGAAGCAGTTCTGATTGGCAAGAATGCTTGTGGCTCTGACTATCGATTTTG-TGTGTTTCTGGTACGTGGTGCAGGTGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCATGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgttagtcatctggtgtcctagttctcttctgacagcccctgcccccatct Alignment from Exonerate_protein2genome GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG ctgtgtgactgagtaatgtagggctcggcgtcccgtgcctgggcccgcagGTAGCTATCCGAGGTGCCTATGAAGCAGTTCTGATTGGCAAGAATGCTTGTGGCTCTGACTATCGATTTTGTGTGTTTCTGGTACGTGGTGCAGGTGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCATGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgttagtcatctggtgtcctagttctcttctgacagcccctgcccccatct Alignment from Exonerate_coding2genome GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG ctgtgtgactgagtaatgtagggctcggcgtcccgtgcctgggcccgcagGTAGCTATCCGAGGTGCCTATGAAGCAGTTCTGATTGGCAAGAATGCTTGTGGCTCTGACTATCGATTTTGTGTGTTTCTGGTACGTGGTGCAGGTGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCATGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgttagtcatctggtgtcctagttctcttctgacagcccctgcccccatct Alignment from GeneWise GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG ctgtgtgactgagtaatgtagggctcggcgtcccgtgcctgggcccgcagGTAGCTATCCGAGGTGCCTATGAAGCAGTTCTGATTGGCAAGAATGCTTGTGGCTCTGACTATCGATTTTGTGTGTTTCTGGTACGTGGTGCAGGTGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCATGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgttagtcatctggtgtcctagttctcttctgacagcccctgcccccatct #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGTGAAGGC-CCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggtagtttgcttcacctgctcattgtaaatgtgccttcctctttcacagAGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCT-CCATGGTGGCTTGCCAGGTGCATCCAGTGAGAAGGGCCGGAAGAGCTATCCCACTGTAAAAgtaagtacaggtgccacagctgcttcatgcatagacctgtggggcactca Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggtagtttgcttcacctgctcattgtaaatgtgccttcctctttcacagAGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCATGGTGGCTTGCCAGGTGCATCCAGTGAGAAGGGCCGGAAGAGCTATCCCACTGTAAAAgtaagtacaggtgccacagctgcttcatgcatagacctgtggggcactca Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggtagtttgcttcacctgctcattgtaaatgtgccttcctctttcacagAGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCATGGTGGCTTGCCAGGTGCATCCAGTGAGAAGGGCCGGAAGAGCTATCCCACTGTAAAAgtaagtacaggtgccacagctgcttcatgcatagacctgtggggcactca Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggtagtttgcttcacctgctcattgtaaatgtgccttcctctttcacagAGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCATGGTGGCTTGCCAGGTGCATCCAGTGAGAAGGGCCGGAAGAGCTATCCCACTGTAAAAgtaagtacaggtgccacagctgcttcatgcatagacctgtggggcactca Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggtagtttgcttcacctgctcattgtaaatgtgccttcctctttcacagAGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCATGGTGGCTTGCCAGGTGCATCCAGTGAGAAGGGCCGGAAGAGCTATCCCACTGTAAAAgtaagtacaggtgccacagctgcttcatgcatagacctgtggggcactca Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggtagtttgcttcacctgctcattgtaaatgtgccttcctctttcacagAGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCATGGTGGCTTGCCAGGTGCATCCAGTGAGAAGGGCCGGAAGAGCTATCCCACTGTAAAAgtaagtacaggtgccacagctgcttcatgcatagacctgtggggcactca Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggtagtttgcttcacctgctcattgtaaatgtgccttcctctttcacagAGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCATGGTGGCTTGCCAGGTGCATCCAGTGAGAAGGGCCGGAAGAGCTATCCCACTGTAAAAgtaagtacaggtgccacagctgcttcatgcatagacctgtggggcactca Alignment from GeneWise CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggtagtttgcttcacctgctcattgtaaatgtgccttcctctttcacagAGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCATGGTGGCTTGCCAGGTGCATCCAGTGAGAAGGGCCGGAAGAGCTATCCCACTGTAAAAgtaagtacaggtgccacagctgcttcatgcatagacctgtggggcactca #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGT-GCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gacctgtggggcactcaacaatatagaaccctcaccacctgtcttctcagATATGTAACTATGAGGGACCCACAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTCGCAC-TGCCCACAGTCTGGCGGGCAAGCAGTGTTCAGAACTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTcagtgagtcacttatcagtcttggagttgatccaaaggatatctggatatcc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gacctgtggggcactcaacaatatagaaccctcaccacctgtcttctcagATATGTAACTATGAGGGACCCACAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTCGCACTGCCCACAGTCTGGCGGGCAAGCAGTGTTCAGAACTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTcagtgagtcacttatcagtcttggagttgatccaaaggatatctggatatcc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gacctgtggggcactcaacaatatagaaccctcaccacctgtcttctcagATATGTAACTATGAGGGACCCACAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTCGCACTGCCCACAGTCTGGCGGGCAAGCAGTGTTCAGAACTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcacttatcagtcttggagttgatccaaaggatatctggatatcc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gacctgtggggcactcaacaatatagaaccctcaccacctgtcttctcagATATGTAACTATGAGGGACCCACAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTCGCACTGCCCACAGTCTGGCGGGCAAGCAGTGTTCAGAACTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcacttatcagtcttggagttgatccaaaggatatctggatatcc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCA-TGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gacctgtggggcactcaacaatatagaaccctcaccacctgtcttctcagATATGTAACTATGAGGGACCCACAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGT-CGCACTGCCCACAGTCTGGCGGGCAAGCAGTGTTCAGAACTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcacttatcagtcttggagttgatccaaaggatatctggatatcc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gacctgtggggcactcaacaatatagaaccctcaccacctgtcttctcagATATGTAACTATGAGGGACCCACAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTCGCACTGCCCACAGTCTGGCGGGCAAGCAGTGTTCAGAACTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcacttatcagtcttggagttgatccaaaggatatctggatatcc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gacctgtggggcactcaacaatatagaaccctcaccacctgtcttctcagATATGTAACTATGAGGGACCCACAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTCGCACTGCCCACAGTCTGGCGGGCAAGCAGTGTTCAGAACTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcacttatcagtcttggagttgatccaaaggatatctggatatcc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gacctgtggggcactcaacaatatagaaccctcaccacctgtcttctcagATATGTAACTATGAGGGACCCACAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTCGCACTGCCCACAGTCTGGCGGGCAAGCAGTGTTCAGAACTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcacttatcagtcttggagttgatccaaaggatatctggatatcc #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCG-AACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagaaTCTTCAGGGGCCTTGCAATTTGA-GATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGggtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from CESAR agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagaaTCTTCAGGGGCCTTGCAATTTGAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGggtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGCAATTTGAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGCAATTTGAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Pairagon AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGCAATTTGAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGCAATTTGAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGCAATTTGAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGCAATTTGAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGGTTCTATGAGGATGATGAG-AATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cacctgcccctgtccctccatatcactgcatttgaaaactttgctactagatGACATCGAGGTTCAATTCTATGAGGATGATGAGCAATGGGT-GCAAGCCTTTGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaagacaacaacaacataattcatattccctgtggttagtacaggtaca Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG---CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cacctgcccctgtccctccatatcactgcatttgaaaactttgctactagatGACATCGAGGTTCAATTCTATGAGGATGATGAGCAA---TGGGTGCAAGCCTTTGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaagacaacaacaacataattcatattccctgtggttagtacaggtaca Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cacctgcccctgtccctccatatcactgcatttgaaaactttgctactagATGACATCGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGCAAGCCTTTGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaagacaacaacaacataattcatattccctgtggttagtacaggtaca Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cacctgcccctgtccctccatatcactgcatttgaaaactttgctactagATGACATCGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGCAAGCCTTTGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaagacaacaacaacataattcatattccctgtggttagtacaggtaca Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGATGAG-AATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cacctgcccctgtccctccatatcactgcatttgaaaactttgctactagATGACATCGAGGTTCAATTCTATGAGGATGATGAGCAATGGGT-GCAAGCCTTTGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaagacaacaacaacataattcatattccctgtggttagtacaggtaca Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cacctgcccctgtccctccatatcactgcatttgaaaactttgctactagATGACATCGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGCAAGCCTTTGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaagacaacaacaacataattcatattccctgtggttagtacaggtaca Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cacctgcccctgtccctccatatcactgcatttgaaaactttgctactagATGACATCGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGCAAGCCTTTGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaagacaacaacaacataattcatattccctgtggttagtacaggtaca Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cacctgcccctgtccctccatatcactgcatttgaaaactttgctactagATGACATCGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGCAAGCCTTTGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaagacaacaacaacataattcatattccctgtggttagtacaggtaca #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGT-GGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gtacatgcttgtatttattaagcctcaaactagtgattgtgtctttacagacAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTCGGAC-CTTTGGCGGGTCTGCAGGGGGTTATGGAGATGCTGGAGGAagtgatgaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gtacatgcttgtatttattaagcctcaaactagtgattgtgtctttacagacAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTCGGACCTTTGGCGGGTCTGCAGGGGGTTATGGAGATGCTGGAGGAagtgatgaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gtacatgcttgtatttattaagcctcaaactagtgattgtgtctttacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTCGGACCTTTGGCGGGTCTGCAGGGGGTTATGGAGATGCTGGAGGAAgtgatgaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gtacatgcttgtatttattaagcctcaaactagtgattgtgtctttacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTCGGACCTTTGGCGGGTCTGCAGGGGGTTATGGAGATGCTGGAGGAAgtgatgaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGG---------------------------------------------------- gtacatgcttgtatttattaagcctcaaactagtgattgtgtctttacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTCGGACCTTTGGCGGGTCTGCAGGGGGTTATGGAGATGCTGGAGGAAGTGATGAAGAAAAATGGAAGGAGAAAGAAAGAAGATTAGTTGATGATATT Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gtacatgcttgtatttattaagcctcaaactagtgattgtgtctttacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTCGGACCTTTGGCGGGTCTGCAGGGGGTTATGGAGATGCTGGAGGAAgtgatgaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gtacatgcttgtatttattaagcctcaaactagtgattgtgtctttacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTCGGACCTTTGGCGGGTCTGCAGGGGGTTATGGAGATGCTGGAGGAAgtgatgaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gtacatgcttgtatttattaagcctcaaactagtgattgtgtctttacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTGCCTACTTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTCGGACCTTTGGCGGGTCTGCAGGGGGTTATGGAGATGCTGGAGGAAgtgatgaagaaaaatggaaggagaaagaaagaagattagttgatgatatt #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCC-CCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tattgcctttgtaaggaccctgataagacactgttgtgtgtttccttcaggtGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTATCAACCAGGTGCTTCCCCCATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAAATGGCCGGTTCTAGACGTGACACTGATGCTGGTGAAGGTCCTAAGGAGCCCAGGACACCCCCCAG-GGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCATCGAagtaagtgttggcacgaattcacacatgctattgaaagtgcaacgcaggat Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tattgcctttgtaaggaccctgataagacactgttgtgtgtttccttcaggtGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTATCAACCAGGTGCTTCCCCCATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAAATGGCCGGTTCTAGACGTGACACTGATGCTGGTGAAGGTCCTAAGGAGCCCAGGACACCCCCCAGGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCATCGAagtaagtgttggcacgaattcacacatgctattgaaagtgcaacgcaggat Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccctgataagacactgttgtgtgtttccttcagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTATCAACCAGGTGCTTCCCCCATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAAATGGCCGGTTCTAGACGTGACACTGATGCTGGTGAAGGTCCTAAGGAGCCCAGGACACCCCCCAGGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCATCGAAgtaagtgttggcacgaattcacacatgctattgaaagtgcaacgcaggat Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccctgataagacactgttgtgtgtttccttcagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTATCAACCAGGTGCTTCCCCCATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAAATGGCCGGTTCTAGACGTGACACTGATGCTGGTGAAGGTCCTAAGGAGCCCAGGACACCCCCCAGGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCATCGAAgtaagtgttggcacgaattcacacatgctattgaaagtgcaacgcaggat Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccctgataagacactgttgtgtgtttccttcagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTATCAACCAGGTGCTTCCCCCATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAAATGGCCGGTTCTAGACGTGACACTGATGCTGGTGAAGGTCCTAAGGAGCCCAGGACACCCCCCAGGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCATCGAAgtaagtgttggcacgaattcacacatgctattgaaagtgcaacgcaggat Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccctgataagacactgttgtgtgtttccttcagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTATCAACCAGGTGCTTCCCCCATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAAATGGCCGGTTCTAGACGTGACACTGATGCTGGTGAAGGTCCTAAGGAGCCCAGGACACCCCCCAGGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCATCGAAgtaagtgttggcacgaattcacacatgctattgaaagtgcaacgcaggat Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccctgataagacactgttgtgtgtttccttcagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTATCAACCAGGTGCTTCCCCCATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAAATGGCCGGTTCTAGACGTGACACTGATGCTGGTGAAGGTCCTAAGGAGCCCAGGACACCCCCCAGGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCATCGAAgtaagtgttggcacgaattcacacatgctattgaaagtgcaacgcaggat Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccctgataagacactgttgtgtgtttccttcagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTATCAACCAGGTGCTTCCCCCATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAAATGGCCGGTTCTAGACGTGACACTGATGCTGGTGAAGGTCCTAAGGAGCCCAGGACACCCCCCAGGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCATCGAAgtaagtgttggcacgaattcacacatgctattgaaagtgcaacgcaggat #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGT---GCTGCA-GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACACGAA---TCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAGGAGCTCAGGGCAGGAGCAGCAGCTCGCCCCTG-GTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGggtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCC---CCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAGGAGCTCAGGGCAGGAGCAGCAGCTCGCCCCTGGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGggtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCC---CCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccatcttggacctctcagGAGCTCAGGGCAGGAGCAGCAGCTCGCCCCTGGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGC---CCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccatcttggacctctcagGAGCTCAGGGCAGGAGCAGCAGCTCGCCCCTGGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGC---CCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACACGAA---TCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAGGAGCTCAGGGCAGGAGCAGCAGCTCGCCCCTGGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCC---CCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccatcttggacctctcagGAGCTCAGGGCAGGAGCAGCAGCTCGCCCCTGGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCC---CCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccatcttggacctctcagGAGCTCAGGGCAGGAGCAGCAGCTCGCCCCTGGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCC---CCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAGGAGCTCAGGGCAGGAGCAGCAGCTCGCCCCTGGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAAT-GCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gatttgcttgtttgtgaccagactctgtagacgtccccctctctctgcagCTGCATGCCAATGTCAATCACTTGGA-CTTTGCTGCAAATACACCACTCCACCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtgagtcctccattaacctgtgactacaaaactcaaggcttggggagcaa Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gatttgcttgtttgtgaccagactctgtagacgtccccctctctctgcagCTGCATGCCAATGTCAATCACTTGGACTTTGCTGCAAATACACCACTCCACCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtgagtcctccattaacctgtgactacaaaactcaaggcttggggagcaa Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttgcttgtttgtgaccagactctgtagacgtccccctctctctgcagCTGCATGCCAATGTCAATCACTTGGACTTTGCTGCAAATACACCACTCCACCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtgagtcctccattaacctgtgactacaaaactcaaggcttggggagcaa Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttgcttgtttgtgaccagactctgtagacgtccccctctctctgcagCTGCATGCCAATGTCAATCACTTGGACTTTGCTGCAAATACACCACTCCACCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtgagtcctccattaacctgtgactacaaaactcaaggcttggggagcaa Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttgcttgtttgtgaccagactctgtagacgtccccctctctctgcagCTGCATGCCAATGTCAATCACTTGGACTTTGCTGCAAATACACCACTCCACCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtgagtcctccattaacctgtgactacaaaactcaaggcttggggagcaa Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttgcttgtttgtgaccagactctgtagacgtccccctctctctgcagCTGCATGCCAATGTCAATCACTTGGACTTTGCTGCAAATACACCACTCCACCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtgagtcctccattaacctgtgactacaaaactcaaggcttggggagcaa Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttgcttgtttgtgaccagactctgtagacgtccccctctctctgcagCTGCATGCCAATGTCAATCACTTGGACTTTGCTGCAAATACACCACTCCACCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtgagtcctccattaacctgtgactacaaaactcaaggcttggggagcaa Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttgcttgtttgtgaccagactctgtagacgtccccctctctctgcagCTGCATGCCAATGTCAATCACTTGGACTTTGCTGCAAATACACCACTCCACCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtgagtcctccattaacctgtgactacaaaactcaaggcttggggagcaa #### Nmrk1_ID4439_5 --> 1 - 2 Original Alignment gCCTCTGGACACCATATGGAACAGAAGTTACTTC-CTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag gggataggggagcaacactagtttgtaagcctttcctatctcgtgtgcagaCTTTTGGATACGATATGGAATAGGAGTTACTGCCCTGAGTG-TCAATATGACCAATGCAAGAGAGGAAGGaggtgagtttggagactgactgtggattgtaagccggattatttccctcgcg Alignment from CESAR gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag gggataggggagcaacactagtttgtaagcctttcctatctcgtgtgcagaCTTTTGGATACGATATGGAATAGGAGTTACTGCCCTGAGTGTCAATATGACCAATGCAAGAGAGGAAGGaggtgagtttggagactgactgtggattgtaagccggattatttccctcgcg Alignment from Spaln_aa2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggataggggagcaacactagtttgtaagcctttcctatctcgtgtgcagACTTTTGGATACGATATGGAATAGGAGTTACTGCCCTGAGTGTCAATATGACCAATGCAAGAGAGGAAGGAGgtgagtttggagactgactgtggattgtaagccggattatttccctcgcg Alignment from Spaln_nt2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCC-TGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggataggggagcaacactagtttgtaagcctttcctatctcgtgtgcagACTTTTGGATACGATATGGAATAGGAGTTACTGCCCTGAGTG-TCAATATGACCAATGCAAGAGAGGAAGGAGgtgagtttggagactgactgtggattgtaagccggattatttccctcgcg Alignment from Pairagon GCCTCTGGACACCATATGGAACAGAAGTTACTTCC-------------TGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggataggggagcaacactagtttgtaagcctttcctatctcgtgtgcagACTTTTGGATACGATATGGAATAGGAGTTACTGCCCTGAGTGTCAATATGACC-------------AATGCAAGAGAGGAAGGAGgtgagtttggagactgactgtggattgtaagccggattatttccctcgcg Alignment from Exonerate_protein2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggataggggagcaacactagtttgtaagcctttcctatctcgtgtgcagACTTTTGGATACGATATGGAATAGGAGTTACTGCCCTGAGTGTCAATATGACCAATGCAAGAGAGGAAGGAGgtgagtttggagactgactgtggattgtaagccggattatttccctcgcg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gggataggggagcaacactagtttgtaagcctttcctatctcgtgtgcagACTTTTGGATACGATATGGAATAGGAGTTACTGCCCTGAGTGTCAATATGACCAATGCAAGAGAGGAAGGAGgtgagtttggagactgactgtggattgtaagccggattatttccctcgcg #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGC-CCTTTTACTGCCAATAACTACCCTATCag gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagttGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCCTT-TGCTGCCAATAATTATCCTAATaggtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagttGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCCTTTGCTGCCAATAATTATCCTAATaggtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCCTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCCTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCCTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCCTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCCTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCCTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa #### Npas4_ID776_5 --> 1 - 1 Original Alignment tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTA-CACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt gggagcaagaggctatatgcagtgtgactaaaactgtttttctcctatagtGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACCACCCTG-GGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGcgtatgttttaatattgagtaggtcattgcagtaatctcataaattacata Alignment from CESAR tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt gggagcaagaggctatatgcagtgtgactaaaactgtttttctcctatagtGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACCACCCTGGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGcgtatgttttaatattgagtaggtcattgcagtaatctcataaattacata Alignment from Spaln_aa2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggagcaagaggctatatgcagtgtgactaaaactgtttttctcctatagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACCACCCTGGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtatgttttaatattgagtaggtcattgcagtaatctcataaattacata Alignment from Spaln_nt2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggagcaagaggctatatgcagtgtgactaaaactgtttttctcctatagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACCACCCTGGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtatgttttaatattgagtaggtcattgcagtaatctcataaattacata Alignment from Pairagon TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggagcaagaggctatatgcagtgtgactaaaactgtttttctcctatagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACCACCCTGGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtatgttttaatattgagtaggtcattgcagtaatctcataaattacata Alignment from Exonerate_protein2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggagcaagaggctatatgcagtgtgactaaaactgtttttctcctatagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACCACCCTGGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtatgttttaatattgagtaggtcattgcagtaatctcataaattacata Alignment from Exonerate_coding2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggagcaagaggctatatgcagtgtgactaaaactgtttttctcctatagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACCACCCTGGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtatgttttaatattgagtaggtcattgcagtaatctcataaattacata Alignment from GeneWise TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggagcaagaggctatatgcagtgtgactaaaactgtttttctcctatagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACCACCCTGGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtatgttttaatattgagtaggtcattgcagtaatctcataaattacata #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGC-GACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGACGTCAGTATCT-CGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAggtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGACGTCAGTATCTCGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAggtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGACGTCAGTATCTCGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGG-CGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGACGTCAGTATCT-CGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Pairagon GTGGACCTGGTTGCCCAGGG-CGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGACGTCAGTATCT-CGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGACGTCAGTATCTCGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGACGTCAGTATCTCGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGACGTCAGTATCTCGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGAT-GACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtttaggatgtacctaggaggtagtgtgtctgctctccctgcaggtTGTGAGCTCTCTGATCACACACGTTCATTCACCTTCAATGTTGCGGAGGAAGATCGACACGGAGC-GGTGCTTGCATTGAACATGgtaagcggtacagaaaaattcagttcagcacacccctggtcttatctttc Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGAT-GACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtttaggatgtacctaggaggtagtgtgtctgctctccctgcaggtTGTGAGCTCTCTGATCACACACGTTCATTCACCTTCAATGTTGCGGAGGAAGATCGACACGGAG-CGGTGCTTGCATTGAACATGgtaagcggtacagaaaaattcagttcagcacacccctggtcttatctttc Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtttaggatgtacctaggaggtagtgtgtctgctctccctgcagGTTGTGAGCTCTCTGATCACACACGTTCATTCACCTTCAATGTTGCGGAGGAAGATCGACACGGAGCGGTGCTTGCATTGAACATGgtaagcggtacagaaaaattcagttcagcacacccctggtcttatctttc Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGAT-GACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtttaggatgtacctaggaggtagtgtgtctgctctccctgcagGTTGTGAGCTCTCTGATCACACACGTTCATTCACCTTCAATGTTGCGGAGGAAGATCGACACGGAGC-GGTGCTTGCATTGAACATGgtaagcggtacagaaaaattcagttcagcacacccctggtcttatctttc Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGAT-GACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtttaggatgtacctaggaggtagtgtgtctgctctccctgcagGTTGTGAGCTCTCTGATCACACACGTTCATTCACCTTCAATGTTGCGGAGGAAGATCGACACGGAGC-GGTGCTTGCATTGAACATGgtaagcggtacagaaaaattcagttcagcacacccctggtcttatctttc Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtttaggatgtacctaggaggtagtgtgtctgctctccctgcagGTTGTGAGCTCTCTGATCACACACGTTCATTCACCTTCAATGTTGCGGAGGAAGATCGACACGGAGCGGTGCTTGCATTGAACATGgtaagcggtacagaaaaattcagttcagcacacccctggtcttatctttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttggtttaggatgtacctaggaggtagtgtgtctgctctccctgcagGTTGTGAGCTCTCTGATCACACACGTTCATTCACCTTCAATGTTGCGGAGGAAGATCGACACGGAGCGGTGCTTGCATTGAACATGgtaagcggtacagaaaaattcagttcagcacacccctggtcttatctttc #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGC-TATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCCTATGGCATGA-GGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCCTATGGCATGAGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCCTATGGCATGAGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCCTATGGCATGAGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTG-CTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCCTATGGCATGA-GGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCCTATGGCATGAGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Exonerate_coding2genome ggattgccaaaggactagatataggcacgtttttaactttcgctcaataggaagtaactcatgatatggatatgtgcctatggcatgagggaagtctgttccggagtagctcccagcagacactctttgccagcctagttatgcgttatgcagacctctacacatcctcattcattaacctactgtactacccattcagctacctcttcagagctgcccacgtcctggtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCCTATGGCATGAGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTGAAAATTGGCACC-TACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgagtaccagactaatgagaaaggtgagttctttttctccttccctgtagAAAACTGGAAAACTGAAAAATGGCTCCCTACACAGGCC-TTTACAACAT---GTTGTCTATTCTGGGggtagctatgccattggccttccaggggtcttttcatggaaggtactctct Alignment from CESAR AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgagtaccagactaatgagaaaggtgagttctttttctccttccctgtagAAAACTGGAAAACTGAAAAATGGCTCCCTACACAGGCCTTTACAACAT---GTTGTCTATTCTGGGggtagctatgccattggccttccaggggtcttttcatggaaggtactctct Alignment from Spaln_aa2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGGGTT tgagtaccagactaatgagaaaggtgagttctttttctccttccctgtagAAAACTGGAAAACTGAAAAATGGCTCCCTACACAGGCCTTTACAACAT---GTTGTCTATTCTGGGGGTAgctatgccattggccttccaggggtcttttcatggaaggtactctct Alignment from Spaln_nt2Genome AAAACTGGAAAACTGAAAATTGGCACC-TACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagactaatgagaaaggtgagttctttttctccttccctgtagAAAACTGGAAAACTGAAAAATGGCTCCCTACACAGG-CCTTTACAACATG---TTGTCTATTCTGGGGgtagctatgccattggccttccaggggtcttttcatggaaggtactctct Alignment from Pairagon AAAACTGGAAAACTGAAAATTGGC-ACCTACACGGGCCCCCTGCAGCACGGCAT-----------TGTCTACTCAGGGG tgagtaccagactaatgagaaaggtgagttctttttctccttccctgtagAAAACTGGAAAACTGAAAAATGGCTCCCTACACAGGCC---------------TTTACAACATGTTGTCTATTCTGGGGgtagctatgccattggccttccaggggtcttttcatggaaggtactctct Alignment from Exonerate_protein2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagactaatgagaaaggtgagttctttttctccttccctgtagAAAACTGGAAAACTGAAAAATGGCTCCCTACACAGGCCTTTACAACAT---GTTGTCTATTCTGGGGgtagctatgccattggccttccaggggtcttttcatggaaggtactctct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagactaatgagaaaggtgagttctttttctccttccctgtagAAAACTGGAAAACTGAAAAATGGCTCCCTACACAGGCCTTTACAACAT---GTTGTCTATTCTGGGGgtagctatgccattggccttccaggggtcttttcatggaaggtactctct #### Nt5c2_ID10041_12 --> 0 - 0 Original Alignment CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTT-GACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agagccacctctggcttccatgagaagactctggcttctctttgtttcagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTCGATCTGA-TCTG---GATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACCGTGCTGCGTCAGATTGACACTgtatgagtgaaataaattggattaaatagatatgaagcctgctctactct Alignment from CESAR CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTT------GACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agagccacctctggcttccatgagaagactctggcttctctttgtttcagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTCGATCTGATCTG---------GATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACCGTGCTGCGTCAGATTGACACTgtatgagtgaaataaattggattaaatagatatgaagcctgctctactct Alignment from Spaln_aa2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agagccacctctggcttccatgagaagactctggcttctctttgtttcagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTCGATCTGATCTG---GATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACCGTGCTGCGTCAGATTGACACTgtatgagtgaaataaattggattaaatagatatgaagcctgctctactct Alignment from Spaln_nt2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTT-GACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agagccacctctggcttccatgagaagactctggcttctctttgtttcagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTCGATCTGAT----CTGGATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACCGTGCTGCGTCAGATTGACACTgtatgagtgaaataaattggattaaatagatatgaagcctgctctactct Alignment from Pairagon CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTT-GACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agagccacctctggcttccatgagaagactctggcttctctttgtttcagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTCGATCTGATC----TGGATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACCGTGCTGCGTCAGATTGACACTgtatgagtgaaataaattggattaaatagatatgaagcctgctctactct Alignment from Exonerate_protein2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agagccacctctggcttccatgagaagactctggcttctctttgtttcagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTCGATCTGATCTG---GATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACCGTGCTGCGTCAGATTGACACTgtatgagtgaaataaattggattaaatagatatgaagcctgctctactct Alignment from Exonerate_coding2genome CATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAGCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTT--GGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agagccacctctgGCTTCCATGAGAAGACTCTGGCTTCTCTTTGTTTCAGCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTCGAT---CTGATCTGGATGCTCGGAAACCACTCT--TTTTTGGTGAAGGAACCGTGCTGCGTCAGATTGACACTgtatgagtgaaataaattggattaaatagatatgaagcctgctctactct Alignment from GeneWise CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agagccacctctggcttccatgagaagactctggcttctctttgtttcagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTCGATCTGATCTG---GATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACCGTGCTGCGTCAGATTGACACTgtatgagtgaaataaattggattaaatagatatgaagcctgctctactct #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAG-GAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagtTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGCGAGC-AGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagtTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGCGAGCAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTGGTACCCAAGCGAGCAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGT---AATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAG-GAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTT---GGTACCCAAGCGAGCA-GTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from Pairagon No alignment No alignment Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGCGAGCAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from Exonerate_coding2genome ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagttttccaggtggtaagtgtgaccctgatgaccgagatgttgtaatacacactgcactgcaggagacacaagaggagttagacttggtacccaagcgagcagtctggggggtgctgcaacctgtgcatgatcaggtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGCGAGCAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt #### Nxf1_ID2347_7 --> 0 - 1 Original Alignment CTGATCATGAGCAAACGATATGAT-GGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg cactaagctcatgttaaaatcatctagagggtcttttatccctgacacagACTGTCATGAGCAAACAGTATGACCAGTA-TCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCTggtgagtcatgcccagtgaacagattattgaggtaggaagtcagggccttt Alignment from CESAR CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg cactaagctcatgttaaaatcatctagagggtcttttatccctgacacagACTGTCATGAGCAAACAGTATGACCAGTATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCTggtgagtcatgcccagtgaacagattattgaggtaggaagtcagggccttt Alignment from Spaln_aa2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaagctcatgttaaaatcatctagagggtcttttatccctgacacagACTGTCATGAGCAAACAGTATGACCAGTATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCTGgtgagtcatgcccagtgaacagattattgaggtaggaagtcagggccttt Alignment from Spaln_nt2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaagctcatgttaaaatcatctagagggtcttttatccctgacacagACTGTCATGAGCAAACAGTATGACCAGTATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCTGgtgagtcatgcccagtgaacagattattgaggtaggaagtcagggccttt Alignment from Pairagon CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaagctcatgttaaaatcatctagagggtcttttatccctgacacagACTGTCATGAGCAAACAGTATGACCAGTATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCTGgtgagtcatgcccagtgaacagattattgaggtaggaagtcagggccttt Alignment from Exonerate_protein2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaagctcatgttaaaatcatctagagggtcttttatccctgacacagACTGTCATGAGCAAACAGTATGACCAGTATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCTGgtgagtcatgcccagtgaacagattattgaggtaggaagtcagggccttt Alignment from Exonerate_coding2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaagctcatgttaaaatcatctagagggtcttttatccctgacacagACTGTCATGAGCAAACAGTATGACCAGTATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCTGgtgagtcatgcccagtgaacagattattgaggtaggaagtcagggccttt Alignment from GeneWise CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaagctcatgttaaaatcatctagagggtcttttatccctgacacagACTGTCATGAGCAAACAGTATGACCAGTATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCTGgtgagtcatgcccagtgaacagattattgaggtaggaagtcagggccttt #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGT-TTTTCTGTCAATGGAGTCTTCAAGGAAg acaaaagtagctataagcctctttggtttcaacatcctctctcctcatagAGCACATTACTAAGTCCTAT-CTTAAATGGAGTCCTCAAGGAAggtaattgtttttgcatactctttgcagactctgctgtatctcccttctta Alignment from CESAR AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAg acaaaagtagctataagcctctttggtttcaacatcctctctcctcatagAGCACATTACTAAGTCCTATCTTAAATGGAGTCCTCAAGGAAggtaattgtttttgcatactctttgcagactctgctgtatctcccttctta Alignment from Spaln_aa2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acaaaagtagctataagcctctttggtttcaacatcctctctcctcatagAGCACATTACTAAGTCCTATCTTAAATGGAGTCCTCAAGGAAGgtaattgtttttgcatactctttgcagactctgctgtatctcccttctta Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acaaaagtagctataagcctctttggtttcaacatcctctctcctcatagAGCACATTACTAAGTCCTATCTTAAATGGAGTCCTCAAGGAAGgtaattgtttttgcatactctttgcagactctgctgtatctcccttctta Alignment from Pairagon AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acaaaagtagctataagcctctttggtttcaacatcctctctcctcatagAGCACATTACTAAGTCCTATCTTAAATGGAGTCCTCAAGGAAGgtaattgtttttgcatactctttgcagactctgctgtatctcccttctta Alignment from Exonerate_protein2genome acaaaagtagctataagcctctttggtttcaacatcctctctcctcatagagcacattactaagtcctatcttaaatggagtcctcaaggaaggtaattgtttttgcatactctttgcagactctgctgtatctcccttctta Alignment from Exonerate_coding2genome acaaaagtagctataagcctctttggtttcaacatcctctctcctcatagagcacattactaagtcctatcttaaatggagtcctcaaggaaggtaattgtttttgcatactctttgcagactctgctgtatctcccttctta Alignment from GeneWise acaaaagtagctataagcctctttggtttcaacatcctctctcctcatagagcacattactaagtcctatcttaaatggagtcctcaaggaaggtaattgtttttgcatactctttgcagactctgctgtatctcccttctta #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGT-GCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ccgtaactcttttgcacctcaaggcactgtgtgtgtgtcttctgacacagtaGATGGGAAGTTTCGAGATTCTTTACATCGCCTATG-CAGGACATTCATTGCAGTTCCTGCAAGTAATACGgggtaaggagatctgattgattaacaatgagaggaatggaggacagaacagt Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ccgtaactcttttgcacctcaaggcactgtgtgtgtgtcttctgacacagtaGATGGGAAGTTTCGAGATTCTTTACATCGCCTATGCAGGACATTCATTGCAGTTCCTGCAAGTAATACGgggtaaggagatctgattgattaacaatgagaggaatggaggacagaacagt Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ccgtaactcttttgcacctcaaggcactgtgtgtgtgtcttctgacacagTAGATGGGAAGTTTCGAGATTCTTTACATCGCCTATGCAGGACATTCATTGCAGTTCCTGCAAGTAATACGGGgtaaggagatctgattgattaacaatgagaggaatggaggacagaacagt Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ccgtaactcttttgcacctcaaggcactgtgtgtgtgtcttctgacacagTAGATGGGAAGTTTCGAGATTCTTTACATCGCCTATGCAGGACATTCATTGCAGTTCCTGCAAGTAATACGGGgtaaggagatctgattgattaacaatgagaggaatggaggacagaacagt Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTAC-------GTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ccgtaactcttttgcacctcaaggcactgtgtgtgtgtcttctgacacagTAGATGGGAAGTTTCGAGATTCTTTACATCGCCTATGC-------AGGACATTCATTGCAGTTCCTGCAAGTAATACGGGgtaaggagatctgattgattaacaatgagaggaatggaggacagaacagt Alignment from Exonerate_protein2genome TTTTCTGTCAATGGAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ccgtaactcttttgcacctcaaGGCACTGTGTGTGTGTCTTCTGACACAGTAGATGGGAAGTTTCGAGATTCTTTACATCGCCTATGCAGGACATTCATTGCAGTTCCTGCAAGTAATACGGGgtaaggagatctgattgattaacaatgagaggaatggaggacagaacagt Alignment from Exonerate_coding2genome TTTTCTGTCAATGGAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ccgtaactcttttgcacctcaaGGCACTGTGTGTGTGTCTTCTGACACAGTAGATGGGAAGTTTCGAGATTCTTTACATCGCCTATGCAGGACATTCATTGCAGTTCCTGCAAGTAATACGGGgtaaggagatctgattgattaacaatgagaggaatggaggacagaacagt Alignment from GeneWise -----CTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcacctcaagGCACTGTGTGTGTGTCTTCTGAC------------ACAGTAGATGGGAAGTTTCGAGATTCTTTACATCGCCTATGCAGGACATTCATTGCAGTTCCTGCAAGTAATACGGGgtaaggagatctgattgattaacaatgagaggaatggaggacagaacagt #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAA-GGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa gtgtttcgagttaagaatcaaagaaatagaggctatttctcttcctgcagatCAATGCTGTTCTGGAAAGCGGGGACA-GAGTAAGGAGGATGATGAAAATGAATTTTTTGATGCACCAGAAATTATCACCATGCCTGAAAACCTGAGCCACaagtcagagtcctttagccaagctttacaggcaaagtatctttttttaagtg Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa gtgtttcgagttaagaatcaaagaaatagaggctatttctcttcctgcagatCAATGCTGTTCTGGAAAGCGGGGACAGAGTAAGGAGGATGATGAAAATGAATTTTTTGATGCACCAGAAATTATCACCATGCCTGAAAACCTGAGCCACaagtcagagtcctttagccaagctttacaggcaaagtatctttttttaagtg Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgtttcgagttaagaatcaaagaaatagaggctatttctcttcctgcagATCAATGCTGTTCTGGAAAGCGGGGACAGAGTAAGGAGGATGATGAAAATGAATTTTTTGATGCACCAGAAATTATCACCATGCCTGAAAACCTGAGCCACAAgtcagagtcctttagccaagctttacaggcaaagtatctttttttaagtg Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAA-GGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgtttcgagttaagaatcaaagaaatagaggctatttctcttcctgcagATCAATGCTGTTCTGGAAAGCGGGGACA-GAGTAAGGAGGATGATGAAAATGAATTTTTTGATGCACCAGAAATTATCACCATGCCTGAAAACCTGAGCCACAAgtcagagtcctttagccaagctttacaggcaaagtatctttttttaagtg Alignment from Pairagon ATCAGTGCTGTTCTGGCAAA-GGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgtttcgagttaagaatcaaagaaatagaggctatttctcttcctgcagATCAATGCTGTTCTGGAAAGCGGGGACA-GAGTAAGGAGGATGATGAAAATGAATTTTTTGATGCACCAGAAATTATCACCATGCCTGAAAACCTGAGCCACAAgtcagagtcctttagccaagctttacaggcaaagtatctttttttaagtg Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgtttcgagttaagaatcaaagaaatagaggctatttctcttcctgcagATCAATGCTGTTCTGGAAAGCGGGGACAGAGTAAGGAGGATGATGAAAATGAATTTTTTGATGCACCAGAAATTATCACCATGCCTGAAAACCTGAGCCACAAgtcagagtcctttagccaagctttacaggcaaagtatctttttttaagtg Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgtttcgagttaagaatcaaagaaatagaggctatttctcttcctgcagATCAATGCTGTTCTGGAAAGCGGGGACAGAGTAAGGAGGATGATGAAAATGAATTTTTTGATGCACCAGAAATTATCACCATGCCTGAAAACCTGAGCCACAAgtcagagtcctttagccaagctttacaggcaaagtatctttttttaagtg Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgtttcgagttaagaatcaaagaaatagaggctatttctcttcctgcagATCAATGCTGTTCTGGAAAGCGGGGACAGAGTAAGGAGGATGATGAAAATGAATTTTTTGATGCACCAGAAATTATCACCATGCCTGAAAACCTGAGCCACAAgtcagagtcctttagccaagctttacaggcaaagtatctttttttaagtg #### Osbp_ID3347_6 --> 1 - 0 Original Alignment aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG gacctagaatcctgggtatagttcttattctgccctctgctttccttcagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCA-CCTTGATGAGCAAgtaagactacatcctcccgaggtgtgttatgtcctggtaaccctttacaa Alignment from CESAR aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gacctagaatcctgggtatagttcttattctgccctctgctttccttcagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAGCAAgtaagactacatcctcccgaggtgtgttatgtcctggtaaccctttacaa Alignment from Spaln_aa2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gacctagaatcctgggtatagttcttattctgccctctgctttccttcagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAGCAAgtaagactacatcctcccgaggtgtgttatgtcctggtaaccctttacaa Alignment from Spaln_nt2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG gacctagaatcctgggtatagttcttattctgccctctgctttccttcagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCA-CCTTGATGAGCAAgtaagactacatcctcccgaggtgtgttatgtcctggtaaccctttacaa Alignment from Pairagon ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gacctagaatcctgggtatagttcttattctgccctctgctttccttcagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAGCAAgtaagactacatcctcccgaggtgtgttatgtcctggtaaccctttacaa Alignment from Exonerate_protein2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gacctagaatcctgggtatagttcttattctgccctctgctttccttcagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAGCAAgtaagactacatcctcccgaggtgtgttatgtcctggtaaccctttacaa Alignment from Exonerate_coding2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gacctagaatcctgggtatagttcttattctgccctctgctttccttcagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAGCAAgtaagactacatcctcccgaggtgtgttatgtcctggtaaccctttacaa Alignment from GeneWise ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG gacctagaatcctgggtatagttcttattctgccctctgctttccttcagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCACCTTGATGAGCAAgtaagactacatcctcccgaggtgtgttatgtcctggtaaccctttacaa #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTAC-CTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCCTGCAGC-GTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAA---------------AGTCAGGAGgtatttcctcccccagcacctgtactgaggccccccttttttttcttggt Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCCTGCAGCGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGT---------------CAGGAGgtatttcctcccccagcacctgtactgaggccccccttttttttcttggt Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCCTGCAGCGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGGTATTTCCTCCCCCAgcacctgtactgaggccccccttttttttcttggt Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCCTGCAGCGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAA---GTCAGGAGgtatttcctcccccagcacctgtactgaggccccccttttttttcttggt Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGC-----TCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACC-----CTGCAGCGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGgtcaaagtcaggaggtatttcctcccccagcacctgtactgaggccccccttttttttcttggt Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCCTGCAGCGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGGTATTTCCTCCCCCAgcacctgtactgaggccccccttttttttcttggt Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCCTGCAGCGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGGTATTTCCTCCCCCAgcacctgtactgaggccccccttttttttcttggt Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGA gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCCTGCAGCGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAgtcaggaggtatttcctcccccagcacctgtactgaggccccccttttttttcttggt #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca ctcctagttggtgtggctctggtctgtcttttcttttccctttgttgcaggACAGAAGTGATGTTTATGGCACGCCCAAGAAC-GGTCCGGATCCTGCAAGTAGCCCTTTCCAACTCAACTTCTATTCCACCAAACCTAGCATCTTTTTTATCCCGCTTTGTTGACCGACAAAAACTGAATCTGTTAGAGACCAAACTCaagtatgcattgtcacactttttctgctttgtcgggtgagaaaaactgattg Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca ctcctagttggtgtggctctggtctgtcttttcttttccctttgttgcaggACAGAAGTGATGTTTATGGCACGCCCAAGAACGGTCCGGATCCTGCAAGTAGCCCTTTCCAACTCAACTTCTATTCCACCAAACCTAGCATCTTTTTTATCCCGCTTTGTTGACCGACAAAAACTGAATCTGTTAGAGACCAAACTCaagtatgcattgtcacactttttctgctttgtcgggtgagaaaaactgattg Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA ctcctagttggtgtggctctggtctgtcttttcttttccctttgttgcagGACAGAAGTGATGTTTATGGCACGCCCAAGAACGGTCCGGATCCTGCAAGTAGCCCTTTCCAACTCAACTTCTATTCCACCAAACCTAGCATCTTTTTTATCCCGCTTTGTTGACCGACAAAAACTGAATCTGTTAGAGACCAAACTCAAgtatgcattgtcacactttttctgctttgtcgggtgagaaaaactgattg Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAA-CCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA ctcctagttggtgtggctctggtctgtcttttcttttccctttgttgcagGACAGAAGTGATGTTTATGGCACGCCCAAGAAC-GGTCCGGATCCTGCAAGTAGCCCTTTCCAACTCAACTTCTATTCCACCAAACCTAGCATCTTTTTTATCCCGCTTTGTTGACCGACAAAAACTGAATCTGTTAGAGACCAAACTCAAgtatgcattgtcacactttttctgctttgtcgggtgagaaaaactgattg Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA ctcctagttggtgtggctctggtctgtcttttcttttccctttgttgcagGACAGAAGTGATGTTTATGGCACGCCCAAGAACGGTCCGGATCCTGCAAGTAGCCCTTTCCAACTCAACTTCTATTCCACCAAACCTAGCATCTTTTTTATCCCGCTTTGTTGACCGACAAAAACTGAATCTGTTAGAGACCAAACTCAAgtatgcattgtcacactttttctgctttgtcgggtgagaaaaactgattg Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG ctcctagttggtgtggctctggtctgtcttttcttttccctttgttgcagGACAGAAGTGATGTTTATGGCACGCCCAAGAACGGTCCGGATCCTGCAAGTAGCCCTTTCCAACTCAACTTCTATTCCACCAAACCTAGCATCTTTTTTATCCCGCTTTGTTGACCGACAAAAACTGAATCTGTTAGAGACCAAACTCAAGtatgcattgtcacactttttctgctttgtcgggtgagaaaaactgattg Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG ctcctagttggtgtggctctggtctgtcttttcttttccctttgttgcagGACAGAAGTGATGTTTATGGCACGCCCAAGAACGGTCCGGATCCTGCAAGTAGCCCTTTCCAACTCAACTTCTATTCCACCAAACCTAGCATCTTTTTTATCCCGCTTTGTTGACCGACAAAAACTGAATCTGTTAGAGACCAAACTCAAGtatgcattgtcacactttttctgctttgtcgggtgagaaaaactgattg Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATACGG ctcctagttggtgtggctctggtctgtcttttcttttccctttgttgcagGACAGAAGTGATGTTTATGGCACGCCCAAGAACGGTCCGGATCCTGCAAGTAGCCCTTTCCAACTCAACTTCTATTCCACCAAACCTAGCATCTTTTTTATCCCGCTTTGTTGACCGACAAAAACTGAATCTGTTAGAGACCAAACTCAAGTATGCATTGTCACACTTTttctgctttgtcgggtgagaaaaactgattg #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAA-GGAGGCACCCCCAAATCTCAG aaattataaactgaaatgttgtgctgggatttctttttataaacttctaggcAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCAAGGACCACCCCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAACGGTGGTA-CCCCAAGTCTCAGgtaaagaactcatggtaaaggggcgtccatgatgacaaggtggttactcc Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataaactgaaatgttgtgctgggatttctttttataaacttctaggcAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCAAGGACCACCCCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAACGGTGGTACCCCAAGTCTCAGgtaaagaactcatggtaaaggggcgtccatgatgacaaggtggttactcc Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataaactgaaatgttgtgctgggatttctttttataaacttctagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCAAGGACCACCCCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAACGGTGGTACCCCAAGTCTCAGgtaaagaactcatggtaaaggggcgtccatgatgacaaggtggttactcc Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataaactgaaatgttgtgctgggatttctttttataaacttctagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCAAGGACCACCCCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAACGGTGGTACCCCAAGTCTCAGgtaaagaactcatggtaaaggggcgtccatgatgacaaggtggttactcc Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataaactgaaatgttgtgctgggatttctttttataaacttctagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCAAGGACCACCCCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAACGGTGGTACCCCAAGTCTCAGgtaaagaactcatggtaaaggggcgtccatgatgacaaggtggttactcc Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataaactgaaatgttgtgctgggatttctttttataaacttctagGCAGCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCAAGGACCACCCCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAACGGTGGTACCCCAAGTCTCAGgtaaagaactcatggtaaaggggcgtccatgatgacaaggtggttactcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaattataaactgaaatgttgtgctgggatttctttttataaacttctaggcagCAGTGAGCAGCCCCTCCCACCAGGCCCTAGCTGGGGACCACGACCCTCCCTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCCCCCCCTCGGCTCCAAGGACCACCCCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGGCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAACGGTGGTACCCCAAGTCTCAGgtaaagaactcatggtaaaggggcgtccatgatgacaaggtggttactcc #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCA-GCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtttcctttaccttggaccactgatgtttcccctcccattagGGCCATTTCACATCACCTGATGAGTATGAGGAACTACGCAG-CCTATATGACACAATTGCC---AATGAGGAGCGGCTTGTAATTTCACATGAGAGAGACCCTGCCTGGAGGAGTGCCATCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTATAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtaagccaaatttaatgatgaatagcaacctaagatgtattgatgtccct Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtttcctttaccttggaccactgatgtttcccctcccattagGGCCATTTCACATCACCTGATGAGTATGAGGAACTACGCAGCCTATATGACACAATT---GCCAATGAGGAGCGGCTTGTAATTTCACATGAGAGAGACCCTGCCTGGAGGAGTGCCATCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTATAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtaagccaaatttaatgatgaatagcaacctaagatgtattgatgtccct Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtttcctttaccttggaccactgatgtttcccctcccattagGGCCATTTCACATCACCTGATGAGTATGAGGAACTACGCAGCCTATATGACACAATT---GCCAATGAGGAGCGGCTTGTAATTTCACATGAGAGAGACCCTGCCTGGAGGAGTGCCATCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTATAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtaagccaaatttaatgatgaatagcaacctaagatgtattgatgtccct Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCA-GCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtttcctttaccttggaccactgatgtttcccctcccattagGGCCATTTCACATCACCTGATGAGTATGAGGAACTACGCAG-CCTATATGACACAAT---TGCCAATGAGGAGCGGCTTGTAATTTCACATGAGAGAGACCCTGCCTGGAGGAGTGCCATCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTATAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtaagccaaatttaatgatgaatagcaacctaagatgtattgatgtccct Alignment from Pairagon ------------------------------------------------AGGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG GAGCAGGTGTTTCCTTTACCTTGGACCACTGATGTTTCCCCTCCCATTAGGGCCATTTCACATCACCTGATGAGTATGAGGAACTACGCAGCCTATATGACACAATT---GCCAATGAGGAGCGGCTTGTAATTTCACATGAGAGAGACCCTGCCTGGAGGAGTGCCATCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTATAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtaagccaaatttaatgatgaatagcaacctaagatgtattgatgtccct Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtttcctttaccttggaccactgatgtttcccctcccattagGGCCATTTCACATCACCTGATGAGTATGAGGAACTACGCAGCCTATATGACACAATT---GCCAATGAGGAGCGGCTTGTAATTTCACATGAGAGAGACCCTGCCTGGAGGAGTGCCATCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTATAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtaagccaaatttaatgatgaatagcaacctaagatgtattgatgtccct Alignment from Exonerate_coding2genome gagcaggtgtttcctttaccttggaccactgatgtttcccctcccattagggccatttcacatcacctgatgagtatgaggaactacgcagcctatatgacacaattgccaatgaggagcggcttgtaatttcacatgagagagaccctgcctggaggagtgccatcctcggtaacaccccctctctcctcttactccgccatgacatggatgatgcctctggtgagtataagatcatcatgctcaacaggcgccacctcagtttccgagtcataaaggtaagccaaatttaatgatgaatagcaacctaagatgtattgatgtccct Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtttcctttaccttggaccactgatgtttcccctcccattagGGCCATTTCACATCACCTGATGAGTATGAGGAACTACGCAGCCTATATGACACAATTGCC---AATGAGGAGCGGCTTGTAATTTCACATGAGAGAGACCCTGCCTGGAGGAGTGCCATCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGACATGGATGATGCCTCTGGTGAGTATAAGATCATCATGCTCAACAGGCGCCACCTCAGTTTCCGAGTCATAAAGgtaagccaaatttaatgatgaatagcaacctaagatgtattgatgtccct #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTC-CTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG cctcaatgatcctttgaaatggagaagccattaccttttcctacaaacagcTTAGAGCCCTTCCCTCTATG-CCTACGAGCTCTGTTTAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGG---------GACATAGATTTATTGCACCAGGTTGTGGCACCAGGGGTACGTATGGCCCTAAAGCTTCATCATCATCAGgtaagtataattaatgcagtgtaggagcaggtgtttcctttaccttggac Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG cctcaatgatcctttgaaatggagaagccattaccttttcctacaaacagcTTAGAGCCCTTCCCTCTATGCCTACGAGCTCTGTTTAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGG---------GACATAGATTTATTGCACCAGGTTGTGGCACCAGGGGTACGTATGGCCCTAAAGCTTCATCATCATCAGgtaagtataattaatgcagtgtaggagcaggtgtttcctttaccttggac Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCAC------CAG cctcaatgatcctttgaaatggagaagccattaccttttcctacaaacagCTTAGAGCCCTTCCCTCTATGCCTACGAGCTCTGTTTAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGG---------GACATAGATTTATTGCACCAGGTTGTGGCACCAGGGGTACGTATGGCCCTAAAGCTTCATCATCATCAGgtaagtataattaatgcagtgtaggagcaggtgtttcctttaccttggac Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCA------G cctcaatgatcctttgaaatggagaagccattaccttttcctacaaacagCTTAGAGCCCTTCCCTCTATGCCTACGAGCTCTGTTTAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGG---------GACATAGATTTATTGCACCAGGTTGTGGCACCAGGGGTACGTATGGCCCTAAAGCTTCATCATCATCAGgtaagtataattaatgcagtgtaggagcaggtgtttcctttaccttggac Alignment from Pairagon CCTGGAGCCCTT-CCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCT------TCACCAG cctcaatgatcctttgaaatggagaagccattaccttttcctacaaacagCTTAGAGCCCTTCCCTCTAT-GCCTACGAGCTCTGTTTAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGG---------GACATAGATTTATTGCACCAGGTTGTGGCACCAGGGGTACGTATGGCCCTAAAGCTTCATCATCATCAGgtaagtataattaatgcagtgtaggagcaggtgtttcctttaccttggac Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG cctcaatgatcctttgaaatggagaagccattaccttttcctacaaacagCTTAGAGCCCTTCCCTCTATGCCTACGAGCTCTGTTTAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGG---------GACATAGATTTATTGCACCAGGTTGTGGCACCAGGGGTACGTATGGCCCTAAAGCTTCATCATCATCAGgtaagtataattaatgcagtgtaggagcaggtgtttcctttaccttggac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG cctcaatgatcctttgaaatggagaagccattaccttttcctacaaacagCTTAGAGCCCTTCCCTCTATGCCTACGAGCTCTGTTTAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGG---------GACATAGATTTATTGCACCAGGTTGTGGCACCAGGGGTACGTATGGCCCTAAAGCTTCATCATCATCAGgtaagtataattaatgcagtgtaggagcaggtgtttcctttaccttggac #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGG-AATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttaccctgggctctttagtaatgccacctgatcctctccccagCCTGTGGACCAGGATTGGCAATT-ACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCGCACAGCATGTCAGCCaggtgagagcctgcaggcagctaaagaagacccaacaacccattagtagact Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttaccctgggctctttagtaatgccacctgatcctctccccagCCTGTGGACCAGGATTGGCAATTACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCGCACAGCATGTCAGCCaggtgagagcctgcaggcagctaaagaagacccaacaacccattagtagact Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctctttagtaatgccacctgatcctctccccagCCTGTGGACCAGGATTGGCAATTACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCGCACAGCATGTCAGCCAGgtgagagcctgcaggcagctaaagaagacccaacaacccattagtagact Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctctttagtaatgccacctgatcctctccccagCCTGTGGACCAGGATTGGCAATTACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCGCACAGCATGTCAGCCAGgtgagagcctgcaggcagctaaagaagacccaacaacccattagtagact Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctctttagtaatgccacctgatcctctccccagCCTGTGGACCAGGATTGGCAATTACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCGCACAGCATGTCAGCCAGgtgagagcctgcaggcagctaaagaagacccaacaacccattagtagact Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctctttagtaatgccacctgatcctctccccagCCTGTGGACCAGGATTGGCAATTACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCGCACAGCATGTCAGCCAGgtgagagcctgcaggcagctaaagaagacccaacaacccattagtagact Alignment from Exonerate_coding2genome agggatgttaccctgggctctttagtaatgccacctgatcctctccccagcctgtggaccaggattggcaattaccattggttacatcatgctttggcttgtgtgtgttgggtcgccgggctctgggcacagcagcgcacagcatgtcagccaggtgagagcctgcaggcagctaaagaagacccaacaacccattagtagact Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctctttagtaatgccacctgatcctctccccagCCTGTGGACCAGGATTGGCAATTACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCGCACAGCATGTCAGCCAGgtgagagcctgcaggcagctaaagaagacccaacaacccattagtagact #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAAC-CCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgtctggccagactagctgtgaagaactctgtttctgctattgttatagacTCAGCCATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTGAATCCCTCTACTGG-TAGTGCAGTATTCATTACGTCGTACACAAGCCCCCTCAAATATTGGGAGAGAGACTACaagtatgtcagtaagaaagagcactctagttccagagatacctttagggttg Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgtctggccagactagctgtgaagaactctgtttctgctattgttatagacTCAGCCATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTGAATCCCTCTACTGGTAGTGCAGTATTCATTACGTCGTACACAAGCCCCCTCAAATATTGGGAGAGAGACTACaagtatgtcagtaagaaagagcactctagttccagagatacctttagggttg Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggccagactagctgtgaagaactctgtttctgctattgttatagACTCAGCCATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTGAATCCCTCTACTGGTAGTGCAGTATTCATTACGTCGTACACAAGCCCCCTCAAATATTGGGAGAGAGACTACAAgtatgtcagtaagaaagagcactctagttccagagatacctttagggttg Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggccagactagctgtgaagaactctgtttctgctattgttatagACTCAGCCATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTGAATCCCTCTACTGGTAGTGCAGTATTCATTACGTCGTACACAAGCCCCCTCAAATATTGGGAGAGAGACTACAAgtatgtcagtaagaaagagcactctagttccagagatacctttagggttg Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggccagactagctgtgaagaactctgtttctgctattgttatagACTCAGCCATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTGAATCCCTCTACTGGTAGTGCAGTATTCATTACGTCGTACACAAGCCCCCTCAAATATTGGGAGAGAGACTACAAgtatgtcagtaagaaagagcactctagttccagagatacctttagggttg Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggccagactagctgtgaagaactctgtttctgctattgttatagACTCAGCCATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTGAATCCCTCTACTGGTAGTGCAGTATTCATTACGTCGTACACAAGCCCCCTCAAATATTGGGAGAGAGACTACAAgtatgtcagtaagaaagagcactctagttccagagatacctttagggttg Alignment from Exonerate_coding2genome T Ctgtctggccagactagctgtgaagaactctgtttctgctattgttatagactcagccatgttgttcctccaagctttgctctcaggtctgttctctactccactgaatccctctactggtagtgcagtattcattacgtcgtacacaagccccctcaaatattgggagagagactacaagtatgtcagtaagaaagagcactctagttccagagatacctttagggttg Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgtctggccagactagctgtgaagaactctgtttctgctattgttatagACTCAGCCATGTTGTTCCTCCAAGCTTTGCTCTCAGGTCTGTTCTCTACTCCACTGAATCCCTCTACTGGTAGTGCAGTATTCATTACGTCGTACACAAGCCCCCTCAAATATTGGGAGAGAGACTACAAgtatgtcagtaagaaagagcactctagttccagagatacctttagggttg #### Pcnxl3_ID1170_23 --> 0 - 1 Original Alignment CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTA-CTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAc tgtttgcaccttgacttaggcatacgttatctcgtgctgtgttctcacagCTATGGGACCTTCTATATAAGCTGCGTTTTGTACTTGA-ATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCAcgtttgaagcttaaatctgtacaggctattattttctggctttactgtctg Alignment from CESAR CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAc tgtttgcaccttgacttaggcatacgttatctcgtgctgtgttctcacagCTATGGGACCTTCTATATAAGCTGCGTTTTGTACTTGAATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCAcgtttgaagcttaaatctgtacaggctattattttctggctttactgtctg Alignment from Spaln_aa2Genome CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgcaccttgacttaggcatacgttatctcgtgctgtgttctcacagCTATGGGACCTTCTATATAAGCTGCGTTTTGTACTTGAATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtttgaagcttaaatctgtacaggctattattttctggctttactgtctg Alignment from Spaln_nt2Genome CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgcaccttgacttaggcatacgttatctcgtgctgtgttctcacagCTATGGGACCTTCTATATAAGCTGCGTTTTGTACTTGAATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtttgaagcttaaatctgtacaggctattattttctggctttactgtctg Alignment from Pairagon CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgcaccttgacttaggcatacgttatctcgtgctgtgttctcacagCTATGGGACCTTCTATATAAGCTGCGTTTTGTACTTGAATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtttgaagcttaaatctgtacaggctattattttctggctttactgtctg Alignment from Exonerate_protein2genome CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgcaccttgacttaggcatacgttatctcgtgctgtgttctcacagCTATGGGACCTTCTATATAAGCTGCGTTTTGTACTTGAATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtttgaagcttaaatctgtacaggctattattttctggctttactgtctg Alignment from Exonerate_coding2genome CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCACACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTT tgtttgcaccttgacttaggcatacgttatctcgtgctgtgttctcacagCTATGGGACCTTCTATATAAGCTGCGTTTTGTACTTGAATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACGTTTGAAGCTTAAATCTGTACAGGCTATTATTTTCTGGCTTTACtgtctg Alignment from GeneWise CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgcaccttgacttaggcatacgttatctcgtgctgtgttctcacagCTATGGGACCTTCTATATAAGCTGCGTTTTGTACTTGAATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtttgaagcttaaatctgtacaggctattattttctggctttactgtctg #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment GTGGCCACTg tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATG-TACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg GTGGCAACTggtaaagcacctcaagataccaagcacttgtgcatacccagtaTTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGCTACCTCT-GGAACAAATTGATATGCATGGTTTTGGAGGCACAggtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from CESAR GTGGCCACTg tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg GTGGCAACTggtgggtcacctcaagataccaagcacttgtgcatacccagtaTTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGCTACCTCTGGAACAAATTGATATGCATGGTTTTGGAGGCACAggtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Spaln_aa2Genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaaagcacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGCTACCTCTGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Spaln_nt2Genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATG-TACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaaagcacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGCTACCT-CTGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Pairagon GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaaagcacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGCTACCTCTGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Exonerate_protein2genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaaagcacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGCTACCTCTGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Exonerate_coding2genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaaagcacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGCTACCTCTGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from GeneWise GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaaagcacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGCTACCTCTGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGG-ACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGCACAACTC-ACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTggtgggtcacctcaagataaccttcctcattccatcaacagtaTTCACCTT Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGCACAACTCACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTggtgggtcacctcaagataccaagcacttgtgcatacccagtaTTCACCTT Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGCACAACTCACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagataaccttcctcattccatcaacagTATTCACCTT Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGCACAACTCACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagataaccttcctcattccatcaacagTATTCACCTT Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGC-CCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGCACAACTCA-CCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagataaccttcctcattccatcaacagTATTCACCTT Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGCACAACTCACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagataaccttcctcattccatcaacagTATTCACCTT Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGCACAACTCACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagataaccttcctcattccatcaacagTATTCACCTT Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGCACAACTCACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagataaccttcctcattccatcaacagTATTCACCTT #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTCGATGCAG-ATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTCGATGCAGATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTCGATGCAGATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Spaln_nt2Genome AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTCGATGCAG-ATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Pairagon AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTCGATGCAG-ATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Exonerate_protein2genome atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagagcattcaacctcgatgcagatcacccatgcatgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Exonerate_coding2genome atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagagcattcaacctcgatgcagatcacccatgcatgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from GeneWise atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagagcattcaacctcgatgcagatcacccatgcatgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg #### Pcnxl3_ID1181_12 --> 1 - 0 Original Alignment gACACGTGGG---GTAATGGAGAACATTTTCGGT-GTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctataggcattttaggaaacatagtacatatttgtccttcctctgcaggACACGTGGTCTAGTAATGGAGAATATTTTTGGTCGTAGGGG-GAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGTCTGGTCATTGCTTCTTGTCAGTATTTTCTGCTCAAGgtacctactgggttctcagttttagaacagtagcctgcttgctatcctta Alignment from CESAR gACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctataggcattttaggaaacatagtacatatttgtccttcctctgcaggACACGTGGTCTAGTAATGGAGAATATTTTTGGTCGTAGGGGGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGTCTGGTCATTGCTTCTTGTCAGTATTTTCTGCTCAAGgtacctactgggttctcagttttagaacagtagcctgcttgctatcctta Alignment from Spaln_aa2Genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctataggcattttaggaaacatagtacatatttgtccttcctctgcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTCGTAGGGGGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGTCTGGTCATTGCTTCTTGTCAGTATTTTCTGCTCAAGgtacctactgggttctcagttttagaacagtagcctgcttgctatcctta Alignment from Spaln_nt2Genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctataggcattttaggaaacatagtacatatttgtccttcctctgcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTCGTAGGGGGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGAT---TATCTTTCAGTTTTGTCTGGTCATTGCTTCTTGTCAGTATTTTCTGCTCAAGgtacctactgggttctcagttttagaacagtagcctgcttgctatcctta Alignment from Pairagon GACACGTGG---GGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctataggcattttaggaaacatagtacatatttgtccttcctctgcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTCGTAGGGGGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGTCTGGTCATTGCTTCTTGTCAGTATTTTCTGCTCAAGgtacctactgggttctcagttttagaacagtagcctgcttgctatcctta Alignment from Exonerate_protein2genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctataggcattttaggaaacatagtacatatttgtccttcctctgcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTCGTAGGGGGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGTCTGGTCATTGCTTCTTGTCAGTATTTTCTGCTCAAGgtacctactgggttctcagttttagaacagtagcctgcttgctatcctta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctataggcattttaggaaacatagtacatatttgtccttcctctgcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTCGTAGGGGGAGTACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGAGATT---ATCTTTCAGTTTTGTCTGGTCATTGCTTCTTGTCAGTATTTTCTGCTCAAGgtacctactgggttctcagttttagaacagtagcctgcttgctatcctta #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGA-GAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa tcgaaattgagagaaagccacttaggacattgactctccctgtcccgcagacATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAACGTAATAGTTACATCTGCAGGCCGTCGAAATGC-GAGGCTCAGCTCCAAGGAGAAACTCagtaggatgaaatgttggaggctccttttaaagggtgaacgtccttaaaag Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa tcgaaattgagagaaagccacttaggacattgactctccctgtcccgcagacATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAACGTAATAGTTACATCTGCAGGCCGTCGAAATGCGAGGCTCAGCTCCAAGGAGAAACTCagtaggatgaaatgttggaggctccttttaaagggtgaacgtccttaaaag Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tcgaaattgagagaaagccacttaggacattgactctccctgtcccgcagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAACGTAATAGTTACATCTGCAGGCCGTCGAAATGCGAGGCTCAGCTCCAAGGAGAAACTCAgtaggatgaaatgttggaggctccttttaaagggtgaacgtccttaaaag Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGA-GAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tcgaaattgagagaaagccacttaggacattgactctccctgtcccgcagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAACGTAATAGTTACATCTGCAGGCCGTCGAAATGC-GAGGCTCAGCTCCAAGGAGAAACTCAgtaggatgaaatgttggaggctccttttaaagggtgaacgtccttaaaag Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCG-AGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tcgaaattgagagaaagccacttaggacattgactctccctgtcccgcagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAACGTAATAGTTACATCTGCAGGCCGTCGAAATGC-GAGGCTCAGCTCCAAGGAGAAACTCAgtaggatgaaatgttggaggctccttttaaagggtgaacgtccttaaaag Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tcgaaattgagagaaagccacttaggacattgactctccctgtcccgcagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAACGTAATAGTTACATCTGCAGGCCGTCGAAATGCGAGGCTCAGCTCCAAGGAGAAACTCAgtaggatgaaatgttggaggctccttttaaagggtgaacgtccttaaaag Alignment from Exonerate_coding2genome tcgaaattgagagaaagccacttaggacattgactctccctgtcccgcagacattaaagagctggtacgggagcagagcagcaacaacgtaatagttacatctgcaggccgtcgaaatgcgaggctcagctccaaggagaaactcagtaggatgaaatgttggaggctccttttaaagggtgaacgtccttaaaag Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tcgaaattgagagaaagccacttaggacattgactctccctgtcccgcagACATTAAAGAGCTGGTACGGGAGCAGAGCAGCAACAACGTAATAGTTACATCTGCAGGCCGTCGAAATGCGAGGCTCAGCTCCAAGGAGAAACTCAgtaggatgaaatgttggaggctccttttaaagggtgaacgtccttaaaag #### Pcsk5_ID4264_19 --> 2 - 2 Original Alignment ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTC-ATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTCATGGAAG-GGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from CESAR ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTCATGGAAGGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Spaln_aa2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTCATGGAAGGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Spaln_nt2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTCATGGAAGGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Pairagon GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATG-TCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTCATGGAAG-GGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Exonerate_protein2genome CTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgcttTGTCTCTAGGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTCATGGAAGGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Exonerate_coding2genome CTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgcttTGTCTCTAGGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTCATGGAAGGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from GeneWise GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTCATGGAAGGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCC-TACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggaggggggttgcttcttctgtctccccaggtGAGATTGCTATCCGCGTCTTTCGTGCATGCAGAGAACTTGGCATCCGCACAGTAGCTGTGTATTCGGAACAGGATACAGGGCTAACGCACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAACCCTATT-GCACATTCCAGACATCATTAGGGTTTCGAAGgtaaggaccaattacctttacaggatagagttttttgtcaagtgttctgt Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggaggggggttgcttcttctgtctccccaggtGAGATTGCTATCCGCGTCTTTCGTGCATGCAGAGAACTTGGCATCCGCACAGTAGCTGTGTATTCGGAACAGGATACAGGGCTAACGCACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAACCCTATTGCACATTCCAGACATCATTAGGGTTTCGAAGgtaaggaccaattacctttacaggatagagttttttgtcaagtgttctgt Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggaggggggttgcttcttctgtctccccagGTGAGATTGCTATCCGCGTCTTTCGTGCATGCAGAGAACTTGGCATCCGCACAGTAGCTGTGTATTCGGAACAGGATACAGGGCTAACGCACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAACCCTATTGCACATTCCAGACATCATTAGGGTTTCGAAGgtaaggaccaattacctttacaggatagagttttttgtcaagtgttctgt Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggaggggggttgcttcttctgtctccccagGTGAGATTGCTATCCGCGTCTTTCGTGCATGCAGAGAACTTGGCATCCGCACAGTAGCTGTGTATTCGGAACAGGATACAGGGCTAACGCACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAACCCTATTGCACATTCCAGACATCATTAGGGTTTCGAAGgtaaggaccaattacctttacaggatagagttttttgtcaagtgttctgt Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggaggggggttgcttcttctgtctccccagGTGAGATTGCTATCCGCGTCTTTCGTGCATGCAGAGAACTTGGCATCCGCACAGTAGCTGTGTATTCGGAACAGGATACAGGGCTAACGCACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAACCCTATTGCACATTCCAGACATCATTAGGGTTTCGAAGgtaaggaccaattacctttacaggatagagttttttgtcaagtgttctgt Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggaggggggttgcttcttctgtctccccagGTGAGATTGCTATCCGCGTCTTTCGTGCATGCAGAGAACTTGGCATCCGCACAGTAGCTGTGTATTCGGAACAGGATACAGGGCTAACGCACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAACCCTATTGCACATTCCAGACATCATTAGGGTTTCGAAGgtaaggaccaattacctttacaggatagagttttttgtcaagtgttctgt Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggaggggggttgcttcttctgtctccccagGTGAGATTGCTATCCGCGTCTTTCGTGCATGCAGAGAACTTGGCATCCGCACAGTAGCTGTGTATTCGGAACAGGATACAGGGCTAACGCACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAACCCTATTGCACATTCCAGACATCATTAGGGTTTCGAAGgtaaggaccaattacctttacaggatagagttttttgtcaagtgttctgt Alignment from GeneWise ---GCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggaggggggttgcttcttctgtctccccaggtgagATTGCTATCCGCGTCTTTCGTGCATGCAGAGAACTTGGCATCCGCACAGTAGCTGTGTATTCGGAACAGGATACAGGGCTAACGCACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAACCCTATTGCACATTCCAGACATCATTAGGGTTTCGAAGgtaaggaccaattacctttacaggatagagttttttgtcaagtgttctgt #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTC-CCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCCTCTTC-CATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAggtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCCTCTTCCATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAggtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCCTCTTCCATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCCTCTTCCATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCCTCTTCCATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCCTCTTCCATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCCTCTTCCATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCCTCTTCCATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAG-GCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacttctctggtgcacttgcagaagccttgctttattctgtttgctttagGTAAAGCCATCTTCCAAGATCTTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAACACAGAAGCTC-AGCAGAGGAGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGACATATTGGTATCCCACAAGGAGGCTTCCCCAAGCCATTTCATTCTAAAgtagattaggttgatgtgggtgtaaatcagtctttctttatatttcccca Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacttctctggtgcacttgcagaagccttgctttattctgtttgctttagGTAAAGCCATCTTCCAAGATCTTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAACACAGAAGCTCAGCAGAGGAGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGACATATTGGTATCCCACAAGGAGGCTTCCCCAAGCCATTTCATTCTAAAgtagattaggttgatgtgggtgtaaatcagtctttctgtggtggatgtgt Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacttctctggtgcacttgcagaagccttgctttattctgtttgctttagGTAAAGCCATCTTCCAAGATCTTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAACACAGAAGCTCAGCAGAGGAGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGACATATTGGTATCCCACAAGGAGGCTTCCCCAAGCCATTTCATTCTAAAgtagattaggttgatgtgggtgtaaatcagtctttctttatatttcccca Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGG-CAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacttctctggtgcacttgcagaagccttgctttattctgtttgctttagGTAAAGCCATCTTCCAAGATCTTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAACACAGAAGCTCA-GCAGAGGAGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGACATATTGGTATCCCACAAGGAGGCTTCCCCAAGCCATTTCATTCTAAAgtagattaggttgatgtgggtgtaaatcagtctttctttatatttcccca Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAG-GCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTA---------------------------------------------------- tacttctctggtgcacttgcagaagccttgctttattctgtttgctttagGTAAAGCCATCTTCCAAGATCTTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAACACAGAAGCTCA-GCAGAGGAGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGACATATTGGTATCCCACAAGGAGGCTTCCCCAAGCCATTTCATTCTAAAGTAGATTAGGTTGATGTGGGTGTAAATCAGTCTTTCTTTATATTTCCCCA Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacttctctggtgcacttgcagaagccttgctttattctgtttgctttagGTAAAGCCATCTTCCAAGATCTTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAACACAGAAGCTCAGCAGAGGAGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGACATATTGGTATCCCACAAGGAGGCTTCCCCAAGCCATTTCATTCTAAAgtagattaggttgatgtgggtgtaaatcagtctttctttatatttcccca Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacttctctggtgcacttgcagaagccttgctttattctgtttgctttagGTAAAGCCATCTTCCAAGATCTTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAACACAGAAGCTCAGCAGAGGAGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGACATATTGGTATCCCACAAGGAGGCTTCCCCAAGCCATTTCATTCTAAAgtagattaggttgatgtgggtgtaaatcagtctttctttatatttcccca Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacttctctggtgcacttgcagaagccttgctttattctgtttgctttagGTAAAGCCATCTTCCAAGATCTTGGGTGACCTAGCCCAGTTCAAGGTGCAGAATGGATCAAGTCGGACTGAACACAGAAGCTCAGCAGAGGAGCTCTCCTTCCCCTGCTCTGTAGTGGAGTTCCTACAGGGACATATTGGTATCCCACAAGGAGGCTTCCCCAAGCCATTTCATTCTAAAgtagattaggttgatgtgggtgtaaatcagtctttctttatatttcccca #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGG-GGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA gaacatcatgcacccaattttgaaggagagctcaactgtatttctcccagGTTAAGCTAGAACAACGGAAAAA-ACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGCCAGCTTCGATCAATTTTGGTCAAAGACACGCAGGCCATGAAGgtaagaccaagtttgatttgctgattgacttttgttctatagGAAATGCA Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA gaacatcatgcacccaattttgaaggagagctcaactgtatttctcccagGTTAAGCTAGAACAACGGAAAAAACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGCCAGCTTCGATCAATTTTGGTCAAAGACACGCAGGCCATGAAGgtaagaccaagtttgatttgatccccctaccactccccgcagGAAATGCA Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA gaacatcatgcacccaattttgaaggagagctcaactgtatttctcccagGTTAAGCTAGAACAACGGAAAAAACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGCCAGCTTCGATCAATTTTGGTCAAAGACACGCAGGCCATGAAGgtaagaccaagtttgatttgctgattgacttttgttctatagGAAATGCA Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA gaacatcatgcacccaattttgaaggagagctcaactgtatttctcccagGTTAAGCTAGAACAACGGAAAAAACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGCCAGCTTCGATCAATTTTGGTCAAAGACACGCAGGCCATGAAGgtaagaccaagtttgatttgctgattgacttttgttctatagGAAATGCA Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA gaacatcatgcacccaattttgaaggagagctcaactgtatttctcccagGTTAAGCTAGAACAACGGAAAAAACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGCCAGCTTCGATCAATTTTGGTCAAAGACACGCAGGCCATGAAGgtaagaccaagtttgatttgctgattgacttttgttctatagGAAATGCA Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA gaacatcatgcacccaattttgaaggagagctcaactgtatttctcccagGTTAAGCTAGAACAACGGAAAAAACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGCCAGCTTCGATCAATTTTGGTCAAAGACACGCAGGCCATGAAGgtaagaccaagtttgatttgctgattgacttttgttctatagGAAATGCA Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA gaacatcatgcacccaattttgaaggagagctcaactgtatttctcccagGTTAAGCTAGAACAACGGAAAAAACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGCCAGCTTCGATCAATTTTGGTCAAAGACACGCAGGCCATGAAGgtaagaccaagtttgatttgctgattgacttttgttctatagGAAATGCA Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA gaacatcatgcacccaattttgaaggagagctcaactgtatttctcccagGTTAAGCTAGAACAACGGAAAAAACTGCACATTAAAGCATTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGCCAGCTTCGATCAATTTTGGTCAAAGACACGCAGGCCATGAAGgtaagaccaagtttgatttgctgattgacttttgttctatagGAAATGCA #### Pdcd11_ID10119_13 --> 0 - 0 Original Alignment GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAG-AAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggaccagtgactgaaaggggcatcttctactcccagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAACCTTCAAAGGAGAAAATGCCCCTCTCCTTTAGATTGTTAGGTGACTCTCAGCCCAAAGATCCTGGTGTTGAGACCAGTCAGCAAAAAGA-AGAAGGCGTGCACATTGGCCAGgtatctcccctatgattttgacagatggtaatatcatcacagcgtctgag Alignment from CESAR GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggaccagtgactgaaaggggcatcttctactcccagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAACCTTCAAAGGAGAAAATGCCCCTCTCCTTTAGATTGTTAGGTGACTCTCAGCCCAAAGATCCTGGTGTTGAGACCAGTCAGCAAAAAGAAGAAGGCGTGCACATTGGCCAGgtatctcccctatgattttgacagatggtaatatcatcacagcgtctgag Alignment from Spaln_aa2Genome AGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tgccttaagGACCAGTGACTGAAAGGGGC---ATCTTCTACTCC---CAGGTGGTAAAGGTGGCTGTGTTGAGCTGTGAACCTTCAAAGGAGAAAATGCCCCTCTCCTTTAGATTGTTAGGTGACTCTCAGCCCAAAGATCCTGGTGTTGAGACCAGTCAGCAAAAAGAAGAAGGCGTGCACATTGGCCAGgtatctcccctatgattttgacagatggtaatatcatcacagcgtctgag Alignment from Spaln_nt2Genome --CCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaagGACCAGTGACTGAAAGGGGCATCTTCTACTCCCAGGTGGTAAAGGTGGCTGTGTTGAGCTGTGAACCTTCAAAGGAGAAAATGCCCCTCTCCTTTAGATTGTTAGGTGACTCTCAGCCCAAAGATCCTGGTGTTGAGACCAGTCAGCAAAAAGAAGAAGGCGTGCACATTGGCCAGgtatctcccctatgattttgacagatggtaatatcatcacagcgtctgag Alignment from Pairagon GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggaccagtgactgaaaggggcatcttctactcccagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAACCTTCAAAGGAGAAAATGCCCCTCTCCTTTAGATTGTTAGGTGACTCTCAGCCCAAAGATCCTGGTGTTGAGACCAGTCAGCAAAAAGAAGAAGGCGTGCACATTGGCCAGgtatctcccctatgattttgacagatggtaatatcatcacagcgtctgag Alignment from Exonerate_protein2genome AGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acAAATTGCCTTAAGGACCAGTGACTGAAAGGGGCATCTTCTACTCCCAGGTGGTAAAGGTGGCTGTGTTGAGCTGTGAACCTTCAAAGGAGAAAATGCCCCTCTCCTTTAGATTGTTAGGTGACTCTCAGCCCAAAGATCCTGGTGTTGAGACCAGTCAGCAAAAAGAAGAAGGCGTGCACATTGGCCAGgtatctcccctatgattttgacagatggtaatatcatcacagcgtctgag Alignment from Exonerate_coding2genome CCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggaCCAGTGACTGAAAGGGGCATCTTCTACTCCCAGGTGGTAAAGGTGGCTGTGTTGAGCTGTGAACCTTCAAAGGAGAAAATGCCCCTCTCCTTTAGATTGTTAGGTGACTCTCAGCCCAAAGATCCTGGTGTTGAGACCAGTCAGCAAAAAGAAGAAGGCGTGCACATTGGCCAGgtatctcccctatgattttgacagatggtaatatcatcacagcgtctgag Alignment from GeneWise GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG acaaattgccttaaggaccagtgactgaaaggggcatcttctactcccagGTGGTAAAGGTGGCTGTGTTGAGCTGTGAACCTTCAAAGGAGAAAATGCCCCTCTCCTTTAGATTGTTAGGTGACTCTCAGCCCAAAGATCCTGGTGTTGAGACCAGTCAGCAAAAAGAAGAAGGCGTGCACATTGGCCAGgtatctcccctatgattttgacagatggtaatatcatcacagcgtctgag #### Pdcd11_ID10129_23 --> 0 - 1 Original Alignment GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGAC-CCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCCGGAAGTCC-TAGGGCTTCGCTATGTCTGTCACTCATAggtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from CESAR GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCCGGAAGTCCTAGGGCTTCGCTATGTCTGTCACTCATAggtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Spaln_aa2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCCGGAAGTCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Spaln_nt2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCCGGAAGTCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Pairagon GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCCGGAAGTCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Exonerate_protein2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCCGGAAGTCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Exonerate_coding2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCCGGAAGTCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from GeneWise GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCCGGAAGTCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAG-TCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG tatgtgaatggtttccatgtaggtagattctcatatttcactgtgaataggGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTATTAAATCTGGAAAACATGTACGGCTCCCAGGCACTCAC-GACAAATGTTTTTGATCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAGATACAAGgtaagatgttggccacattatcaatgcagtttatcctgcacccttgcctt Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG tatgtgaatggtttccatgtaggtagattctcatatttcactgtgaataggGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTATTAAATCTGGAAAACATGTACGGCTCCCAGGCACTCACGACAAATGTTTTTGATCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAGATACAAGgtaagatgttggccacattatcaatgcagtttatcctgcacccttgcctt Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG tatgtgaatggtttccatgtaggtagattctcatatttcactgtgaatagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTATTAAATCTGGAAAACATGTACGGCTCCCAGGCACTCACGACAAATGTTTTTGATCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAGATACAAGgtaagatgttggccacattatcaatgcagtttatcctgcacccttgcctt Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG tatgtgaatggtttccatgtaggtagattctcatatttcactgtgaatagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTATTAAATCTGGAAAACATGTACGGCTCCCAGGCACTCACGACAAATGTTTTTGATCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAGATACAAGgtaagatgttggccacattatcaatgcagtttatcctgcacccttgcctt Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG tatgtgaatggtttccatgtaggtagattctcatatttcactgtgaatagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTATTAAATCTGGAAAACATGTACGGCTCCCAGGCACTCACGACAAATGTTTTTGATCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAGATACAAGgtaagatgttggccacattatcaatgcagtttatcctgcacccttgcctt Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG tatgtgaatggtttccatgtaggtagattctcatatttcactgtgaatagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTATTAAATCTGGAAAACATGTACGGCTCCCAGGCACTCACGACAAATGTTTTTGATCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAGATACAAGgtaagatgttggccacattatcaatgcagtttatcctgcacccttgcctt Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG tatgtgaatggtttccatgtaggtagattctcatatttcactgtgaatagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTATTAAATCTGGAAAACATGTACGGCTCCCAGGCACTCACGACAAATGTTTTTGATCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAGATACAAGgtaagatgttggccacattatcaatgcagtttatcctgcacccttgcctt Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG tatgtgaatggtttccatgtaggtagattctcatatttcactgtgaatagGGAGGAACAAGAGAAGCTAAATATATGGGTAGCCCTATTAAATCTGGAAAACATGTACGGCTCCCAGGCACTCACGACAAATGTTTTTGATCAAGCTGTCCAATACAATGAATCTCTTAAGGTTTTTCTGCACTTGGATGATATATACACCAAGTCCAAGAGATACAAGgtaagatgttggccacattatcaatgcagtttatcctgcacccttgcctt #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCA-ACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gaccttatattttgggagttgttccagtttttgttttttgttttttttagGCCATTGTGATAGTGTTAGAGTCACAGTGGTG-GAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtacagacagggagatgaggatctcgaacgatttactgcactgaaataag Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gaccttatattttgggagttgttccagtttttgttttttgttttttttagGCCATTGTGATAGTGTTAGAGTCACAGTGGTGGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtacagacagggagatgaggatctcgaacgatttactgcactgaaataag Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gaccttatattttgggagttgttccagtttttgttttttgttttttttagGCCATTGTGATAGTGTTAGAGTCACAGTGGTGGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtacagacagggagatgaggatctcgaacgatttactgcactgaaataag Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gaccttatattttgggagttgttccagtttttgttttttgttttttttagGCCATTGTGATAGTGTTAGAGTCACAGTGGTGGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtacagacagggagatgaggatctcgaacgatttactgcactgaaataag Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCA-ACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gaccttatattttgggagttgttccagtttttgttttttgttttttttagGCCATTGTGATAGTGTTAGAGTCACAGTGGTG-GAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtacagacagggagatgaggatctcgaacgatttactgcactgaaataag Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gaccttatattttgggagttgttccagtttttgttttttgttttttttagGCCATTGTGATAGTGTTAGAGTCACAGTGGTGGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtacagacagggagatgaggatctcgaacgatttactgcactgaaataag Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gaccttatattttgggagttgttccagtttttgttttttgttttttttagGCCATTGTGATAGTGTTAGAGTCACAGTGGTGGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtacagacagggagatgaggatctcgaacgatttactgcactgaaataag Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gaccttatattttgggagttgttccagtttttgttttttgttttttttagGCCATTGTGATAGTGTTAGAGTCACAGTGGTGGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtacagacagggagatgaggatctcgaacgatttactgcactgaaataag #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGG-CTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG agccatgggtgcaccattaaaattacctgggcccttacttaatattttagGTCATCTCAAGATACCTCAGCTTTGTTGCTGTTGCACTACGGCCTGAAGCACA-GAGTTATCTGTACAGTTTAGAGTCCCGGAGGAGTCAAgttctggaatactactgaaagcctggcatttccacaactacacatcgtta Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG agccatgggtgcaccattaaaattacctgggcccttacttaatattttagGTCATCTCAAGATACCTCAGCTTTGTTGCTGTTGCACTACGGCCTGAAGCACAGAGTTATCTGTACAGTTTAGAGTCCCGGAGGAGTCAAgttctggaatactactgaaagcctggcatttccacaactacacatcgtta Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG agccatgggtgcaccattaaaattacctgggcccttacttaatattttagGTCATCTCAAGATACCTCAGCTTTGTTGCTGTTGCACTACGGCCTGAAGCACAGAGTTATCTGTACAGTTTAGAGTCCCGGAGGAGTCAAgttctggaatactactgaaagcctggcatttccacaactacacatcgtta Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGC-TGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG agccatgggtgcaccattaaaattacctgggcccttacttaatattttagGTCATCTCAAGATACCTCAGCTTTGTTGCTGTTGCACTACGGCCTGAAGCACA-GAGTTATCTGTACAGTTTAGAGTCCCGGAGGAGTCAAgttctggaatactactgaaagcctggcatttccacaactacacatcgtta Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGG-CTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG agccatgggtgcaccattaaaattacctgggcccttacttaatattttagGTCATCTCAAGATACCTCAGCTTTGTTGCTGTTGCACTACGGCCTGAAGCACA-GAGTTATCTGTACAGTTTAGAGTCCCGGAGGAGTCAAgttctggaatactactgaaagcctggcatttccacaactacacatcgtta Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG agccatgggtgcaccattaaaattacctgggcccttacttaatattttagGTCATCTCAAGATACCTCAGCTTTGTTGCTGTTGCACTACGGCCTGAAGCACAGAGTTATCTGTACAGTTTAGAGTCCCGGAGGAGTCAAgttctggaatactactgaaagcctggcatttccacaactacacatcgtta Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG agccatgggtgcaccattaaaattacctgggcccttacttaatattttagGTCATCTCAAGATACCTCAGCTTTGTTGCTGTTGCACTACGGCCTGAAGCACAGAGTTATCTGTACAGTTTAGAGTCCCGGAGGAGTCAAgttctggaatactactgaaagcctggcatttccacaactacacatcgtta Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG agccatgggtgcaccattaaaattacctgggcccttacttaatattttagGTCATCTCAAGATACCTCAGCTTTGTTGCTGTTGCACTACGGCCTGAAGCACAGAGTTATCTGTACAGTTTAGAGTCCCGGAGGAGTCAAgttctggaatactactgaaagcctggcatttccacaactacacatcgtta #### Pga5_ID2971_7 --> 1 - 0 Original Alignment cATCTCCATGAAT-GGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagcAATTCCATGAATCGGGGAGG-CATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctagcctgacattcccctcccccagTATTTCCTAAA Alignment from CESAR cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagcAATTCCATGAATCGGGGAGGCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctacaaatgtcctttctgtccacagTATTTCCTAAA Alignment from Spaln_aa2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATCGGGGAGGCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctagcctgacattcccctcccccagTATTTCCTAAA Alignment from Spaln_nt2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATCGGGGAGGCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctagcctgacattcccctcccccagTATTTCCTAAA Alignment from Pairagon CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGG---------------------------------------CGAGTACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATCGGGGAGGCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGGTTTGTGTTTCCGGCTAGCCTGACATTCCCCTCCCCCAGTATTTCCTAAA Alignment from Exonerate_protein2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATCGGGGAGGCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctagcctgacattcccctcccccagTATTTCCTAAA Alignment from Exonerate_coding2genome gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagcaattccatgaatcggggaggcattgcatcagatggtagctgtcaaggcattatggatacaggggcttcattgctgaccaggcctcaaagcaccattgttaatatccagaatgtatttggttccaaggggtctggtgacggtcaggtttgtgtttccggctagcctgacattcccctcccccagtatttcctaaa Alignment from GeneWise CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATCGGGGAGGCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctagcctgacattcccctcccccagTATTTCCTAAA #### Pik3ap1_ID8164_5 --> 2 - 0 Original Alignment acCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCT-GCAAATCCTGTGGAGTTTATGTGTCAG gtcatgagctcgtaccctttcatagggcttacataccgatgtgtctgcagacCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTCGCCAATC-AGTGGAGTTAATGTGTCAGgtaactgcagaccaaagtcagtccaactcaacaccaacatcagcaacata Alignment from CESAR acCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtcatgagctcgtaccctttcatagggcttacataccgatgtgtctgcagacCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTCGCCAATCAGTGGAGTTAATGTGTCAGgtaactgcagaccaaagtcagtccaactcaacaccaacatcagcaacata Alignment from Spaln_aa2Genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtcatgagctcgtaccctttcatagggcttacataccgatgtgtctgcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTCGCCAATCAGTGGAGTTAATGTGTCAGgtaactgcagaccaaagtcagtccaactcaacaccaacatcagcaacata Alignment from Spaln_nt2Genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCT-GCAAATCCTGTGGAGTTTATGTGTCAG gtcatgagctcgtaccctttcatagggcttacataccgatgtgtctgcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTCGCCAAT-CAGTGGAGTTAATGTGTCAGgtaactgcagaccaaagtcagtccaactcaacaccaacatcagcaacata Alignment from Pairagon ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCT---------GTGGAGTTTATGTGTCAG gtcatgagctcgtaccctttcatagggcttacataccgatgtgtctgcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAG---------CCCTCGCCAATCAGTGGAGTTAATGTGTCAGgtaactgcagaccaaagtcagtccaactcaacaccaacatcagcaacata Alignment from Exonerate_protein2genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtcatgagctcgtaccctttcatagggcttacataccgatgtgtctgcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTCGCCAATCAGTGGAGTTAATGTGTCAGgtaactgcagaccaaagtcagtccaactcaacaccaacatcagcaacata Alignment from Exonerate_coding2genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtcatgagctcgtaccctttcatagggcttacataccgatgtgtctgcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTCGCCAATCAGTGGAGTTAATGTGTCAGgtaactgcagaccaaagtcagtccaactcaacaccaacatcagcaacata Alignment from GeneWise ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtcatgagctcgtaccctttcatagggcttacataccgatgtgtctgcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTCGCCAATCAGTGGAGTTAATGTGTCAGgtaactgcagaccaaagtcagtccaactcaacaccaacatcagcaacata #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAG-AACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg aatatgggggtgagcatctttttaacatctgtcgggttttttctttataggtTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGCAATATTG-CCGAGACACCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATggtaggaaagaaaggtaaaatgtaaagaatgatgtgattgatgggtgacat Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg aatatgggggtgagcatctttttaacatctgtcgggttttttctttataggtTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGCAATATTGCCGAGACACCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATggtaggaaagaaaggtaaaatgtaaagaatgatgtgattgatgggtgacat Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctgtcgggttttttctttatagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGCAATATTGCCGAGACACCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtaggaaagaaaggtaaaatgtaaagaatgatgtgattgatgggtgacat Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctgtcgggttttttctttatagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGCAATATTGCCGAGACACCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtaggaaagaaaggtaaaatgtaaagaatgatgtgattgatgggtgacat Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAG-AACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctgtcgggttttttctttatagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGCAATATTG-CCGAGACACCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtaggaaagaaaggtaaaatgtaaagaatgatgtgattgatgggtgacat Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctgtcgggttttttctttatagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGCAATATTGCCGAGACACCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtaggaaagaaaggtaaaatgtaaagaatgatgtgattgatgggtgacat Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctgtcgggttttttctttatagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGCAATATTGCCGAGACACCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtaggaaagaaaggtaaaatgtaaagaatgatgtgattgatgggtgacat Alignment from GeneWise GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctgtcgggttttttctttatagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGCAATATTGCCGAGACACCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtaggaaagaaaggtaaaatgtaaagaatgatgtgattgatgggtgacat #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTG-CAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa attaggtggggtcaacatatgctcttgttttgatgttctcttccttgcagGGACTAGATGGGGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGCCCTGGGGACACCAATTCTAAGCAAGCTGACGTCCCAAACTC-GAGCACTGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACATGTAGCACTGCGGTTGATACCCTGTCCGTCC---TGTGCAGCAGCTTATGCACTTGTCTCCaagtaagagcagagaggaatagtaaatacacataaataaagcaagtaatgat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa attaggtggggtcaacatatgctcttgttttgatgttctcttccttgcagGGACTAGATGGGGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGCCCTGGGGACACCAATTCTAAGCAAGCTGACGTCCCAAACTCGAGCACTGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACATGTAGCACTGCGGTTGATACCCTGTCCGTCC---TGTGCAGCAGCTTATGCACTTGTCTCCaagtaagagcagagaggaatagtaaatacacataaataaagcaagtaatgat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA attaggtggggtcaacatatgctcttgttttgatgttctcttccttgcagGGACTAGATGGGGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGCCCTGGGGACACCAATTCTAAGCAAGCTGACGTCCCAAACTCGAGCACTGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACATGTAGCACTGCGGTTGATACCCTGTCCGTCC---TGTGCAGCAGCTTATGCACTTGTCTCCAAgtaagagcagagaggaatagtaaatacacataaataaagcaagtaatgat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA attaggtggggtcaacatatgctcttgttttgatgttctcttccttgcagGGACTAGATGGGGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGCCCTGGGGACACCAATTCTAAGCAAGCTGACGTCCCAAACTCGAGCACTGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACATGTAGCACTGCGGTTGATACCCTGTCCGTCC---TGTGCAGCAGCTTATGCACTTGTCTCCAAgtaagagcagagaggaatagtaaatacacataaataaagcaagtaatgat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA attaggtggggtcaacatatgctcttgttttgatgttctcttccttgcagGGACTAGATGGGGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGCCCTGGGGACACCAATTCTAAGCAAGCTGACGTCCCAAACTCGAGCACTGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACATGTAGCACTGCGGTTGATACCCTGTCCGTCC---TGTGCAGCAGCTTATGCACTTGTCTCCAAgtaagagcagagaggaatagtaaatacacataaataaagcaagtaatgat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA attaggtggggtcaacatatgctcttgttttgatgttctcttccttgcagGGACTAGATGGGGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGCCCTGGGGACACCAATTCTAAGCAAGCTGACGTCCCAAACTCGAGCACTGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACATGTAGCACTGCGGTTGATACCCTGTCCGTCC---TGTGCAGCAGCTTATGCACTTGTCTCCAAgtaagagcagagaggaatagtaaatacacataaataaagcaagtaatgat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA attaggtggggtcaacatatgctcttgttttgatgttctcttccttgcagGGACTAGATGGGGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGCCCTGGGGACACCAATTCTAAGCAAGCTGACGTCCCAAACTCGAGCACTGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACATGTAGCACTGCGGTTGATACCCTGTCCGTCC---TGTGCAGCAGCTTATGCACTTGTCTCCAAgtaagagcagagaggaatagtaaatacacataaataaagcaagtaatgat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA attaggtggggtcaacatatgctcttgttttgatgttctcttccttgcagGGACTAGATGGGGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGCCCTGGGGACACCAATTCTAAGCAAGCTGACGTCCCAAACTCGAGCACTGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACATGTAGCACTGCGGTTGATACCCTGTCCGTCC---TGTGCAGCAGCTTATGCACTTGTCTCCAAgtaagagcagagaggaatagtaaatacacataaataaagcaagtaatgat #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGC-CCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG cacacacaggtagaaaaaccagcatatttctcgccccccttttatattagGTGGTCTTGATTGGAGATGGAGTTGGTGGCATTCTTGGTTTTGACGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGAGCC-GGGCAGCAGCCACCATGGGAGCATGgtactgttccatttcagggagtcaccagctaagggagccagggctgcagt Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG cacacacaggtagaaaaaccagcatatttctcgccccccttttatattagGTGGTCTTGATTGGAGATGGAGTTGGTGGCATTCTTGGTTTTGACGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGAGCCGGGCAGCAGCCACCATGGGAGCATGgtactgttccatttcagggagtcaccagctaagggagccagggctgcagt Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG cacacacaggtagaaaaaccagcatatttctcgccccccttttatattagGTGGTCTTGATTGGAGATGGAGTTGGTGGCATTCTTGGTTTTGACGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGAGCCGGGCAGCAGCCACCATGGGAGCATGgtactgttccatttcagggagtcaccagctaagggagccagggctgcagt Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG cacacacaggtagaaaaaccagcatatttctcgccccccttttatattagGTGGTCTTGATTGGAGATGGAGTTGGTGGCATTCTTGGTTTTGACGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGAGCCGGGCAGCAGCCACCATGGGAGCATGgtactgttccatttcagggagtcaccagctaagggagccagggctgcagt Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGG-CCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG cacacacaggtagaaaaaccagcatatttctcgccccccttttatattagGTGGTCTTGATTGGAGATGGAGTTGGTGGCATTCTTGGTTTTGACGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGAGCC-GGGCAGCAGCCACCATGGGAGCATGgtactgttccatttcagggagtcaccagctaagggagccagggctgcagt Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG cacacacaggtagaaaaaccagcatatttctcgccccccttttatattagGTGGTCTTGATTGGAGATGGAGTTGGTGGCATTCTTGGTTTTGACGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGAGCCGGGCAGCAGCCACCATGGGAGCATGgtactgttccatttcagggagtcaccagctaagggagccagggctgcagt Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG cacacacaggtagaaaaaccagcatatttctcgccccccttttatattagGTGGTCTTGATTGGAGATGGAGTTGGTGGCATTCTTGGTTTTGACGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGAGCCGGGCAGCAGCCACCATGGGAGCATGgtactgttccatttcagggagtcaccagctaagggagccagggctgcagt Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG cacacacaggtagaaaaaccagcatatttctcgccccccttttatattagGTGGTCTTGATTGGAGATGGAGTTGGTGGCATTCTTGGTTTTGACGCTCTCTGTCGCAGTGCCAGTGCAGGCCCCAGGGAGCCGGGCAGCAGCCACCATGGGAGCATGgtactgttccatttcagggagtcaccagctaagggagccagggctgcagt #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTC-TCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGAT------GGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACag agttagagagccagtattttgaagttggccttggttccttccctctgcagATCACTGAGACACTCCTTACCTG-GGTTGGTTGCCCATTGCGCGACCCACTGGCAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTAACAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATaggtaggaagttctcttttatagcactttgaatataaaaacctggacctata Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACag agttagagagccagtattttgaagttggccttggttccttccctctgcagATCACTGAGACACTCCTTACCTGGGTTGGTTGCCCATTGCGCGACCCACTGGCAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTAACAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATaggtaggaagttctcttttatagcactttgaatataaaaacctggacctatt Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG agttagagagccagtattttgaagttggccttggttccttccctctgcagATCACTGAGACACTCCTTACCTGGGTTGGTTGCCCATTGCGCGACCCACTGGCAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTAACAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGgtaggaagttctcttttatagcactttgaatataaaaacctggacctata Alignment from Spaln_nt2Genome AACAATGAGATGCTC-TCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATG------GGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG agttagagagccagtattttgaagttggccttggttccttccctctgcagATCACTGAGACACTCCTTACCTG-GGTTGGTTGCCCATTGCGCGACCCACTGGCAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTAACAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGgtaggaagttctcttttatagcactttgaatataaaaacctggacctata Alignment from Pairagon AACAATGAGA--------------------TGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATC---CTGATCCTGATGGCTCTCAGAACAG agttagagagccagtattttgaagttggccttggttccttccctctgcagATCACTGAGACACTCCTTACCTGGGTTGGTTGC-----------------CCATTGCGCGACCCACTGGCAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTAACAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGgtaggaagttctcttttatagcactttgaatataaaaacctggacctata Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAGCCTCCAGGTAGCCTCCACAGCTACC agttagagagccagtattttgaagttggccttggttccttccctctgcagATCACTGAGACACTCCTTACCTGGGTTGGTTGCCCATTGCGCGACCCACTGGCAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTAACAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGGTAGGAAGTTCTCTTTTATAGCACTttgaatataaaaacctggacctata Alignment from Exonerate_coding2genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTG------GCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAGCCTCCAGGTAGCCTCCACAGCTACC agttagagagccagtattttgaagttggccttggttccttccctctgcagATCACTGAGACACTCCTTACCTGGGTTGGTTGCCCATTGCGCGACCCACTGGCAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTAACAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGGTAGGAAGTTCTCTTTTATAGCACTttgaatataaaaacctggacctata Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGAT------GGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG agttagagagccagtattttgaagttggccttggttccttccctctgcagATCACTGAGACACTCCTTACCTGGGTTGGTTGCCCATTGCGCGACCCACTGGCAGATGCAGATGGGGTGGAAGTGCTTGGTCATGCTAGTCCAGAACTAACAGCTCTACTAGGCCAGTGCACATTCAGTGACATTGCTAACCCTACTGATCCAGATGGCTCACAAAATAGgtaggaagttctcttttatagcactttgaatataaaaacctggacctata #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGAC-ACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC gctttgctgtcattcttcgtatagttgttttccttctccttatatttcagAATGTCACTTCTAACCACAAAGCAAGTGACCACTGTGA-ATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGTATGGACCACTGGATGTAGTTACACTCACCAGAGAAGAGgtatttccaacattatgttcttcagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC gctttgctgtcattcttcgtatagttgttttccttctccttatatttcagAATGTCACTTCTAACCACAAAGCAAGTGACCACTGTGAATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGTATGGACCACTGGATGTAGTTACACTCACCAGAGAAGAGgtcatgttttttctcatgtgcacagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC gctttgctgtcattcttcgtatagttgttttccttctccttatatttcagAATGTCACTTCTAACCACAAAGCAAGTGACCACTGTGAATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGTATGGACCACTGGATGTAGTTACACTCACCAGAGAAGAGGTATTTCCAACATTATGTTCTTCAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGC gctttgctgtcattcttcgtatagttgttttccttctccttatatttcagAATGTCACTTCTAACCACAAAGCAAGTGACCACTGTGAATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGTATGGACCACTGGATGTAGTTACACTCACCAGAGAAGAGGTATTTCCAACATTATGTTCTTCAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGC gctttgctgtcattcttcgtatagttgttttccttctccttatatttcagAATGTCACTTCTAACCACAAAGCAAGTGACCACTGTGAATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGTATGGACCACTGGATGTAGTTACACTCACCAGAGAAGAGGTATTTCCAACATTATGTTCTTCAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTG gctttgctgtcattcttcgtatagttgttttccttctccttatatttcagAATGTCACTTCTAACCACAAAGCAAGTGACCACTGTGAATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGTATGGACCACTGGATGTAGTTACACTCACCAGAGAAGAGGTAtttccaacattatgttcttcaggttgatgtctatgtcatgacacagc Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTG gctttgctgtcattcttcgtatagttgttttccttctccttatatttcagAATGTCACTTCTAACCACAAAGCAAGTGACCACTGTGAATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGTATGGACCACTGGATGTAGTTACACTCACCAGAGAAGAGGTAtttccaacattatgttcttcaggttgatgtctatgtcatgacacagc Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG---------------------------GTGGATGTCTACGTCATGACACAGC gctttgctgtcattcttcgtatagttgttttccttctccttatatttcagAATGTCACTTCTAACCACAAAGCAAGTGACCACTGTGAATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGTATGGACCACTGGATGTAGTTACACTCACCA--GAGAAGAGGTATTTCCAACATTATGTTCTTCAGGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGC-GACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag cattcctgctaaatactaacttagactgtattttatattttgtcttttaggGGTGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGTCGACCCCA-GGTGCGAGCTGGAGCCGTAGATGTGGTGaggtgagtccagacttctgtgccatatgctgatcttctgtctgtggggtggt Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag cattcctgctaaatactaacttagactgtattttatattttgtcttttaggGGTGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGTCGACCCCAGGTGCGAGCTGGAGCCGTAGATGTGGTGaggtgagtccagacttctgtgccatatgctgatcttctgtctgtggggtggt Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgctaaatactaacttagactgtattttatattttgtcttttagGGGTGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGTCGACCCCAGGTGCGAGCTGGAGCCGTAGATGTGGTGAGgtgagtccagacttctgtgccatatgctgatcttctgtctgtggggtggt Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgctaaatactaacttagactgtattttatattttgtcttttagGGGTGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGTCGACCCCAGGTGCGAGCTGGAGCCGTAGATGTGGTGAGgtgagtccagacttctgtgccatatgctgatcttctgtctgtggggtggt Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgctaaatactaacttagactgtattttatattttgtcttttagGGGTGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGTCGACCCCAGGTGCGAGCTGGAGCCGTAGATGTGGTGAGgtgagtccagacttctgtgccatatgctgatcttctgtctgtggggtggt Alignment from Exonerate_protein2genome cattcctgctaaatactaacttagactgtattttatattttgtcttttaggggtgaccacacatatgctgaatgttgcttaaccattgtctccagaggtgctgaagcagtggttttcagcattgatggttcttttactgcaagtgtctcaatcatgggtagtcgaccccaggtgcgagctggagccgtagatgtggtgaggtgagtccagacttctgtgccatatgctgatcttctgtctgtggggtggt Alignment from Exonerate_coding2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgctaaatactaacttagactgtattttatattttgtcttttagGGGTGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGTCGACCCCAGGTGCGAGCTGGAGCCGTAGATGTGGTGAGgtgagtccagacttctgtgccatatgctgatcttctgtctgtggggtggt Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgctaaatactaacttagactgtattttatattttgtcttttagGGGTGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGTCGACCCCAGGTGCGAGCTGGAGCCGTAGATGTGGTGAGgtgagtccagacttctgtgccatatgctgatcttctgtctgtggggtggt #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTC-TTCTTCGTCTTCTTCGTGCTCCTG atgagagccttgtacacacagagtgctcctctctccctccgtgttttcagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTTGGCCCTGTGTACTTTGTCACCTATGTCCTTCT-CGTCTTCTTTGTGCTTCTGgtacttataacttaaagatctgtgtgctatatttctgttgggtatattct Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagccttgtacacacagagtgctcctctctccctccgtgttttcagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTTGGCCCTGTGTACTTTGTCACCTATGTCCTTCTCGTCTTCTTTGTGCTTCTGgtacttataacttaaagatctgtgtgctatatttctgttgggtatattct Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagccttgtacacacagagtgctcctctctccctccgtgttttcagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTTGGCCCTGTGTACTTTGTCACCTATGTCCTTCTCGTCTTCTTTGTGCTTCTGgtacttataacttaaagatctgtgtgctatatttctgttgggtatattct Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagccttgtacacacagagtgctcctctctccctccgtgttttcagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTTGGCCCTGTGTACTTTGTCACCTATGTCCTTCTCGTCTTCTTTGTGCTTCTGgtacttataacttaaagatctgtgtgctatatttctgttgggtatattct Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagccttgtacacacagagtgctcctctctccctccgtgttttcagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTTGGCCCTGTGTACTTTGTCACCTATGTCCTTCTCGTCTTCTTTGTGCTTCTGgtacttataacttaaagatctgtgtgctatatttctgttgggtatattct Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagccttgtacacacagagtgctcctctctccctccgtgttttcagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTTGGCCCTGTGTACTTTGTCACCTATGTCCTTCTCGTCTTCTTTGTGCTTCTGgtacttataacttaaagatctgtgtgctatatttctgttgggtatattct Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagccttgtacacacagagtgctcctctctccctccgtgttttcagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTTGGCCCTGTGTACTTTGTCACCTATGTCCTTCTCGTCTTCTTTGTGCTTCTGgtacttataacttaaagatctgtgtgctatatttctgttgggtatattct Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagccttgtacacacagagtgctcctctctccctccgtgttttcagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTTGGCCCTGTGTACTTTGTCACCTATGTCCTTCTCGTCTTCTTTGTGCTTCTGgtacttataacttaaagatctgtgtgctatatttctgttgggtatattct #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment t gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCG-GTAAACTCCATCAGACGG tgtaagtaccctgagaagcaggccaatatggttgtgctaactttttacagaGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAA-TTCCAACAGACAGgtaaaagggacttgtctttgtcaataacttcctttgtcaccaacagagac Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG tgtaggcaccctgagaagcaggccaatatggttgtgctaactttttacagaGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaagggacttgtctttgtcaataacttcctttgtcaccaacagagac Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG tgtaagtaccctgagaagcaggccaatatggttgtgctaactttttacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaagggacttgtctttgtcaataacttcctttgtcaccaacagagac Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG tgtaagtaccctgagaagcaggccaatatggttgtgctaactttttacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaagggacttgtctttgtcaataacttcctttgtcaccaacagagac Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG tgtaagtaccctgagaagcaggccaatatggttgtgctaactttttacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaagggacttgtctttgtcaataacttcctttgtcaccaacagagac Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG tgtaagtaccctgagaagcaggccaatatggttgtgctaactttttacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaagggacttgtctttgtcaataacttcctttgtcaccaacagagac Alignment from Exonerate_coding2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG tgtaagtaccctgagaagcaggccaatatggttgtgctaactttttacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaagggacttgtctttgtcaataacttcctttgtcaccaacagagac Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG tgtaagtaccctgagaagcaggccaatatggttgtgctaactttttacagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCACATAATTCCAACAGACAGgtaaaagggacttgtctttgtcaataacttcctttgtcaccaacagagac #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTG-GATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag GACAGgtaagagatcaatgtgggatggtatcaccctgcgtggctttccagGCACATCAGTGGGTTAAGGAGGTTGTACTGCGACACAC-CACAATCCAATTTAAGAGGCTAAGGGAACTTAAAGAAaggtactgataagcaggaattcaatttggtatgattccttacatacaattca Alignment from CESAR GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACA---CAGTTCAAGAGGCTGAAGGAGCTGAATGAAag GACAGgtaagtgatcaatgtgggatggtatcaccctgcgtggctttccagGCACATCAGTGGGTTAAGGAGGTTGTACTG---CGACACACCACAATCCAATTTAAGAGGCTAAGGGAACTTAAAGAAaggtactgataagcaggaattcaatttggtatgattccttacatacaattca Alignment from Spaln_aa2Genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtaagagatcaatgtgggatggtatcaccctgcgtggctttccagGCACATCAGTGGGTTAAGGAGGTTGTACTGCGACACACCACAATCCAATTTAAGAGGCTAAGGGAACTTAAAGAAAGgtactgataagcaggaattcaatttggtatgattccttacatacaattca Alignment from Spaln_nt2Genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTG-GATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtaagagatcaatgtgggatggtatcaccctgcgtggctttccagGCACATCAGTGGGTTAAGGAGGTTGTACTGCGACACAC-CACAATCCAATTTAAGAGGCTAAGGGAACTTAAAGAAAGgtactgataagcaggaattcaatttggtatgattccttacatacaattca Alignment from Pairagon GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTG-GATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtaagagatcaatgtgggatggtatcaccctgcgtggctttccagGCACATCAGTGGGTTAAGGAGGTTGTACTGCGACACAC-CACAATCCAATTTAAGAGGCTAAGGGAACTTAAAGAAAGgtactgataagcaggaattcaatttggtatgattccttacatacaattca Alignment from Exonerate_protein2genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtaagagatcaatgtgggatggtatcaccctgcgtggctttccagGCACATCAGTGGGTTAAGGAGGTTGTACTGCGACACACCACAATCCAATTTAAGAGGCTAAGGGAACTTAAAGAAAGgtactgataagcaggaattcaatttggtatgattccttacatacaattca Alignment from Exonerate_coding2genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAG GACAGgtaagagatcaatgtgggatggtatcaccctgcgtggctttccaggcacatcagtgggttaaggaggttgtactgcgacacaccacaatccaatttaagaggctaagggaacttaaagAAAGGTACTGATAAGCAGGAATTCAATTTGGTATGATTCCTTACATACAATTCA Alignment from GeneWise GA---------------------------------------------CAGGCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGGTAAGAGATCAATGTGGGATGGTATCACCCTGCGTGGCTTTCCAGGCACATCAGTGGGTTAAGGAGGTTGTACTGCGACACACCACAATCCAATTTAAGAGGCTAAGGGAACTTAAAGAAAGgtactgataagcaggaattcaatttggtatgattccttacatacaattca #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCA-GATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tctcatttggttgtatcagttagagagttcacgggtgctctgtcctttaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTCGATGTGG-GACCAACTGCAAGCTGGAACATCTACGACAGgtaagtgatcaatgtgggatggtttccgtgtctccccattcccagGCACA Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tctcatttggttgtatcagttagagagttcacgggtgctctgtcctttaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTCGATGTGGGACCAACTGCAAGCTGGAACATCTACGACAGgtaagtgatcaatgtgggatggtatcaccctgcgtggctttccagGCACA Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tctcatttggttgtatcagttagagagttcacgggtgctctgtcctttagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTCGATGTGGGACCAACTGCAAGCTGGAACATCTACGACAGgtaagtgatcaatgtgggatggtttccgtgtctccccattcccagGCACA Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tctcatttggttgtatcagttagagagttcacgggtgctctgtcctttagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTCGATGTGGGACCAACTGCAAGCTGGAACATCTACGACAGgtaagtgatcaatgtgggatggtttccgtgtctccccattcccagGCACA Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCA-GGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tctcatttggttgtatcagttagagagttcacgggtgctctgtcctttagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTCGATGTGG-GACCAACTGCAAGCTGGAACATCTACGACAGgtaagtgatcaatgtgggatggtttccgtgtctccccattcccagGCACA Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tctcatttggttgtatcagttagagagttcacgggtgctctgtcctttagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTCGATGTGGGACCAACTGCAAGCTGGAACATCTACGACAGgtaagtgatcaatgtgggatggtttccgtgtctccccattcccagGCACA Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAGGCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTT tctcatttggttgtatcagttagagagttcacgggtgctctgtcctttagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTCGATGTGGGACCAACTGCAAGCTGGAACATCTACGACAGGTAAGTGATCAATGTGGGATGGTTTCCGTGTCTCCCCATTCCCAGGCACA Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGA---------------------------------------------CAGGCTCA tctcatttggttgtatcagttagagagttcacgggtgctctgtcctttagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTCGATGTGGGACCAACTGCAAGCTGGAACATCTACGACAGGTAAGTGATCAATGTGGGATGGTTTCCGTGTCTCCCCATTCCCAGGCACA #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCA-GGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagatCTGCCAATGCAGCTCAATGCACGGTGTTG-TGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagatCTGCCAATGCAGCTCAATGCACGGTGTTGTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCACGGTGTTGTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCACGGTGTTGTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTT-TGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCACG-GTGTTGTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCACGGTGTTGTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCACGGTGTTGTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCACGGTGTTGTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTC-GAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catcaggttggtctttcaggtgattgctctttctaattctttttccttagaaAGGAACAAGTGTTTTCAGAATGT-ATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGgagtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from CESAR aaAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catcaggttggtctttcaggtgattgctctttctaattctttttccttagaaAGGAACAAGTGTTTTCAGAATGTATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGgagtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTCAGAATGTATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTCAGAATGTATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Pairagon AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTCAGAATGTATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTCAGAATGTATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTCAGAATGTATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from GeneWise AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTCAGAATGTATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAAC------CAGAAGCAGAGAGAC-CCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg agtagtagggagctaccatcatgagtgtcttagcccacccttccccacagaGGCATGAAAGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCCAA-ACTG---------------------------TCCTCACAAGCTCGTCTACTAATAGAAGAGTATGAGGCTAACAGACAGTTTCTGGAGTGTggtaggtccacacaggtaagatagttgtacgtactagtgggatctgctttg Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg agtagtagggagctaccatcatgagtgtcttagcccacccttccccacagaGGCATGAAAGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCCAAACTG---------------------------TCCTCACAAGCTCGTCTACTAATAGAAGAGTATGAGGCTAACAGACAGTTTCTGGAGTGTggtaggtccacacaggtaagatagttgtacgtactagtgggatctgctttg Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtagggagctaccatcatgagtgtcttagcccacccttccccacagAGGCATGAAAGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCCAAACTG---------------------------TCCTCACAAGCTCGTCTACTAATAGAAGAGTATGAGGCTAACAGACAGTTTCTGGAGTGTGgtaggtccacacaggtaagatagttgtacgtactagtgggatctgctttg Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtagggagctaccatcatgagtgtcttagcccacccttccccacagAGGCATGAAAGGCAAGCCTTACCT---TCTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCCAAACT---------------------------GTCCTCACAAGCTCGTCTACTAATAGAAGAGTATGAGGCTAACAGACAGTTTCTGGAGTGTGgtaggtccacacaggtaagatagttgtacgtactagtgggatctgctttg Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtagggagctaccatcatgagtgtcttagcccacccttccccacagAGGCATGAAAGGCAAGCCTTACCT---TCTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCCAAACT---------------------------GTCCTCACAAGCTCGTCTACTAATAGAAGAGTATGAGGCTAACAGACAGTTTCTGGAGTGTGgtaggtccacacaggtaagatagttgtacgtactagtgggatctgctttg Alignment from Exonerate_protein2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAG agtagtagggagctaccatcatgagtgtcttagcccacccttccccacagAGGCATGAAAGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCCAAACTGTCCTCACAAGCTCGTCTACTAATAGAAGAGTATGAGGCTAACAGACAGTTTCTGGAGTGTGGTAGGTCCACACAGgtaagatagttgtacgtactagtgggatctgctttg Alignment from Exonerate_coding2genome agtagtagggagctaccatcatgagtgtcttagcccacccttccccacagaggcatgaaaggcaagccttaccttctggagcagcttatggactttgtgaaccaacaagagaagcagagagaccccaaactgtcctcacaagctcgtctactaatagaagagtatgaggctaacagacagtttctggagtgtggtaggtccacacaggtaagatagttgtacgtactagtgggatctgctttg Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtagggagctaccatcatgagtgtcttagcccacccttccccacagAGGCATGAAAGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCCAAACTG---------------------------TCCTCACAAGCTCGTCTACTAATAGAAGAGTATGAGGCTAACAGACAGTTTCTGGAGTGTGgtaggtccacacaggtaagatagttgtacgtactagtgggatctgctttg #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGATGAGTTTCCCTTG-GAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tgttgggtcaatattctcatcctgccatacccccaatgtcttcggtgcagtGAATCCATTCGCCCTGATGAATTTCCTTTGCGAAG-TTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGatgtagggaagtcatcccaggtcatgggtggctgtgaaatcccattgaaaaa Alignment from CESAR tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tgttgggtcaatattctcatcctgccatacccccaatgtcttcggtgcagtGAATCCATTCGCCCTGATGAATTTCCTTTGCGAAGTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGatgtagggaagtcatcccaggtcatgggtggctgtgaaatcccattgaaaaa Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttgggtcaatattctcatcctgccatacccccaatgtcttcggtgcagTGAATCCATTCGCCCTGATGAATTTCCTTTGCGAAGTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtagggaagtcatcccaggtcatgggtggctgtgaaatcccattgaaaaa Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttgggtcaatattctcatcctgccatacccccaatgtcttcggtgcagTGAATCCATTCGCCCTGATGAATTTCCTTTGCGAAGTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtagggaagtcatcccaggtcatgggtggctgtgaaatcccattgaaaaa Alignment from Pairagon TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttgggtcaatattctcatcctgccatacccccaatgtcttcggtgcagTGAATCCATTCGCCCTGATGAATTTCCTTTGCGAAGTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtagggaagtcatcccaggtcatgggtggctgtgaaatcccattgaaaaa Alignment from Exonerate_protein2genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttgggtcaatattctcatcctgccatacccccaatgtcttcggtgcagTGAATCCATTCGCCCTGATGAATTTCCTTTGCGAAGTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtagggaagtcatcccaggtcatgggtggctgtgaaatcccattgaaaaa Alignment from Exonerate_coding2genome tgttgggtcaatattctcatcctgccatacccccaatgtcttcggtgcagtgaatccattcgccctgatgaatttcctttgcgaagttttgaacggttcttgaataaactgtgtctgcgagcagatattgacaagattgtgctggagatgtagggaagtcatcccaggtcatgggtggctgtgaaatcccattgaaaaa Alignment from GeneWise TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttgggtcaatattctcatcctgccatacccccaatgtcttcggtgcagTGAATCCATTCGCCCTGATGAATTTCCTTTGCGAAGTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtagggaagtcatcccaggtcatgggtggctgtgaaatcccattgaaaaa #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGG-GTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tgctgatgtctgtctaaccatttgaacttgtcttttccactggactttagcATTCTTAAGATGTTCTCAGCAGATAAGAAGTGCCGTAGAGA-CACGCTGGAATCCTGTGGTCTCAACTTGAACCGAgtgtgagtgtcaagcccagtgtggcagttgggtcagattggctactgccatc Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAG---CGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tgctgatgtctgtctaaccatttgaacttgtcttttccactggactttagcATTCTTAAGATGTTCTCAGCAGATAAGAAGTGCCGTAGAGACACG---CTGGAATCCTGTGGTCTCAACTTGAACCGAgtgtgagtgtcaagcccagtgtggcagttgggtcagattggctactgccatc Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtctaaccatttgaacttgtcttttccactggactttagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGCCGTAGAGACACGCTGGAATCCTGTGGTCTCAACTTGAACCGAGTgtgagtgtcaagcccagtgtggcagttgggtcagattggctactgccatc Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtctaaccatttgaacttgtcttttccactggactttagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGCCGTAGAGACACGCTGGAATCCTGTGGTCTCAACTTGAACCGAGTgtgagtgtcaagcccagtgtggcagttgggtcagattggctactgccatc Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCG-GGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtctaaccatttgaacttgtcttttccactggactttagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGCCGTAGAGAC-ACGCTGGAATCCTGTGGTCTCAACTTGAACCGAGTgtgagtgtcaagcccagtgtggcagttgggtcagattggctactgccatc Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtctaaccatttgaacttgtcttttccactggactttagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGCCGTAGAGACACGCTGGAATCCTGTGGTCTCAACTTGAACCGAGTgtgagtgtcaagcccagtgtggcagttgggtcagattggctactgccatc Alignment from Exonerate_coding2genome tgctgatgtctgtctaaccatttgaacttgtcttttccactggactttagcattcttaagatgttctcagcagataagaagtgccgtagagacacgctggaatcctgtggtctcaacttgaaccgagtgtgagtgtcaagcccagtgtggcagttgggtcagattggctactgccatc Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtctaaccatttgaacttgtcttttccactggactttagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGCCGTAGAGACACGCTGGAATCCTGTGGTCTCAACTTGAACCGAGTgtgagtgtcaagcccagtgtggcagttgggtcagattggctactgccatc #### Plcb3_ID1925_6 --> 1 - 2 Original Alignment aTACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGaa tttgtatcacagacacaacacatgatccttgtttatgccctgccattcagaTACACAAAGCTAAAGCTGCAGCGGCA-TCAGGATGGGCGGATTCCAGTCAAGaagtcaggtcccatgcccatgttatcttcccagcatccctaacattcgtcta Alignment from CESAR aTACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGaa tttgtatcacagacacaacacatgatccttgtttatgccctgccattcagaTACACAAAGCTAAAGCTGCAGCGGCATCAGGATGGGCGGATTCCAGTCAAGaagtcaggtcccatgcccatgttatcttcccagcatccctaacattcgtcta Alignment from Spaln_aa2Genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtatcacagacacaacacatgatccttgtttatgccctgccattcagATACACAAAGCTAAAGCTGCAGCGGCATCAGGATGGGCGGATTCCAGTCAAGAAgtcaggtcccatgcccatgttatcttcccagcatccctaacattcgtcta Alignment from Spaln_nt2Genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtatcacagacacaacacatgatccttgtttatgccctgccattcagATACACAAAGCTAAAGCTGCAGCGGCATCAGGATGGGCGGATTCCAGTCAAGAAgtcaggtcccatgcccatgttatcttcccagcatccctaacattcgtcta Alignment from Pairagon ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtatcacagacacaacacatgatccttgtttatgccctgccattcagATACACAAAGCTAAAGCTGCAGCGGCATCAGGATGGGCGGATTCCAGTCAAGAAgtcaggtcccatgcccatgttatcttcccagcatccctaacattcgtcta Alignment from Exonerate_protein2genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtatcacagacacaacacatgatccttgtttatgccctgccattcagATACACAAAGCTAAAGCTGCAGCGGCATCAGGATGGGCGGATTCCAGTCAAGAAgtcaggtcccatgcccatgttatcttcccagcatccctaacattcgtcta Alignment from Exonerate_coding2genome tttgtatcacagacacaacacatgatccttgtttatgccctgccattcagatacacaaagctaaagctgcagcggcatcaggatgggcggattccagtcaagaagtcaggtcccatgcccatgttatcttcccagcatccctaacattcgtcta Alignment from GeneWise ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtatcacagacacaacacatgatccttgtttatgccctgccattcagATACACAAAGCTAAAGCTGCAGCGGCATCAGGATGGGCGGATTCCAGTCAAGAAgtcaggtcccatgcccatgttatcttcccagcatccctaacattcgtcta #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGT-CCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG cacaccacttttggggaacattttgaactaactgtcttaacttcttgtagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCCTG-CACACGTCTGGAGGAGAGATTGATG---------ACTGGGCCAGATTTAGTAACGACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtaagcacagcctgatctccatattgaaggcattagttcattcaagcctt Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG cacaccacttttggggaacattttgaactaactgtcttaacttcttgtagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCCTGCACACGTCTGGAGGAGAGATTGATGACT---------GGGCCAGATTTAGTAACGACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtaagcacagcctgatctccatattgaaggcattagttcattcaagcctt Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG cacaccacttttggggaacattttgaactaactgtcttaacttcttgtagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCCTGCACACGTCTGGAGGAGAGATTGATGACT---------GGGCCAGATTTAGTAACGACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtaagcacagcctgatctccatattgaaggcattagttcattcaagcctt Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG cacaccacttttggggaacattttgaactaactgtcttaacttcttgtagGATCCTAAGATTCGTGAAGT------GTTTGGTGGCCCCTGCACACGTCTGGAGGAGAGATTGATGA---------CTGGGCCAGATTTAGTAACGACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtaagcacagcctgatctccatattgaaggcattagttcattcaagcctt Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG cacaccacttttggggaacattttgaactaactgtcttaacttcttgtagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCCTGCACACGTCTGGAGGAGAGATTGATGA---------CTGGGCCAGATTTAGTAACGACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtaagcacagcctgatctccatattgaaggcattagttcattcaagcctt Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG cacaccacttttggggaacattttgaactaactgtcttaacttcttgtagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCCTGCACACGTCTGGAGGAGAGATTGATGACT---------GGGCCAGATTTAGTAACGACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtaagcacagcctgatctccatattgaaggcattagttcattcaagcctt Alignment from Exonerate_coding2genome cacaccacttttggggaacattttgaactaactgtcttaacttcttgtaggatcctaagattcgtgaagtgtttggtggcccctgcacacgtctggaggagagattgatgactgggccagatttagtaacgaccacattcgtgaatttcatggcagtgcaagatggtacagttaaggtaagcacagcctgatctccatattgaaggcattagttcattcaagcctt Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG cacaccacttttggggaacattttgaactaactgtcttaacttcttgtagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCCTGCACACGTCTGGAGGAGAGATTGATGACT---------GGGCCAGATTTAGTAACGACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtaagcacagcctgatctccatattgaaggcattagttcattcaagcctt #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACA-AGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACACAGGACAG-TCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACACAGGACAGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACACAGGACAGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACA-AGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACACAGGACA-GTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACA-AGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACACAGGACA-GTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACACAGGACAGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Exonerate_coding2genome taaatcggtggacaaccttgttccttgatctctgttttggtgcctcataggaggtggacacactggatatcagctcgatcagaggtacacaggacagtcgttatgcccacctgcccaaagtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACACAGGACAGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca #### Plekhs1_ID12098_3 --> 0 - 2 Original Alignment ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTT-TCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg cattgactttactgacatcaactagtgcaagaagggcttttcttttttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTCTCTT-TTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATaggtgagtatttgagcaatgctcacactaaaagcactagattttgagtacca Alignment from CESAR ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg cattgactttactgacatcaactagtgcaagaagggcttttcttttttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTCTCTTTTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATaggtgagtatttgagcaatgctcacactaaaagcactagattttgagtacca Alignment from Spaln_aa2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattgactttactgacatcaactagtgcaagaagggcttttcttttttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTCTCTTTTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtgagtatttgagcaatgctcacactaaaagcactagattttgagtacca Alignment from Spaln_nt2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattgactttactgacatcaactagtgcaagaagggcttttcttttttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTCTCTTTTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtgagtatttgagcaatgctcacactaaaagcactagattttgagtacca Alignment from Pairagon ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattgactttactgacatcaactagtgcaagaagggcttttcttttttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTCTCTTTTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtgagtatttgagcaatgctcacactaaaagcactagattttgagtacca Alignment from Exonerate_protein2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattgactttactgacatcaactagtgcaagaagggcttttcttttttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTCTCTTTTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtgagtatttgagcaatgctcacactaaaagcactagattttgagtacca Alignment from Exonerate_coding2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattgactttactgacatcaactagtgcaagaagggcttttcttttttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTCTCTTTTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtgagtatttgagcaatgctcacactaaaagcactagattttgagtacca Alignment from GeneWise ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattgactttactgacatcaactagtgcaagaagggcttttcttttttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTCTCTTTTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtgagtatttgagcaatgctcacactaaaagcactagattttgagtacca #### Pnlip_ID12748_7 --> 2 - 1 Original Alignment gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGA-TGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gtctgggctttgaataatctacgggccttcgtgtgtctcgtacaatacaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGACTTCTTCCCCAATGAAGGAATTGAAATGCCAGGACTGCCAGA-AAATACTCTTTCCCAGATTGTTGATATTGATGGGATCTGGGAAggtgagtgcttgtgtagctgaaataaactataatgcaattaattctcttga Alignment from CESAR gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gtctgggctttgaataatctacgggccttcgtgtgtctcgtacaatacaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGACTTCTTCCCCAATGAAGGAATTGAAATGCCAGGACTGCCAGAAAATACTCTTTCCCAGATTGTTGATATTGATGGGATCTGGGAAggtgagtgcttgtgtagctgaaataaactataatgcaattaattctcttga Alignment from Spaln_aa2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtctgggctttgaataatctacgggccttcgtgtgtctcgtacaatacagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGACTTCTTCCCCAATGAAGGAATTGAAATGCCAGGACTGCCAGAAAATACTCTTTCCCAGATTGTTGATATTGATGGGATCTGGGAAGgtgagtgcttgtgtagctgaaataaactataatgcaattaattctcttga Alignment from Spaln_nt2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtctgggctttgaataatctacgggccttcgtgtgtctcgtacaatacagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGACTTCTTCCCCAATGAAGGAATTGAAATGCCAGGACTGCCAGAAAATACTCTTTCCCAGATTGTTGATATTGATGGGATCTGGGAAGgtgagtgcttgtgtagctgaaataaactataatgcaattaattctcttga Alignment from Pairagon GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGA-TGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtctgggctttgaataatctacgggccttcgtgtgtctcgtacaatacagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGACTTCTTCCCCAATGAAGGAATTGAAATGCCAGGACTGCCAGAA-AATACTCTTTCCCAGATTGTTGATATTGATGGGATCTGGGAAGgtgagtgcttgtgtagctgaaataaactataatgcaattaattctcttga Alignment from Exonerate_protein2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtctgggctttgaataatctacgggccttcgtgtgtctcgtacaatacagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGACTTCTTCCCCAATGAAGGAATTGAAATGCCAGGACTGCCAGAAAATACTCTTTCCCAGATTGTTGATATTGATGGGATCTGGGAAGgtgagtgcttgtgtagctgaaataaactataatgcaattaattctcttga Alignment from Exonerate_coding2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtctgggctttgaataatctacgggccttcgtgtgtctcgtacaatacagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGACTTCTTCCCCAATGAAGGAATTGAAATGCCAGGACTGCCAGAAAATACTCTTTCCCAGATTGTTGATATTGATGGGATCTGGGAAGgtgagtgcttgtgtagctgaaataaactataatgcaattaattctcttga Alignment from GeneWise GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtctgggctttgaataatctacgggccttcgtgtgtctcgtacaatacagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGACTTCTTCCCCAATGAAGGAATTGAAATGCCAGGACTGCCAGAAAATACTCTTTCCCAGATTGTTGATATTGATGGGATCTGGGAAGgtgagtgcttgtgtagctgaaataaactataatgcaattaattctcttga #### Pnlip_ID12752_11 --> 1 - 2 Original Alignment gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATC-AACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt caccagggactaaacaaatggctcaagtctttcttttcttctttttccagg------------------------GATGGCAATGAATTTGAGTCTGAA------GTTGGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTCAACCCAA-ACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAgtgtaggttacttgtgtaccaaaagacagcagggcgtagcttaaagtcacat Alignment from CESAR gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt caccagggactaaacaaatggctcaagtctttcttttcttctttttccaggGAT------------------------GGCAATGAATTTGAGTCT------GAAGTTGGAGATTTGCAGAGGGTCAAATTTATT---GGCAACAATGTAATTCAACCCAAACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAgtgtaggttacttgtgtaccaaaagacagcagggcgtagcttaaagtcacat Alignment from Spaln_aa2Genome CAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT caccagggactaaacaaatggctcaagtctttcttttcttctttttccagGGATGGCAATGAATTTGAGTCTGAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTCAACCCAAACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaggttacttgtgtaccaaaagacagcagggcgtagcttaaagtcacat Alignment from Spaln_nt2Genome TCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGAT-CAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT caccagggactaaacaaatggctcaagtctttcttttcttctttttccagGGATGGCAATGAATTTGAGTCT------GAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGG---CAACAATGTAATTCAACCCAA-ACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaggttacttgtgtaccaaaagacagcagggcgtagcttaaagtcacat Alignment from Pairagon GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAA---------AGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT caccagggactaaacaaatggctcaagtctttcttttcttctttttccagGG------------------------ATGGCAATGAATTTGAGTCT------GAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGG---CAACAATGT---------AATTCAACCCAAACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaggttacttgtgtaccaaaagacagcagggcgtagcttaaagtcacat Alignment from Exonerate_protein2genome CAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT caccagggactaaacaaatggctcaagtctttcttttcttctttttccagGGATGGCAATGAATTTGAGTCTGAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTCAACCCAAACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaggttacttgtgtaccaaaagacagcagggcgtagcttaaagtcacat Alignment from Exonerate_coding2genome CAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT caccagggactaaacaaatggctcaagtctttcttttcttctttttccagGGATGGCAATGAATTTGAGTCTGAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTCAACCCAAACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaggttacttgtgtaccaaaagacagcagggcgtagcttaaagtcacat Alignment from GeneWise -------AATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGTG caccagggactaaacaaatggctcaagtctttcttttcttctttttccagGGATGGCAATGAATTTGAGTCTGAAGTT------GGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTCAACCCAAACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTGtaggttacttgtgtaccaaaagacagcagggcgtagcttaaagtcacat #### Pnliprp1_ID12769_6 --> 2 - 1 Original Alignment gaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGAT-GCAGCTCCCTTGATCCCATTCTTGg aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccaggaCTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATCGCAGCTG-CTTGGTCCCATCCTTGggtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from CESAR gaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGg aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccaggaCTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATCGCAGCTGCTTGGTCCCATCCTTGggtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Spaln_aa2Genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATCGCAGCTGCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Spaln_nt2Genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGAT-GCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATCGCAGCT-GCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Pairagon GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGAT-GCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATCGCAGCT-GCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Exonerate_protein2genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATCGCAGCTGCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Exonerate_coding2genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATCGCAGCTGCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from GeneWise GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATCGCAGCTGCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc #### Pola2_ID1323_17 --> 1 - 0 Original Alignment tTACTACCCACTTTATCCA-CCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggaggggtgacggtatggtcaggagatcaagttcttccttgcttttgcagcTACTATCCACTTTATCCACCCCCATG-GGACATGGCCATAGACTATAAGAATTTTTACACCTATGCTCAATTGCCAGTGTTACCTGGTGTGTTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgagagttggattgctttctcctttgggtcttctgatatgccatctcac Alignment from CESAR tTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggaggggtgacggtatggtcaggagatcaagttcttccttgcttttgcagcTACTATCCACTTTATCCACCCCCATGGGACATGGCCATAGACTATAAGAATTTTTACACCTATGCTCAATTGCCAGTGTTACCTGGTGTGTTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgagagttggattgctttctcctttgggtcttctgatatgccatctcac Alignment from Spaln_aa2Genome TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggaggggtgacggtatggtcaggagatcaagttcttccttgcttttgcagCTACTATCCACTTTATCCACCCCCATGGGACATGGCCATAGACTATAAGAATTTTTACACCTATGCTCAATTGCCAGTGTTACCTGGTGTGTTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgagagttggattgctttctcctttgggtcttctgatatgccatctcac Alignment from Spaln_nt2Genome TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggaggggtgacggtatggtcaggagatcaagttcttccttgcttttgcagCTACTATCCACTTTATCCACCCCCATGGGACATGGCCATAGACTATAAGAATTTTTACACCTATGCTCAATTGCCAGTGTTACCTGGTGTGTTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgagagttggattgctttctcctttgggtcttctgatatgccatctcac Alignment from Pairagon TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggaggggtgacggtatggtcaggagatcaagttcttccttgcttttgcagCTACTATCCACTTTATCCACCCCCATGGGACATGGCCATAGACTATAAGAATTTTTACACCTATGCTCAATTGCCAGTGTTACCTGGTGTGTTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgagagttggattgctttctcctttgggtcttctgatatgccatctcac Alignment from Exonerate_protein2genome TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggaggggtgacggtatggtcaggagatcaagttcttccttgcttttgcagCTACTATCCACTTTATCCACCCCCATGGGACATGGCCATAGACTATAAGAATTTTTACACCTATGCTCAATTGCCAGTGTTACCTGGTGTGTTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgagagttggattgctttctcctttgggtcttctgatatgccatctcac Alignment from Exonerate_coding2genome TTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggaggggtgacggtatggtcaggagatcaagttcttccttgcttttgcagctactatccacTTTATCCACCCCCATGGGACATGGCCATAGACTATAAGAATTTTTACACCTATGCTCAATTGCCAGTGTTACCTGGTGTGTTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgagagttggattgctttctcctttgggtcttctgatatgccatctcac Alignment from GeneWise TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggaggggtgacggtatggtcaggagatcaagttcttccttgcttttgcagCTACTATCCACTTTATCCACCCCCATGGGACATGGCCATAGACTATAAGAATTTTTACACCTATGCTCAATTGCCAGTGTTACCTGGTGTGTTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtgagagttggattgctttctcctttgggtcttctgatatgccatctcac #### Pola2_ID1329_12 --> 0 - 0 Original Alignment TTCGGACCTTTC-CTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaatgtagtagttcagcgtttttgttctctaaaacatatagTTTGGACCACTGCCTTG-TGCTGAACAGGAACAGGTAGAGgtacgtcccaggggatagccccagcactatacctatgtccatagttattc Alignment from CESAR TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaatgtagtagttcagcgtttttgttctctaaaacatatagTTTGGACCACTGCCTTGTGCTGAACAGGAACAGGTAGAGgtacgtcccaggggatagccccagcactatacctatgtccatagttattc Alignment from Spaln_aa2Genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaatgtagtagttcagcgtttttgttctctaaaacatatagTTTGGACCACTGCCTTGTGCTGAACAGGAACAGGTAGAGgtacgtcccaggggatagccccagcactatacctatgtccatagttattc Alignment from Spaln_nt2Genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaatgtagtagttcagcgtttttgttctctaaaacatatagTTTGGACCACTGCCTTGTGCTGAACAGGAACAGGTAGAGgtacgtcccaggggatagccccagcactatacctatgtccatagttattc Alignment from Pairagon TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaatgtagtagttcagcgtttttgttctctaaaacatatagTTTGGACCACTGCCTTGTGCTGAACAGGAACAGGTAGAGgtacgtcccaggggatagccccagcactatacctatgtccatagttattc Alignment from Exonerate_protein2genome ggtcctatgcaatgtagtagttcagcgtttttgttctctaaaacatatagtttggaccactgccttgtgctgaacaggaacaggtagaggtacgtcccaggggatagccccagcactatacctatgtccatagttattc Alignment from Exonerate_coding2genome ggtcctatgcaatgtagtagttcagcgtttttgttctctaaaacatatagtttggaccactgccttgtgctgaacaggaacaggtagaggtacgtcccaggggatagccccagcactatacctatgtccatagttattc Alignment from GeneWise ggtcctatgcaatgtagtagttcagcgtttttgttctctaaaacatatagtttggaccactgccttgtgctgaacaggaacaggtagaggtacgtcccaggggatagccccagcactatacctatgtccatagttattc #### Pola2_ID1332_9 --> 0 - 0 Original Alignment GTTGTAATTATGGAA-GGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaagtcgcccctgtcctggctactcctgctttttttaaatttaagGTTGTGATTATGGAACGGATTCA-CACTACTGGTAAAAGACTTACTGCCACCAAACTCTATGAGgtaactagtgagccaaccttcctctactccaaaatgagtcaggcagtcac Alignment from CESAR GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaagtcgcccctgtcctggctactcctgctttttttaaatttaagGTTGTGATTATGGAACGGATTCACACTACTGGTAAAAGACTTACTGCCACCAAACTCTATGAGgtaactagtgagccaaccttcctctactccaaaatgagtcaggcagtcac Alignment from Spaln_aa2Genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaagtcgcccctgtcctggctactcctgctttttttaaatttaagGTTGTGATTATGGAACGGATTCACACTACTGGTAAAAGACTTACTGCCACCAAACTCTATGAGgtaactagtgagccaaccttcctctactccaaaatgagtcaggcagtcac Alignment from Spaln_nt2Genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaagtcgcccctgtcctggctactcctgctttttttaaatttaagGTTGTGATTATGGAACGGATTCACACTACTGGTAAAAGACTTACTGCCACCAAACTCTATGAGgtaactagtgagccaaccttcctctactccaaaatgagtcaggcagtcac Alignment from Pairagon GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaagtcgcccctgtcctggctactcctgctttttttaaatttaagGTTGTGATTATGGAACGGATTCACACTACTGGTAAAAGACTTACTGCCACCAAACTCTATGAGgtaactagtgagccaaccttcctctactccaaaatgagtcaggcagtcac Alignment from Exonerate_protein2genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaagtcgcccctgtcctggctactcctgctttttttaaatttaagGTTGTGATTATGGAACGGATTCACACTACTGGTAAAAGACTTACTGCCACCAAACTCTATGAGgtaactagtgagccaaccttcctctactccaaaatgagtcaggcagtcac Alignment from Exonerate_coding2genome GGTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGGGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAGCT atcctcaagtcgcccctgtcctggctactcctgctttttttaaatttaaGGTTGTGATTATGGAACGGATTCACACTACTGGTAAAAGACTTACTGCCACCAAACTCTATGAGGTAACTAGTGAGCCAACCTTCCTCTACTCCAAAATGAGTCAGGCAgtcac Alignment from GeneWise GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaagtcgcccctgtcctggctactcctgctttttttaaatttaagGTTGTGATTATGGAACGGATTCACACTACTGGTAAAAGACTTACTGCCACCAAACTCTATGAGgtaactagtgagccaaccttcctctactccaaaatgagtcaggcagtcac #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCC-CCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag gggtacactaccaccccctgattgtctcccacatcctttgtctcccacagggATCTCAAGATTGTTGCAGTGC---AGCCGTGCAGAGCAGATGGGCTTGACGCCCCCCTCTAG-GGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCTCACTATTGGTGTacgtacgcatgtacagcctgcctatctggaagctcatctggagtgtgttagc Alignment from CESAR gtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag gggtacactaccaccccctgattgtctcccacatcctttgtctcccacagggATCTCAAGATTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCCTCTAGGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCTCACTATTGGTGTacgtacgcatgtacagcctgcctatctggaagctcatctggagtgtgttagc Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gggtacactaccaccccctgattgtctcccacatcctttgtctcccacagGGATCTCAAGATTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCCTCTAGGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCTCACTATTGGTGTACgtacgcatgtacagcctgcctatctggaagctcatctggagtgtgttagc Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gggtacactaccaccccctgattgtctcccacatcctttgtctcccacagGGATCTCAAGATTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCCTCTAGGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCTCACTATTGGTGTACgtacgcatgtacagcctgcctatctggaagctcatctggagtgtgttagc Alignment from Pairagon GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCAC------- gggtacactaccaccccctgattgtctcccacatcctttgtctcccacagGGATCTCAAGATTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCCTCTAGGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCTCACTATTGGTgtacgtacgcatgtacagcctgcctatctggaagctcatctggagtgtgttagc Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gggtacactaccaccccctgattgtctcccacatcctttgtctcccacagGGATCTCAAGATTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCCTCTAGGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCTCACTATTGGTGTACgtacgcatgtacagcctgcctatctggaagctcatctggagtgtgttagc Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC gggtacactaccaccccctgattgtctcccacatcctttgtctcccacagGGATCTCAAGATTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCCTCTAGGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCTCACTATTGGTGTACGtacgcatgtacagcctgcctatctggaagctcatctggagtgtgttagc Alignment from GeneWise GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGCCTGTGGCATCTCTACCCACTC gggtacactaccaccccctgattgtctcccacatcctttgtctcccacagGGATCTCAAGATTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCCTCTAGGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCTCACTATTGGTGTACGTACGCATGTACAGCCTGCCTAtctggaagctcatctggagtgtgttagc #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCA-CGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgaccctggtcaagccagttaaagttcctccgttctccctcctttagATTTCCCTGGAGCGCGAAATCCTCCTGCACCCACCGATACTTCG-TCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtatgcctcttctttacaggagcaagaccttttgaatgcattggcagcaa Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgaccctggtcaagccagttaaagttcctccgttctccctcctttagATTTCCCTGGAGCGCGAAATCCTCCTGCACCCACCGATACTTCGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtatgcctcttctttacaggagcaagaccttttgaatgcattggcagcaa Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgaccctggtcaagccagttaaagttcctccgttctccctcctttagATTTCCCTGGAGCGCGAAATCCTCCTGCACCCACCGATACTTCGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgcctcttctttacaggagcaagaccttttgaatgcattggcagcaa Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgaccctggtcaagccagttaaagttcctccgttctccctcctttagATTTCCCTGGAGCGCGAAATCCTCCTGCACCCACCGATACTTCGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgcctcttctttacaggagcaagaccttttgaatgcattggcagcaa Alignment from Pairagon ATTTCCCTGGAGCACGAGATCCTCCTGCACCCAC-GATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgaccctggtcaagccagttaaagttcctccgttctccctcctttagATTTCCCTGGAGCGCGAAATCCTCCTGCACCCACCGATACTTCG-TCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgcctcttctttacaggagcaagaccttttgaatgcattggcagcaa Alignment from Exonerate_protein2genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgaccctggtcaagccagttaaagttcctccgttctccctcctttagATTTCCCTGGAGCGCGAAATCCTCCTGCACCCACCGATACTTCGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgcctcttctttacaggagcaagaccttttgaatgcattggcagcaa Alignment from Exonerate_coding2genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgaccctggtcaagccagttaaagttcctccgttctccctcctttagATTTCCCTGGAGCGCGAAATCCTCCTGCACCCACCGATACTTCGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgcctcttctttacaggagcaagaccttttgaatgcattggcagcaa Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgaccctggtcaagccagttaaagttcctccgttctccctcctttag---------ATTTCCCTGGAGCGCGAAATCCTCCTGCACCCACCGATACTTCGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgcctcttctttacaggagcaagaccttttgaatgcattggcagcaa #### Ppp1ca_ID412_6 --> 0 - 0 Original Alignment GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAG---AGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGT-GCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG atgatctaaggtcgaacttaataatataagctacttccctcccctgccagGTTATT---GGTGGATATGATTTCTTTGCAAAAAAGAAAAAACTAGTAACATTC---TCAGCTCCTAATTACTGTGGTGAATTTGAAAACGCTGGTCGCCATGACCA-TGTAGACAAGACCCTCATATGCTGCAGGGCTTTCCCTgtgagtagaaggaatagccagtagggaataatatatctttggatcttagg Alignment from CESAR GTTGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGT------TCCTTCCAG atgatctaaggtcgaacttaataatataagctacttccctcccctgccagGTTATT---GGTGGATATGATTTCTTTGCAAAAAAGAAAAAACTAGTAACA---TTCTCAGCTCCTAATTACTGTGGTGAATTTGAAAACGCTGGTCGCCATGACCATGTAGACAAGACCCTCATATGCTGCAGGGCTTTCCCTgtgagtagaaggaatagccagtagggaataatatatctttggatcttagg Alignment from Spaln_aa2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGT------TCCTTCCAG atgatctaaggtcgaacttaataatataagctacttccctcccctgccagGTTATTGGTGGATATGATTTC---TTTGCAAAAAAGAAAAAACTAGTAACATTCTCAGCTCCTAATTACTGTGGTGAATTTGAAAACGCTGGTCGCCATGACCATGTAGACAAGACCCTCATATGCTGCAGGGCTTTCCCTgtgagtagaaggaatagccagtagggaataatatatctttggatcttagg Alignment from Spaln_nt2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAA---GAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGT-GCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG atgatctaaggtcgaacttaataatataagctacttccctcccctgccagGTTAT---TGGTGGATATGATTTCTTTGCAAAAAAGAAAAAACTAGTAACA---TTCTCAGCTCCTAATTACTGTGGTGAATTTGAAAACGCTGGTCGCCATGACCA-TGTAGACAAGACCCTCATATGCTGCAGGGCTTTCCCTgtgagtagaaggaatagccagtagggaataatatatctttggatcttagg Alignment from Pairagon --------------------------------------------------------------TATGAGTTCTTTGC--------------------CAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGT-GCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC-------------------------------------------------------------- ATGATCTAAGGTCGAACTTAATAATATAAGCTACTTCCCTCCCCTGCCAGGTTATTGGTGGATATGATTTCTTTGCAAAAAAGAAAAAACTAGTAACA--------------------TTCTCAGCTCCTAATTACTGTGGTGAATTTGAAAACGCTGGTCGCCATGACCA-TGTAGACAAGACCCTCATATGCTGCAGGGCTTTCCCTGTGAGTAGAAGGAATAGCCAGTAGGGAATAATATATCTTTGGATCTTAGG Alignment from Exonerate_protein2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGT------TCCTTCCAG atgatctaaggtcgaacttaataatataagctacttccctcccctgccagGTTATT---GGTGGATATGATTTCTTTGCAAAAAAGAAAAAACTAGTAACATTCTCAGCTCCTAATTACTGTGGTGAATTTGAAAACGCTGGTCGCCATGACCATGTAGACAAGACCCTCATATGCTGCAGGGCTTTCCCTgtgagtagaaggaatagccagtagggaataatatatctttggatcttagg Alignment from Exonerate_coding2genome atgatctaaggtcgaacttaataatataagctacttccctcccctgccaggttattggtggatatgatttctttgcaaaaaagaaaaaactagtaacattctcagctcctaattactgtggtgaatttgaaaacgctggtcgccatgaccatgtagacaagaccctcatatgctgcagggctttccctgtgagtagaaggaatagccagtagggaataatatatctttggatcttagg Alignment from GeneWise GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGT------TCCTTCCAG atgatctaaggtcgaacttaataatataagctacttccctcccctgccagGTTATT---GGTGGATATGATTTCTTTGCAAAAAAGAAAAAACTAGTAACATTCTCAGCTCCTAATTACTGTGGTGAATTTGAAAACGCTGGTCGCCATGACCATGTAGACAAGACCCTCATATGCTGCAGGGCTTTCCCTgtgagtagaaggaatagccagtagggaataatatatctttggatcttagg #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG atgagaaaccctgagtcaaagaaaccataactttccgtttctccccccagCAACTGTTAGTTCGACTGCT-TAAACCCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctttagttctca Alignment from CESAR GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagtcaaagaaaccataactttccgtttctccccccagCAACTGTTAGTTCGACTGCTTAAACCCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctttagttcttt Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagtcaaagaaaccataactttccgtttctccccccagCAACTGTTAGTTCGACTGCTTAAACCCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctttagttctca Alignment from Spaln_nt2Genome GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG atgagaaaccctgagtcaaagaaaccataactttccgtttctccccccagCAACTGTTAGTTCGACTGCT-TAAACCCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctttagttctca Alignment from Pairagon GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG atgagaaaccctgagtcaaagaaaccataactttccgtttctccccccagCAACTGTTAGTTCGACTGCT-TAAACCCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctttagttctca Alignment from Exonerate_protein2genome atgagaaaccctgagtcaaagaaaccataactttccgtttctccccccagcaactgttagttcgactgcttaaacccactgaggtaagttactacccttcccccaaggtatgaagctgttcctttagttctca Alignment from Exonerate_coding2genome atgagaaaccctgagtcaaagaaaccataactttccgtttctccccccagcaactgttagttcgactgcttaaacccactgaggtaagttactacccttcccccaaggtatgaagctgttcctttagttctca Alignment from GeneWise TGTTAG atgagaaaccctgagtcaaagaaaccataactttccgtttctccccccagcaactgttagttcgactgcttaaacccactgaggtaagttactacccttcccccaaggtatgaagctgttcctttagTTCTCA #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT-------CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCCGGGACACAG-ATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA------TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCCGGGACACAGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA------TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCCGGGACACAGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATC-------GGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCCGGGACAC-AGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT-------CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCCGGGACAC-AGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA------TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCCGGGACACAGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA------TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCCGGGACACAGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA------TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCCGGGACACAGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt #### Ppp1r32_ID2844_7 --> 0 - 0 Original Alignment GTCCTCCATCCA-GGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctacaacacatgttcaccattaaatgttctcccttttttctttccccagGTTCTGCATCCACGGTCGAAGTA-CAGCAAGTCATACTACCTCCCTCTAACACACCCTCAGgtgagtattgcagtctgtcggaacaatatgtatgcaccaggtgttgaggt Alignment from CESAR GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctacaacacatgttcaccattaaatgttctcccttttttctttccccagGTTCTGCATCCACGGTCGAAGTACAGCAAGTCATACTACCTCCCTCTAACACACCCTCAGgtgagtattgcagtctgtcggaacaatatgtatgcaccaggtgttgaggt Alignment from Spaln_aa2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctacaacacatgttcaccattaaatgttctcccttttttctttccccagGTTCTGCATCCACGGTCGAAGTACAGCAAGTCATACTACCTCCCTCTAACACACCCTCAGgtgagtattgcagtctgtcggaacaatatgtatgcaccaggtgttgaggt Alignment from Spaln_nt2Genome GTCCTCCATCCA-GGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctacaacacatgttcaccattaaatgttctcccttttttctttccccagGTTCTGCATCCACGGTCGAAGTA-CAGCAAGTCATACTACCTCCCTCTAACACACCCTCAGgtgagtattgcagtctgtcggaacaatatgtatgcaccaggtgttgaggt Alignment from Pairagon GTCCTCCATCCA-GGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctacaacacatgttcaccattaaatgttctcccttttttctttccccagGTTCTGCATCCACGGTCGAAGTA-CAGCAAGTCATACTACCTCCCTCTAACACACCCTCAGgtgagtattgcagtctgtcggaacaatatgtatgcaccaggtgttgaggt Alignment from Exonerate_protein2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctacaacacatgttcaccattaaatgttctcccttttttctttccccagGTTCTGCATCCACGGTCGAAGTACAGCAAGTCATACTACCTCCCTCTAACACACCCTCAGgtgagtattgcagtctgtcggaacaatatgtatgcaccaggtgttgaggt Alignment from Exonerate_coding2genome gctacaacacatgttcaccattaaatgttctcccttttttctttccccaggttctgcatccacggtcgaagtacagcaagtcatactacctccctctaacacaccctcaggtgagtattgcagtctgtcggaacaatatgtatgcaccaggtgttgaggt Alignment from GeneWise GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gctacaacacatgttcaccattaaatgttctcccttttttctttccccagGTTCTGCATCCACGGTCGAAGTACAGCAAGTCATACTACCTCCCTCTAACACACCCTCAGgtgagtattgcagtctgtcggaacaatatgtatgcaccaggtgttgaggt #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTA-TTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag tgattgacactccgctacaacttgcaccctctgatctctctttttcgtagGTGACTGACCTCCTTATTAG-TGACTCACTGCTCTCTTTGTGTGGGAACCATTGGCTGAAAaggtaagggtgatctccagtctctccatacttactgattgtaggataactcc Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag tgattgacactccgctacaacttgcaccctctgatctctctttttcgtagGTGACTGACCTCCTTATTAGTGACTCACTGCTCTCTTTGTGTGGGAACCATTGGCTGAAAaggtaagggtgatctccagtctctccatacttactgattgtaggataactcc Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tgattgacactccgctacaacttgcaccctctgatctctctttttcgtagGTGACTGACCTCCTTATTAGTGACTCACTGCTCTCTTTGTGTGGGAACCATTGGCTGAAAAGgtaagggtgatctccagtctctccatacttactgattgtaggataactcc Alignment from Spaln_nt2Genome GCGACAGACTTA-TTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tgattgacactccgctacaacttgcaccctctgatctctctttttcgtagGTGACTGACCTCCTTATTAG-TGACTCACTGCTCTCTTTGTGTGGGAACCATTGGCTGAAAAGgtaagggtgatctccagtctctccatacttactgattgtaggataactcc Alignment from Pairagon GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tgattgacactccgctacaacttgcaccctctgatctctctttttcgtaggtgactgacctccttattag--------------------TGACTCACTGCTCTCTTTGTGTGGGAACCATTGGCTGAAAAGgtaagggtgatctccagtctctccatacttactgattgtaggataactcc Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tgattgacactccgctacaacttgcaccctctgatctctctttttcgtagGTGACTGACCTCCTTATTAGTGACTCACTGCTCTCTTTGTGTGGGAACCATTGGCTGAAAAGgtaagggtgatctccagtctctccatacttactgattgtaggataactcc Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGA tgattgacactccgctacaacttgcaccctctgatctctctttttcgtaggtgactgacctccttattagtgactcactgctctctttgtgtgggaaccattggctgaaaaggtaagggtgatctccagtctctccatacttACTGATTGTAGGATAACTCC Alignment from GeneWise GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGGCGACAGACTT tgattgacactccgctacaacttgcaccctctgatctctctttttcgtaggtgactgacctccttattagtgactcactgctctctttgtgtgggaaccattggctgaaaagGTAAGGGTGATCTCC------------AGTCTCTCCATACTTACTGATTG #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATT-GAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG agtagccccagggcatgcactgatagtgatgtctccttgtctctgcacagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCTCGGAAAGCCAAAGGTGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTCGAGGAGTGGG-ACGAGCCCATGAAGCAGAAGGTAAAgtgagagatccttctgctagttgtgatagcctaggaccagattgcgattt Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG agtagccccagggcatgcactgatagtgatgtctccttgtctctgcacagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCTCGGAAAGCCAAAGGTGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTCGAGGAGTGGGACGAGCCCATGAAGCAGAAGGTAAAgtgagagatccttctgctagttgtgatagcctaggaccagattgcgattt Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG agtagccccagggcatgcactgatagtgatgtctccttgtctctgcacagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCTCGGAAAGCCAAAGGTGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTCGAGGAGTGGGACGAGCCCATGAAGCAGAAGGTAAAgtgagagatccttctgctagttgtgatagcctaggaccagattgcgattt Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATT-GAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG agtagccccagggcatgcactgatagtgatgtctccttgtctctgcacagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCTCGGAAAGCCAAAGGTGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTCGAGGAGT-GGGACGAGCCCATGAAGCAGAAGGTAAAgtgagagatccttctgctagttgtgatagcctaggaccagattgcgattt Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATT-GAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG agtagccccagggcatgcactgatagtgatgtctccttgtctctgcacagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCTCGGAAAGCCAAAGGTGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTCGAGGAGTGGGA-CGAGCCCATGAAGCAGAAGGTAAAgtgagagatccttctgctagttgtgatagcctaggaccagattgcgattt Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG agtagccccagggcatgcactgatagtgatgtctccttgtctctgcacagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCTCGGAAAGCCAAAGGTGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTCGAGGAGTGGGACGAGCCCATGAAGCAGAAGGTAAAgtgagagatccttctgctagttgtgatagcctaggaccagattgcgattt Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG agtagccccagggcatgcactgatagtgatgtctccttgtctctgcacagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCTCGGAAAGCCAAAGGTGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTCGAGGAGTGGGACGAGCCCATGAAGCAGAAGGTAAAgtgagagatccttctgctagttgtgatagcctaggaccagattgcgattt Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG agtagccccagggcatgcactgatagtgatgtctccttgtctctgcacagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCTCGGAAAGCCAAAGGTGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTCGAGGAGTGGGACGAGCCCATGAAGCAGAAGGTAAAgtgagagatccttctgctagttgtgatagcctaggaccagattgcgattt #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagttGCACACCCAATTCGACCCAAGCCTCCCCTCTGCGA-CAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaactcatgcttttctttcattcctagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagttGCACACCCAATTCGACCCAAGCCTCCCCTCTGCGACAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCCTCTGCGACAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaactcatgcttttctttcattcctagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCCTCTGCGACAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaactcatgcttttctttcattcctagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCCTCTGCGACAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaactcatgcttttctttcattcctagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCCTCTGCGACAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaactcatgcttttctttcattcctagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCCTCTGCGACAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaactcatgcttttctttcattcctagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCCTCTGCGACAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaactcatgcttttctttcattcctagGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTG-TCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg ctCTGGCTA CCTTACAAGATGAGTGGgtgagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGCTGCCATG-TCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgagtctcattccactgttctggccctctttcatgagcagccTTGGCCA Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg ctCTGGCTA CCTTACAAGATGAGTGGgtaagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGCTGCCATGTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgagtctcattccactgtcttgttaacttgctgtttctagccTTGGCCA Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtgagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGCTGCCATGTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttctggccctctttcatgagcagCCTTGGCCA Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtgagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGCTGCCATGTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttctggccctctttcatgagcagCCTTGGCCA Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTG-TCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtgagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGCTGCCATG-TCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttctggccctctttcatgagcagCCTTGGCCA Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtgagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGCTGCCATGTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttctggccctctttcatgagcagCCTTGGCCA Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtgagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGCTGCCATGTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttctggccctctttcatgagcagCCTTGGCCA Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGGTGAGTAAACTTCGATGTTCCCTCTCCCCACAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGCTGCCATGTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttctggccctctttcatgagcagCCTTGGCCA #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATGGATTTGGGTGAG-CTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG ggtttttgttgtgggtgtctgtcatgtgatgaaatattctgtcccctcagGGGGCTGGAGATGCAATGGATTTGGGTGAGCCTTGCTGGGG-AATGACCCCAGAGATTATCCAGAAAgttatttgagatccatccacagcaagctgtgacctatcacattaaccaca Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG ggtttttgttgtgggtgtctgtcatgtgatgaaatattctgtcccctcagGGGGCTGGAGATGCAATGGATTTGGGTGAGCCTTGCTGGGGAATGACCCCAGAGATTATCCAGAAAgttatttgagatccatccacagcaagctgtgacctatcacattaaccaca Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG ggtttttgttgtgggtgtctgtcatgtgatgaaatattctgtcccctcagGGGGCTGGAGATGCAATGGATTTGGGTGAGCCTTGCTGGGGAATGACCCCAGAGATTATCCAGAAAgttatttgagatccatccacagcaagctgtgacctatcacattaaccaca Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGC--TGGTGGG-AATGACCCCTGAGATTATCCAGAAG ggtttttgttgtgggtgtctgtcatgtgatgaaatattctgtcccctcagGGGGCTGGAGATGCAATGGATTTGGGTGAGCCTTGCTGGGGAATGACCCCAGAGATTATCCAGAAAgttatttgagatccatccacagcaagctgtgacctatcacattaaccaca Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGA-----GCTGGTGGGAATGACCCCTGAGATTATCCAGAAG ggtttttgttgtgggtgtctgtcatgtgatgaaatattctgtcccctcagGGGGCTGGAGATGCAATGGATTTGGGTGAGCCTTGCTG--GGGAATGACCCCAGAGATTATCCAGAAAgttatttgagatccatccacagcaagctgtgacctatcacattaaccaca Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAG---CTGGTGGGAATGACCCCTGAGATTATCCAGAAG ggtttttgttgtgggtgtctgtcatgtgatgaaatattctgtcccctcagGGGGCTGGAGATGCAATGGATTTGGGTGAGCCTTGCTGGGGAATGACCCCAGAGATTATCCAGAAAgttatttgagatccatccacagcaagctgtgacctatcacattaaccaca Alignment from Exonerate_coding2genome ggtttttgttgtgggtgtctgtcatgtgatgaaatattctgtcccctcagggggctggagatgcaatggatttgggtgagccttgctggggaatgaccccagagattatccagaaagttatttgagatccatccacagcaagctgtgacctatcacattaaccaca Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAGCTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG ggtttttgttgtgggtgtctgtcatgtgatgaaatattctgtcccctcagGGGGCTGGAGATGCAATGGATTTGGGTGAGCCTTGCTGGGGAATGACCCCAGAGATTATCCAG------------------------------------------AAAgttatttgagatccatccacagcaagctgtgacctatcacattaaccaca #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTC-AATGACACCCACCCCTCTTTG---GCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG gatggagtggtcacaaagattcccccgcctcccccctggctttcccatagGTGGTGATACAACTTCAATG-CACACGTCATTCTTTGGCTACCATTCCTGAGCTGATGAGGATCCCAGTATACCTTGAACAACTAGACTGGGATAAAgtaaggcttttcatcaagcattgacaggttcttctcctgtgggtggggag Alignment from CESAR GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG gatggagtggtcacaaagattcccccgcctcccccctggctttcccatagGTGGTGATACAACTTCAATGCACACGTCATTCTTTGGCTACCATTCCTGAGCTGATGAGGATCCCAGTATACCTTGAACAACTAGACTGGGATAAAgtaaggcttttcatcaagcattgacaggttcttctcctgtgggtggggag Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG gatggagtggtcacaaagattcccccgcctcccccctggctttcccatagGTGGTGATACAACTTCAATGCACACGTCATTCTTTGGCTACCATTCCTGAGCTGATGAGGATCCCAGTATACCTTGAACAACTAGACTGGGATAAAgtaaggcttttcatcaagcattgacaggttcttctcctgtgggtggggag Alignment from Spaln_nt2Genome GTGGCCATCCAGCT-CAATGACACCCACCCCTCTTTGGC---CATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG gatggagtggtcacaaagattcccccgcctcccccctggctttcccatagGTGGTGATACAACTTCAATG-CACACGTCATTCTTTGGCTACCATTCCTGAGCTGATGAGGATCCCAGTATACCTTGAACAACTAGACTGGGATAAAgtaaggcttttcatcaagcattgacaggttcttctcctgtgggtggggag Alignment from Pairagon GTG----------------------GCCATCCAGCTCAATGACACCCACCCCTCTTTGG---CCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG gatggagtggtcacaaagattcccccgcctcccccctggctttcccatagGTGGTGATACAACTTCAATGCACACGTCAT----------------------TCTTTGGCTACCATTCCTGAGCTGATGAGGATCCCAGTATACCTTGAACAACTAGACTGGGATAAAgtaaggcttttcatcaagcattgacaggttcttctcctgtgggtggggag Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG gatggagtggtcacaaagattcccccgcctcccccctggctttcccatagGTGGTGATACAACTTCAATGCACACGTCATTCTTTGGCTACCATTCCTGAGCTGATGAGGATCCCAGTATACCTTGAACAACTAGACTGGGATAAAgtaaggcttttcatcaagcattgacaggttcttctcctgtgggtggggag Alignment from Exonerate_coding2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG gatggagtggtcacaaagattcccccgcctcccccctggctttcccatagGTGGTGATACAACTTCAATGCACACGTCATTCTTTGGCTACCATTCCTGAGCTGATGAGGATCCCAGTATACCTTGAACAACTAGACTGGGATAAAgtaaggcttttcatcaagcattgacaggttcttctcctgtgggtggggag Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG gatggagtggtcacaaagattcccccgcctcccccctggctttcccatagGTGGTGATACAACTTCAATGCACACGTCATTCTTTGGCTACCATTCCTGAGCTGATGAGGATCCCAGTATACCTTGAACAACTAGACTGGGATAAAgtaaggcttttcatcaagcattgacaggttcttctcctgtgggtggggag #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATC-ATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagatgggtggagggtgactaatgctgttcaccgttgtcttctacagGCCTGGGATGTTACAGTAAAGACCTGCGTCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATACATTTACGAGA-TAATCAGTGTTTCCTGAATgtaagtacagaatgatgaggaggagcctgaggagcttgagtatgatgtat Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATC-ATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagatgggtggagggtgactaatgctgttcaccgttgtcttctacagGCCTGGGATGTTACAGTAAAGACCTGCGTCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATACATTTACGAGA-TAATCAGTGTTTCCTGAATgtaagtacagaatgatgaggaggagcctgaggagcttgagtatgatgtat Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagatgggtggagggtgactaatgctgttcaccgttgtcttctacagGCCTGGGATGTTACAGTAAAGACCTGCGTCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATACATTTACGAGATAATCAGTGTTTCCTGAATgtaagtacagaatgatgaggaggagcctgaggagcttgagtatgatgtat Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGAT-CATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagatgggtggagggtgactaatgctgttcaccgttgtcttctacagGCCTGGGATGTTACAGTAAAGACCTGCGTCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATACATTTACGAGAT-AATCAGTGTTTCCTGAATgtaagtacagaatgatgaggaggagcctgaggagcttgagtatgatgtat Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGAT-CATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagatgggtggagggtgactaatgctgttcaccgttgtcttctacagGCCTGGGATGTTACAGTAAAGACCTGCGTCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATACATTTACGAGAT-AATCAGTGTTTCCTGAATgtaagtacagaatgatgaggaggagcctgaggagcttgagtatgatgtat Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagatgggtggagggtgactaatgctgttcaccgttgtcttctacagGCCTGGGATGTTACAGTAAAGACCTGCGTCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATACATTTACGAGATAATCAGTGTTTCCTGAATgtaagtacagaatgatgaggaggagcctgaggagcttgagtatgatgtat Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagatgggtggagggtgactaatgctgttcaccgttgtcttctacagGCCTGGGATGTTACAGTAAAGACCTGCGTCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATACATTTACGAGATAATCAGTGTTTCCTGAATgtaagtacagaatgatgaggaggagcctgaggagcttgagtatgatgtat Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagatgggtggagggtgactaatgctgttcaccgttgtcttctacagGCCTGGGATGTTACAGTAAAGACCTGCGTCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATACATTTACGAGATAATCAGTGTTTCCTGAATgtaagtacagaatgatgaggaggagcctgaggagcttgagtatgatgtat #### Pygm_ID1691_15 --> 2 - 0 Original Alignment gcATCAAAAGGGAGCCCAAT-AGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaaggaATAAAAAGGGAGCTCAATCCGGTTCATGG-GCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from CESAR gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaaggaATAAAAAGGGAGCTCAATCCGGTTCATGGGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Spaln_aa2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCCGGTTCATGGGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Spaln_nt2Genome GCATCAAAAGGGAGCCCAATA-GGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCCGGTTCATGG-GCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Pairagon GCATCAAAAGGGAGCCCAAT-AGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCCGGTTCATGG-GCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Exonerate_protein2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCCGGTTCATGGGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Exonerate_coding2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCCGGTTCATGGGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from GeneWise GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCCGGTTCATGGGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa #### Pygm_ID1692_16 --> 0 - 1 Original Alignment GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCG-GTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAg agaattaaacccaaagaagtgtacacatgatttttatataccattttcagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATCAAGATTATCACTGCAATAGGAGATGTGGTTAATCATGACCCTACACGTAGGGG-TCGTCTCCAAGTGCTCTTTCTGGAGAACTATCAGGTCACACTTGCTGAGAGGggtataaggcaccactgccgatggactactgctgctggctaagaagctctg Alignment from CESAR GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAg agaattaaacccaaagaagtgtacacatgatttttatataccattttcagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATCAAGATTATCACTGCAATAGGAGATGTGGTTAATCATGACCCTACACGTAGGGGTCGTCTCCAAGTGCTCTTTCTGGAGAACTATCAGGTCACACTTGCTGAGAGGggtataaggcaccactgccgatggactactgctgctggctaagaagctctg Alignment from Spaln_aa2Genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaacccaaagaagtgtacacatgatttttatataccattttcagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATCAAGATTATCACTGCAATAGGAGATGTGGTTAATCATGACCCTACACGTAGGGGTCGTCTCCAAGTGCTCTTTCTGGAGAACTATCAGGTCACACTTGCTGAGAGGGgtataaggcaccactgccgatggactactgctgctggctaagaagctctg Alignment from Spaln_nt2Genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaacccaaagaagtgtacacatgatttttatataccattttcagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATCAAGATTATCACTGCAATAGGAGATGTGGTTAATCATGACCCTACACGTAGGGGTCGTCTCCAAGTGCTCTTTCTGGAGAACTATCAGGTCACACTTGCTGAGAGGGgtataaggcaccactgccgatggactactgctgctggctaagaagctctg Alignment from Pairagon GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCT-------GCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaacccaaagaagtgtacacatgatttttatataccattttcagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATCAAGATTATCACTGCAATAGGAGATGTGGTTAATCATGACCCTACACGTAGGGGT-------CGTCTCCAAGTGCTCTTTCTGGAGAACTATCAGGTCACACTTGCTGAGAGGGgtataaggcaccactgccgatggactactgctgctggctaagaagctctg Alignment from Exonerate_protein2genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaacccaaagaagtgtacacatgatttttatataccattttcagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATCAAGATTATCACTGCAATAGGAGATGTGGTTAATCATGACCCTACACGTAGGGGTCGTCTCCAAGTGCTCTTTCTGGAGAACTATCAGGTCACACTTGCTGAGAGGGgtataaggcaccactgccgatggactactgctgctggctaagaagctctg Alignment from Exonerate_coding2genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaacccaaagaagtgtacacatgatttttatataccattttcagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATCAAGATTATCACTGCAATAGGAGATGTGGTTAATCATGACCCTACACGTAGGGGTCGTCTCCAAGTGCTCTTTCTGGAGAACTATCAGGTCACACTTGCTGAGAGGGgtataaggcaccactgccgatggactactgctgctggctaagaagctctg Alignment from GeneWise GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaacccaaagaagtgtacacatgatttttatataccattttcagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATCAAGATTATCACTGCAATAGGAGATGTGGTTAATCATGACCCTACACGTAGGGGTCGTCTCCAAGTGCTCTTTCTGGAGAACTATCAGGTCACACTTGCTGAGAGGGgtataaggcaccactgccgatggactactgctgctggctaagaagctctg #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAG-CAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG gggttaacaactcctggtgcttttacagttttattgtcctttcttcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACCAGGCAACAT-AGAAAAGCAGCTGAAGGAAGCATGGGGCAAGgtaaggtggagcaaaatgatcacaagtgctgtctacccctgtttccaagc Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG gggttaacaactcctggtgcttttacagttttattgtcctttcttcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACCAGGCAACATAGAAAAGCAGCTGAAGGAAGCATGGGGCAAGgtaaggtggagcaaaatgatcacaagtgctgtctacccctgtttccaagc Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG gggttaacaactcctggtgcttttacagttttattgtcctttcttcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACCAGGCAACATAGAAAAGCAGCTGAAGGAAGCATGGGGCAAGgtaaggtggagcaaaatgatcacaagtgctgtctacccctgtttccaagc Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG gggttaacaactcctggtgcttttacagttttattgtcctttcttcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACCAGGCAACATAGAAAAGCAGCTGAAGGAAGCATGGGGCAAGgtaaggtggagcaaaatgatcacaagtgctgtctacccctgtttccaagc Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAG-CAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG gggttaacaactcctggtgcttttacagttttattgtcctttcttcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACCAGGCAACAT-AGAAAAGCAGCTGAAGGAAGCATGGGGCAAGgtaaggtggagcaaaatgatcacaagtgctgtctacccctgtttccaagc Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG gggttaacaactcctggtgcttttacagttttattgtcctttcttcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACCAGGCAACATAGAAAAGCAGCTGAAGGAAGCATGGGGCAAGgtaaggtggagcaaaatgatcacaagtgctgtctacccctgtttccaagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise -----------------------------------------------GAGGAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG GGGTTAACAACTCCTGGTGCTTTTACAGTTTTATTGTCCTTTCTTCACAGGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACCAGGCAACATAGAAAAGCAGCTGAAGGAAGCATGGGGCAAGgtaaggtggagcaaaatgatcacaagtgctgtctacccctgtttccaagc #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGGACTGCT-GTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa gcaatctgcaatcttgtagcttcataagttggtctcttttcttttgccagCTATCAGCTTTAGTTCAAACTGCTCGTAGAAGACA-TACACTCACCATTGAGCCCGTTGCTTCACAGACACTGCCGGCAGTAAAGGTACCTAGTATTGAGTGTAACAACACCaagtgagctcatacatgcctctgaaaggctcaaaatttctagatttagctaa Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa gcaatctgcaatcttgtagcttcataagttggtctcttttcttttgccagCTATCAGCTTTAGTTCAAACTGCTCGTAGAAGACATACACTCACCATTGAGCCCGTTGCTTCACAGACACTGCCGGCAGTAAAGGTACCTAGTATTGAGTGTAACAACACCaagtgagctcatacatgcctctgaaaggctcaaaatttctagatttagctaa Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA gcaatctgcaatcttgtagcttcataagttggtctcttttcttttgccagCTATCAGCTTTAGTTCAAACTGCTCGTAGAAGACATACACTCACCATTGAGCCCGTTGCTTCACAGACACTGCCGGCAGTAAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagctcatacatgcctctgaaaggctcaaaatttctagatttagctaa Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCT-GTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA gcaatctgcaatcttgtagcttcataagttggtctcttttcttttgccagCTATCAGCTTTAGTTCAAACTGCTCGTAGAAGAC-ATACACTCACCATTGAGCCCGTTGCTTCACAGACACTGCCGGCAGTAAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagctcatacatgcctctgaaaggctcaaaatttctagatttagctaa Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCT-GTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA gcaatctgcaatcttgtagcttcataagttggtctcttttcttttgccagCTATCAGCTTTAGTTCAAACTGCTCGTAGAAGAC-ATACACTCACCATTGAGCCCGTTGCTTCACAGACACTGCCGGCAGTAAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagctcatacatgcctctgaaaggctcaaaatttctagatttagctaa Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA gcaatctgcaatcttgtagcttcataagttggtctcttttcttttgccagCTATCAGCTTTAGTTCAAACTGCTCGTAGAAGACATACACTCACCATTGAGCCCGTTGCTTCACAGACACTGCCGGCAGTAAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagctcatacatgcctctgaaaggctcaaaatttctagatttagctaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA gcaatctgcaatcttgtagcttcataagttggtctcttttcttttgccagCTATCAGCTTTAGTTCAAACTGCTCGTAGAAGACATACACTCACCATTGAGCCCGTTGCTTCACAGACACTGCCGGCAGTAAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagctcatacatgcctctgaaaggctcaaaatttctagatttagctaa #### Rasgrp2_ID1703_2 --> 2 - 2 Original Alignment atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTT-CTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt tcctcagcaggcttaaatacaagctccagtgtcctctcactgtcctacagatGATTCAGGAAAGGTGCAAGATTCCCAGCTTGTACATATGTTCCCTAATGATGT-TCCATGGTATATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACttgtaagtttggtgctccataacattggaagattttgagtgtctagtactaa Alignment from CESAR atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt tcctcagcaggcttaaatacaagctccagtgtcctctcactgtcctacagatGATTCAGGAAAGGTGCAAGATTCCCAGCTTGTACATATGTTCCCTAATGATGTTCCATGGTATATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACttgtaagtttggtgctccataacattggaagattttgagtgtctagtactaa Alignment from Spaln_aa2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT tcctcagcaggcttaaatacaagctccagtgtcctctcactgtcctacagATGATTCAGGAAAGGTGCAAGATTCCCAGCTTGTACATATGTTCCCTAATGATGTTCCATGGTATATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtaagtttggtgctccataacattggaagattttgagtgtctagtactaa Alignment from Spaln_nt2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTC-TCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT tcctcagcaggcttaaatacaagctccagtgtcctctcactgtcctacagATGATTCAGGAAAGGTGCAAGATTCCCAGCTTGTACATATGTTCCCTAATGATG-TTCCATGGTATATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtaagtttggtgctccataacattggaagattttgagtgtctagtactaa Alignment from Pairagon ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCC-------------TGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT tcctcagcaggcttaaatacaagctccagtgtcctctcactgtcctacagATGATTCAGGAAAGGTGCAAGATTCCCAGCTTGTACATATGTT-------------CCCTAATGATGTTCCATGGTATATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtaagtttggtgctccataacattggaagattttgagtgtctagtactaa Alignment from Exonerate_protein2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT tcctcagcaggcttaaatacaagctccagtgtcctctcactgtcctacagATGATTCAGGAAAGGTGCAAGATTCCCAGCTTGTACATATGTTCCCTAATGATGTTCCATGGTATATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtaagtttggtgctccataacattggaagattttgagtgtctagtactaa Alignment from Exonerate_coding2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT tcctcagcaggcttaaatacaagctccagtgtcctctcactgtcctacagATGATTCAGGAAAGGTGCAAGATTCCCAGCTTGTACATATGTTCCCTAATGATGTTCCATGGTATATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtaagtttggtgctccataacattggaagattttgagtgtctagtactaa Alignment from GeneWise ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT tcctcagcaggcttaaatacaagctccagtgtcctctcactgtcctacagATGATTCAGGAAAGGTGCAAGATTCCCAGCTTGTACATATGTTCCCTAATGATGTTCCATGGTATATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtaagtttggtgctccataacattggaagattttgagtgtctagtactaa #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTAT-ACAGCTTTCCTCTTCATCCGCACAg tgtggagggcatggtagatattttatgcctcagttctcatctctccccagcaTTTCAATTCTCGTACACTGCCATATTTGGTGCTTATCACAGCATTTC-CTTCATCCACACAggtagcgtcccaccttaccataaacaagagtaaaagattgggttcatcact Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg tgtggagggcatggtagatattttatgcctcagttctcatctctccccagcaTTTCAATTCTCGTACACTGCCATATTTGGTGCTTATCACAGCATTTCCTTCATCCACACAggtagcgtcccaccttaccataaacaagagtaaaagattgggttcatcact Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgtggagggcatggtagatattttatgcctcagttctcatctctccccagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATCACAGCATTTCCTTCATCCACACAGgtagcgtcccaccttaccataaacaagagtaaaagattgggttcatcact Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTAT-ACAGCTTTCCTCTTCATCCGCACAG tgtggagggcatggtagatattttatgcctcagttctcatctctccccagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATCACAGCATTTC-CTTCATCCACACAGgtagcgtcccaccttaccataaacaagagtaaaagattgggttcatcact Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTAT-ACAGCTTTCCTCTTCATCCGCACAG tgtggagggcatggtagatattttatgcctcagttctcatctctccccagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATCACAGCATTTC-CTTCATCCACACAGgtagcgtcccaccttaccataaacaagagtaaaagattgggttcatcact Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgtggagggcatggtagatattttatgcctcagttctcatctctccccagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATCACAGCATTTCCTTCATCCACACAGgtagcgtcccaccttaccataaacaagagtaaaagattgggttcatcact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgtggagggcatggtagatattttatgcctcagttctcatctctccccagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATCACAGCATTTCCTTCATCCACACAGgtagcgtcccaccttaccataaacaagagtaaaagattgggttcatcact #### Rce1_ID576_6 --> 2 - 1 Original Alignment CTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAG-CAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CTTTCTTGGGGTTggttagtttattgtgtagttctcctttttaattttagctCATTTTCAGCACATTATAGAGCCAGTTAC-CTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaagagggaaaagtagtaatgaagagaaaaaagggctggctctttatag Alignment from CESAR CTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CTTTCTTGGGGTTggtacgtttattgtgtagttctcctttttaattttagctCATTTTCAGCACATTATAGAGCCAGTTACCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaagagggaaaagtagtaatgaagagaaaaaagggctggctctttatag Alignment from Spaln_aa2Genome CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgttagtttattgtgtagttctcctttttaattttagCTCATTTTCAGCACATTATAGAGCCAGTTACCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaagagggaaaagtagtaatgaagagaaaaaagggctggctctttatag Alignment from Spaln_nt2Genome CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgttagtttattgtgtagttctcctttttaattttagCTCATTTTCAGCACATTATAGAGCCAGTTACCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaagagggaaaagtagtaatgaagagaaaaaagggctggctctttatag Alignment from Pairagon CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgttagtttattgtgtagttctcctttttaattttagCTCATTTTCAGCACATTATAGAGCCAGTTACCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaagagggaaaagtagtaatgaagagaaaaaagggctggctctttatag Alignment from Exonerate_protein2genome CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgttagtttattgtgtagttctcctttttaattttagCTCATTTTCAGCACATTATAGAGCCAGTTACCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaagagggaaaagtagtaatgaagagaaaaaagggctggctctttatag Alignment from Exonerate_coding2genome CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgttagtttattgtgtagttctcctttttaattttagCTCATTTTCAGCACATTATAGAGCCAGTTACCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaagagggaaaagtagtaatgaagagaaaaaagggctggctctttatag Alignment from GeneWise CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgttagtttattgtgtagttctcctttttaattttagCTCATTTTCAGCACATTATAGAGCCAGTTACCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaagagggaaaagtagtaatgaagagaaaaaagggctggctctttatag #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGAT-TGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg aaatgtgagaagtactgcaccttatgctctaatcccattctggatcctagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACCTGTCCCT-TGACTTGACAGATGGATTGAAAGTTGTTCTGggtacgttccacgtcttgcgaggagagaagaatacaaaagcagtgcaaaag Alignment from CESAR ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg aaatgtgagaagtactgcaccttatgctctaatcccattctggatcctagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACCTGTCCCTTGACTTGACAGATGGATTGAAAGTTGTTCTGggtacgttccacgtcttgcgaggagagaagaatacaaaagcagtgcaaaag Alignment from Spaln_aa2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttatgctctaatcccattctggatcctagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACCTGTCCCTTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtacgttccacgtcttgcgaggagagaagaatacaaaagcagtgcaaaag Alignment from Spaln_nt2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttatgctctaatcccattctggatcctagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACCTGTCCCTTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtacgttccacgtcttgcgaggagagaagaatacaaaagcagtgcaaaag Alignment from Pairagon ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTG-----TGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttatgctctaatcccattctggatcctagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGA-----CCTGTCCCTTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtacgttccacgtcttgcgaggagagaagaatacaaaagcagtgcaaaag Alignment from Exonerate_protein2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttatgctctaatcccattctggatcctagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACCTGTCCCTTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtacgttccacgtcttgcgaggagagaagaatacaaaagcagtgcaaaag Alignment from Exonerate_coding2genome aaatgtgagaagtactgcaccttatgctctaatcccattctggatcctagatccttttcccaggtccactgacacagctttctatggacctgtcccttgacttgacagatggattgaaagttgttctgggtacgttccacgtcttgcgaggagagaagaatacaaaagcagtgcaaaag Alignment from GeneWise ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aaatgtgagaagtactgcaccttatgctctaatcccattctggatcctagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACCTGTCCCTTGACTTGACAGATGGATTGAAAGTTGTTCTGGgtacgttccacgtcttgcgaggagagaagaatacaaaagcagtgcaaaag #### Rcor2_ID2093_4 --> 0 - 0 Original Alignment GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGG-TTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtccatgacccacttcatttgtccacagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGCTTCCATGGCA-GTGCTTTCAGCGTATCCAGCAAATGgtaagtattagttccccttgaataccccccagccttgatgcagatctact Alignment from CESAR GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtccatgacccacttcatttgtccacagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGCTTCCATGGCAGTGCTTTCAGCGTATCCAGCAAATGgtaagtattagttccccttgaataccccccagccttgatgcagatctact Alignment from Spaln_aa2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtccatgacccacttcatttgtccacagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGCTTCCATGGCAGTGCTTTCAGCGTATCCAGCAAATGgtaagtattagttccccttgaataccccccagccttgatgcagatctact Alignment from Spaln_nt2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGG-TTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtccatgacccacttcatttgtccacagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGCTTCCATGGC-AGTGCTTTCAGCGTATCCAGCAAATGgtaagtattagttccccttgaataccccccagccttgatgcagatctact Alignment from Pairagon GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGG-TTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtccatgacccacttcatttgtccacagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGCTTCCATGGC-AGTGCTTTCAGCGTATCCAGCAAATGgtaagtattagttccccttgaataccccccagccttgatgcagatctact Alignment from Exonerate_protein2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtccatgacccacttcatttgtccacagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGCTTCCATGGCAGTGCTTTCAGCGTATCCAGCAAATGgtaagtattagttccccttgaataccccccagccttgatgcagatctact Alignment from Exonerate_coding2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtccatgacccacttcatttgtccacagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGCTTCCATGGCAGTGCTTTCAGCGTATCCAGCAAATGgtaagtattagttccccttgaataccccccagccttgatgcagatctact Alignment from GeneWise GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtccatgacccacttcatttgtccacagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGAAATCACTAGCTGACCTGGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGCTTCCATGGCAGTGCTTTCAGCGTATCCAGCAAATGgtaagtattagttccccttgaataccccccagccttgatgcagatctact #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTC-AACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cctcccttctcccattttttcattgatatggggtggtgcctgttttccagGCTAATACCAAATTCCAACTCCCGCT-GACCACTGATGAGGAACTTTTAGCAGTTCAAggtgagttacgctactgtgggtttccaagaatctcggagatgattgagacc Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cctcccttctcccattttttcattgatatggggtggtgcctgttttccagGCTAATACCAAATTCCAACTCCCGCTGACCACTGATGAGGAACTTTTAGCAGTTCAAggtgagttacgctactgtgggtttccaagaatctcggagatgattgagacc Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cctcccttctcccattttttcattgatatggggtggtgcctgttttccagGCTAATACCAAATTCCAACTCCCGCTGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtgagttacgctactgtgggtttccaagaatctcggagatgattgagacc Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cctcccttctcccattttttcattgatatggggtggtgcctgttttccagGCTAATACCAAATTCCAACTCCCGCTGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtgagttacgctactgtgggtttccaagaatctcggagatgattgagacc Alignment from Pairagon GCTAATACCAAGTT-CAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cctcccttctcccattttttcattgatatggggtggtgcctgttttccagGCTAATACCAAATTCCAACTCCCGCT-GACCACTGATGAGGAACTTTTAGCAGTTCAAGgtgagttacgctactgtgggtttccaagaatctcggagatgattgagacc Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cctcccttctcccattttttcattgatatggggtggtgcctgttttccagGCTAATACCAAATTCCAACTCCCGCTGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtgagttacgctactgtgggtttccaagaatctcggagatgattgagacc Alignment from Exonerate_coding2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cctcccttctcccattttttcattgatatggggtggtgcctgttttccagGCTAATACCAAATTCCAACTCCCGCTGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtgagttacgctactgtgggtttccaagaatctcggagatgattgagacc Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cctcccttctcccattttttcattgatatggggtggtgcctgttttccagGCTAATACCAAATTCCAACTCCCGCTGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtgagttacgctactgtgggtttccaagaatctcggagatgattgagacc #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAA-GACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggaggggccaactgttttgtccaaactttgtttttgtgaccttaaagccATTTGTAGATATGGGACACGACTTTGGGG-TATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtaagagacctctccatggaaacctgtccttatgcccttccagGTACAGA Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggaggggccaactgttttgtccaaactttgtttttgtgaccttaaagccATTTGTAGATATGGGACACGACTTTGGGGTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtaagagacctctccatggaaatttttcttttctgttttacagGTACAGA Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggaggggccaactgttttgtccaaactttgtttttgtgaccttaaagCCATTTGTAGATATGGGACACGACTTTGGGGTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtaagagacctctccatggaaacctgtccttatgcccttccagGTACAGA Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAA-GACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggaggggccaactgttttgtccaaactttgtttttgtgaccttaaagCCATTTGTAGATATGGGACACGACTTTGGGG-TATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtaagagacctctccatggaaacctgtccttatgcccttccagGTACAGA Alignment from Pairagon CTATTCGTAGATACGGCA-AAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggaggggccaactgttttgtccaaactttgtttttgtgaccttaaagCCATTTGTAGATATGGGACACGACTTTGGGG-TATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtaagagacctctccatggaaacctgtccttatgcccttccagGTACAGA Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggaggggccaactgttttgtccaaactttgtttttgtgaccttaaagCCATTTGTAGATATGGGACACGACTTTGGGGTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtaagagacctctccatggaaacctgtccttatgcccttccagGTACAGA Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggaggggccaactgttttgtccaaactttgtttttgtgaccttaaagCCATTTGTAGATATGGGACACGACTTTGGGGTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtaagagacctctccatggaaacctgtccttatgcccttccagGTACAGA Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggaggggccaactgttttgtccaaactttgtttttgtgaccttaaagCCATTTGTAGATATGGGACACGACTTTGGGGTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtaagagacctctccatggaaacctgtccttatgcccttccagGTACAGA #### Rela_ID1128_5 --> 1 - 1 Original Alignment cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCC-ATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg agaacatgactttccttagcaaatctaacaaatcttttcttttctttcagtTTCCAGAATTTAGGCATACAGTGTGTGAAAAAGCGCGACCTGGCACAAGCACATAAGTC-GCGAATTCAGACTACCAATAACTCATTTCACggtaattagcagggcagaaaggaattccatctctatatggaccattaatct Alignment from CESAR cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg agaacatgactttccttagcaaatctaacaaatcttttcttttctttcagtTTCCAGAATTTAGGCATACAGTGTGTGAAAAAGCGCGACCTGGCACAAGCACATAAGTCGCGAATTCAGACTACCAATAACTCATTTCACggtaattagcagggcagaaaggaattccatctctatatggaccattaatct Alignment from Spaln_aa2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG agaacatgactttccttagcaaatctaacaaatcttttcttttctttcagTTTCCAGAATTTAGGCATACAGTGTGTGAAAAAGCGCGACCTGGCACAAGCACATAAGTCGCGAATTCAGACTACCAATAACTCATTTCACGgtaattagcagggcagaaaggaattccatctctatatggaccattaatct Alignment from Spaln_nt2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGC-CATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG agaacatgactttccttagcaaatctaacaaatcttttcttttctttcagTTTCCAGAATTTAGGCATACAGTGTGTGAAAAAGCGCGACCTGGCACAAGCACATAAGTC-GCGAATTCAGACTACCAATAACTCATTTCACGgtaattagcagggcagaaaggaattccatctctatatggaccattaatct Alignment from Pairagon CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGC-CATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG agaacatgactttccttagcaaatctaacaaatcttttcttttctttcagTTTCCAGAATTTAGGCATACAGTGTGTGAAAAAGCGCGACCTGGCACAAGCACATAAGTC-GCGAATTCAGACTACCAATAACTCATTTCACGgtaattagcagggcagaaaggaattccatctctatatggaccattaatct Alignment from Exonerate_protein2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG agaacatgactttccttagcaaatctaacaaatcttttcttttctttcagTTTCCAGAATTTAGGCATACAGTGTGTGAAAAAGCGCGACCTGGCACAAGCACATAAGTCGCGAATTCAGACTACCAATAACTCATTTCACGgtaattagcagggcagaaaggaattccatctctatatggaccattaatct Alignment from Exonerate_coding2genome agaacatgactttccttagcaaatctaacaaatcttttcttttctttcagtttccagaatttaggcatacagtgtgtgaaaaagcgcgacctggcacaagcacataagtcgcgaattcagactaccaataactcatttcacggtaattagcagggcagaaaggaattccatctctatatggaccattaatct Alignment from GeneWise CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG agaacatgactttccttagcaaatctaacaaatcttttcttttctttcagTTTCCAGAATTTAGGCATACAGTGTGTGAAAAAGCGCGACCTGGCACAAGCACATAAGTCGCGAATTCAGACTACCAATAACTCATTTCACGgtaattagcagggcagaaaggaattccatctctatatggaccattaatct #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG-ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG A gattttagaacattgggcagaggaagctttatataacctttccctttaaggCCAGCGACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTCAGCCTTCACGAGCGACTGTTGCATCACATGTC-TGTGTGGTTACGGCTCCGGGCCAATGCAGCTACTGTACTACATGTGCTAAGTACAAAACCTCCAGGGgtaagcctcttagttacaagacctaaaccagctctgaccttggttccagA Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG A gattttagaacattgggcagaggaagctttatataacctttccctttaaggCCAGCGACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTCAGCCTTCACGAGCGACTGTTGCATCACATGTCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTACTGTACTACATGTGCTAAGTACAAAACCTCCAGGGgtaagcctcttagttacaagacctaaacgttgctcttctgtctctgtagA Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG A gattttagaacattgggcagaggaagctttatataacctttccctttaagGCCAGCGACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTCAGCCTTCACGAGCGACTGTTGCATCACATGTCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTACTGTACTACATGTGCTAAGTACAAAACCTCCAGGGgtaagcctcttagttacaagacctaaaccagctctgaccttggttccagA Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG-ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG A gattttagaacattgggcagaggaagctttatataacctttccctttaagGCCAGCGACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTCAGCCTTCACGAGCGACTGTTGCATCA-CATGTCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTACTGTACTACATGTGCTAAGTACAAAACCTCCAGGGgtaagcctcttagttacaagacctaaaccagctctgaccttggttccagA Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG------ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG A gattttagaacattgggcagaggaagctttatataacctttccctttaagGCCAGCGACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTCAGCCTTCACGAGCGACTGTTGCATCACAT------GTCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTACTGTACTACATGTGCTAAGTACAAAACCTCCAGGGgtaagcctcttagttacaagacctaaaccagctctgaccttggttccagA Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG A gattttagaacattgggcagaggaagctttatataacctttccctttaagGCCAGCGACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTCAGCCTTCACGAGCGACTGTTGCATCACATGTCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTACTGTACTACATGTGCTAAGTACAAAACCTCCAGGGgtaagcctcttagttacaagacctaaaccagctctgaccttggttccagA Alignment from Exonerate_coding2genome AAGCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG A gattttagaacattgggcagaggaagctttatataacctttccctttaAGGCCAGCGACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTCAGCCTTCACGAGCGACTGTTGCATCACATGTCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTACTGTACTACATGTGCTAAGTACAAAACCTCCAGGGgtaagcctcttagttacaagacctaaaccagctctgaccttggttccagA Alignment from GeneWise AAGCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG A gattttagaacattgggcagaggaagctttatataacctttccctttaAGGCCAGCGACAGACCCACTGTATGACACTCCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAACCAGCATGCAAAGTCAGCCTTCACGAGCGACTGTTGCATCACATGTCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTACTGTACTACATGTGCTAAGTACAAAACCTCCAGGGgtaagcctcttagttacaagacctaaaccagctctgaccttggttccagA #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTG-GCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg tgactctaaattcaagacctctaacacaacactccgacttttctttctaggaGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGTTAAGTCTTATTTTGCGCACAGT-TGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACTGCAGGTGAGggtgagtatcattcttatatagtatgacctggtacttgttataggtcctta Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg tgactctaaattcaagacctctaacacaacactccgacttttctttctaggaGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGTTAAGTCTTATTTTGCGCACAGTTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACTGCAGGTGAGggtgagtatcattcttatatagtatgacctggtacttgttataggtcctta Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgactctaaattcaagacctctaacacaacactccgacttttctttctagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGTTAAGTCTTATTTTGCGCACAGTTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACTGCAGGTGAGGgtgagtatcattcttatatagtatgacctggtacttgttataggtcctta Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG---AGG tgactctaaattcaagacctctaacacaacactccgacttttctttctagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGTTAAGTCTTATTTTGCGCACAGTTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACTGCAGGTGAGGgtgagtatcattcttatatagtatgacctggtacttgttataggtcctta Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTG-GCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGA---GAGG tgactctaaattcaagacctctaacacaacactccgacttttctttctagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGTTAAGTCTTATTTTGCGCACAGT-TGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACTGCAGGTGAGGgtgagtatcattcttatatagtatgacctggtacttgttataggtcctta Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgactctaaattcaagacctctaacacaacactccgacttttctttctagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGTTAAGTCTTATTTTGCGCACAGTTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACTGCAGGTGAGGgtgagtatcattcttatatagtatgacctggtacttgttataggtcctta Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgactctaaattcaagacctctaacacaacactccgacttttctttctagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGTTAAGTCTTATTTTGCGCACAGTTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACTGCAGGTGAGGgtgagtatcattcttatatagtatgacctggtacttgttataggtcctta Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgactctaaattcaagacctctaacacaacactccgacttttctttctagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGTTAAGTCTTATTTTGCGCACAGTTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACTGCAGGTGAGGgtgagtatcattcttatatagtatgacctggtacttgttataggtcctta #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGT-CGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cataggtcttgaggtccatgggtttgactgactttgggcatggactgcaggaTTACAGGTACCATTTCATGGCCTGTGGCTTGT-GGGTGAGGAGGTAGCTGTGCCTCCAGAGTTTGCAGGATTTGTAATGGTCACAGAA------------------------------------------------------------GATGATGCCCAGGAACCATTGGAGAGAGTCTTAgtgaggatttagagagagtactagtgggcatgaagagattatacaagtga Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cataggtcttgaggtccatgggtttgactgactttgggcatggactgcaggaTTACAGGTACCATTTCATGGCCTGTGGCTTGTGGGTGAGGAGGTAGCTGTGCCTCCAGAGTTTGCAGGATTTGTAATGGTCACAGAA------------------------------------------------------------GATGATGCCCAGGAACCATTGGAGAGAGTCTTAgtgaggatttagagagagtactagtgggcatgaagagattatacaagtga Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cataggtcttgaggtccatgggtttgactgactttgggcatggactgcagGATTACAGGTACCATTTCATGGCCTGTGGCTTGTGGGTGAGGAGGTAGCTGTGCCTCCAGAGTTTGCAGGATTTGTAATGGTCACAGAA------------------------------------------------------------GATGATGCCCAGGAACCATTGGAGAGAGTCTTAgtgaggatttagagagagtactagtgggcatgaagagattatacaagtga Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGG-ACGAGGCGCAGGAGCCGCTG- cataggtcttgaggtccatgggtttgactgactttgggcatggactgcagGATTACAGGTACCATTTCATGGCCTGTGGCTTGTGGGTGAGGAGGTAGCTGTGCCTCCAGAGTTTGCAGGATTTGTAATGGTCACAGAAGATGATGCCCAGGAACCATTGGAGAGAGTCTTAGTGAGGATTTAGAGAGAGTACTAGTGGGCATGAAGAGATTATACAAGTGA Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCG------GGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cataggtcttgaggtccatgggtttgactgactttgggcatggactgcagGATTACAGGTACCATT------TCATGGCCTGTGGCTTGTGGGTGAGGAGGTAGCTGTGCCTCCAGAGTTTGCAGGATTTGTAATGGTCACAGA------------------------------------------------------------AGATGATGCCCAGGAACCATTGGAGAGAGTCTTAgtgaggatttagagagagtactagtgggcatgaagagattatacaagtga Alignment from Exonerate_protein2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAG cataggtcttgaggtccatgggtttgactgactttgggcatggactgcagGATTACAGGTACCATTTCATGGCCTGTGGCTTGTGGGTGAGGAGGTAGCTGTGCCTCCAGAGTTTGCAGGATTTGTAATGGTCACAGAAGATGATGCCCAGgaaccattggagagagtcttagtgaggatttagagagagtactagtgggcatgaagagattatacaagtga Alignment from Exonerate_coding2genome cataggtcttgaggtccatgggtttgactgactttgggcatggactgcaggattacaggtaccatttcatggcctgtggcttgtgggtgaggaggtagctgtgcctccagagtttgcaggatttgtaatggtcacagaagatgatgcccaggaaccattggagagagtcttagtgaggatttagagagagtactagtgggcatgaagagattatacaagtga Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cataggtcttgaggtccatgggtttgactgactttgggcatggactgcagGATTACAGGTACCATTTCATGGCCTGTGGCTTGTGGGTGAGGAGGTAGCTGTGCCTCCAGAGTTTGCAGGATTTGTAATGGTCACAGAA------------------------------------------------------------GATGATGCCCAGGAACCATTGGAGAGAGTCTTAgtgaggatttagagagagtactagtgggcatgaagagattatacaagtga #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATC-GGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaagtgtatccaactaatgtacaaatgctttaccactctctatctagGACCGCCTTATCCGGGGCCA-TGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCGGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtgaggagactgaagaaacttgcccccaagggctcataattcctttcacc Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaagtgtatccaactaatgtacaaatgctttaccactctctatctagGACCGCCTTATCCGGGGCCATGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCGGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtgaggagactgaagaaacttgcccccaagggctcataattcctttcacc Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaagtgtatccaactaatgtacaaatgctttaccactctctatctagGACCGCCTTATCCGGGGCCATGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCGGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtgaggagactgaagaaacttgcccccaagggctcataattcctttcacc Alignment from Spaln_nt2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaagtgtatccaactaatgtacaaatgctttaccactctctatctagGACCGCCTTATCCGGGGCCATGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCGGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtgaggagactgaagaaacttgcccccaagggctcataattcctttcacc Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaagtgtatccaactaatgtacaaatgctttaccactctctatctagGACCGCCTTATCCGGGGCCATGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCGGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtgaggagactgaagaaacttgcccccaagggctcataattcctttcacc Alignment from Exonerate_protein2genome gtacaagtgtatccaactaatgtacaaatgctttaccactctctatctaggaccgccttatccggggccatgggagcttcagccatttcaccttgtgggatctggaaacagtcccaggtccggatgccatagtgcatagggccctaggatggcccacccttgcggcagcagtgaggagactgaagaaacttgcccccaagggctcataattcctttcacc Alignment from Exonerate_coding2genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATT gtacaagtgtatccaactaatgtacaaatgctttaccactctctatctagGACCGCCTTATCCGGGGCCATGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCGGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAGTGaggagactgaagaaacttgcccccaagggctcataattcctttcacc Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCCCAGGTCCCTGAGGAC gtacaagtgtatccaactaatgtacaaatgctttaccactctctatctagGACCGCCTTATCCGGGGCCATGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCGGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAGTGAGGAGACTGAAGAAACTTGCCcccaagggctcataattcctttcacc #### Rps6kb2_ID372_10 --> 0 - 0 Original Alignment CCGCCCTTCACTGCAGAGAACCGGAAG-AAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG agcgcaactgcattgagctcttccttgctcgtttctcaattctgtgtcagCCACCTTTCACTGCTGAGAACCGGAAGCAAAC-AACTGATAATATAATTAAAAGTAAGTTA---CTCCCACCAGATCTTATGCCTGATGCTCGGGACCTTGCTAGAAAGgtgagctccattctcagtcaaaaaattacacacacctccttcagatttcc Alignment from CESAR CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG agcgcaactgcattgagctcttccttgctcgtttctcaattctgtgtcagCCACCTTTCACTGCTGAGAACCGGAAGCAAACAACTGATAATATAATTAAAAGTAAGTTA---CTCCCACCAGATCTTATGCCTGATGCTCGGGACCTTGCTAGAAAGgtgagctccattctcagtcaaaaaattacacacacctccttcagatttcc Alignment from Spaln_aa2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG agcgcaactgcattgagctcttccttgctcgtttctcaattctgtgtcagCCACCTTTCACTGCTGAGAACCGGAAGCAAACAACTGATAATATAATTAAAAGTAAGTTA---CTCCCACCAGATCTTATGCCTGATGCTCGGGACCTTGCTAGAAAGgtgagctccattctcagtcaaaaaattacacacacctccttcagatttcc Alignment from Spaln_nt2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG agcgcaactgcattgagctcttccttgctcgtttctcaattctgtgtcagCCACCTTTCACTGCTGAGAACCGGAAGCAAACAACTGATAATATAATTAAAAGTAA---GTTACTCCCACCAGATCTTATGCCTGATGCTCGGGACCTTGCTAGAAAGgtgagctccattctcagtcaaaaaattacacacacctccttcagatttcc Alignment from Pairagon CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAG----------------------CTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG agcgcaactgcattgagctcttccttgctcgtttctcaattctgtgtcagCCACCTTTCACTGCTGAGAACCGGAAGCAAACAACTGATAATATAATTAAAAGTAAGTTACTCCCACCAGATCTTATGCCT-------------------------GATGCTCGGGACCTTGCTAGAAAGgtgagctccattctcagtcaaaaaattacacacacctccttcagatttcc Alignment from Exonerate_protein2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG agcgcaactgcattgagctcttccttgctcgtttctcaattctgtgtcagCCACCTTTCACTGCTGAGAACCGGAAGCAAACAACTGATAATATAATTAAAAGTAAGTTA---CTCCCACCAGATCTTATGCCTGATGCTCGGGACCTTGCTAGAAAGgtgagctccattctcagtcaaaaaattacacacacctccttcagatttcc Alignment from Exonerate_coding2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG agcgcaactgcattgagctcttccttgctcgtttctcaattctgtgtcagCCACCTTTCACTGCTGAGAACCGGAAGCAAACAACTGATAATATAATTAAAAGTAAGTTA---CTCCCACCAGATCTTATGCCTGATGCTCGGGACCTTGCTAGAAAGgtgagctccattctcagtcaaaaaattacacacacctccttcagatttcc Alignment from GeneWise CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG agcgcaactgcattgagctcttccttgctcgtttctcaattctgtgtcagCCACCTTTCACTGCTGAGAACCGGAAGCAAACAACTGATAATATAATTAAAAGTAAGTTA---CTCCCACCAGATCTTATGCCTGATGCTCGGGACCTTGCTAGAAAGgtgagctccattctcagtcaaaaaattacacacacctccttcagatttcc #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTAGTGCGCACTGGT-CACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccaaacggggctacaactgcacatttctctatattttacaggGTGCCAGAGATTCTGTTGCGCACAGGTCCATA-TCGGGCAGTGGATTGGTGGAGCCTTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtaatacccttccactaggtgatactggtattggagcgcaactgcattga Alignment from CESAR gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccaaacggggctacaactgcacatttctctatattttacaggGTGCCAGAGATTCTGTTGCGCACAGGTCCATATCGGGCAGTGGATTGGTGGAGCCTTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtaatacccttccactaggtgatactggtattggagcgcaactgcattga Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccaaacggggctacaactgcacatttctctatattttacagGGTGCCAGAGATTCTGTTGCGCACAGGTCCATATCGGGCAGTGGATTGGTGGAGCCTTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtaatacccttccactaggtgatactggtattggagcgcaactgcattga Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccaaacggggctacaactgcacatttctctatattttacagGGTGCCAGAGATTCTGTTGCGCACAGGTCCATATCGGGCAGTGGATTGGTGGAGCCTTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtaatacccttccactaggtgatactggtattggagcgcaactgcattga Alignment from Pairagon GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccaaacggggctacaactgcacatttctctatattttacagGGTGCCAGAGATTCTGTTGCGCACAGGTCCATATCGGGCAGTGGATTGGTGGAGCCTTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtaatacccttccactaggtgatactggtattggagcgcaactgcattga Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccaaacggggctacaactgcacatttctctatattttacagGGTGCCAGAGATTCTGTTGCGCACAGGTCCATATCGGGCAGTGGATTGGTGGAGCCTTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtaatacccttccactaggtgatactggtattggagcgcaactgcattga Alignment from Exonerate_coding2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccaaacggggctacaactgcacatttctctatattttacagGGTGCCAGAGATTCTGTTGCGCACAGGTCCATATCGGGCAGTGGATTGGTGGAGCCTTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtaatacccttccactaggtgatactggtattggagcgcaactgcattga Alignment from GeneWise GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccaaacggggctacaactgcacatttctctatattttacagGGTGCCAGAGATTCTGTTGCGCACAGGTCCATATCGGGCAGTGGATTGGTGGAGCCTTGGGGCTCTAATGTATGACATGCTCACTGAATCAgtaatacccttccactaggtgatactggtattggagcgcaactgcattga #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCT-GAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagcATTGAGGAAATTTCAGCTGACTCACAAGGATG-GTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------TTGGTC------AGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGggtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagcATTGAGGAAATTTCAGCTGACTCACAAGGATGGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------TTGGTC------AGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGggtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCACAAGGATGGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------TTGGTC------AGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCACAAGGATGGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGC------AATTGG------TCAGGAGCCGATCATG---GAAGGATGGAGGTGG---TGCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGA-----TGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTC-----ACAAGGATGGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA-------------------------------------------------------------------------------------------------TTGgtcaggagccgatcatggaaggatggaggtggtgcacctctcaatttcccaaaagtagcacatcgtatccagggtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCACAAGGATGGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------------TTGGTCAGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCACAAGGATGGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------------TTGGTCAGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCACAAGGATGGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------------TTGGTCAGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg #### Rrp12_ID8297_26 --> 0 - 2 Original Alignment ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATC-AAGTTCACCCGCAAGTTTgg taatgatggatgacctaggtggataatgaaaaacatctgcttttttccagATGGAAGCAATAGGGAAACTGTCAGATGACATGCAACGGCACTTCCGGATGAAACTCCAGAATCTGTTCATCCAAGT-CACACGCAAGTTTgggtgggtcaaaagtagagggagaatggaacatggtgtatttgcagggtcct Alignment from CESAR ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg taatgatggatgacctaggtggataatgaaaaacatctgcttttttccagATGGAAGCAATAGGGAAACTGTCAGATGACATGCAACGGCACTTCCGGATGAAACTCCAGAATCTGTTCATCCAAGTCACACGCAAGTTTgggtgggtcaaaagtagagggagaatggaacatggtgtatttgcagggtcct Alignment from Spaln_aa2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatgacctaggtggataatgaaaaacatctgcttttttccagATGGAAGCAATAGGGAAACTGTCAGATGACATGCAACGGCACTTCCGGATGAAACTCCAGAATCTGTTCATCCAAGTCACACGCAAGTTTGGgtgggtcaaaagtagagggagaatggaacatggtgtatttgcagggtcct Alignment from Spaln_nt2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatgacctaggtggataatgaaaaacatctgcttttttccagATGGAAGCAATAGGGAAACTGTCAGATGACATGCAACGGCACTTCCGGATGAAACTCCAGAATCTGTTCATCCAAGTCACACGCAAGTTTGGgtgggtcaaaagtagagggagaatggaacatggtgtatttgcagggtcct Alignment from Pairagon ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatgacctaggtggataatgaaaaacatctgcttttttccagATGGAAGCAATAGGGAAACTGTCAGATGACATGCAACGGCACTTCCGGATGAAACTCCAGAATCTGTTCATCCAAGTCACACGCAAGTTTGGgtgggtcaaaagtagagggagaatggaacatggtgtatttgcagggtcct Alignment from Exonerate_protein2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatgacctaggtggataatgaaaaacatctgcttttttccagATGGAAGCAATAGGGAAACTGTCAGATGACATGCAACGGCACTTCCGGATGAAACTCCAGAATCTGTTCATCCAAGTCACACGCAAGTTTGGgtgggtcaaaagtagagggagaatggaacatggtgtatttgcagggtcct Alignment from Exonerate_coding2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatgacctaggtggataatgaaaaacatctgcttttttccagATGGAAGCAATAGGGAAACTGTCAGATGACATGCAACGGCACTTCCGGATGAAACTCCAGAATCTGTTCATCCAAGTCACACGCAAGTTTGGgtgggtcaaaagtagagggagaatggaacatggtgtatttgcagggtcct Alignment from GeneWise ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgatggatgacctaggtggataatgaaaaacatctgcttttttccagATGGAAGCAATAGGGAAACTGTCAGATGACATGCAACGGCACTTCCGGATGAAACTCCAGAATCTGTTCATCCAAGTCACACGCAAGTTTGGgtgggtcaaaagtagagggagaatggaacatggtgtatttgcagggtcct #### Rrp12_ID8298_25 --> 2 - 0 Original Alignment ggCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCC-GCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctaggcTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCCGCACTAG-CTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from CESAR ggCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctaggcTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCCGCACTAGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Spaln_aa2Genome GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCCGCACTAGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Spaln_nt2Genome GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAA-GTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCCGCACTA-GCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Pairagon GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGT-CAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCCGCACTA-GCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Exonerate_protein2genome GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCCGCACTAGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Exonerate_coding2genome GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCCGCACTAGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from GeneWise GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCCGCACTAGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGCTTCCTG-GAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag atcataggtaatggatgggtcttttaggtgccatttcctcttcctcacagCTGGTGAATAGCTTCCTACGAGAAAGCCA-TGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACCaggtgagtctgagcttttcaggtgccttggtgtacaatgcatggtacatgac Alignment from CESAR TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag atcataggtaatggatgggtcttttaggtgccatttcctcttcctcacagCTGGTGAATAGCTTCCTACGAGAAAGCCATGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACCaggtgagtctgagcttttcaggtgccttggtgtacaatgcatggtacatgac Alignment from Spaln_aa2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG atcataggtaatggatgggtcttttaggtgccatttcctcttcctcacagCTGGTGAATAGCTTCCTACGAGAAAGCCATGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACCAGgtgagtctgagcttttcaggtgccttggtgtacaatgcatggtacatgac Alignment from Spaln_nt2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG atcataggtaatggatgggtcttttaggtgccatttcctcttcctcacagCTGGTGAATAGCTTCCTACGAGAAAGCCATGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACCAGgtgagtctgagcttttcaggtgccttggtgtacaatgcatggtacatgac Alignment from Pairagon TTGGTGAATAGCTTCCTG-GAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG atcataggtaatggatgggtcttttaggtgccatttcctcttcctcacagCTGGTGAATAGCTTCCTACGAGAAAGCCA-TGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACCAGgtgagtctgagcttttcaggtgccttggtgtacaatgcatggtacatgac Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG atcataggtaatggatgggtcttttaggtgccatttcctcttcctcacagCTGGTGAATAGCTTCCTACGAGAAAGCCATGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACCAGgtgagtctgagcttttcaggtgccttggtgtacaatgcatggtacatgac Alignment from Exonerate_coding2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG atcataggtaatggatgggtcttttaggtgccatttcctcttcctcacagCTGGTGAATAGCTTCCTACGAGAAAGCCATGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACCAGgtgagtctgagcttttcaggtgccttggtgtacaatgcatggtacatgac Alignment from GeneWise TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG atcataggtaatggatgggtcttttaggtgccatttcctcttcctcacagCTGGTGAATAGCTTCCTACGAGAAAGCCATGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACCAGgtgagtctgagcttttcaggtgccttggtgtacaatgcatggtacatgac #### Rrp12_ID8308_15 --> 1 - 1 Original Alignment gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTT-CGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAg aaccaaaacatcgactgagctaactacaggatgccccttcccacctgcaggGAAAATTTGGACTTT---CAGAGCTGGTTGTTGTCTGTCATCCGGGATTATGTCCCAGGAAA-CCGGCTTGGCTTCTTCACTACCTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAggtaagcaggtcttatctttataagatacaggtcacagaaggaatatcagc Alignment from CESAR gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAg aaccaaaacatcgactgagctaactacaggatgccccttcccacctgcaggGAAAATTTGGACTTT---CAGAGCTGGTTGTTGTCTGTCATCCGGGATTATGTCCCAGGAAACCGGCTTGGCTTCTTCACTACCTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAggtaagcaggtcttatctttataagatacaggtcacagaaggaatatcagc Alignment from Spaln_aa2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG aaccaaaacatcgactgagctaactacaggatgccccttcccacctgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGTTGTCTGTCATCCGGGATTATGTCCCAGGAAACCGGCTTGGCTTCTTCACTACCTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtaagcaggtcttatctttataagatacaggtcacagaaggaatatcagc Alignment from Spaln_nt2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG aaccaaaacatcgactgagctaactacaggatgccccttcccacctgcagGGAAAATTTGGACTT---TCAGAGCTGGTTGTTGTCTGTCATCCGGGATTATGTCCCAGGAAACCGGCTTGGCTTCTTCACTACCTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtaagcaggtcttatctttataagatacaggtcacagaaggaatatcagc Alignment from Pairagon GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG aaccaaaacatcgactgagctaactacaggatgccccttcccacctgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGTTGTCTGTCATCCGGGATTATGTCCCAGGAAACCGGCTTGGCTTCTTCACTACCTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtaagcaggtcttatctttataagatacaggtcacagaaggaatatcagc Alignment from Exonerate_protein2genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG aaccaaaacatcgactgagctaactacaggatgccccttcccacctgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGTTGTCTGTCATCCGGGATTATGTCCCAGGAAACCGGCTTGGCTTCTTCACTACCTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtaagcaggtcttatctttataagatacaggtcacagaaggaatatcagc Alignment from Exonerate_coding2genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG aaccaaaacatcgactgagctaactacaggatgccccttcccacctgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGTTGTCTGTCATCCGGGATTATGTCCCAGGAAACCGGCTTGGCTTCTTCACTACCTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtaagcaggtcttatctttataagatacaggtcacagaaggaatatcagc Alignment from GeneWise GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG aaccaaaacatcgactgagctaactacaggatgccccttcccacctgcagGGAAAATTTGGACTTT---CAGAGCTGGTTGTTGTCTGTCATCCGGGATTATGTCCCAGGAAACCGGCTTGGCTTCTTCACTACCTATTTCTTGCCCCTAGCTACAACCCTTAAGAGAAAAGgtaagcaggtcttatctttataagatacaggtcacagaaggaatatcagc #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAG-ACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ctgatatgccaaaattggcagcactgacaatgtaatttccatttttatagCTTCGTAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGCACACCTC-GATTGTACTCAGTGGCAGTGGCAAGAGCATGAATgcgtgaggaggtaggagttgtcagcttggactggtatgctgaacacaattat Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ctgatatgccaaaattggcagcactgacaatgtaatttccatttttatagCTTCGTAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGCACACCTCGATTGTACTCAGTGGCAGTGGCAAGAGCATGAATgcgtgaggaggtaggagttgtcagcttggactggtatgctgaacacaattat Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ctgatatgccaaaattggcagcactgacaatgtaatttccatttttatagCTTCGTAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGCACACCTCGATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCgtgaggaggtaggagttgtcagcttggactggtatgctgaacacaattat Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ctgatatgccaaaattggcagcactgacaatgtaatttccatttttatagCTTCGTAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGCACACCTCGATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCgtgaggaggtaggagttgtcagcttggactggtatgctgaacacaattat Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAG-ACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ctgatatgccaaaattggcagcactgacaatgtaatttccatttttatagCTTCGTAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGCACACC-TCGATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCgtgaggaggtaggagttgtcagcttggactggtatgctgaacacaattat Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ctgatatgccaaaattggcagcactgacaatgtaatttccatttttatagCTTCGTAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGCACACCTCGATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCGtgaggaggtaggagttgtcagcttggactggtatgctgaacacaattat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ctgatatgccaaaattggcagcactgacaatgtaatttccatttttatagCTTCGTAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGCACACCTCGATTGTACTCAGTGGCAGTGGCAAGAGCATGAATGCGtgaggaggtaggagttgtcagcttggactggtatgctgaacacaattat #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCAC-GGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcctgtaccctccaaaaatgtatttttaaaatagGCTTTCCGGCAACTGTCCCACCGGTTCCATCGGAAAGGGCT-AGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgaggcagaagccatgtggctagtctccatttctgtgaaatctgatatg Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcctgtaccctccaaaaatgtatttttaaaatagGCTTTCCGGCAACTGTCCCACCGGTTCCATCGGAAAGGGCTAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgaggcagaagccatgtggctagtctccatttctgtgaaatctgatatg Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcctgtaccctccaaaaatgtatttttaaaatagGCTTTCCGGCAACTGTCCCACCGGTTCCATCGGAAAGGGCTAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgaggcagaagccatgtggctagtctccatttctgtgaaatctgatatg Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcctgtaccctccaaaaatgtatttttaaaatagGCTTTCCGGCAACTGTCCCACCGGTTCCATCGGAAAGGGCTAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgaggcagaagccatgtggctagtctccatttctgtgaaatctgatatg Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTTCCA-CGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcctgtaccctccaaaaatgtatttttaaaatagGCTTTCCGGCAACTGTCCCACCGGTTCCATCGGAAAGGGCT-AGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgaggcagaagccatgtggctagtctccatttctgtgaaatctgatatg Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcctgtaccctccaaaaatgtatttttaaaatagGCTTTCCGGCAACTGTCCCACCGGTTCCATCGGAAAGGGCTAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgaggcagaagccatgtggctagtctccatttctgtgaaatctgatatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccgcttctagggggttcctgtaccctccaaaaatgtatttttaaaatagGCTTTCCGGCAACTGTCCCACCGGTTCCATCGGAAAGGGCTAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgaggcagaagccatgtggctagtctccatttctgtgaaatctgatatg #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGC-CGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG aagaaagaagtcttctgagggcctgaataggttgacacattactttccaggGCCATTGATGACAAGTACAGTCCAACAGGAGG-GTATAGAGACTTCACTCAGGACTTTAAGGAGAGAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAGAAGgtaaatcaacactttgtaggtaaacaatccacttacaatggttcatggca Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG aagaaagaagtcttctgagggcctgaataggttgacacattactttccaggGCCATTGATGACAAGTACAGTCCAACAGGAGGGTATAGAGACTTCACTCAGGACTTTAAGGAGAGAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAGAAGgtaaatcaacactttgtaggtaaacaatccacttacaatggttcatggca Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG aagaaagaagtcttctgagggcctgaataggttgacacattactttccagGGCCATTGATGACAAGTACAGTCCAACAGGAGGGTATAGAGACTTCACTCAGGACTTTAAGGAGAGAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAGAAGgtaaatcaacactttgtaggtaaacaatccacttacaatggttcatggca Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAG-CCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG aagaaagaagtcttctgagggcctgaataggttgacacattactttccagGGCCATTGATGACAAGTACAGTCCAACAGGAGG-GTATAGAGACTTCACTCAGGACTTTAAGGAGAGAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAGAAGgtaaatcaacactttgtaggtaaacaatccacttacaatggttcatggca Alignment from Pairagon GGCCATTGATGACAAGTACAG-CCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG aagaaagaagtcttctgagggcctgaataggttgacacattactttccagGGCCATTGATGACAAGTACAGTCCAACAGGAGG-GTATAGAGACTTCACTCAGGACTTTAAGGAGAGAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAGAAGgtaaatcaacactttgtaggtaaacaatccacttacaatggttcatggca Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG aagaaagaagtcttctgagggcctgaataggttgacacattactttccagGGCCATTGATGACAAGTACAGTCCAACAGGAGGGTATAGAGACTTCACTCAGGACTTTAAGGAGAGAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAGAAGgtaaatcaacactttgtaggtaaacaatccacttacaatggttcatggca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG aagaaagaagtcttctgagggcctgaataggttgacacattactttccagGGCCATTGATGACAAGTACAGTCCAACAGGAGGGTATAGAGACTTCACTCAGGACTTTAAGGAGAGAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAGAAGgtaaatcaacactttgtaggtaaacaatccacttacaatggttcatggca #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCA-GTGTACTGCATCGAGGATAAGat agggctcaagactttcatgttcccaggagaatctcccatttctcatccaggaTTGCTTGAAACTACAGTGCAAAAGGTTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCACGTGTACT-CATAGGGGATAAGatgtacgctttgccaaaaggggtgatagcaactgccatgattttggagatcc Alignment from CESAR gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat agggctcaagactttcatgttcccaggagaatctcccatttctcatccaggaTTGCTTGAAACTACAGTGCAAAAGGTTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCACGTGTACTCATAGGGGATAAGatgtacgctttgccaaaaggggtgatagcaactgccatgattttggagatcc Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggagaatctcccatttctcatccagGATTGCTTGAAACTACAGTGCAAAAGGTTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCACGTGTACTCATAGGGGATAAGATgtacgctttgccaaaaggggtgatagcaactgccatgattttggagatcc Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCA-GTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggagaatctcccatttctcatccagGATTGCTTGAAACTACAGTGCAAAAGGTTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCACGTGTACT-CATAGGGGATAAGATgtacgctttgccaaaaggggtgatagcaactgccatgattttggagatcc Alignment from Pairagon GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCA-GTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggagaatctcccatttctcatccagGATTGCTTGAAACTACAGTGCAAAAGGTTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCACGTGTACT-CATAGGGGATAAGATgtacgctttgccaaaaggggtgatagcaactgccatgattttggagatcc Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggagaatctcccatttctcatccagGATTGCTTGAAACTACAGTGCAAAAGGTTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCACGTGTACTCATAGGGGATAAGATgtacgctttgccaaaaggggtgatagcaactgccatgattttggagatcc Alignment from Exonerate_coding2genome agggctcaagactttcatgttcccaggagaatctcccatttctcatccaggattgcttgaaactacagtgcaaaaggttgcctgggttgaagctcccaataggaccctaccttcagcacgtgtactcataggggataagatgtacgctttgccaaaaggggtgatagcaactgccatgattttggagatcc Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagactttcatgttcccaggagaatctcccatttctcatccagGATTGCTTGAAACTACAGTGCAAAAGGTTGCCTGGGTTGAAGCTCCCAATAGGACCCTACCTTCAGCACGTGTACTCATAGGGGATAAGATgtacgctttgccaaaaggggtgatagcaactgccatgattttggagatcc #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAAC-GGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattatgctttgctttcttttcacagGACTTTGAGAGGGATGAGGAGCACTCAGCTAACCGGAGGAT-TGAATCAGATGGGGAAGAGAACATTGGTTGGAGCACAATCAACCTCGAC------GAACAGCCTCAGGATgtaagtcctcatgtctataggtggagggcagtgggcatcccccataggtt Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattatgctttgctttcttttcacagGACTTTGAGAGGGATGAGGAGCACTCAGCTAACCGGAGGATTGAATCAGATGGGGAAGAGAACATTGGTTGGAGCACAATCAACCTCGACGAA------CAGCCTCAGGATgtaagtcctcatgtctataggtggagggcagtgggcatcccccataggtt Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattatgctttgctttcttttcacagGACTTTGAGAGGGATGAGGAGCACTCAGCTAACCGGAGGATTGAATCAGATGGGGAAGAGAACATTGGTTGGAGCACAATCAACCTCGACGAA------CAGCCTCAGGATgtaagtcctcatgtctataggtggagggcagtgggcatcccccataggtt Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattatgctttgctttcttttcacagGACTTTGAGAGGGATGAGGAGCACTCAGCTAACCGGAGGATTGAATCAGATGGGGAAGAGAACATTGGTTGGAGCACAATCAACCTCGACG------AACAGCCTCAGGATgtaagtcctcatgtctataggtggagggcagtgggcatcccccataggtt Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattatgctttgctttcttttcacagGACTTTGAGAGGGATGAGGAGCACTCAGCTAACCGGAGGATTGAATCAGATGGGGAAGAGAACATTGGTTGGAGCACAATCAACCTCGACG------AACAGCCTCAGGATgtaagtcctcatgtctataggtggagggcagtgggcatcccccataggtt Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattatgctttgctttcttttcacagGACTTTGAGAGGGATGAGGAGCACTCAGCTAACCGGAGGATTGAATCAGATGGGGAAGAGAACATTGGTTGGAGCACAATCAACCTCGACGAA------CAGCCTCAGGATgtaagtcctcatgtctataggtggagggcagtgggcatcccccataggtt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattatgctttgctttcttttcacagGACTTTGAGAGGGATGAGGAGCACTCAGCTAACCGGAGGATTGAATCAGATGGGGAAGAGAACATTGGTTGGAGCACAATCAACCTCGACGAA------CAGCCTCAGGATgtaagtcctcatgtctataggtggagggcagtgggcatcccccataggtt #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAA-GACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG gggctaacacatgctagggtatcacaaatctgcccaatgtgtcttacaagaaGATGGTGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAACGATG-GGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGACGTCGGCTGCGGCAACTCCAGCAGTTACAGCAGCTCAGGGACAGTGGGGAGAAAgtagggcactaaattagttacaatgagaggactgtgcactgttgtaacaa Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG gggctaacacatgctagggtatcacaaatctgcccaatgtgtcttacaagaaGATGGTGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAACGATGGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGACGTCGGCTGCGGCAACTCCAGCAGTTACAGCAGCTCAGGGACAGTGGGGAGAAAgtagggcactaaattagttacaatgagaggactgtgcactgttgtaacaa Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG gggctaacacatgctagggtatcacaaatctgcccaatgtgtcttacaagAAGATGGTGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAACGATGGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGACGTCGGCTGCGGCAACTCCAGCAGTTACAGCAGCTCAGGGACAGTGGGGAGAAAgtagggcactaaattagttacaatgagaggactgtgcactgttgtaacaa Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG gggctaacacatgctagggtatcacaaatctgcccaatgtgtcttacaagAAGATGGTGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAACGATGGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGACGTCGGCTGCGGCAACTCCAGCAGTTACAGCAGCTCAGGGACAGTGGGGAGAAAgtagggcactaaattagttacaatgagaggactgtgcactgttgtaacaa Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG gggctaacacatgctagggtatcacaaatctgcccaatgtgtcttacaagAAGATGGTGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAACGATGGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGACGTCGGCTGCGGCAACTCCAGCAGTTACAGCAGCTCAGGGACAGTGGGGAGAAAgtagggcactaaattagttacaatgagaggactgtgcactgttgtaacaa Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG gggctaacacatgctagggtatcacaaatctgcccaatgtgtcttacaagAAGATGGTGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAACGATGGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGACGTCGGCTGCGGCAACTCCAGCAGTTACAGCAGCTCAGGGACAGTGGGGAGAAAgtagggcactaaattagttacaatgagaggactgtgcactgttgtaacaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG gggctaacacatgctagggtatcacaaatctgcccaatgtgtcttacaagAAGATGGTGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAACGATGGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGACGTCGGCTGCGGCAACTCCAGCAGTTACAGCAGCTCAGGGACAGTGGGGAGAAAgtagggcactaaattagttacaatgagaggactgtgcactgttgtaacaa #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGC-GAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG tgaggctaatcagtctgtgagaacaagcttgtgtcccccgcttatcctagCGGAGACCTTGTTCAATTCTAGCTAAGTATGATGAGGAATTAGGCAGTCGAGCGTCCAC-TTCCTGCCGTCTTAAGCATGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACTAAGCTTCGACTACCAGCCCAATCGCTAAGTTTAATGGGCCCCAGACTTAGTACCCAGTATCTTAGTCCTGAAGAGATGgtgagtcagtgggttatggtcatcaatacagtcctgttcacaccccctag Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGA---CCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG tgagcctaatcagtctgtgagaacaagcttgtgtcccccgcttatcctagCGGAGACCTTGTTCAATTCTAGCTAAGTATGATGAGGAATTA---GGCAGTCGAGCGTCCACTTCCTGCCGTCTTAAGCATGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACTAAGCTTCGACTACCAGCCCAATCGCTAAGTTTAATGGGCCCCAGACTTAGTACCCAGTATCTTAGTCCTGAAGAGATGgtgagtcagtgggttatggtcatcaatacagtcctgttcacaccccctag Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG tgaggctaatcagtctgtgagaacaagcttgtgtcccccgcttatcctagCGGAGACCTTGTTCAATTCTAGCTAAGTATGATGAGGAATTAGGCAGTCGAGCGTCCACTTCCTGCCGTCTTAAGCATGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACTAAGCTTCGACTACCAGCCCAATCGCTAAGTTTAATGGGCCCCAGACTTAGTACCCAGTATCTTAGTCCTGAAGAGATGgtgagtcagtgggttatggtcatcaatacagtcctgttcacaccccctag Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACT-GGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG tgaggctaatcagtctgtgagaacaagcttgtgtcccccgcttatcctagCGGAGACCTTGTTCAATTCTAGCTAAGTATGATGAGGAATTAGGCAGTCGAGCGTCCAC-TTCCTGCCGTCTTAAGCATGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACTAAGCTTCGACTACCAGCCCAATCGCTAAGTTTAATGGGCCCCAGACTTAGTACCCAGTATCTTAGTCCTGAAGAGATGgtgagtcagtgggttatggtcatcaatacagtcctgttcacaccccctag Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACT-GGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG tgaggctaatcagtctgtgagaacaagcttgtgtcccccgcttatcctagCGGAGACCTTGTTCAATTCTAGCTAAGTATGATGAGGAATTAGGCAGTCGAGCGTCCAC-TTCCTGCCGTCTTAAGCATGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACTAAGCTTCGACTACCAGCCCAATCGCTAAGTTTAATGGGCCCCAGACTTAGTACCCAGTATCTTAGTCCTGAAGAGATGgtgagtcagtgggttatggtcatcaatacagtcctgttcacaccccctag Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG tgaggctaatcagtctgtgagaacaagcttgtgtcccccgcttatcctagCGGAGACCTTGTTCAATTCTAGCTAAGTATGATGAGGAATTAGGCAGTCGAGCGTCCACTTCCTGCCGTCTTAAGCATGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACTAAGCTTCGACTACCAGCCCAATCGCTAAGTTTAATGGGCCCCAGACTTAGTACCCAGTATCTTAGTCCTGAAGAGATGgtgagtcagtgggttatggtcatcaatacagtcctgttcacaccccctag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG tgaggctaatcagtctgtgagaacaagcttgtgtcccccgcttatcctagCGGAGACCTTGTTCAATTCTAGCTAAGTATGATGAGGAATTAGGCAGTCGAGCGTCCACTTCCTGCCGTCTTAAGCATGGTGGGATGGCTGATGGTCTAAGGGAGAAAGAGTTAGAAGAAATTCGCACTAAGCTTCGACTACCAGCCCAATCGCTAAGTTTAATGGGCCCCAGACTTAGTACCCAGTATCTTAGTCCTGAAGAGATGgtgagtcagtgggttatggtcatcaatacagtcctgttcacaccccctag #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCG-GACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccagctaccctgtctcttaacttaaacaggtGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAAGAACGCGCTCGATCGAA-TGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtgagcctaatcagtctgtgagaacaagcctaggtctcttttctcttaca Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccagctaccctgtctcttaacttaaacaggtGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAAGAACGCGCTCGATCGAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtgagcctaatcagtctgtgagaacaagcttgtgtcccccgcttatccta Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccagctaccctgtctcttaacttaaacagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAAGAACGCGCTCGATCGAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtgagcctaatcagtctgtgagaacaagcctaggtctcttttctcttaca Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccagctaccctgtctcttaacttaaacagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAAGAACGCGCTCGATCGAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtgagcctaatcagtctgtgagaacaagcctaggtctcttttctcttaca Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAAC--------------GTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccagctaccctgtctcttaacttaaacagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACA--------------AAGAACGCGCTCGATCGAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtgagcctaatcagtctgtgagaacaagcctaggtctcttttctcttaca Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccagctaccctgtctcttaacttaaacagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAAGAACGCGCTCGATCGAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtgagcctaatcagtctgtgagaacaagcctaggtctcttttctcttaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggctgaagattactgggactgccagctaccctgtctcttaacttaaacagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAAGAACGCGCTCGATCGAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtgagcctaatcagtctgtgagaacaagcctaggtctcttttctcttaca #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCT-TTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTCTTTC-AGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAggtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTCTTTCAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAggtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTCTTTCAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTCTTTCAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTCTTTCAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTCTTTCAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTCTTTCAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGAC-CCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagtAAAGTTAAAACTCTGGGAGAAGATGACCCCCTGGCTGG-CGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagtAAAGTTAAAACTCTGGGAGAAGATGACCCCCTGGCTGGCGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCCTGGCTGGCGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCCTGGCTGGCGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGA-CCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCCTGGCTGG-CGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCCTGGCTGGCGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCCTGGCTGGCGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGA-AACCTCCAAAGGAAAAAG tgttaaagttgtcagtgatgagtaaccaccaagtctcttttcctttgtagggCCTCAGGACTCATGGAAAGTTACACCTGCCTCTGAGGGCCAATC-TCAAAGGAAGAAAgtaagtgcctttccataaccattagcctagtccatccctatgttcttact Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG tgttaaagttgtcagtgatgagtaaccaccaagtctcttttcctttgtagggCCTCAGGACTCATGGAAAGTTACACCTGCCTCTGAGGGCCAATCTCAAAGGAAGAAAgtaagtgcctttccataaccattagcctagtccatccctatgttcttact Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG tgttaaagttgtcagtgatgagtaaccaccaagtctcttttcctttgtagGGCCTCAGGACTCATGGAAAGTTACACCTGCCTCTGAGGGCCAATCTCAAAGGAAGAAAgtaagtgcctttccataaccattagcctagtccatccctatgttcttact Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG tgttaaagttgtcagtgatgagtaaccaccaagtctcttttcctttgtagGGCCTCAGGACTCATGGAAAGTTACACCTGCCTCTGAGGGCCAATCTCAAAGGAAGAAAgtaagtgcctttccataaccattagcctagtccatccctatgttcttact Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG tgttaaagttgtcagtgatgagtaaccaccaagtctcttttcctttgtagGGCCTCAGGACTCATGGAAAGTTACACCTGCCTCTGAGGGCCAATCTCAAAGGAAGAAAgtaagtgcctttccataaccattagcctagtccatccctatgttcttact Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG tgttaaagttgtcagtgatgagtaaccaccaagtctcttttcctttgtagGGCCTCAGGACTCATGGAAAGTTACACCTGCCTCTGAGGGCCAATCTCAAAGGAAGAAAgtaagtgcctttccataaccattagcctagtccatccctatgttcttact Alignment from Exonerate_coding2genome tgttaaagttgtcagtgatgagtaaccaccaagtctcttttcctttgtagggcctcaggactcatggaaagttacacctgcctctgagggccaatctcaaaggaagaaagtaagtgcctttccataaccattagcctagtccatccctatgttcttact Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG tgttaaagttgtcagtgatgagtaaccaccaagtctcttttcctttgtagGGCCTCAGGACTCATGGAAAGTTACACCTGCCTCTGAGGGCCAATCTCAAAGGAAGAAAgtaagtgcctttccataaccattagcctagtccatccctatgttcttact #### Sec31b_ID9038_14 --> 2 - 0 Original Alignment acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGT-TTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagcattgactgagtgagtgtctctctgttttgcctatgtagatACTGATGGGCTCCTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTCTTGAAGGAGG-GCGATTTGCAGATGCTGTTATTTTGGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaagtcctgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from CESAR acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagcattgactgagtgagtgtctctctgttttgcctatgtagatACTGATGGGCTCCTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTCTTGAAGGAGGGCGATTTGCAGATGCTGTTATTTTGGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaagtcctgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Spaln_aa2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagcattgactgagtgagtgtctctctgttttgcctatgtagATACTGATGGGCTCCTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTCTTGAAGGAGGGCGATTTGCAGATGCTGTTATTTTGGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaagtcctgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Spaln_nt2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGT-TTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagcattgactgagtgagtgtctctctgttttgcctatgtagATACTGATGGGCTCCTAAGCC---CTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTCTTGAAGGAGG-GCGATTTGCAGATGCTGTTATTTTGGCTCA---TGGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaagtcctgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Pairagon ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGT-TTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagcattgactgagtgagtgtctctctgttttgcctatgtagATACTGATGGGCTCCTAAGCC---CTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTCTTGAAGGAGG-GCGATTTGCAGATGCTGTTATTTTGGCTCA---TGGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaagtcctgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Exonerate_protein2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagcattgactgagtgagtgtctctctgttttgcctatgtagATACTGATGGGCTCCTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTCTTGAAGGAGGGCGATTTGCAGATGCTGTTATTTTGGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaagtcctgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Exonerate_coding2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagcattgactgagtgagtgtctctctgttttgcctatgtagATACTGATGGGCTCCTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTCTTGAAGGAGGGCGATTTGCAGATGCTGTTATTTTGGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaagtcctgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from GeneWise ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagcattgactgagtgagtgtctctctgttttgcctatgtagATACTGATGGGCTCCTAAGCCCT---TTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTCTTGAAGGAGGGCGATTTGCAGATGCTGTTATTTTGGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaagtcctgttgtccataattgtgttgctcacagccatgtcattcaaca #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCC---TTCTTTGATGAGCTGATACCTCAGAACATGACTCCC-TGGGAGATCCCCACCACAGAAg ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCCTGGGTGA-CCCCACAACAGAGggtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCCTGGGTGACCCCACAACAGAGggtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCCTGGGTGACCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCT---CAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCC-TGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCCTGGGTGA-CCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Pairagon GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCT---CAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCCTGGGTGACCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCCTGGGTGACCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCCTGGGTGACCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCC---TTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCCTGGGTGACCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCC-CAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCCAGC-TATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCCAGCTATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCCAGCTATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGC-CCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCCAGC-TATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAA ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAgtgccagctatgagatcacctgacgaggtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCCAGCTATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCCAGCTATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCCAGCTATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAG-GGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg tgtcctaaacctgctctcacctaacctgtagtaatatgttgctttctcagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGCGGAAAAGAGG-ATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTggtgagaaaaatgtaaccaatccatcacaattctaagccctgaacattgtt Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg agccctaaacctgctctcacctaacctgtagtaatatgttgctttctcagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGCGGAAAAGAGGATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTggtgagaaaaatgtaaccaatccatcacaattctaagccctgaacattgtt Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctaaacctgctctcacctaacctgtagtaatatgttgctttctcagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGCGGAAAAGAGGATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtgagaaaaatgtaaccaatccatcacaattctaagccctgaacattgtt Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctaaacctgctctcacctaacctgtagtaatatgttgctttctcagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGCGGAAAAGAGGATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtgagaaaaatgtaaccaatccatcacaattctaagccctgaacattgtt Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAG-GGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctaaacctgctctcacctaacctgtagtaatatgttgctttctcagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGCGGAAAAGAG-GATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtgagaaaaatgtaaccaatccatcacaattctaagccctgaacattgtt Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctaaacctgctctcacctaacctgtagtaatatgttgctttctcagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGCGGAAAAGAGGATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtgagaaaaatgtaaccaatccatcacaattctaagccctgaacattgtt Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctaaacctgctctcacctaacctgtagtaatatgttgctttctcagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGCGGAAAAGAGGATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtgagaaaaatgtaaccaatccatcacaattctaagccctgaacattgtt Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG tgtcctaaacctgctctcacctaacctgtagtaatatgttgctttctcagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGCGGAAAAGAGGATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtgagaaaaatgtaaccaatccatcacaattctaagccctgaacattgtt #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCAC-CCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg tcctagtagggcagcatgtcctatctcctcattatgtactctaattacagatGGTGGCCTGTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCCACACTCTC-GAGAACTGAGGAAGCACCGATGCACTGGCTCAATggtgagcatcaggtgctttcaaggggttggttaaggggacagctctagtgt Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg tcctagtagggcagcatgtcctatctcctcattatgtactctaattacagatGGTGGCCTGTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCCACACTCTCGAGAACTGAGGAAGCACCGATGCACTGGCTCAATggtgagcatcaggtgctttcaaggggttggttaaggggacagctctagtgt Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tcctagtagggcagcatgtcctatctcctcattatgtactctaattacagATGGTGGCCTGTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCCACACTCTCGAGAACTGAGGAAGCACCGATGCACTGGCTCAATGgtgagcatcaggtgctttcaaggggttggttaaggggacagctctagtgt Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCC-ACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tcctagtagggcagcatgtcctatctcctcattatgtactctaattacagATGGTGGCCTGTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCCACACTCTC-GAGAACTGAGGAAGCACCGATGCACTGGCTCAATGgtgagcatcaggtgctttcaaggggttggttaaggggacagctctagtgt Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCA-CCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tcctagtagggcagcatgtcctatctcctcattatgtactctaattacagATGGTGGCCTGTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCCACACTCTC-GAGAACTGAGGAAGCACCGATGCACTGGCTCAATGgtgagcatcaggtgctttcaaggggttggttaaggggacagctctagtgt Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tcctagtagggcagcatgtcctatctcctcattatgtactctaattacagATGGTGGCCTGTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCCACACTCTCGAGAACTGAGGAAGCACCGATGCACTGGCTCAATGgtgagcatcaggtgctttcaaggggttggttaaggggacagctctagtgt Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tcctagtagggcagcatgtcctatctcctcattatgtactctaattacagATGGTGGCCTGTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCCACACTCTCGAGAACTGAGGAAGCACCGATGCACTGGCTCAATGgtgagcatcaggtgctttcaaggggttggttaaggggacagctctagtgt Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tcctagtagggcagcatgtcctatctcctcattatgtactctaattacagATGGTGGCCTGTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCCACACTCTCGAGAACTGAGGAAGCACCGATGCACTGGCTCAATGgtgagcatcaggtgctttcaaggggttggttaaggggacagctctagtgt #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGG-ACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGCGAATCCT-CCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGtggtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGCGAATCCTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGtggtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGCGAATCCTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Spaln_nt2Genome GGAGATCTGGGAGG-GAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAA-ATTTTACAGAAGAAGTGGCGAATCCTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGCGAATCCTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGCGAATCCTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGCGAATCCTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGCGAATCCTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGC-CGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG catatgcgcaggttgaggggatcagaaccccacccttgtgctgataccaggAAAACACTGGAGGCGTCAGATATATGCCCGGCATG-CTTGGCAGAGATTCATGCCGTTTTC---AGCCCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGGGGTGGAGTACATCAACCCCAACCGGGCTTAgtaagtacttaaagtttggatcacactaatttttagaaataagttatgtg Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG catatgcgcaggttgaggggatcagaaccccacccttgtgctgataccaggAAAACACTGGAGGCGTCAGATATATGCCCGGCATGCTTGGCAGAGATTCATGCCGTTTTC---AGCCCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGGGGTGGAGTACATCAACCCCAACCGGGCTTAgtaagtacttaaagtttggatcacactaatttttagaaataagttatgtg Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG catatgcgcaggttgaggggatcagaaccccacccttgtgctgataccagGAAAACACTGGAGGCGTCAGATATATGCCCGGCATGCTTGGCAGAGATTCATGCCGTTTTCAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGGGGTGGAGTACATCAACCCCAACCGGGCTTAgtaagtacttaaagtttggatcacactaatttttagaaataagttatgtg Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCC-GCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG catatgcgcaggttgaggggatcagaaccccacccttgtgctgataccagGAAAACACTGGAGGCGTCAGATATATGCCCGGCATG-CTTGGCAGAGATTCATGCCGTTTTCA---GCCCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGGGGTGGAGTACATCAACCCCAACCGGGCTTAgtaagtacttaaagtttggatcacactaatttttagaaataagttatgtg Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCC------GCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG catatgcgcaggttgaggggatcagaaccccacccttgtgctgataccagGAAAACACTGGAGGCGTCAGATATATGCCCGGCATGCT------TGGCAGAGATTCATGCCGTTTTCA---GCCCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGGGGTGGAGTACATCAACCCCAACCGGGCTTAgtaagtacttaaagtttggatcacactaatttttagaaataagttatgtg Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG catatgcgcaggttgaggggatcagaaccccacccttgtgctgataccagGAAAACACTGGAGGCGTCAGATATATGCCCGGCATGCTTGGCAGAGATTCATGCCGTTTTCAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGGGGTGGAGTACATCAACCCCAACCGGGCTTAgtaagtacttaaagtttggatcacactaatttttagaaataagttatgtg Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG catatgcgcaggttgaggggatcagaaccccacccttgtgctgataccagGAAAACACTGGAGGCGTCAGATATATGCCCGGCATGCTTGGCAGAGATTCATGCCGTTTTCAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGGGGTGGAGTACATCAACCCCAACCGGGCTTAgtaagtacttaaagtttggatcacactaatttttagaaataagttatgtg Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG catatgcgcaggttgaggggatcagaaccccacccttgtgctgataccagGAAAACACTGGAGGCGTCAGATATATGCCCGGCATGCTTGGCAGAGATTCATGCCGTTTTCAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGCTGGGGGTGTTATGGGGGTGGAGTACATCAACCCCAACCGGGCTTAgtaagtacttaaagtttggatcacactaatttttagaaataagttatgtg #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATA-CAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtccaaccaccacctaatgaaagagtcgaacttgctctgtatgtcttcagcaGATGGCTGGAATCATAAAGCTGTAGTCCAAGGCTCTGGCATGCACATCATTGAAGAGATACCAAGTGGTCA-AGAGCCCCAGTCAGTAGACAATTTACTGATCTCACCAATGCAAgtgagttactgttactatggtaagaagccccacttatttacccacaacta Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtccaaccaccacctaatgaaagagtcgaacttgctctgtatgtcttcagcaGATGGCTGGAATCATAAAGCTGTAGTCCAAGGCTCTGGCATGCACATCATTGAAGAGATACCAAGTGGTCAAGAGCCCCAGTCAGTAGACAATTTACTGATCTCACCAATGCAAgtgagttactgttactatggtaagaagccccacttatttacccacaacta Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtccaaccaccacctaatgaaagagtcgaacttgctctgtatgtcttcagCAGATGGCTGGAATCATAAAGCTGTAGTCCAAGGCTCTGGCATGCACATCATTGAAGAGATACCAAGTGGTCAAGAGCCCCAGTCAGTAGACAATTTACTGATCTCACCAATGCAAgtgagttactgttactatggtaagaagccccacttatttacccacaacta Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATAC-AAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtccaaccaccacctaatgaaagagtcgaacttgctctgtatgtcttcagCAGATGGCTGGAATCATAAAGCTGTAGTCCAAGGCTCTGGCATGCACATCATTGAAGAGATACCAAGTGGTCA-AGAGCCCCAGTCAGTAGACAATTTACTGATCTCACCAATGCAAgtgagttactgttactatggtaagaagccccacttatttacccacaacta Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATA-CAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtccaaccaccacctaatgaaagagtcgaacttgctctgtatgtcttcagCAGATGGCTGGAATCATAAAGCTGTAGTCCAAGGCTCTGGCATGCACATCATTGAAGAGATACCAAGTGGTCA-AGAGCCCCAGTCAGTAGACAATTTACTGATCTCACCAATGCAAgtgagttactgttactatggtaagaagccccacttatttacccacaacta Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtccaaccaccacctaatgaaagagtcgaacttgctctgtatgtcttcagCAGATGGCTGGAATCATAAAGCTGTAGTCCAAGGCTCTGGCATGCACATCATTGAAGAGATACCAAGTGGTCAAGAGCCCCAGTCAGTAGACAATTTACTGATCTCACCAATGCAAgtgagttactgttactatggtaagaagccccacttatttacccacaacta Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtccaaccaccacctaatgaaagagtcgaacttgctctgtatgtcttcagCAGATGGCTGGAATCATAAAGCTGTAGTCCAAGGCTCTGGCATGCACATCATTGAAGAGATACCAAGTGGTCAAGAGCCCCAGTCAGTAGACAATTTACTGATCTCACCAATGCAAgtgagttactgttactatggtaagaagccccacttatttacccacaacta Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtccaaccaccacctaatgaaagagtcgaacttgctctgtatgtcttcagCAGATGGCTGGAATCATAAAGCTGTAGTCCAAGGCTCTGGCATGCACATCATTGAAGAGATACCAAGTGGTCAAGAGCCCCAGTCAGTAGACAATTTACTGATCTCACCAATGCAAgtgagttactgttactatggtaagaagccccacttatttacccacaacta #### Sema4g_ID9255_13 --> 1 - 1 Original Alignment gACAGAATTGATACAGGACATA-GAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagaACAGAACTAATACAAGACATTCGAAA-AGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTggtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from CESAR gACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagaACAGAACTAATACAAGACATTCGAAAAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTggtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Spaln_aa2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTCGAAAAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Spaln_nt2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTCGAAAAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Pairagon GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTCGAAAAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Exonerate_protein2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTCGAAAAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Exonerate_coding2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTCGAAAAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from GeneWise GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTCGAAAAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTA-CGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACCACAAGA-GCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAA---GCGcagtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACCACAAGAGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCGcagtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACCACAAGAGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACCACAAGAGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATG---------------------ATAATAG agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACCACAAGAGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAGTAATATTGAATGTTGAAGAAAAGgcatgggcaggtatcagttttaacgg Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACCACAAGAGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACCACAAGAGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGAT-- agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACCACAAGAGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGT-ACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aagtctcagatgccctcctattgatttccgctgtccactcttgttctcagacCAGTATCAAGGGAGTCACACCAG-GGCCTCTGGAGTTTATCGTCTGCATCAAGGAAAGggtaagactattaccttttatggcatctctcatgattggggccaaatggca Alignment from CESAR atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aagtctcagatgccctcctattgatttccgctgtccactcttgttctcagacCAGTATCAAGGGAGTCACACCAGGGCCTCTGGAGTTTATCGTCTGCATCAAGGAAAGggtaagactattaccttttatggcatctctcatgattggggccaaatggca Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtctcagatgccctcctattgatttccgctgtccactcttgttctcagACCAGTATCAAGGGAGTCACACCAGGGCCTCTGGAGTTTATCGTCTGCATCAAGGAAAGGgtaagactattaccttttatggcatctctcatgattggggccaaatggca Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGT-ACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtctcagatgccctcctattgatttccgctgtccactcttgttctcagACCAGTATCAAGGGAGTCACACCAG-GGCCTCTGGAGTTTATCGTCTGCATCAAGGAAAGGgtaagactattaccttttatggcatctctcatgattggggccaaatggca Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtctcagatgccctcctattgatttccgctgtccactcttgttctcagaccagtatcaagggagtcacaccag-------------------------GGCCTCTGGAGTTTATCGTCTGCATCAAGGAAAGGgtaagactattaccttttatggcatctctcatgattggggccaaatggca Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtctcagatgccctcctattgatttccgctgtccactcttgttctcagACCAGTATCAAGGGAGTCACACCAGGGCCTCTGGAGTTTATCGTCTGCATCAAGGAAAGGgtaagactattaccttttatggcatctctcatgattggggccaaatggca Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtctcagatgccctcctattgatttccgctgtccactcttgttctcagACCAGTATCAAGGGAGTCACACCAGGGCCTCTGGAGTTTATCGTCTGCATCAAGGAAAGGgtaagactattaccttttatggcatctctcatgattggggccaaatggca Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtctcagatgccctcctattgatttccgctgtccactcttgttctcagACCAGTATCAAGGGAGTCACACCAGGGCCTCTGGAGTTTATCGTCTGCATCAAGGAAAGGgtaagactattaccttttatggcatctctcatgattggggccaaatggca #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACT-GGCTTCATCACACCTGCAGACag gccagtttcagcaactcacctccctgaaatcatcctgttgtcctcatcagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTCGGCT-CATCACACCTGCAGATaggtgagtactaggctgtccctcatcagtgacctacctggcactgtggtgat Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagtttcagcaactcacctccctgaaatcatcctgttgtcctcatcagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTCGGCTCATCACACCTGCAGATaggtgagtactaggctgtccctcatcagtgacctacctggcactgtggtgat Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcacctccctgaaatcatcctgttgtcctcatcagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTCGGCTCATCACACCTGCAGATAGgtgagtactaggctgtccctcatcagtgacctacctggcactgtggtgat Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcacctccctgaaatcatcctgttgtcctcatcagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTCGGCTCATCACACCTGCAGATAGgtgagtactaggctgtccctcatcagtgacctacctggcactgtggtgat Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcacctccctgaaatcatcctgttgtcctcatcagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTCGGCTCATCACACCTGCAGATAGgtgagtactaggctgtccctcatcagtgacctacctggcactgtggtgat Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcacctccctgaaatcatcctgttgtcctcatcagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTCGGCTCATCACACCTGCAGATAGgtgagtactaggctgtccctcatcagtgacctacctggcactgtggtgat Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcacctccctgaaatcatcctgttgtcctcatcagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTCGGCTCATCACACCTGCAGATAGgtgagtactaggctgtccctcatcagtgacctacctggcactgtggtgat Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagtttcagcaactcacctccctgaaatcatcctgttgtcctcatcagGCCAAAACAGAAAAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTCGGCTCATCACACCTGCAGATAGgtgagtactaggctgtccctcatcagtgacctacctggcactgtggtgat #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACCTATCGCGAA-GAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACCTATCGCGAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACCTATCGCGAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACCTATCGCGAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACCTATCGCGAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACCTATCGCGAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACCTATCGCGAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACCTATCGCGAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCC-CGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG gagcttcttacattctaaacacaaacccctcttctttcaatttctcacagAAAAACCTACAACATCAAAACCAGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATCGAGAAAAAGACTCTGGTCAATCTCGAAGGGT-AGGGCCGCCAACAGGA---ATAGAGATTAAGTATGTGAGTGAGGACCCTGAGATCCATGAGCCCAATTTCATCTTCTTCAAAAGGGTGTATGAGGCTTTTAAGgtaagttggctcatgccccttctgaggactttacaggttgaggcacagac Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG gagcttcttacattctaaacacaaacccctcttctttcaatttctcacagAAAAACCTACAACATCAAAACCAGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATCGAGAAAAAGACTCTGGTCAATCTCGAAGGGTAGGGCCGCCAACAGGA---ATAGAGATTAAGTATGTGAGTGAGGACCCTGAGATCCATGAGCCCAATTTCATCTTCTTCAAAAGGGTGTATGAGGCTTTTAAGgtaagttggctcatgccccttctgaggactttacaggttgaggcacagac Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG gagcttcttacattctaaacacaaacccctcttctttcaatttctcacagAAAAACCTACAACATCAAAACCAGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATCGAGAAAAAGACTCTGGTCAATCTCGAAGGGTAGGGCCGCCAACAGGA---ATAGAGATTAAGTATGTGAGTGAGGACCCTGAGATCCATGAGCCCAATTTCATCTTCTTCAAAAGGGTGTATGAGGCTTTTAAGgtaagttggctcatgccccttctgaggactttacaggttgaggcacagac Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGC-GGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG gagcttcttacattctaaacacaaacccctcttctttcaatttctcacagAAAAACCTACAACATCAAAACCAGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATCGAGAAAAAGACTCTGGTCAATCTCGAAGGGTAGGGCCGC----CAACAGGAATAGAGATTAAGTATGTGAGTGAGGACCCTGAGATCCATGAGCCCAATTTCATCTTCTTCAAAAGGGTGTATGAGGCTTTTAAGgtaagttggctcatgccccttctgaggactttacaggttgaggcacagac Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTC--------------------------------GGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG gagcttcttacattctaaacacaaacccctcttctttcaatttctcacagAAAAACCTACAACATCAAAACCAGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATCGAGAAAAAGACTCTGGTCAATCTCGAAGGGTAGGGCCGCCAACAGGAATAG-----------------------------------AGATTAAGTATGTGAGTGAGGACCCTGAGATCCATGAGCCCAATTTCATCTTCTTCAAAAGGGTGTATGAGGCTTTTAAGgtaagttggctcatgccccttctgaggactttacaggttgaggcacagac Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG gagcttcttacattctaaacacaaacccctcttctttcaatttctcacagAAAAACCTACAACATCAAAACCAGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATCGAGAAAAAGACTCTGGTCAATCTCGAAGGGTAGGGCCGCCAACAGGA---ATAGAGATTAAGTATGTGAGTGAGGACCCTGAGATCCATGAGCCCAATTTCATCTTCTTCAAAAGGGTGTATGAGGCTTTTAAGgtaagttggctcatgccccttctgaggactttacaggttgaggcacagac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG gagcttcttacattctaaacacaaacccctcttctttcaatttctcacagAAAAACCTACAACATCAAAACCAGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATCGAGAAAAAGACTCTGGTCAATCTCGAAGGGTAGGGCCGCCAACAGGA---ATAGAGATTAAGTATGTGAGTGAGGACCCTGAGATCCATGAGCCCAATTTCATCTTCTTCAAAAGGGTGTATGAGGCTTTTAAGgtaagttggctcatgccccttctgaggactttacaggttgaggcacagac #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAG-TCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagaaAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCACTCGGCAT-TGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagaaAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCACTCGGCATTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttgtggttaattgtggccaaactagtctccctccccttca gAAAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCACTCGGCATTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagAAAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCACTCGGCATTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Pairagon AAATGGAGACAGATACTCGCTCATCTCTGGGA-CAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagaaaaagcagAAATGGAGACAGTCACTCGCTCATCTCTGGGACCACTCGGCATT-GAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagAAAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCACTCGGCATTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Exonerate_coding2genome tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagaaaaagcagaaatggagacagtcactcgctcatctctgggaccactcggcattgagactgaggaagacacagtatccatatctaaaatagaggtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from GeneWise --GAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagaaaaagCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCACTCGGCATTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTG-AAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg tttttgcaacgggataagtttcagaccgaagttgattattcccatttcagATT---GATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGCTGCAAGGAGAGTC-GCAGCAAGAGATGAACTCTCAG---ggtaggtttaacagttaaacacacattagctgggagctgttgctttcacca Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg tttttgcaacgggataagtttcagaccgaagttgattattcccatttcagATT---GATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGCTGCAAGGAGAGTCGCAGCAAGAGATGAACTCT---CAGggtaggtttaacagttaaacacacattagctgggagctgttgctttcacca Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- tttttgcaacgggataagtttcagaccgaagttgattattcccatttcagATT---GATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGCTGCAAGGAGAGTCGCAGCAAGAGATGAACTCTCAGGgtaggtttaacagttaaacacacattagctgggagctgttgctttcacca Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG tttttgcaacgggataagtttcagaccgaagttgattattcccatttcagAT---TGATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGCTGCAAGGAGAGTCGCAGCAAGAGATGAACTCT---CAGGgtaggtttaacagttaaacacacattagctgggagctgttgctttcacca Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTG-AAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGGAGGAGGAGG tttttgcaacgggataagtttcagaccgaagttgattattcccatttcagAT---TGATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGCTGCAAGGAGAGTC-GCAGCAAGAGATGAACTCTC------------AGGgtaggtttaacagttaaacacacattagctgggagctgttgctttcacca Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG tttttgcaacgggataagtttcagaccgaagttgattattcccatttcagATT---GATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGCTGCAAGGAGAGTCGCAGCAAGAGATGAACTCT---CAGGgtaggtttaacagttaaacacacattagctgggagctgttgctttcacca Alignment from Exonerate_coding2genome tttttgcaacgggataagtttcagaccgaagttgattattcccatttcagattgatccctcagtgggccccaaaattcctcaggctgtggaaaaaatccttcagctgcaaggagagtcgcagcaagagatgaactctcagggtaggtttaacagttaaacacacattagctgggagctgttgctttcacca Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGGAGGAGGAG- tttttgcaacgggataagtttcagaccgaagttgattattcccatttcagATTGAT---CCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGCTGCAAGGAGAGTCGCAGCAAGAGATGAACTCTCAGGGTAGGTTTAACAgttaaacacacattagctgggagctgttgctttcacca #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTG-GTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagaAAGACTCCCACTGTGCGTGTTTTGGC-GTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCaggtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from CESAR gAAGACTCCGACTGTG-GTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagaAAGACTCCCACTGTGCGTGTTTTGG-CGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCaggtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGCGTGTTTTGGCGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Spaln_nt2Genome GAAGACTCCGACTGTG-GTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGCGTGTTTTGGC-GTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Pairagon GAAGACTCCGACTGTG-GTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGCGTGTTTTGGC-GTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGCGTGTTTTGGCGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Exonerate_coding2genome ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagaaagactcccactgtgcgtgttttggcgtgggtgaataaatcatttaatgctattattaactactctaatcggagtggagatgcccctatcactgtcaggtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGCGTGTTTTGGCGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt #### Sfxn3_ID9291_9 --> 1 - 2 Original Alignment cTTGGTATTTGCCACA-CCCCTGTGCTGCGCTCTGTTCCCTCAGAGAag actgtttaggaagccatgctttcacaaactttttctctccgtggctctagcCTGGTATTCGCCACCCCCCCTGT-TTGTGCCTTGTTTCCACAGAGAgcgtaagtgagtgataccaacctagttgcattgtctgaataagttgtatgtt Alignment from CESAR cTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAag actgtttaggaagccatgctttcacaaactttttctctccgtggctctagcCTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCACAGAGAgcgtaagtgagtgataccaacctagttgcattgtctgaataagttgtatgtt Alignment from Spaln_aa2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actgtttaggaagccatgctttcacaaactttttctctccgtggctctagCCTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCACAGAGAGCgtaagtgagtgataccaacctagttgcattgtctgaataagttgtatgtt Alignment from Spaln_nt2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actgtttaggaagccatgctttcacaaactttttctctccgtggctctagCCTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCACAGAGAGCgtaagtgagtgataccaacctagttgcattgtctgaataagttgtatgtt Alignment from Pairagon CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actgtttaggaagccatgctttcacaaactttttctctccgtggctctagCCTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCACAGAGAGCgtaagtgagtgataccaacctagttgcattgtctgaataagttgtatgtt Alignment from Exonerate_protein2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actgtttaggaagccatgctttcacaaactttttctctccgtggctctagCCTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCACAGAGAGCgtaagtgagtgataccaacctagttgcattgtctgaataagttgtatgtt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actgtttaggaagccatgctttcacaaactttttctctccgtggctctagCCTGGTATTCGCCACCCCCCCTGTTTGTGCCTTGTTTCCACAGAGAGCgtaagtgagtgataccaacctagttgcattgtctgaataagttgtatgtt #### Shoc2_ID11421_7 --> 0 - 1 Original Alignment AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATC-GGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATACGGCC-CCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTggtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from CESAR AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATACGGCCCCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTggtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Spaln_aa2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATACGGCCCCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Spaln_nt2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATACGGCCCCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Pairagon AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATACGGCCCCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Exonerate_protein2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATACGGCCCCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Exonerate_coding2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATACGGCCCCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from GeneWise AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATACGGCCCCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTA-GAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttaattttctgttgggtgtggcatcctccacccctgcctgcccatctaggCCA---CCTGGGAGCCTATCAGGAAAGGTGTCTCATCTACGAGTCCATGC-CTGGAAATTGCAAGAGGATCTGCAGCGAgtatgttgccaacctggaggaaagggtttacaaggctgccatgggacatg Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttaattttctgttgggtgtggcatcctccacccctgcctgcccatctaggCCA---CCTGGGAGCCTATCAGGAAAGGTGTCTCATCTACGAGTCCATGCCTGGAAATTGCAAGAGGATCTGCAGCGAgtatgttgccaacctggaggaaagggtttacaaggctgccatgggacatg Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttaattttctgttgggtgtggcatcctccacccctgcctgcccatctagGCCA---CCTGGGAGCCTATCAGGAAAGGTGTCTCATCTACGAGTCCATGCCTGGAAATTGCAAGAGGATCTGCAGCGAgtatgttgccaacctggaggaaagggtttacaaggctgccatgggacatg Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTA-GAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttaattttctgttgggtgtggcatcctccacccctgcctgcccatctagGCC---ACCTGGGAGCCTATCAGGAAAGGTGTCTCATCTACGAGTCCATGC-CTGGAAATTGCAAGAGGATCTGCAGCGAgtatgttgccaacctggaggaaagggtttacaaggctgccatgggacatg Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTA-GAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttaattttctgttgggtgtggcatcctccacccctgcctgcccatctagGCC---ACCTGGGAGCCTATCAGGAAAGGTGTCTCATCTACGAGTCCATGC-CTGGAAATTGCAAGAGGATCTGCAGCGAgtatgttgccaacctggaggaaagggtttacaaggctgccatgggacatg Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttaattttctgttgggtgtggcatcctccacccctgcctgcccatctagGCCA---CCTGGGAGCCTATCAGGAAAGGTGTCTCATCTACGAGTCCATGCCTGGAAATTGCAAGAGGATCTGCAGCGAgtatgttgccaacctggaggaaagggtttacaaggctgccatgggacatg Alignment from Exonerate_coding2genome cttaattttctgttgggtgtggcatcctccacccctgcctgcccatctaggccacctgggagcctatcaggaaaggtgtctcatctacgagtccatgcctggaaattgcaagaggatctgcagcgagtatgttgccaacctggaggaaagggtttacaaggctgccatgggacatg Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cttaattttctgttgggtgtggcatcctccacccctgcctgcccatctagGCCA---CCTGGGAGCCTATCAGGAAAGGTGTCTCATCTACGAGTCCATGCCTGGAAATTGCAAGAGGATCTGCAGCGAgtatgttgccaacctggaggaaagggtttacaaggctgccatgggacatg #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment gaCAACCCATCTCAGAGAGCGGAGACCCC-AAGGAAGCTTTAAAGTGTGATTCTga ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagggCAATCAATCTCTGAAAGTGGTGATCTCCAAGGAGGCTT-AAAGTGTGATTCTgagtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from CESAR gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagggCAATCAATCTCTGAAAGTGGTGATCTCCAAGGAGGCTTAAAGTGTGATTCTgagtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Spaln_aa2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCCAAGGAGGCTTAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Spaln_nt2Genome GACAACCCATCTCAGAGAGCGGAGACC-CCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCCAAGGAGGC-TTAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Pairagon GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCCAAGGAGGCTTAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Exonerate_protein2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCCAAGGAGGCTTAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Exonerate_coding2genome ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagggcaatcaatctctgaaagtggtgatctccaaggaggcttaaagtgtgattctgagtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from GeneWise GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCCAAGGAGGCTTAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGC-AACACAATTCTGGAGTCACTGTCCCGGGAGg taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagttATGCCAGAAGCTGCCACTGAAACATTGGAT---GAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAA-CCTGGAGTCCCTGTCTCGGGAAggtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaat Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagttATGCCAGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAACCTGGAGTCCCTGTCTCGGGAAggtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaat Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAACCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaat Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATT---GGATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAACCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaat Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTG-CAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATT---GGATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAA-CCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaat Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAACCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaat Alignment from Exonerate_coding2genome taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagttatgccagaagctgccactgaaacattggatgaatggcagtccatatctgcaatttcctccacttgccaacacaacctggagtccctgtctcgggaaggtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaat Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAACCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaat #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTG-TCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tggagccttccacagcacacttgccaatgacgtgaacatctttccaacagcaGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCATGTGCTCCACGA-GTTGCCTTACACACCTAATAACCAGCAACAGgtatgttaagtatttgccaaaactaggaaaaactactgggaatcagtctc Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tggagccttccacagcacacttgccaatgacgtgaacatctttccaacagcaGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCATGTGCTCCACGAGTTGCCTTACACACCTAATAACCAGCAACAGgtatgttaagtatttgccaaaactaggaaaaactactgggaatcagtctc Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tggagccttccacagcacacttgccaatgacgtgaacatctttccaacagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCATGTGCTCCACGAGTTGCCTTACACACCTAATAACCAGCAACAGgtatgttaagtatttgccaaaactaggaaaaactactgggaatcagtctc Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tggagccttccacagcacacttgccaatgacgtgaacatctttccaacagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCATGTGCTCCACGAGTTGCCTTACACACCTAATAACCAGCAACAGgtatgttaagtatttgccaaaactaggaaaaactactgggaatcagtctc Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTG-TCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tggagccttccacagcacacttgccaatgacgtgaacatctttccaacagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCATGTGCTCCACGA-GTTGCCTTACACACCTAATAACCAGCAACAGgtatgttaagtatttgccaaaactaggaaaaactactgggaatcagtctc Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tggagccttccacagcacacttgccaatgacgtgaacatctttccaacagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCATGTGCTCCACGAGTTGCCTTACACACCTAATAACCAGCAACAGgtatgttaagtatttgccaaaactaggaaaaactactgggaatcagtctc Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tggagccttccacagcacacttgccaatgacgtgaacatctttccaacagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCATGTGCTCCACGAGTTGCCTTACACACCTAATAACCAGCAACAGgtatgttaagtatttgccaaaactaggaaaaactactgggaatcagtctc Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tggagccttccacagcacacttgccaatgacgtgaacatctttccaacagCAGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCATGTGCTCCACGAGTTGCCTTACACACCTAATAACCAGCAACAGgtatgttaagtatttgccaaaactaggaaaaactactgggaatcagtctc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAG-AAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagagggattacaacaaaccaggaacagatatgtgccttctttgtgcagaaCATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAACAAGCAGG-CAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtcagtacatagtgaacaggcaatctgcaaaatgagaagatatacaagaa Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagagggattacaacaaaccaggaacagatatgtgccttctttgtgcagaaCATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAACAAGCAGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtcagtacatagtgaacaggcaatctgcaaaatgagaagatatacaagaa Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagagggattacaacaaaccaggaacagatatgtgccttctttgtgcagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAACAAGCAGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtcagtacatagtgaacaggcaatctgcaaaatgagaagatatacaagaa Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagagggattacaacaaaccaggaacagatatgtgccttctttgtgcagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAACAAGCAGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtcagtacatagtgaacaggcaatctgcaaaatgagaagatatacaagaa Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagagggattacaacaaaccaggaacagatatgtgccttctttgtgcagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAACAAGCAGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtcagtacatagtgaacaggcaatctgcaaaatgagaagatatacaagaa Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagagggattacaacaaaccaggaacagatatgtgccttctttgtgcagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAACAAGCAGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtcagtacatagtgaacaggcaatctgcaaaatgagaagatatacaagaa Alignment from Exonerate_coding2genome caagagggattacaacaaaccaggaacagatatgtgccttctttgtgcagaacatcaaaacttctttggactagatgaggcactaggtccagtggctttgagtctccaacgggaggaacaagcaggcagtcgaggggcccccttacacagctttcaagtcattgtgcgaacaatgcaggtcagtacatagtgaacaggcaatctgcaaaatgagaagatatacaagaa Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagagggattacaacaaaccaggaacagatatgtgccttctttgtgcagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAACAAGCAGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtcagtacatagtgaacaggcaatctgcaaaatgagaagatatacaagaa #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGC-CTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg ccttggtcaaggtcagggctatttaaagttgtttttgtttgctatttcaggTTTTCCATAGGCTTCACCTTTTATGGACTAGCAATTGAC---------CTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTTCCAGTAAAGACAGGTAGTCTTGCTCC-GATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTGGTGCCCCATggtaggactataatctcttactgagtgaaagtgttcaacagaaaagggaga Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg ccttggtcaaggtcagggctatttaaagttgtttttgtttgctatttcaggTTTTCCATAGGCTTCACCTTTTATGGACTAGCAATTGAC---------CTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTTCCAGTAAAGACAGGTAGTCTTGCTCCGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTGGTGCCCCATggtaggactataatctcttactgagtgaaagtgttcaacagaaaagggaga Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ccttggtcaaggtcagggctatttaaagttgtttttgtttgctatttcagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCAATTGAC---------CTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTTCCAGTAAAGACAGGTAGTCTTGCTCCGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTGGTGCCCCATGgtaggactataatctcttactgagtgaaagtgttcaacagaaaagggaga Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ccttggtcaaggtcagggctatttaaagttgtttttgtttgctatttcagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCAATTGA---------CCTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTTCCAGTAAAGACAGGTAGTCTTGCTCCGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGG---TTCCTGGACTATGTATACTTTCCAATGTATTGGTGCCCCATGgtaggactataatctcttactgagtgaaagtgttcaacagaaaagggaga Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ccttggtcaaggtcagggctatttaaagttgtttttgtttgctatttcagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCAATTGA---------CCTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTTCCAGTAAAGACAGGTAGTCTTGCTCCGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGG---TTCCTGGACTATGTATACTTTCCAATGTATTGGTGCCCCATGgtaggactataatctcttactgagtgaaagtgttcaacagaaaagggaga Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ccttggtcaaggtcagggctatttaaagttgtttttgtttgctatttcagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCAATTGAC---------CTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTTCCAGTAAAGACAGGTAGTCTTGCTCCGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTGGTGCCCCATGgtaggactataatctcttactgagtgaaagtgttcaacagaaaagggaga Alignment from Exonerate_coding2genome ccttggtcaaggtcagggctatttaaagttgtttttgtttgctatttcaggttttccataggcttcaccttttatggactagcaattgaccttgggagcaacatattcctcctccaatcgatcattgggattgtggattttccagtaaagacaggtagtcttgctccgattacacatttgggccaacacctctgtcaggtcagttttttggttcctggactatgtatactttccaatgtattggtgccccatggtaggactataatctcttactgagtgaaagtgttcaacagaaaagggaga Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ccttggtcaaggtcagggctatttaaagttgtttttgtttgctatttcagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCAATTGACCTT---------GGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTTCCAGTAAAGACAGGTAGTCTTGCTCCGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTGGTGCCCCATGgtaggactataatctcttactgagtgaaagtgttcaacagaaaagggaga #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTAT---------------CTT-CTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gttatccatagaactattactgcgcctcaacaagggtgcccggctgtcaggTTCGGCTGCAGAAGGGTCCTGACCTGGAGCTACCTGACCTGGAGCTACCTTCTTGGTGT-TGTGTCTGTCACAGGTGCCGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTATTCTTTACTACTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTtgtgaggcaagtggtttctggctgacaggatgatttatcacacttcactca Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTAT---------------CTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gttatccatagaactattactgcgcctcaacaagggtgcccggctgtcaggTTCGGCTGCAGAAGGGTCCTGACCTGGAGCTACCTGACCTGGAGCTACCTTCTTGGTGTTGTGTCTGTCACAGGTGCCGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTATTCTTTACTACTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTtgtgaggcaagtggtttctggctgacaggatgatttatcacacttcactca Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTG---------------CTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttatccatagaactattactgcgcctcaacaagggtgcccggctgtcagGTTCGGCTGCAGAAGGGTCCTGACCTGGAGCTACCTGACCTGGAGCTACCTTCTTGGTGTTGTGTCTGTCACAGGTGCCGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTATTCTTTACTACTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtgaggcaagtggtttctggctgacaggatgatttatcacacttcactca Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTG---------------CTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttatccatagaactattactgcgcctcaacaagggtgcccggctgtcagGTTCGGCTGCAGAAGGGTCCTGACCTGGAGCTACCTGACCTGGAGCTACCTTCTTGGTGTTGTGTCTGTCACAGGTGCCGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTATTCTTTACTACTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtgaggcaagtggtttctggctgacaggatgatttatcacacttcactca Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATC----------------TTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttatccatagaactattactgcgcctcaacaagggtgcccggctgtcagGTTCGGCTGCAGAAGGGTCCTGACCTGGAGCTACCTGACCTGGAGCTACCTTCTTGGTGT-TGTGTCTGTCACAGGTGCCGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTATTCTTTACTACTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtgaggcaagtggtttctggctgacaggatgatttatcacacttcactca Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttatccatagaactattactgcgcctcaacaagggtgcccggctgtcaggttcggctgcagaagGGTCCTGACCTGGAGCTACCTGACCTGGAGCTACCTTCTTGGTGTTGTGTCTGTCACAGGTGCCGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTATTCTTTACTACTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtgaggcaagtggtttctggctgacaggatgatttatcacacttcactca Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttatccatagaactattactgcgcctcaacaagggtgcccggctgtcaggttcggctgcagaagGGTCCTGACCTGGAGCTACCTGACCTGGAGCTACCTTCTTGGTGTTGTGTCTGTCACAGGTGCCGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTATTCTTTACTACTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtgaggcaagtggtttctggctgacaggatgatttatcacacttcactca Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCC---------------GTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gttatccatagaactattactgcgcctcaacaagggtgcccggctgtcagGTTCGGCTGCAGAAGGGTCCTGACCTGGAGCTACCTGACCTGGAGCTACCTTCTTGGTGTTGTGTCTGTCACAGGTGCCGCTTTCATGCCCACCTTTCCACTGCATTGTCTGTATTCTTTACTACTAGCCTCCTCAGTGGCTGGTATCATGATGAATACAGCCAGTCTTTgtgaggcaagtggtttctggctgacaggatgatttatcacacttcactca #### Slc22a20_ID1345_8 --> 2 - 2 Original Alignment atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCC-TTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag ataccagtacatgtaagtccagcctagagcgttgttctttaaattttcaggtCAGCAAATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGTTGAGTTCACTTTA-CTGTGTGTACCTTTTTATAGGGGGACTATATCCA------ATCaggttagtccaggacttaatcatctctagaccaggtccttctatctgtctcc Alignment from CESAR atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag ataccagtacatgtaagtccagcctagagcgttgttctttaaattttcaggtCAGCAAATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGTTGAGTTCACTTTACTGTGTGTACCTTTTTATAGGGGGACTATATCCA------ATCaggttagtccaggacttaatcatctctagaccaggtccttcatctctgctgt Alignment from Spaln_aa2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ataccagtacatgtaagtccagcctagagcgttgttctttaaattttcagGTCAGCAAATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGTTGAGTTCACTTTACTGTGTGTACCTTTTTATAGGGGGACTATATCCA------ATCAGgttagtccaggacttaatcatctctagaccaggtccttctatctgtctcc Alignment from Spaln_nt2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ataccagtacatgtaagtccagcctagagcgttgttctttaaattttcagGTCAGCAAATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGTTGAGTTCACTTTACTGTGTGTACCTTTTTATAGGGGGACTATATCC------AATCAGgttagtccaggacttaatcatctctagaccaggtccttctatctgtctcc Alignment from Pairagon ataccagtacatgtaagtccagcctagagcgttgttctttaaattttcaggtcagcaaatgttgcgaactgtgccagctgaactagggaagggctgtctgttgagttcactttactgtgtgtacctttttatagggggactatatccaatcaggttagtccaggacttaatcatctctagaccaggtccttctatctgtctcc Alignment from Exonerate_protein2genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ataccagtacatgtaagtccagcctagagcgttgttctttaaattttcagGTCAGCAAATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGTTGAGTTCACTTTACTGTGTGTACCTTTTTATAGGGGGACTATATCCA------ATCAGgttagtccaggacttaatcatctctagaccaggtccttctatctgtctcc Alignment from Exonerate_coding2genome ataccagtacatgtaagtccagcctagagcgttgttctttaaattttcaggtcagcaaatgttgcgaactgtgccagctgaactagggaagggctgtctgttgagttcactttactgtgtgtacctttttatagggggactatatccaatcaggttagtccaggacttaatcatctctagaccaggtccttctatctgtctcc Alignment from GeneWise ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATC---------------------------------------------- ataccagtacatgtaagtccagcctagagcgttgttctttaaattttcagGTCAGCAAATGTTGCGAACTGTGCCAGCTGAACTAGGGAAGGGCTGTCTGTTGAGTTCACTTTACTGTGTGTACCTTTTTATAGGGGGACTATATCCAATCAGGTTAGTCCAGGACTTAATCATCTCTAGACCAGGTCCTTCTATCTGTCTCC #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAG-CTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cttccacagtacaaaaccccccctaaagattgacaaaagctctttttcagtgTTAGAATGGACAAGCCCTAAAACCCGAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCCTT---GTAT-TGTGCCTATTTTCGTTTTGCTTGTACCAACAaggtaagtcacaagaattcttatacaccattctgtccaacggtccattagag Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cttccacagtacaaaaccccccctaaagattgacaaaagctctttttcagtgTTAGAATGGACAAGCCCTAAAACCCGAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCCTTGTATT---GTGCCTATTTTCGTTTTGCTTGTACCAACAaggtaagtcacaagaattcttatacaccattctgtccaacggtccattagag Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cttccacagtacaaaaccccccctaaagattgacaaaagctctttttcagTGTTAGAATGGACAAGCCCTAAAACCCGAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCCTTGTATT---GTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaattcttatacaccattctgtccaacggtccattagag Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cttccacagtacaaaaccccccctaaagattgacaaaagctctttttcagTGTTAGAATGGACAAGCCCTAAAACCCGAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCCTTGTAT---TGTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaattcttatacaccattctgtccaacggtccattagag Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATC------TGTGCCAATATTTGTCTTGCTTATACCCACAAG cttccacagtacaaaaccccccctaaagattgacaaaagctctttttcagTGTTAGAATGGACAAGCCCTAAAACCCGAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGC---------CTTGTATTGTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaattcttatacaccattctgtccaacggtccattagag Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cttccacagtacaaaaccccccctaaagattgacaaaagctctttttcagTGTTAGAATGGACAAGCCCTAAAACCCGAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCCTTGTATT---GTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaattcttatacaccattctgtccaacggtccattagag Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cttccacagtacaaaaccccccctaaagattgacaaaagctctttttcagTGTTAGAATGGACAAGCCCTAAAACCCGAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCCTTGTATT---GTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaattcttatacaccattctgtccaacggtccattagag Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cttccacagtacaaaaccccccctaaagattgacaaaagctctttttcagTGTTAGAATGGACAAGCCCTAAAACCCGAGCATGGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTTTGGCAGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCCTTGTATT---GTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaattcttatacaccattctgtccaacggtccattagag #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTG-TGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATG---ATGTTTGGCTACCTGGCGGACag gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTT---CTGCTCCC-TAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTG---TTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATaggttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATG---TTTGGCTACCTGGCGGACag gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTTCTGCTCCCT---AGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGTTT---GGTGCCATGATGTTGTTTGGTTACCTTTCAGATaggttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTTCTG---CTCCCTAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTT---TGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCT--TCTGCTC-CCTAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGT---TTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGA---TGTTTGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTTCTGCTCCC---TAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGT---TTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTTCTGCTCCCT---AGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Exonerate_coding2genome gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagtggaaccttctgctccctagagcctttcaccgattggcccagtcactgttcatggtaggagtgtttggtgccatgatgttgtttggttacctttcagataggttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTTCTGCTCCCT---AGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTGGGG-CACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacccccaccccctctgctccccagggGCTGTGGGCCTGGTTCTGGGGCCACCCAT-TGACACTGTAAAGgtacgcacctgctgggatgaaagcaaatatactgggatgaaggcgaatat Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacccccaccccctctgctccccagggGCTGTGGGCCTGGTTCTGGGGCCACCCATTGACACTGTAAAGgtacgcacctgctgggatgaaagcaaatatactgggatgaaggcgaatat Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacccccaccccctctgctccccagGGGCTGTGGGCCTGGTTCTGGGGCCACCCATTGACACTGTAAAGgtacgcacctgctgggatgaaagcaaatatactgggatgaaggcgaatat Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacccccaccccctctgctccccagGGGCTGTGGGCCTGGTTCTGGGGCCACCCATTGACACTGTAAAGgtacgcacctgctgggatgaaagcaaatatactgggatgaaggcgaatat Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacccccaccccctctgctccccagGGGCTGTGGGCCTGGTTCTGGGGCCACCCATTGACACTGTAAAGgtacgcacctgctgggatgaaagcaaatatactgggatgaaggcgaatat Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacccccaccccctctgctccccagGGGCTGTGGGCCTGGTTCTGGGGCCACCCATTGACACTGTAAAGgtacgcacctgctgggatgaaagcaaatatactgggatgaaggcgaatat Alignment from Exonerate_coding2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAGGTGCGGTTACAGACCCAAAGCA gaatcatgtccagggggtctggctagacccccaccccctctgctccccagGGGCTGTGGGCCTGGTTCTGGGGCCACCCATTGACACTGTAAAGGTACGCACCTGCTGGGATGAAAgcaaatatactgggatgaaggcgaatat Alignment from GeneWise gaatcatgtccagggggtctggctagacccccaccccctctgctccccaggggctgtgggcctggttctggggccacccattgacactgtaaaggtacgcacctgctgggatgaaagcaaatatactgggatgaaggcgaatat #### Slc29a2_ID789_3 --> 0 - 2 Original Alignment TACTTCCAGGGGCGGTTAGCAGGGACCAACAGC-AGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAG---tg tgggggttactcttgagaagctccctgtcattgtgtctcctgtccactagTATCTCCGGGGACAGTTGGCGGGTACTAACAGCCAGTG-TGACACCATCAGCAAAAACCACACCAGTCCTACTGATGTATCAAATGTCAACAATTGGGTGACACTGCTATCGCAATTGCCTCTATTATTGTTCACACTGCTCAACTCCTTCCTGTACCAGTGGtggtatataccatatagagtcaatccctcaacaaccattatcatacacctct Alignment from CESAR TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg tgggggttactcttgagaagctccctgtcattgtgtctcctgtccactagTATCTCCGGGGACAGTTGGCGGGTACTAACAGCCAGTGTGACACCATCAGCAAAAACCACACCAGTCCTACTGATGTATCAAATGTCAACAATTGGGTGACACTGCTATCGCAATTGCCTCTATTATTGTTCACACTGCTCAACTCCTTCCTGTACCAGtggtggtatataccatatagagtcaatccctcaacaaccattatcatacacctct Alignment from Spaln_aa2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaagctccctgtcattgtgtctcctgtccactagTATCTCCGGGGACAGTTGGCGGGTACTAACAGCCAGTGTGACACCATCAGCAAAAACCACACCAGTCCTACTGATGTATCAAATGTCAACAATTGGGTGACACTGCTATCGCAATTGCCTCTATTATTGTTCACACTGCTCAACTCCTTCCTGTACCAGTGgtggtatataccatatagagtcaatccctcaacaaccattatcatacacctct Alignment from Spaln_nt2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGC-AGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaagctccctgtcattgtgtctcctgtccactagTATCTCCGGGGACAGTTGGCGGGTACTAACAGCCAGTG-TGACACCATCAGCAAAAACCACACCAGTCCTACTGATGTATCAAATGTCAACAATTGGGTGACACTGCTATCGCAATTGCCTCTATTATTGTTCACACTGCTCAACTCCTTCCTGTACCAGTGgtggtatataccatatagagtcaatccctcaacaaccattatcatacacctct Alignment from Pairagon TACTTCCAGGGGCGGTTAGCAGGGACCAACAG-CAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaagctccctgtcattgtgtctcctgtccactagTATCTCCGGGGACAGTTGGCGGGTACTAACAGCCAGTG-TGACACCATCAGCAAAAACCACACCAGTCCTACTGATGTATCAAATGTCAACAATTGGGTGACACTGCTATCGCAATTGCCTCTATTATTGTTCACACTGCTCAACTCCTTCCTGTACCAGTGgtggtatataccatatagagtcaatccctcaacaaccattatcatacacctct Alignment from Exonerate_protein2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaagctccctgtcattgtgtctcctgtccactagTATCTCCGGGGACAGTTGGCGGGTACTAACAGCCAGTGTGACACCATCAGCAAAAACCACACCAGTCCTACTGATGTATCAAATGTCAACAATTGGGTGACACTGCTATCGCAATTGCCTCTATTATTGTTCACACTGCTCAACTCCTTCCTGTACCAGTGgtggtatataccatatagagtcaatccctcaacaaccattatcatacacctct Alignment from Exonerate_coding2genome tgggggttactcttgagaagctccctgtcattgtgtctcctgtccactagtatctccggggacagttggcgggtactaacagccagtgtgacaccatcagcaaaaaccacaccagtcctactgatgtatcaaatgtcaacaattgggtgacactgctatcgcaattgcctctattattgttcacactgctcaactccttcctgtaccagtggtggtatataccatatagagtcaatccctcaacaaccattatcatacacctct Alignment from GeneWise TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaagctccctgtcattgtgtctcctgtccactagTATCTCCGGGGACAGTTGGCGGGTACTAACAGCCAGTGTGACACCATCAGCAAAAACCACACCAGTCCTACTGATGTATCAAATGTCAACAATTGGGTGACACTGCTATCGCAATTGCCTCTATTATTGTTCACACTGCTCAACTCCTTCCTGTACCAGTGgtggtatataccatatagagtcaatccctcaacaaccattatcatacacctct #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccaggtGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTCGTGGGCA-CCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccaggtGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTCGTGGGCACCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTCGTGGGCACCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTCGTGGGCA-CCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTCGTGGGCA-CCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTCGTGGGCACCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTCGTGGGCACCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag #### Slit1_ID8208_30 --> 2 - 2 Original Alignment gaAGGGCCTGTGAGCAGCTGGTGGACTTCTGC-TCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCag ccaaatgggtaacaataactggattgcttgttgtttggtaattattgcaggaCGC---TGTGAACAGCTAGTTGACTTTTGCCTCCCCAGACA-GAACCCATGTCAACATGAGGCTCAATGTGTTAGCACCTTAGACGGCCCCaggtaggtattactaccactgttgatcatcagttcgctgccgggcatcttta Alignment from CESAR gaAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCag ccaaatgggtaacaataactggattgcttgttgtttggtaattattgcaggaCGC---TGTGAACAGCTAGTTGACTTTTGCCTCCCCAGACAGAACCCATGTCAACATGAGGCTCAATGTGTTAGCACCTTAGACGGCCCCaggtaggtattactaccactgttgatcatcagttcgctgccgggcatcttta Alignment from Spaln_aa2Genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG ccaaatgggtaacaataactggattgcttgttgtttggtaattattgcagGACGC---TGTGAACAGCTAGTTGACTTTTGCCTCCCCAGACAGAACCCATGTCAACATGAGGCTCAATGTGTTAGCACCTTAGACGGCCCCAGgtaggtattactaccactgttgatcatcagttcgctgccgggcatcttta Alignment from Spaln_nt2Genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGC-TCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG ccaaatgggtaacaataactggattgcttgttgtttggtaattattgcagGACG---CTGTGAACAGCTAGTTGACTTTTGCCTCCCCAGACA-GAACCCATGTCAACATGAGGCTCAATGTGTTAGCACCTTAGACGGCCCCAGgtaggtattactaccactgttgatcatcagttcgctgccgggcatcttta Alignment from Pairagon GAAGGGCCTGTGAGCAGCTGGTGGACTTCTG-CTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG ccaaatgggtaacaataactggattgcttgttgtttggtaattattgcagGACG---CTGTGAACAGCTAGTTGACTTTTGCCTCCCCAGACA-GAACCCATGTCAACATGAGGCTCAATGTGTTAGCACCTTAGACGGCCCCAGgtaggtattactaccactgttgatcatcagttcgctgccgggcatcttta Alignment from Exonerate_protein2genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG ccaaatgggtaacaataactggattgcttgttgtttggtaattattgcagGACGC---TGTGAACAGCTAGTTGACTTTTGCCTCCCCAGACAGAACCCATGTCAACATGAGGCTCAATGTGTTAGCACCTTAGACGGCCCCAGgtaggtattactaccactgttgatcatcagttcgctgccgggcatcttta Alignment from Exonerate_coding2genome ccaaatgggtaacaataactggattgcttgttgtttggtaattattgcaggacgctgtgaacagctagttgacttttgcctccccagacagaacccatgtcaacatgaggctcaatgtgttagcaccttagacggccccaggtaggtattactaccactgttgatcatcagttcgctgccgggcatcttta Alignment from GeneWise GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG ccaaatgggtaacaataactggattgcttgttgtttggtaattattgcagGACGC---TGTGAACAGCTAGTTGACTTTTGCCTCCCCAGACAGAACCCATGTCAACATGAGGCTCAATGTGTTAGCACCTTAGACGGCCCCAGgtaggtattactaccactgttgatcatcagttcgctgccgggcatcttta #### Slit1_ID8222_17 --> 1 - 2 Original Alignment aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAG-AAGCTCTCACATCTGAAGAAAat tgagatggaggggggagctaggggttgatgaccctcagtgccacccccagtCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGTTTATTTAGGCAAGCTCA-ACATCTGGAGAAAatgtactaacagatttgattctgaacagtggttgtatgaagcaggactaact Alignment from CESAR aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat tgagatggaggggggagctaggggttgatgaccctcagtgccacccccagtCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGTTTATTTAGGCAAGCTCAACATCTGGAGAAAatgtactaacagatttgattctgaacagtggttgtatgaagcaggactaact Alignment from Spaln_aa2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tgagatggaggggggagctaggggttgatgaccctcagtgccacccccagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGTTTATTTAGGCAAGCTCAACATCTGGAGAAAATgtactaacagatttgattctgaacagtggttgtatgaagcaggactaact Alignment from Spaln_nt2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAG-AAGCTCTCACATCTGAAGAAAAT tgagatggaggggggagctaggggttgatgaccctcagtgccacccccagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGTTTATTTAGGCAAGCTC-AACATCTGGAGAAAATgtactaacagatttgattctgaacagtggttgtatgaagcaggactaact Alignment from Pairagon ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAG-AAGCTCTCACATCTGAAGAAAAT tgagatggaggggggagctaggggttgatgaccctcagtgccacccccagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGTTTATTTAGGCAAGCTC-AACATCTGGAGAAAATgtactaacagatttgattctgaacagtggttgtatgaagcaggactaact Alignment from Exonerate_protein2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tgagatggaggggggagctaggggttgatgaccctcagtgccacccccagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGTTTATTTAGGCAAGCTCAACATCTGGAGAAAATgtactaacagatttgattctgaacagtggttgtatgaagcaggactaact Alignment from Exonerate_coding2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tgagatggaggggggagctaggggttgatgaccctcagtgccacccccagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGTTTATTTAGGCAAGCTCAACATCTGGAGAAAATgtactaacagatttgattctgaacagtggttgtatgaagcaggactaact Alignment from GeneWise ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tgagatggaggggggagctaggggttgatgaccctcagtgccacccccagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGTTTATTTAGGCAAGCTCAACATCTGGAGAAAATgtactaacagatttgattctgaacagtggttgtatgaagcaggactaact #### Slk_ID10264_16 --> 0 - 0 Original Alignment GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAAC-AGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatcccctaaaatagtagttagttctggattcgtgatttgcaatttccagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATCAGAGAGA-TCAGGAAAGAGCGCGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGATCAAGATCATGAAAAAATAAAACAAgtgagtgatagttcaatctctttacctcaatatgagatgtatgtaaaaac Alignment from CESAR GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatcccctaaaatagtagttagttctggattcgtgatttgcaatttccagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATCAGAGAGATCAGGAAAGAGCGCGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGATCAAGATCATGAAAAAATAAAACAAgtgagtgatagttcaatctctttacctcaatatgagatgtatgtaaaaac Alignment from Spaln_aa2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatcccctaaaatagtagttagttctggattcgtgatttgcaatttccagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATCAGAGAGATCAGGAAAGAGCGCGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGATCAAGATCATGAAAAAATAAAACAAgtgagtgatagttcaatctctttacctcaatatgagatgtatgtaaaaac Alignment from Spaln_nt2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAA-CAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatcccctaaaatagtagttagttctggattcgtgatttgcaatttccagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATCAGAGAGA-TCAGGAAAGAGCGCGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGATCAAGATCATGAAAAAATAAAACAAgtgagtgatagttcaatctctttacctcaatatgagatgtatgtaaaaac Alignment from Pairagon GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAA-CAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatcccctaaaatagtagttagttctggattcgtgatttgcaatttccagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATCAGAGAGA-TCAGGAAAGAGCGCGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGATCAAGATCATGAAAAAATAAAACAAgtgagtgatagttcaatctctttacctcaatatgagatgtatgtaaaaac Alignment from Exonerate_protein2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatcccctaaaatagtagttagttctggattcgtgatttgcaatttccagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATCAGAGAGATCAGGAAAGAGCGCGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGATCAAGATCATGAAAAAATAAAACAAgtgagtgatagttcaatctctttacctcaatatgagatgtatgtaaaaac Alignment from Exonerate_coding2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatcccctaaaatagtagttagttctggattcgtgatttgcaatttccagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATCAGAGAGATCAGGAAAGAGCGCGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGATCAAGATCATGAAAAAATAAAACAAgtgagtgatagttcaatctctttacctcaatatgagatgtatgtaaaaac Alignment from GeneWise GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aatcccctaaaatagtagttagttctggattcgtgatttgcaatttccagGAAACCGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATCAGAGAGATCAGGAAAGAGCGCGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGATCAAGATCATGAAAAAATAAAACAAgtgagtgatagttcaatctctttacctcaatatgagatgtatgtaaaaac #### Smarca2_ID5734_15 --> 1 - 0 Original Alignment gACTCTGTCTAACTGGACATATGAATTTGAC-AAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtgttatgcctgctagttttttaactcccttgtgctctgtggtaccaggAGCTTGTTTAATTGGACATATGAGTTTGACCAGATGGG-CCCTACAGTGGTGAAAATTGCTTACAAGgtaatgatcacatgctataacatatgtgaaatagggcttgtttaggttat Alignment from CESAR gACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtgttatgcctgctagttttttaactcccttgtgctctgtggtaccaggAGCTTGTTTAATTGGACATATGAGTTTGACCAGATGGGCCCTACAGTGGTGAAAATTGCTTACAAGgtaatgatcacatgctataacatatgtgaaatagggcttgtttaggttat Alignment from Spaln_aa2Genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtgttatgcctgctagttttttaactcccttgtgctctgtggtaccagGAGCTTGTTTAATTGGACATATGAGTTTGACCAGATGGGCCCTACAGTGGTGAAAATTGCTTACAAGgtaatgatcacatgctataacatatgtgaaatagggcttgtttaggttat Alignment from Spaln_nt2Genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtgttatgcctgctagttttttaactcccttgtgctctgtggtaccagGAGCTTGTTTAATTGGACATATGAGTTTGACCAGATGGGCCCTACAGTGGTGAAAATTGCTTACAAGgtaatgatcacatgctataacatatgtgaaatagggcttgtttaggttat Alignment from Pairagon GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtgttatgcctgctagttttttaactcccttgtgctctgtggtaccagGAGCTTGTTTAATTGGACATATGAGTTTGACCAGATGGGCCCTACAGTGGTGAAAATTGCTTACAAGgtaatgatcacatgctataacatatgtgaaatagggcttgtttaggttat Alignment from Exonerate_protein2genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtgttatgcctgctagttttttaactcccttgtgctctgtggtaccagGAGCTTGTTTAATTGGACATATGAGTTTGACCAGATGGGCCCTACAGTGGTGAAAATTGCTTACAAGgtaatgatcacatgctataacatatgtgaaatagggcttgtttaggttat Alignment from Exonerate_coding2genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtgttatgcctgctagttttttaactcccttgtgctctgtggtaccagGAGCTTGTTTAATTGGACATATGAGTTTGACCAGATGGGCCCTACAGTGGTGAAAATTGCTTACAAGgtaatgatcacatgctataacatatgtgaaatagggcttgtttaggttat Alignment from GeneWise GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtgttatgcctgctagttttttaactcccttgtgctctgtggtaccagGAGCTTGTTTAATTGGACATATGAGTTTGACCAGATGGGCCCTACAGTGGTGAAAATTGCTTACAAGgtaatgatcacatgctataacatatgtgaaatagggcttgtttaggttat #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGAT-CAGTATTTCCTAGATAAGAAGATGGTCac aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCCTGT-TTTTCTAGATCAGAAGATGGTCacgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCCTGTTTTTCTAGATCAGAAGATGGTCacgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCCTGTTTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCCTGTTTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCCTGTTTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCCTGTTTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Exonerate_coding2genome TTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCAATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACG ATCACCCAGAGACTGGGGATCTTTCATGTTCACCCTTTA----ATAACAGATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCCTGTTTTTCTAGATCAGAAGATGGTCAC-gtaaggattctttctattcttaccaaccatagagtgttacagatgttcc Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCCTGTTTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca #### Smc3_ID11322_10 --> 0 - 0 Original Alignment CTTTCTGCTAAGCGAGAAACGAGTGGAGAG-AAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAA-ACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from CESAR CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Spaln_aa2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Spaln_nt2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Pairagon CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Exonerate_protein2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Exonerate_coding2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from GeneWise CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAA-AGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacctgcaactcagtagtgcactttctctttgtcggttgcccctacagGATACCGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAACAGGACAA-GTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtctaccatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacctgcaactcagtagtgcactttctctttgtcggttgcccctacagGATACCGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAACAGGACAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtctaccatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacctgcaactcagtagtgcactttctctttgtcggttgcccctacagGATACCGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAACAGGACAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtctaccatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacctgcaactcagtagtgcactttctctttgtcggttgcccctacagGATACCGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAACAGGACAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtctaccatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacctgcaactcagtagtgcactttctctttgtcggttgcccctacagGATACCGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAACAGGACAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtctaccatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacctgcaactcagtagtgcactttctctttgtcggttgcccctacagGATACCGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAACAGGACAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtctaccatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacctgcaactcagtagtgcactttctctttgtcggttgcccctacagGATACCGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAACAGGACAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtctaccatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG ctcacctgcaactcagtagtgcactttctctttgtcggttgcccctacagGATACCGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAACAGGACAAGTTGGAACTCAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGCgtctaccatagtgtacagcacaaaaagaaaactggtcagatttctgtgta #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGG-GGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tcgtttataaaagaagcatgccacctagatgtctgcttctgtgtccacagGTATCTAAGAACTTTAGTGAAATCTTCCAGAAATTGGTACCTGGTGGCAAATCAACTTTGGTGATGAAGAAAGGTGATGTGGAGAGCAGTGAATCTAAGGACAAAGGAGAGGGGAGTGGCGAGAGTGAGCGACGGATCTG-GTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGTgtacgggacttattatacttagtttctcatgtacctttttactttaaaac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tcgtttataaaagaagcatgccacctagatgtctgcttctgtgtccacagGTATCTAAGAACTTTAGTGAAATCTTCCAGAAATTGGTACCTGGTGGCAAATCAACTTTGGTGATGAAGAAAGGTGATGTGGAGAGCAGTGAATCTAAGGACAAAGGAGAGGGGAGTGGCGAGAGTGAGCGACGGATCTGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGTgtacgggacttattatacttagtttctcatgtacctttttactttaaaac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tcgtttataaaagaagcatgccacctagatgtctgcttctgtgtccacagGTATCTAAGAACTTTAGTGAAATCTTCCAGAAATTGGTACCTGGTGGCAAATCAACTTTGGTGATGAAGAAAGGTGATGTGGAGAGCAGTGAATCTAAGGACAAAGGAGAGGGGAGTGGCGAGAGTGAGCGACGGATCTGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGTgtacgggacttattatacttagtttctcatgtacctttttactttaaaac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tcgtttataaaagaagcatgccacctagatgtctgcttctgtgtccacagGTATCTAAGAACTTTAGTGAAATCTTCCAGAAATTGGTACCTGGTGGCAAATCAACTTTGGTGATGAAGAAAGGTGATGTGGAGAGCAGTGAATCTAAGGACAAAGGAGAGGGGAGTGGCGAGAGTGAGCGACGGATCTGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGTgtacgggacttattatacttagtttctcatgtacctttttactttaaaac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tcgtttataaaagaagcatgccacctagatgtctgcttctgtgtccacagGTATCTAAGAACTTTAGTGAAATCTTCCAGAAATTGGTACCTGGTGGCAAATCAACTTTGGTGATGAAGAAAGGTGATGTGGAGAGCAGTGAATCTAAGGACAAAGGAGAGGGGAGTGGCGAGAGTGAGCGACGGATCTGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGTgtacgggacttattatacttagtttctcatgtacctttttactttaaaac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tcgtttataaaagaagcatgccacctagatgtctgcttctgtgtccacagGTATCTAAGAACTTTAGTGAAATCTTCCAGAAATTGGTACCTGGTGGCAAATCAACTTTGGTGATGAAGAAAGGTGATGTGGAGAGCAGTGAATCTAAGGACAAAGGAGAGGGGAGTGGCGAGAGTGAGCGACGGATCTGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGTgtacgggacttattatacttagtttctcatgtacctttttactttaaaac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tcgtttataaaagaagcatgccacctagatgtctgcttctgtgtccacagGTATCTAAGAACTTTAGTGAAATCTTCCAGAAATTGGTACCTGGTGGCAAATCAACTTTGGTGATGAAGAAAGGTGATGTGGAGAGCAGTGAATCTAAGGACAAAGGAGAGGGGAGTGGCGAGAGTGAGCGACGGATCTGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGTgtacgggacttattatacttagtttctcatgtacctttttactttaaaac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGGTG----------------------------------------------- tcgtttataaaagaagcatgccacctagatgtctgcttctgtgtccacagGTATCTAAGAACTTTAGTGAAATCTTCCAGAAATTGGTACCTGGTGGCAAATCAACTTTGGTGATGAAGAAAGGTGATGTGGAGAGCAGTGAATCTAAGGACAAAGGAGAGGGGAGTGGCGAGAGTGAGCGACGGATCTGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGTGTACGGGACTTATTATACTTAGTTTCTCATGTACCTTTTTACTTTAAAAC #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCA-AGAGCTTCGTGCTTCACAGGACTGAATCCTTCG tcagcatactggtatgctcattatttacttgtcttctttgtcctttgaagGCATTTGAAGATCTCCTAAACACATTGGATGAAACTGATGCATTATTAACTGCAGAAAGATCACAGAGCTT-ATGCTTCACAGAATTCAATCCTTCAgtaagtctccatattttttttgtttaccctatttccaaatgactggattc Alignment from CESAR GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG tcagcatactggtatgctcattatttacttgtcttctttgtcctttgaagGCATTTGAAGATCTCCTAAACACATTGGATGAAACTGATGCATTATTAACTGCAGAAAGATCACAGAGCTTATGCTTCACAGAATTCAATCCTTCAgtaagtctccatattttttttgtttaccctatttccaaatgactggattc Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG tcagcatactggtatgctcattatttacttgtcttctttgtcctttgaagGCATTTGAAGATCTCCTAAACACATTGGATGAAACTGATGCATTATTAACTGCAGAAAGATCACAGAGCTTATGCTTCACAGAATTCAATCCTTCAgtaagtctccatattttttttgtttaccctatttccaaatgactggattc Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCA-AGAGCTTCGTGCTTCACAGGACTGAATCCTTCG tcagcatactggtatgctcattatttacttgtcttctttgtcctttgaagGCATTTGAAGATCTCCTAAACACATTGGATGAAACTGATGCATTATTAACTGCAGAAAGATCACAGAGCTT-ATGCTTCACAGAATTCAATCCTTCAgtaagtctccatattttttttgtttaccctatttccaaatgactggattc Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCA-AGAGCTTCGTGCTTCACAGGACTGAATCCTTCG tcagcatactggtatgctcattatttacttgtcttctttgtcctttgaagGCATTTGAAGATCTCCTAAACACATTGGATGAAACTGATGCATTATTAACTGCAGAAAGATCACAGAGCTT-ATGCTTCACAGAATTCAATCCTTCAgtaagtctccatattttttttgtttaccctatttccaaatgactggattc Alignment from Exonerate_protein2genome tcagcatactggtatgctcattatttacttgtcttctttgtcctttgaaggcatttgaagatctcctaaacacattggatgaaactgatgcattattaactgcagaaagatcacagagcttatgcttcacagaattcaatccttcagtaagtctccatattttttttgtttaccctatttccaaatgactggattc Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG tcagcatactggtatgctcattatttacttgtcttctttgtcctttgaagGCATTTGAAGATCTCCTAAACACATTGGATGAAACTGATGCATTATTAACTGCAGAAAGATCACAGAGCTTATGCTTCACAGAATTCAATCCTTCAgtaagtctccatattttttttgtttaccctatttccaaatgactggattc Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG tcagcatactggtatgctcattatttacttgtcttctttgtcctttgaagGCATTTGAAGATCTCCTAAACACATTGGATGAAACTGATGCATTATTAACTGCAGAAAGATCACAGAGCTTATGCTTCACAGAATTCAATCCTTCAgtaagtctccatattttttttgtttaccctatttccaaatgactggattc #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGC-CGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg agCTCA acacttctgctatctattacataaatgctgacacttaccaccattcttagGATCTACTCTACTGCCGCCTCCGGGCATTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGACCACCAGC-ACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCAGACTCTACCAAACAAggtgagtcctgcaggattgtaacttctcttttcccatctctccagaaCTTA Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg agCTCA acacttctgctatctattacataaatgctgacacttaccaccattcttagGATCTACTCTACTGCCGCCTCCGGGCATTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGACCACCAGCACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCAGACTCTACCAAACAAggtgagtcctgcaggattgtaacctctcatactttttaatcctagaaCTTA Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG AGCTCA acacttctgctatctattacataaatgctgacacttaccaccattcttagGATCTACTCTACTGCCGCCTCCGGGCATTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGACCACCAGCACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCAGACTCTACCAAACAAGgtgagtcctgcaggattgtaacttctcttttcccatctctccagAACTTA Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAG-CCGCCAACAGCTGTGCTGCCAGCGC---TTCGAGCGCCTCTCTGACTCCGCCAAACAAG AGCTCA acacttctgctatctattacataaatgctgacacttaccaccattcttagGATCTACTCTACTGCCGCCTCCGGGCATTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGACCACCAGCA-CTGTGTTGCCAGCAACAGTTTGACTGCCTCTCAGACTCTACCAAACAAGgtgagtcctgcaggattgtaacttctcttttcccatctctccagAACTTA Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAG-CCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG AGCTCA acacttctgctatctattacataaatgctgacacttaccaccattcttagGATCTACTCTACTGCCGCCTCCGGGCATTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGACCACCAGCA-CTGTGTTGCCAGCAACAGTTTGACTGCCTCTCAGACTCTACCAAACAAGgtgagtcctgcaggattgtaacttctcttttcccatctctccagAACTTA Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG AGCTCA acacttctgctatctattacataaatgctgacacttaccaccattcttagGATCTACTCTACTGCCGCCTCCGGGCATTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGACCACCAGCACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCAGACTCTACCAAACAAGgtgagtcctgcaggattgtaacttctcttttcccatctctccagAACTTA Alignment from Exonerate_coding2genome acacttctgctatctattacataaatgctgacacttaccaccattcttaggatctactctactgccgcctccgggcattagctgagtatgagaatgctaacaaagctcttgataaagcccggacaaggaaccatgaagtatggccagcagagagaccaccagcactgtgttgccagcaacagtttgactgcctctcagactctaccaaacaaggtgagtcctgcaggattgtaacttctcttttcccatctctccagaactta Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC---TTCGAGCGCCTCTCTGACTCCGCCAAACAAG AGCTCA acacttctgctatctattacataaatgctgacacttaccaccattcttagGATCTACTCTACTGCCGCCTCCGGGCATTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGACCACCAGCACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCAGACTCTACCAAACAAGgtgagtcctgcaggattgtaacttctcttttcccatctctccagAACTTA #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAG-GAAGTCAACCAACTCAAGag atgtgcacataccttgaattgcaataacatattcttgaaatattctacaggcCTGGCAGACAACTATATTCCCATTTCAGCT---GTGAGCAGTCTTGAAACCCAGCGAAG-GAACCAACTTAAAaggtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from CESAR gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag atgtgcacataccttgaattgcaataacatattcttgaaatattctacaggcCTGGCAGACAACTATATTCCCATTTCAGCTGTG---AGCAGTCTTGAAACCCAGCGAAGGAACCAACTTAAAaggtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCA---GCTGTGAGCAGTCTTGAAACCCAGCGAAGGAACCAACTTAAAAGgtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCAGCTG---TGAGCAGTCTTGAAACCCAGCGAAGGAACCAACTTAAAAGgtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Pairagon GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCAGCTG---TGAGCAGTCTTGAAACCCAGCGAAGGAACCAACTTAAAAGgtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCA---GCTGTGAGCAGTCTTGAAACCCAGCGAAGGAACCAACTTAAAAGgtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Exonerate_coding2genome atgtgcacataccttgaattgcaataacatattcttgaaatattctacaggcctggcagacaactatattcccatttcagctgtgagcagtcttgaaacccagcgaaggaaccaacttaaaaggtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from GeneWise GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAGGAGCTT atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCAGCT---GTGAGCAGTCTTGAAACCCAGCGAAGGAACCAACTTAAAAGGTCAGTgtcatgcgacatagcattgcccacccatgaaccattattggggt #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCA-GCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT aacaagcaaaatggcattctagtagacctctaattatcctctctaatcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCTATGCATGAAGTCTTTCTCCAACGCCTGGCACGCCCATC-CACCCTGCGTCGGGATCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaaggttgttgaatcattacaacaaaatgagaggctgatgggcatgtgg Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT aacaagcaaaatggcattctagtagacctctaattatcctctctaatcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCTATGCATGAAGTCTTTCTCCAACGCCTGGCACGCCCATCCACCCTGCGTCGGGATCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaaggttgttgaatcattacaacaaaatgagaggctgatgggcatgtgg Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT aacaagcaaaatggcattctagtagacctctaattatcctctctaatcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCTATGCATGAAGTCTTTCTCCAACGCCTGGCACGCCCATCCACCCTGCGTCGGGATCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaaggttgttgaatcattacaacaaaatgagaggctgatgggcatgtgg Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT aacaagcaaaatggcattctagtagacctctaattatcctctctaatcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCTATGCATGAAGTCTTTCTCCAACGCCTGGCACGCCCATCCACCCTGCGTCGGGATCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaaggttgttgaatcattacaacaaaatgagaggctgatgggcatgtgg Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT aacaagcaaaatggcattctagtagacctctaattatcctctctaatcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCTATGCATGAAGTCTTTCTCCAACGCCTGGCACGCCCATCCACCCTGCGTCGGGATCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaaggttgttgaatcattacaacaaaatgagaggctgatgggcatgtgg Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT aacaagcaaaatggcattctagtagacctctaattatcctctctaatcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCTATGCATGAAGTCTTTCTCCAACGCCTGGCACGCCCATCCACCCTGCGTCGGGATCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaaggttgttgaatcattacaacaaaatgagaggctgatgggcatgtgg Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGATCTG aacaagcaaaatggcattctagtagacctctaattatcctctctaatcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCTATGCATGAAGTCTTTCTCCAACGCCTGGCACGCCCATCCACCCTGCGTCGGGATCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATGTAaggttgttgaatcattacaacaaaatgagaggctgatgggcatgtgg Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT aacaagcaaaatggcattctagtagacctctaattatcctctctaatcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCTATGCATGAAGTCTTTCTCCAACGCCTGGCACGCCCATCCACCCTGCGTCGGGATCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaaggttgttgaatcattacaacaaaatgagaggctgatgggcatgtgg #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGG-GAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc tctagctggaaatgttgtgttaatttgggaaaatcaggctctgattccagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAAGCCTCAAGGGAAAAACTGCAGAGGTTAGGTGAAGGTAATAGTTCAATCACCCGGCGAAGAGTTCT-CAAGATGAAACCAGAGTTAGAAgcgttagtatttccctccatctccttgattctagtagagttttcaaagtctc Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGG-GAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc tctagctggaaatgttgtgttaatttgggaaaatcaggctctgattccagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAAGCCTCAAGGGAAAAACTGCAGAGGTTAGGTGAAGGTAATAGTTCAATCACCCGGCGAAGAGTTCT-CAAGATGAAACCAGAGTTAGAAgcgttagtatttccctccatctccttgattctagtagagttttcaaagtctc Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC tctagctggaaatgttgtgttaatttgggaaaatcaggctctgattccagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAAGCCTCAAGGGAAAAACTGCAGAGGTTAGGTGAAGGTAATAGTTCAATCACCCGGCGAAGAGTTCTCAAGATGAAACCAGAGTTAGAAGCgttagtatttccctccatctccttgattctagtagagttttcaaagtctc Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGG-GAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC tctagctggaaatgttgtgttaatttgggaaaatcaggctctgattccagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAAGCCTCAAGGGAAAAACTGCAGAGGTTAGGTGAAGGTAATAGTTCAATCACCCGGCGAAGAGTTCT-CAAGATGAAACCAGAGTTAGAAGCgttagtatttccctccatctccttgattctagtagagttttcaaagtctc Alignment from Pairagon GTACGCCGGCCTCATCATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGG-GAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC tctagctggaaatgttgtgttaatttgggaaaatcaggctctgattccag----------------CTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAAGCCTCAAGGGAAAAACTGCAGAGGTTAGGTGAAGGTAATAGTTCAATCACCCGGCGAAGAGTTCT-CAAGATGAAACCAGAGTTAGAAGCgttagtatttccctccatctccttgattctagtagagttttcaaagtctc Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC tctagctggaaatgttgtgttaatttgggaaaatcaggctctgattccagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAAGCCTCAAGGGAAAAACTGCAGAGGTTAGGTGAAGGTAATAGTTCAATCACCCGGCGAAGAGTTCTCAAGATGAAACCAGAGTTAGAAGCgttagtatttccctccatctccttgattctagtagagttttcaaagtctc Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC tctagctggaaatgttgtgttaatttgggaaaatcaggctctgattccagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAAGCCTCAAGGGAAAAACTGCAGAGGTTAGGTGAAGGTAATAGTTCAATCACCCGGCGAAGAGTTCTCAAGATGAAACCAGAGTTAGAAGCgttagtatttccctccatctccttgattctagtagagttttcaaagtctc Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC tctagctggaaatgttgtgttaatttgggaaaatcaggctctgattccagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAAGCCTCAAGGGAAAAACTGCAGAGGTTAGGTGAAGGTAATAGTTCAATCACCCGGCGAAGAGTTCTCAAGATGAAACCAGAGTTAGAAGCgttagtatttccctccatctccttgattctagtagagttttcaaagtctc #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTAT-GTGGAAAACGAA------GAGTACGCCGGCCTCATC gaagtaacttgaggtaacaagaaatcgtgactcttggtttttgagttcagGGTGGGCTCCCCCACTCCGCCCAGTCTGAATTCTCAGTCGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGA-TGAAGAGTATGAATATAACAGCCTTGTTgtactttacaatagagcagggttggagtgaaaaaagaccagggaagggtg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAG------TACGCCGGCCTCATC gaagtaacttgaggtaacaagaaatcgtgactcttggtttttgagttcagGGTGGGCTCCCCCACTCCGCCCAGTCTGAATTCTCAGTCGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtactttacaatagagcagggttggagtgaaaaaagaccagggaagggtg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC gaagtaacttgaggtaacaagaaatcgtgactcttggtttttgagttcagGGTGGGCTCCCCCACTCCGCCCAGTCTGAATTCTCAGTCGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtactttacaatagagcagggttggagtgaaaaaagaccagggaagggtg Alignment from Spaln_nt2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGC------CGGCCTCATC gaagtaacttgaggtaacaagaaatcgtgactcttggtttttgagttcagGGTGGGCTCCCCCACTCCGCCCAGTCTGAATTCTCAGTCGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtactttacaatagagcagggttggagtgaaaaaagaccagggaagggtg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCCGGCCTCATC gaagtaacttgaggtaacaagaaatcgtgactcttggtttttgagttcagGGTGGGCTCCCCCACTCCGCCCAGTCTGAATTCTCAGTCGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTA-----------------------------TCgtagagatgaagagtatgaatataacagccttgttgtactttacaatagagcagggttggagtgaaaaaagaccagggaagggtg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCCGGCCTCATCATT gaagtaacttgaggtaacaagaaatcgtgactcttggtttttgagttcagGGTGGGCTCCCCCACTCCGCCCAGTCTGAATTCTCAGTCGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTgttgtactttacaatagagcagggttggagtgaaaaaagaccagggaagggtg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCCGGCCTCATCATT gaagtaacttgaggtaacaagaaatcgtgactcttggtttttgagttcagGGTGGGCTCCCCCACTCCGCCCAGTCTGAATTCTCAGTCGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTgttgtactttacaatagagcagggttggagtgaaaaaagaccagggaagggtg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC gaagtaacttgaggtaacaagaaatcgtgactcttggtttttgagttcagGGTGGGCTCCCCCACTCCGCCCAGTCTGAATTCTCAGTCGTTTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATCGTAGAGATGAAGAGTATGAATATAACAGCCTTGTTgtactttacaatagagcagggttggagtgaaaaaagaccagggaagggtg #### Sptbn2_ID609_4 --> 0 - 2 Original Alignment ATCCAAGACATCAGTGTGGAG-ACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAgg aTACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAACACAGAAG-TAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTgggtaagagatgtgagagttgtaacctttctccccaggTACCCCAATGTCAA Alignment from CESAR ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAgg aTACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAACACAGAAGTAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTgggtaagagatgtgaaggttgccccctttcccctcaggTACCCCAATGTCAA Alignment from Spaln_aa2Genome ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAACACAGAAGTAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTGGgtaagagatgtgagagttgtaacctttctccccagGTACCCCAATGTCAA Alignment from Spaln_nt2Genome ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAACACAGAAGTAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTGGgtaagagatgtgagagttgtaacctttctccccagGTACCCCAATGTCAA Alignment from Pairagon ATCCAAGACATCAGTGTGGAG-ACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAACACAGAAG-TAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTGGgtaagagatgtgagagttgtaacctttctccccagGTACCCCAATGTCAA Alignment from Exonerate_protein2genome atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagatacaagacatcagtgtggaacacagaagtaataaggagaagaagtcaactaaagatgtcctgctgctgtggtgtcagatgaaaacagctgggtaagagatgtgagagttgtaacctttctccccaggtaccccaatgtcaa Alignment from Exonerate_coding2genome atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagatacaagacatcagtgtggaacacagaagtaataaggagaagaagtcaactaaagatgtcctgctgctgtggtgtcagatgaaaacagctgggtaagagatgtgagagttgtaacctttctccccaggtaccccaatgtcaa Alignment from GeneWise ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAACACAGAAGTAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTGGgtaagagatgtgagagttgtaacctttctccccagGTACCCCAATGTCAA #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment GATGAAGACTGCAgg aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGG-CTGGCCTTTAATGCCATTGTGCACAAACACcg GATGAAAACAGCTgggcaagtgatgtgaaggttgccccctttcccctcaggTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCCTAGCCT-CAATGCCATCATACATAAACACcggtgggcgtgtgaggtcctagctcctgacttacctatttgttcggatgtat Alignment from CESAR GATGAAGACTGCAgg aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg GATGAAAACAGCTgggtaagagatgtgaaggttgccccctttcccctcaggTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCCTAGCCTCAATGCCATCATACATAAACACcggtgggcgtgtgaggtcctagctcctgacttacctatttgttcggatgtat Alignment from Spaln_aa2Genome GATGAAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG GATGAAAACAGCTGGgcaagtgatgtgaaggttgccccctttcccctcagGTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCCTAGCCTCAATGCCATCATACATAAACACCGgtgggcgtgtgaggtcctagctcctgacttacctatttgttcggatgtat Alignment from Spaln_nt2Genome GATGAAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG GATGAAAACAGCTGGgcaagtgatgtgaaggttgccccctttcccctcagGTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCCTAGCCTCAATGCCATCATACATAAACACCGgtgggcgtgtgaggtcctagctcctgacttacctatttgttcggatgtat Alignment from Pairagon GATGAAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG GATGAAAACAGCTGGgcaagtgatgtgaaggttgccccctttcccctcagGTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCCTAGCCTCAATGCCATCATACATAAACACCGgtgggcgtgtgaggtcctagctcctgacttacctatttgttcggatgtat Alignment from Exonerate_protein2genome gatgaaaacagctgggcaagtgatgtgaaggttgccccctttcccctcaggtaccccaatgtcaatgtgcataacttcaccaccagctggagagatgggcctagcctcaatgccatcatacataaacaccggtgggcgtgtgaggtcctagctcctgacttacctatttgttcggatgtat Alignment from Exonerate_coding2genome gatgaaaacagctgggcaagtgatgtgaaggttgccccctttcccctcaggtaccccaatgtcaatgtgcataacttcaccaccagctggagagatgggcctagcctcaatgccatcatacataaacaccggtgggcgtgtgaggtcctagctcctgacttacctatttgttcggatgtat Alignment from GeneWise ATGAAGACTGCAGGA------------------------------------TACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ATGAAAACAGCTGGGCAAGTGATGTG-AAGGTTGCCCCCTTTCCCCTCAGGTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCCTAGCCTCAATGCCATCATACATAAACACCGgtgggcgtgtgaggtcctagctcctgacttacctatttgttcggatgtat #### Sptbn2_ID611_6 --> 1 - 1 Original Alignment gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACG-AAGCTCCTGGATCCTGAAg cagtcaaaatggcaatagcacaacaggatgatgatttgctccacatttagtCCAGATCTGTTGGATTTTGAGTCCCTAAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGACAGAA-CCTGGATTCTGAGggtaatttgggttaagccagctgatagcaagatagaggctactatagagtt Alignment from CESAR gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAg cagtcaaaatggcaatagcacaacaggatgatgatttgctccacatttagtCCAGATCTGTTGGATTTTGAGTCCCTAAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGACAGAACCTGGATTCTGAGggtaatttgggttaagccagctgatagcaagatagaggctactatagagtt Alignment from Spaln_aa2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG cagtcaaaatggcaatagcacaacaggatgatgatttgctccacatttagTCCAGATCTGTTGGATTTTGAGTCCCTAAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGACAGAACCTGGATTCTGAGGgtaatttgggttaagccagctgatagcaagatagaggctactatagagtt Alignment from Spaln_nt2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG cagtcaaaatggcaatagcacaacaggatgatgatttgctccacatttagTCCAGATCTGTTGGATTTTGAGTCCCTAAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGACAGAACCTGGATTCTGAGGgtaatttgggttaagccagctgatagcaagatagaggctactatagagtt Alignment from Pairagon GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG cagtcaaaatggcaatagcacaacaggatgatgatttgctccacatttagTCCAGATCTGTTGGATTTTGAGTCCCTAAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGACAGAACCTGGATTCTGAGGgtaatttgggttaagccagctgatagcaagatagaggctactatagagtt Alignment from Exonerate_protein2genome cagtcaaaatggcaatagcacaacaggatgatgatttgctccacatttagtccagatctgttggattttgagtccctaaaaaagtgtaatgtccactacaatttgcagaatgctttcaatcttgctgaaaaggaacttggccttagacagaacctggattctgagggtaatttgggttaagccagctgatagcaagatagaggctactatagagtt Alignment from Exonerate_coding2genome cagtcaaaatggcaatagcacaacaggatgatgatttgctccacatttagtccagatctgttggattttgagtccctaaaaaagtgtaatgtccactacaatttgcagaatgctttcaatcttgctgaaaaggaacttggccttagacagaacctggattctgagggtaatttgggttaagccagctgatagcaagatagaggctactatagagtt Alignment from GeneWise GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG cagtcaaaatggcaatagcacaacaggatgatgatttgctccacatttagTCCAGATCTGTTGGATTTTGAGTCCCTAAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGACAGAACCTGGATTCTGAGGgtaatttgggttaagccagctgatagcaagatagaggctactatagagtt #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGA-GAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGACGAGCTAG-ATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGACGAGCTAGATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGACGAGCTAGATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGACGAGCTAGATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGA-GAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGACGAGCTAG-ATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Exonerate_protein2genome ctaacccattctgccactacccccactttccttgtgccttgttcctgcaggcctgggagcgattggagaaatccgaacatgagagacgagctagattgcgcacagagctcattcgtcagaaaaagctagagaaattagctgctcgatttgaccacaaggcttctatgcggaagacttggctcagagagaatcagcgtcttgtttctcaagtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Exonerate_coding2genome ctaacccattctgccactacccccactttccttgtgccttgttcctgcaggcctgggagcgattggagaaatccgaacatgagagacgagctagattgcgcacagagctcattcgtcagaaaaagctagagaaattagctgctcgatttgaccacaaggcttctatgcggaagacttggctcagagagaatcagcgtcttgtttctcaagtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGACGAGCTAGATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAG-AAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctgttactcaagcaaacctgaagttatgacgtctcctctctgttctctagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGCAAGCATC-GGTGCTAGAACAAGCGCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGaggtaaggccatatagttatctatcgcctgaaaaacatacctgtctttttag Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctgttactcaagcaaacctgaagttatgacgtctcctctctgttctctagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGCAAGCATCGGTGCTAGAACAAGCGCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGaggtaaggccatatagttatctatcgcctgtttcctctcaacccctctgcag Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctgttactcaagcaaacctgaagttatgacgtctcctctctgttctctagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGCAAGCATCGGTGCTAGAACAAGCGCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaaggccatatagttatctatcgcctgaaaaacatacctgtctttttag Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAG-AAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctgttactcaagcaaacctgaagttatgacgtctcctctctgttctctagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGCAAGCATC-GGTGCTAGAACAAGCGCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaaggccatatagttatctatcgcctgaaaaacatacctgtctttttag Alignment from Pairagon ------------------------------------------------AGGATGAGCTGAGCGCCCAGGCAGAAGTGAAG-AAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG CTGTTACTCAAGCAAACCTGAAGTTATGACGTCTCCTCTCTGTTCTCTAGGATGAGCTGAGTGCCCAGGCAGAGGTAAGGCAAGCATC-GGTGCTAGAACAAGCGCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaaggccatatagttatctatcgcctgaaaaacatacctgtctttttag Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctgttactcaagcaaacctgaagttatgacgtctcctctctgttctctagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGCAAGCATCGGTGCTAGAACAAGCGCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaaggccatatagttatctatcgcctgaaaaacatacctgtctttttag Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctgttactcaagcaaacctgaagttatgacgtctcctctctgttctctagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGCAAGCATCGGTGCTAGAACAAGCGCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaaggccatatagttatctatcgcctgaaaaacatacctgtctttttag Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctgttactcaagcaaacctgaagttatgacgtctcctctctgttctctagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGCAAGCATCGGTGCTAGAACAAGCGCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaaggccatatagttatctatcgcctgaaaaacatacctgtctttttag #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCT-GCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccatctcttccagtccttgctgaaacgctctttttccagGTCCAACAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTCGCTGCCC-CCGACAGCTGCTACTTGACACAACGGATAAATTTCGGTTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtaagacttgtggtggatggtttcacccgattgctactatgttgggttgg Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccatctcttccagtccttgctgaaacgctctttttccagGTCCAACAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTCGCTGCCCCCGACAGCTGCTACTTGACACAACGGATAAATTTCGGTTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtaagacttgtggtggatggtttcacccgattgctactatgttgggttgg Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtccttgctgaaacgctctttttccagGTCCAACAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTCGCTGCCCCCGACAGCTGCTACTTGACACAACGGATAAATTTCGGTTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagacttgtggtggatggtttcacccgattgctactatgttgggttgg Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtccttgctgaaacgctctttttccagGTCCAACAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTCGCTGCCCCCGACAGCTGCTACTTGACACAACGGATAAATTTCGGTTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagacttgtggtggatggtttcacccgattgctactatgttgggttgg Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCT-GCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtccttgctgaaacgctctttttccagGTCCAACAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTCGCTGCCC-CCGACAGCTGCTACTTGACACAACGGATAAATTTCGGTTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagacttgtggtggatggtttcacccgattgctactatgttgggttgg Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtccttgctgaaacgctctttttccagGTCCAACAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTCGCTGCCCCCGACAGCTGCTACTTGACACAACGGATAAATTTCGGTTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagacttgtggtggatggtttcacccgattgctactatgttgggttgg Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtccttgctgaaacgctctttttccagGTCCAACAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTCGCTGCCCCCGACAGCTGCTACTTGACACAACGGATAAATTTCGGTTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagacttgtggtggatggtttcacccgattgctactatgttgggttgg Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtccttgctgaaacgctctttttccagGTCCAACAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTCGCTGCCCCCGACAGCTGCTACTTGACACAACGGATAAATTTCGGTTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagacttgtggtggatggtttcacccgattgctactatgttgggttgg #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGG-CGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg ggcaggttcaaatgcatgtcaaccctacctaacctcaagctctgtttcagATTTCAGAGAAGCTTTCTCAGCTACAGTCCCGGCCGACAGG-GACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTggtgagtttggttagaacttggacagttaattgaaaacattgtgggacgta Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg ggcaggttcaaatgcatgtcaaccctacctaacctcaagctctgtttcagATTTCAGAGAAGCTTTCTCAGCTACAGTCCCGGCCGACAGGGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTggtgagtttggttagaacttggacagttaattgaaaacattgtgggacgta Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtcaaccctacctaacctcaagctctgtttcagATTTCAGAGAAGCTTTCTCAGCTACAGTCCCGGCCGACAGGGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtgagtttggttagaacttggacagttaattgaaaacattgtgggacgta Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtcaaccctacctaacctcaagctctgtttcagATTTCAGAGAAGCTTTCTCAGCTACAGTCCCGGCCGACAGGGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtgagtttggttagaacttggacagttaattgaaaacattgtgggacgta Alignment from Pairagon ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtcaaccctacctaacctcaagctctgtttcagATTTCAGAGAAGCTTTCTCAGCTACAGTCCCGGCCGACAGGGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtgagtttggttagaacttggacagttaattgaaaacattgtgggacgta Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtcaaccctacctaacctcaagctctgtttcagATTTCAGAGAAGCTTTCTCAGCTACAGTCCCGGCCGACAGGGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtgagtttggttagaacttggacagttaattgaaaacattgtgggacgta Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtcaaccctacctaacctcaagctctgtttcagATTTCAGAGAAGCTTTCTCAGCTACAGTCCCGGCCGACAGGGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtgagtttggttagaacttggacagttaattgaaaacattgtgggacgta Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtcaaccctacctaacctcaagctctgtttcagATTTCAGAGAAGCTTTCTCAGCTACAGTCCCGGCCGACAGGGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtgagtttggttagaacttggacagttaattgaaaacattgtgggacgta #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAA-GAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aatgaacctttaaagtctctatataaccctcatagctgctctccctttagtaTTAGAGGTACTTGTATTTGGGAAAGATGCGGGGATGTCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTCCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCTCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCATGGGAACGAGC-ATTTGGTGCATTAGATAAGCTCACTGCAgtaagtctaccggtacatgttcatagacccttgattgttgtgcttcatct Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aatgaacctttaaagtctctatataaccctcatagctgctctccctttagtaTTAGAGGTACTTGTATTTGGGAAAGATGCGGGGATGTCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTCCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCTCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCATGGGAACGAGCATTTGGTGCATTAGATAAGCTCACTGCAgtaagtctaccggtacatgttcatagacccttgattgttgtgcttcatct Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aatgaacctttaaagtctctatataaccctcatagctgctctccctttagTATTAGAGGTACTTGTATTTGGGAAAGATGCGGGGATGTCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTCCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCTCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCATGGGAACGAGCATTTGGTGCATTAGATAAGCTCACTGCAgtaagtctaccggtacatgttcatagacccttgattgttgtgcttcatct Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAA-GAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aatgaacctttaaagtctctatataaccctcatagctgctctccctttagTATTAGAGGTACTTGTATTTGGGAAAGATGCGGGGATGTCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTCCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCTCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCATGGGAACGAGCATTT-GGTGCATTAGATAAGCTCACTGCAgtaagtctaccggtacatgttcatagacccttgattgttgtgcttcatct Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAA-GAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aatgaacctttaaagtctctatataaccctcatagctgctctccctttagTATTAGAGGTACTTGTATTTGGGAAAGATGCGGGGATGTCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTCCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCTCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCATGGGAACGAGCATTT-GGTGCATTAGATAAGCTCACTGCAgtaagtctaccggtacatgttcatagacccttgattgttgtgcttcatct Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aatgaacctttaaagtctctatataaccctcatagctgctctccctttagTATTAGAGGTACTTGTATTTGGGAAAGATGCGGGGATGTCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTCCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCTCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCATGGGAACGAGCATTTGGTGCATTAGATAAGCTCACTGCAgtaagtctaccggtacatgttcatagacccttgattgttgtgcttcatct Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aatgaacctttaaagtctctatataaccctcatagctgctctccctttagTATTAGAGGTACTTGTATTTGGGAAAGATGCGGGGATGTCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTCCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCTCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCATGGGAACGAGCATTTGGTGCATTAGATAAGCTCACTGCAgtaagtctaccggtacatgttcatagacccttgattgttgtgcttcatct Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG aatgaacctttaaagtctctatataaccctcatagctgctctccctttagTATTAGAGGTACTTGTATTTGGGAAAGATGCGGGGATGTCAGAGGCATGGCTGTGCAGCCAGGCACCAGTGGTGCGAAGTCCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCTCTCATGAAGCGGCATGAGGCCTATCAGAAATCAGCTGTAGCATGGGAACGAGCATTTGGTGCATTAGATAAGCTCACTGCAgtaagtctaccggtacatgttcatagacccttgattgttgtgcttcatct #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGAT-GGCCAGAGAGTTCCTGACACTGCCTGGGATgg atattctattcccattggttcccactcttctgtctctcctgcctctccagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGGGGGAGGAACAAAGGAGGCAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGTAGCCTAGTGGATCGGCCAAAGAG-ACTGGACACTGCATGGGATgggtgagcaaatgatgctaatactggcagatgaccctataatgatgcacctt Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg atattctattcccattggttcccactcttctgtctctcctgcctctccagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGGGGGAGGAACAAAGGAGGCAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGTAGCCTAGTGGATCGGCCAAAGAGACTGGACACTGCATGGGATgggtgagcaaatgatgctaatactggcagatgacccttttttatccaatttg Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctattcccattggttcccactcttctgtctctcctgcctctccagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGGGGGAGGAACAAAGGAGGCAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGTAGCCTAGTGGATCGGCCAAAGAGACTGGACACTGCATGGGATGGgtgagcaaatgatgctaatactggcagatgaccctataatgatgcacctt Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGAT-GGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctattcccattggttcccactcttctgtctctcctgcctctccagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGGGGGAGGAACAAAGGAGGCAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGTAGCCTAGTGGATCGGCCAAAGAG-ACTGGACACTGCATGGGATGGgtgagcaaatgatgctaatactggcagatgaccctataatgatgcacctt Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGAT-GGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctattcccattggttcccactcttctgtctctcctgcctctccagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGGGGGAGGAACAAAGGAGGCAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGTAGCCTAGTGGATCGGCCAAAGAG-ACTGGACACTGCATGGGATGGgtgagcaaatgatgctaatactggcagatgaccctataatgatgcacctt Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctattcccattggttcccactcttctgtctctcctgcctctccagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGGGGGAGGAACAAAGGAGGCAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGTAGCCTAGTGGATCGGCCAAAGAGACTGGACACTGCATGGGATGGgtgagcaaatgatgctaatactggcagatgaccctataatgatgcacctt Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGGGACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGG atattctattcccattggttcccactcttctgtctctcctgcctctccagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGGGGGAGGAACAAAGGAGGCAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGTAGCCTAGTGGATCGGCCAAAGAGACTGGACACTGCATGGGATGGGTGAGCAAATGATGCTAATACTGGCAGATGACCCTATAATGATGCACCTT Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atattctattcccattggttcccactcttctgtctctcctgcctctccagCTGGAAGAGAGGGAAATTGAACGCAAAAGAAAGAGGGAGGGGGAGGAACAAAGGAGGCAACCTTCCACTTCAGAGCCCATGGCTAGTCAGTTAGAAGGTAGCCTAGTGGATCGGCCAAAGAGACTGGACACTGCATGGGATGGgtgagcaaatgatgctaatactggcagatgaccctataatgatgcacctt #### Sptbn2_ID636_31 --> 1 - 0 Original Alignment gACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTC-TGCACGGACACCGACTCCTCACAG aatgatgctaatactggcagatgacccttttttatccaatttgctttaagcAATCAATCAAAACTTCCCCCATTGTCCCAAGCACCATGTGTTAATGTGGTTCTGTACGG-CACTGACTCTTCCCAGgtatgtcatcatgacagacatctgttgaaactcagccagcatttaaatct Alignment from CESAR gACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG aatgatgctaatactggcagatgacccttttttatccaatttgctttaagcAATCAATCAAAACTTCCCCCATTGTCCCAAGCACCATGTGTTAATGTGGTTCTGTACGGCACTGACTCTTCCCAGgtatgtcatcatgacagacatctgttgaaactcagccagcatttaaattt Alignment from Spaln_aa2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG aatgatgctaatactggcagatgacccttttttatccaatttgctttaagCAATCAATCAAAACTTCCCCCATTGTCCCAAGCACCATGTGTTAATGTGGTTCTGTACGGCACTGACTCTTCCCAGgtatgtcatcatgacagacatctgttgaaactcagccagcatttaaatct Alignment from Spaln_nt2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGT-CTGCACGGACACCGACTCCTCACAG aatgatgctaatactggcagatgacccttttttatccaatttgctttaagCAATCAATCAAAACTTCCCCCATTGTCCCAAGCACCATGTGTTAATGTGGTTCTGTACGG-CACTGACTCTTCCCAGgtatgtcatcatgacagacatctgttgaaactcagccagcatttaaatct Alignment from Pairagon GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATG-GGGTCTGCACGGACACCGACTCCTCACAG aatgatgctaatactggcagatgacccttttttatccaatttgctttaagCAATCAATCAAAACTTCCCCCATTGTCCCAAGCACCATGTGTTAATGTGGTTCTGTACGG-CACTGACTCTTCCCAGgtatgtcatcatgacagacatctgttgaaactcagccagcatttaaatct Alignment from Exonerate_protein2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG aatgatgctaatactggcagatgacccttttttatccaatttgctttaagCAATCAATCAAAACTTCCCCCATTGTCCCAAGCACCATGTGTTAATGTGGTTCTGTACGGCACTGACTCTTCCCAGgtatgtcatcatgacagacatctgttgaaactcagccagcatttaaatct Alignment from Exonerate_coding2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGG aatgatgctaatactggcagatgacccttttttatccaatttgctttaagcaatcaatcaaaacttcccccattgtcccaagcaccatgtgttaatgtggttctgtacggcactgactcttcccagGTATGTCATCATGACAGACATCTGTTGAAACTCAGCCAGCATT------T Alignment from GeneWise GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG aatgatgctaatactggcagatgacccttttttatccaatttgctttaagCAATCAATCAAAACTTCCCCCATTGTCCCAAGCACCATGTGTTAATGTGGTTCTGTACGGCACTGACTCTTCCCAGgtatgtcatcatgacagacatctgttgaaactcagccagcatttaaatct #### Ssh3_ID446_10 --> 0 - 2 Original Alignment TTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACag TTAgtaggcggtcttctattcattcttcaatgatctcttccctctgacagGGCACTGAATGGAATGCTCGCCAACC-AGAAGAGCTCCAAAAGAACaggtaccattgcttgctaactgtgagcccttattgacctcccctctcagctt Alignment from CESAR TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag TTAgtaaacggtcttctattcattcttcaatgatctcttccctctgacagGGCACTGAATGGAATGCTCGCCAACCAGAAGAGCTCCAAAAGAACaggtaccattgcttgctaactgtgagcccttattgacctcccctctcagctt Alignment from Spaln_aa2Genome GGGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTT---CAGAAAAACAG AGTAGGCGGTCTTCTATTCATTCTTCAAT--GATCTCTTCCCTCTGACAGGgcactgaatggaatgctcgccaaccagaagagctccaaaagaacaggtaccattgcttgctaactgtgagcccttattgacctcccctctcagctt Alignment from Spaln_nt2Genome TTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtaggcggtcttctattcattcttcaatgatctcttccctctgacagGGCACTGAATGGAATGCTCGCCAACC-AGAAGAGCTCCAAAAGAACAGgtaccattgcttgctaactgtgagcccttattgacctcccctctcagctt Alignment from Pairagon TT-----------------------------------------------GGGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAGTAGGCGGTCTTCTATTCATTCTTCAATGATCTCTTCCCTCTGACAGGGCACTGAATGGAATGCTCGCCAACCAGAAGAGCTCCAAAAGAACAGgtaccattgcttgctaactgtgagcccttattgacctcccctctcagctt Alignment from Exonerate_protein2genome TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtaggcggtcttctattcattcttcaatgatctcttccctctgacagGGCACTGAATGGAATGCTCGCCAACCAGAAGAGCTCCAAAAGAACAGgtaccattgcttgctaactgtgagcccttattgacctcccctctcagctt Alignment from Exonerate_coding2genome ttagtaggcggtcttctattcattcttcaatgatctcttccctctgacagggcactgaatggaatgctcgccaaccagaagagctccaaaagaacaggtaccattgcttgctaactgtgagcccttattgacctcccctctcagctt Alignment from GeneWise TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtaggcggtcttctattcattcttcaatgatctcttccctctgacagGGCACTGAATGGAATGCTCGCCAACCAGAAGAGCTCCAAAAGAACAGgtaccattgcttgctaactgtgagcccttattgacctcccctctcagctt #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGAC-AACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC tagaccttcagtccacttagacattcagccttaactataactcccttcagCTCCATCGGGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGTCTTTATTGATCAACCAGA-GTTGCTTCTTATGGCCCATCAGGATCAGACATCTCGAATCTACCCATACCTCTACTTAgtaaacggtcttctattcattcttcttttctcccttctcttttacagGGC Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC tagaccttcagtccacttagacattcagccttaactataactcccttcagCTCCATCGGGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGTCTTTATTGATCAACCAGAGTTGCTTCTTATGGCCCATCAGGATCAGACATCTCGAATCTACCCATACCTCTACTTAgtaaacggtcttctattcattcttcaatgatctcttccctctgacagGGC Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATG tagaccttcagtccacttagacattcagccttaactataactcccttcagCTCCATCGGGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGTCTTTATTGATCAACCAGAGTTGCTTCTTATGgcccatcaggatcagacatctcgaatctacccatacctctacttagtaaacggtcttctattcattcttcttttctcccttctcttttacagggc Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC tagaccttcagtccacttagacattcagccttaactataactcccttcagCTCCATCGGGCCTTAGAACTACACCTTGGATGTCCTTT------ATATCGTGTCTTTATTGATCAACCAGAGTTGCTTCTTATGGCCCATCAGGATCAGACATCTCGAATCTACCCATACCTCTACTTAgtaaacggtcttctattcattcttcttttctcccttctcttttacagGGC Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGA-CAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC tagaccttcagtccacttagacattcagccttaactataactcccttcagCTCCATCGGGCCTTAGAACTACACCTTGGATGTCCTTT------ATATCGTGTCTTTATTGATCAACCAGA-GTTGCTTCTTATGGCCCATCAGGATCAGACATCTCGAATCTACCCATACCTCTACTTAgtaaacggtcttctattcattcttcttttctcccttctcttttacagGGC Alignment from Exonerate_protein2genome GGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGGGC tagaccttcagtccacttagacattcagccttaactataactcccttcagctccatcgggccttagaactacaccttggatgtcctttatatcgtgtctttattgATCAACCAGAGTTGCTTCTTATGGCCCATCAGGATCAGACATCTCGAATCTACCCATACCTCTACTTAGTAAACGGTCTTCTATTCATTCTTCTTTTCTCCCTTCTCTTTTACAGGGC Alignment from Exonerate_coding2genome TGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAGATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC TAGACCTTCAGTCCACTTAGACATTCAGCCTTAACTATAACTCCCTTCAGCTCCATCGGGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGTCTTTATTGATCAACCAGAGTTGCTTCTTATGGCCCATCAGGATCAGACATCTCGAATCTACCCATACCTCTACTTAgtaaacggtcttctattcattcttcttttctcccttctcttttacagGGC Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGC tagaccttcagtccacttagacattcagccttaactataactcccttcagCTCCATCGGGCCTTAGAACTACACCTTGGATGTCCTTTA------TATCGTGTCTTTATTGATCAACCAGAGTTGCTTCTTATGGCCCATCAGGATCAGACATCTCGAATCTACCCATACCTCTACTTAgtaaacggtcttctattcattcttcttttctcccttctcttttacagGGC #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCT-GAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccaggGCCTCAGAGCAAGAGAAGACA---------------GTACGAATTGT-GCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccaggGCCTCAGAGCAAGAGAAGACAGTACGAATTGTG---------------CAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGACAGTACGAATTGTG---------------CAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGA--------------CAGTACGAATTGT-GCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGACAGTAC--------------GAATTGT-GCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGACAGTACGAATTGTG---------------CAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Exonerate_coding2genome ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagggcctcagagcaagagaagacagtacgaattgtgcaagtattagataccagtgatctagaaagtgttacctccaaagaggtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGACAGTACGAATTGTG---------------CAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCT------------GAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAG-ATGCAAAAGGACCCCCAGGCTCTGAGCga caaacacaaattagggctaaagtcctccgaattgtctttttttctcctagCAAGCAGCAGACAAATACCAGCGATGCATGATGGCACAGTACAACAGACATGACAGGTCACATGACAGCCCTGAGGAAGTTACA------------------CTTGAGGTTCAGCAAATAATGAGTGACCCATCCATGAGACTCATACTGGAGCAACATGCAAAAAG-CCCCCAGGCTTTGAGTgagtaccataaacaacaatggaagaatggatgggatagaaatttttgtttgc Alignment from CESAR GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGAT------------AGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga caaacacaaattagggctaaagtcctccgaattgtctttttttctcctagCAAGCAGCAGACAAATACCAGCGATGCATGATGGCACAGTACAACAGACATGACAGGTCACATGACAGCCCTGAGGAAGTTACA------------------CTTGAGGTTCAGCAAATAATGAGTGACCCATCCATGAGACTCATACTGGAGCAACATGCAAAAAGCCCCCAGGCTTTGAGTgagtaccataaacaacaatggaagaatggatgggatagaaatttttgtttgc Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA caaacacaaattagggctaaagtcctccgaattgtctttttttctcctagCAAGCAGCAGACAAATACCAGCGATGCATGATGGCACAGTACAACAGACATGACAGGTCACATGACAGCCCTGAGGAAGTTACA------CTTGAGGTTCAGCAAATAATGAGTGACCCATCCATGAGACTCATACTGGAGCAACATGCAAAAAGCCCCCAGGCTTTGAGTGAgtaccataaacaacaatggaagaatggatgggatagaaatttttgtttgc Alignment from Spaln_nt2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAG-ATGCAAAAGGACCCCCAGGCTCTGAGCGA caaacacaaattagggctaaagtcctccgaattgtctttttttctcctagCAAGCAGCAGACAAATACCAGCGATGCATGATGGCACAGTACAACAGACATGACAGGTCACATGA----CAGCCCTGAGGAA--GTTACACTTGAGGTTCAGCAAATAATGAGTGACCCATCCATGAGACTCATACTGGAGCAACATGCAAAAAG-CCCCCAGGCTTTGAGTGAgtaccataaacaacaatggaagaatggatgggatagaaatttttgtttgc Alignment from Pairagon GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAG------------ACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAG-ATGCAAAAGGACCCCCAGGCTCTGAGCGA caaacacaaattagggctaaagtcctccgaattgtctttttttctcctagCAAGCAGCAGACAAATACCAGCGATGCATGATGGCACAGTACAACAGACATGACAGGTCACATGACAGCCCTGAGGAAGT------------------TACACTTGAGGTTCAGCAAATAATGAGTGACCCATCCATGAGACTCATACTGGAGCAACATGCAAAAAG-CCCCCAGGCTTTGAGTGAgtaccataaacaacaatggaagaatggatgggatagaaatttttgtttgc Alignment from Exonerate_protein2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA caaacacaaattagggctaaagtcctccgaattgtctttttttctcctagCAAGCAGCAGACAAATACCAGCGATGCATGATGGCACAGTACAACAGACATGACAGGTCACATGACAGCCCTGAGGAAGTTACACTT------GAGGTTCAGCAAATAATGAGTGACCCATCCATGAGACTCATACTGGAGCAACATGCAAAAAGCCCCCAGGCTTTGAGTGAgtaccataaacaacaatggaagaatggatgggatagaaatttttgtttgc Alignment from Exonerate_coding2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA caaacacaaattagggctaaagtcctccgaattgtctttttttctcctagCAAGCAGCAGACAAATACCAGCGATGCATGATGGCACAGTACAACAGACATGACAGGTCACATGACAGCCCTGAGGAAGTTACACTT------GAGGTTCAGCAAATAATGAGTGACCCATCCATGAGACTCATACTGGAGCAACATGCAAAAAGCCCCCAGGCTTTGAGTGAgtaccataaacaacaatggaagaatggatgggatagaaatttttgtttgc Alignment from GeneWise GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA caaacacaaattagggctaaagtcctccgaattgtctttttttctcctagCAAGCAGCAGACAAATACCAGCGATGCATGATGGCACAGTACAACAGACATGACAGGTCACATGACAGCCCTGAGGAAGTTACACTT------GAGGTTCAGCAAATAATGAGTGACCCATCCATGAGACTCATACTGGAGCAACATGCAAAAAGCCCCCAGGCTTTGAGTGAgtaccataaacaacaatggaagaatggatgggatagaaatttttgtttgc #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTA-GACCTGGACTCCAGCTGTAAG ttttctccattatatttcgacaaatcgttgagccagatgacccaccctagacAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATGCAT------CAAAAGGCATTACGACC-AGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gtttctccattatatttcgacaaatcgttgagccagatgacccaccctagacAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTACGACCAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ttttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTACGACCAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ttttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATGCAT------CAAAAGGCATTACGACCAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ttttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATGCAT------CAAAAGGCATTACGACCAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ttttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTACGACCAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ttttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTACGACCAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ttttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTACGACCAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGA-CAGTGCAGTGAATTTACCCTCATGGCCag ggggtacaaagatgactgaccctatcaaccctcaatcactcctgttccagAATGGAATCCCAACAACCAAA---CCTCTTCATGCAGCCCGTCCAGTGCA-TGAACTTACCCTTATGGCTcggtatgatgtagctgtcttaatgggctgactttttgtaatatgtagagtca Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag ggggtacaaagatgactgaccctatcaaccctcaatcactcctgttccagAATGGAATCCCAACAACCAAACCT---CTTCATGCAGCCCGTCCAGTGCATGAACTTACCCTTATGGCTcggtatgatgtagctgtcttaatgggctgactttttgtaatatgtagagtca Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggtacaaagatgactgaccctatcaaccctcaatcactcctgttccagAATGGAATCCCAACAACCAAACCT---CTTCATGCAGCCCGTCCAGTGCATGAACTTACCCTTATGGCTCGgtatgatgtagctgtcttaatgggctgactttttgtaatatgtagagtca Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGAC-AGTGCAGTGAATTTACCCTCATGGCCAG ggggtacaaagatgactgaccctatcaaccctcaatcactcctgttccagAATGGAATCCCAACAACCAAAC---CTCTTCATGCAGCCCGTCCAGTGCA-TGAACTTACCCTTATGGCTCGgtatgatgtagctgtcttaatgggctgactttttgtaatatgtagagtca Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCG-ACAGTGCAGTGAATTTACCCTCATGGCCAG ggggtacaaagatgactgaccctatcaaccctcaatcactcctgttccagAATGGAATCCCAACAACCAAAC---CTCTTCATGCAGCCCGTCCAGTGCA-TGAACTTACCCTTATGGCTCGgtatgatgtagctgtcttaatgggctgactttttgtaatatgtagagtca Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACC ggggtacaaagatgactgaccctatcaaccctcaatcactcctgttccagaatggaatcccaacaaccaaacctcttcatgcagcccgtccagtgcatgaacttacccttatggctcggtatgatgtagctgtcttaatgggctgACTTTTTGTAATATGTAGAGTCA Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACC ggggtacaaagatgactgaccctatcaaccctcaatcactcctgttccagaatggaatcccaacaaccaaacctcttcatgcagcccgtccagtgcatgaacttacccttatggctcggtatgatgtagctgtcttaatgggctgACTTTTTGTAATATGTAGAGTCA Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggtacaaagatgactgaccctatcaaccctcaatcactcctgttccagAATGGAATCCCAACAACCAAACCT---CTTCATGCAGCCCGTCCAGTGCATGAACTTACCCTTATGGCTCGgtatgatgtagctgtcttaatgggctgactttttgtaatatgtagagtca #### Stx5a_ID2331_3 --> 1 - 1 Original Alignment gCGCATTGGGAAAGATCTCAGCAATACA-TTTGCCAAGCTGGAGAAGCTAACAATCt catggtgtcacctcactttttcacacaccattctgctcctctggttccagaCGCATAGGGAAAGATCTGAGTAATACACTTTGCCAAAC-TGAGAAATTAACAATCtgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from CESAR gCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt catggtgtcacctcactttttcacacaccattctgctcctctggttccagaCGCATAGGGAAAGATCTGAGTAATACACTTTGCCAAACTGAGAAATTAACAATCtgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Spaln_aa2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACACTTTGCCAAACTGAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Spaln_nt2Genome GCGCATTGGGAAAGATCTCAGCAATACA-TTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACACTTTGCCAAACT-GAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Pairagon GCGCATTGGGAAAGATCTCAGCAATACA-TTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACACTTTGCCAAACT-GAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Exonerate_protein2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACACTTTGCCAAACTGAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Exonerate_coding2genome catggtgtcacctcactttttcacacaccattctgctcctctggttccagacgcatagggaaagatctgagtaatacactttgccaaactgagaaattaacaatctgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from GeneWise GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACACTTTGCCAAACTGAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAAC-CGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgcacaaatgttcacagagccttggaaccagtgtctcttctgaacagAATTTAAAACAGCAGAGGAATCCGA---GCCC-GCTA---TGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTggtaggattaccttatttatgtatagtgggtctgacctgaccagcttcaaa Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgcacaaatgttcacagagccttggaaccagtgtctcttctgaacagAATTTAAAACAGCAGAGGAATCCGAGCCCGCTA------TGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTggtaggattaccttatttatgtatagtgggtctgacctgaccagcttcaaa Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttggaaccagtgtctcttctgaacagAATTTAAAACAGCAGAGGAATCCGAGCCCG------CTATGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaggattaccttatttatgtatagtgggtctgacctgaccagcttcaaa Alignment from Spaln_nt2Genome AGAATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttggaaccagtgtctcttctgaacAGAATTTAAAACAGCAGAGGAA---TCCGAGCCCGCTAT---GGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaggattaccttatttatgtatagtgggtctgacctgaccagcttcaaa Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCA----------GGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttggaaccagtgtctcttctgaacagAATTTAAAACAGCAGAGGAA----------------TCCGAGCCCGCTATGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaggattaccttatttatgtatagtgggtctgacctgaccagcttcaaa Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttggaaccagtgtctcttctgaacagAATTTAAAACAGCAGAGGAATCCGAGCCCGCTATGG------GCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaggattaccttatttatgtatagtgggtctgacctgaccagcttcaaa Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttggaaccagtgtctcttctgaacagAATTTAAAACAGCAGAGGAATCCGAGCCCGCTATGG------GCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaggattaccttatttatgtatagtgggtctgacctgaccagcttcaaa Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttggaaccagtgtctcttctgaacagAATTTAAAACAGCAGAGGAATCCGAGCCCGCTATGG------GCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaggattaccttatttatgtatagtgggtctgacctgaccagcttcaaa #### Stx5a_ID2336_8 --> 2 - 0 Original Alignment gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGAC-GTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaaacttccacaaagtgccagaagcttgcatgtgttctgttacaggaGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGAGATCGTAGCAA-TGATATGATGGACCCTAGAACAAGCCAACAGCTGCAGGTCATTGATGAGCAGgtaaggtacaccacattgtgaagctgacctataaccagggttcccttagg Alignment from CESAR gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaaacttccacaaagtgccagaagcttgcatgtgttctgttacaggaGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGAGATCGTAGCAATGATATGATGGACCCTAGAACAAGCCAACAGCTGCAGGTCATTGATGAGCAGgtaaggtacaccacattgtgaagctgacctataaccagggttcccttagg Alignment from Spaln_aa2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaaacttccacaaagtgccagaagcttgcatgtgttctgttacagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGAGATCGTAGCAATGATATGATGGACCCTAGAACAAGCCAACAGCTGCAGGTCATTGATGAGCAGgtaaggtacaccacattgtgaagctgacctataaccagggttcccttagg Alignment from Spaln_nt2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGA-CGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaaacttccacaaagtgccagaagcttgcatgtgttctgttacagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGAGATCGTAGC-AATGATATGATGGACCCTAGAACAAGCCAACAGCTGCAGGTCATTGATGAGCAGgtaaggtacaccacattgtgaagctgacctataaccagggttcccttagg Alignment from Pairagon GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGA-CGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaaacttccacaaagtgccagaagcttgcatgtgttctgttacagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGAGATCGTAGC-AATGATATGATGGACCCTAGAACAAGCCAACAGCTGCAGGTCATTGATGAGCAGgtaaggtacaccacattgtgaagctgacctataaccagggttcccttagg Alignment from Exonerate_protein2genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaaacttccacaaagtgccagaagcttgcatgtgttctgttacagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGAGATCGTAGCAATGATATGATGGACCCTAGAACAAGCCAACAGCTGCAGGTCATTGATGAGCAGgtaaggtacaccacattgtgaagctgacctataaccagggttcccttagg Alignment from Exonerate_coding2genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaaacttccacaaagtgccagaagcttgcatgtgttctgttacagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGAGATCGTAGCAATGATATGATGGACCCTAGAACAAGCCAACAGCTGCAGGTCATTGATGAGCAGgtaaggtacaccacattgtgaagctgacctataaccagggttcccttagg Alignment from GeneWise GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaaacttccacaaagtgccagaagcttgcatgtgttctgttacagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGAGATCGTAGCAATGATATGATGGACCCTAGAACAAGCCAACAGCTGCAGGTCATTGATGAGCAGgtaaggtacaccacattgtgaagctgacctataaccagggttcccttagg #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTC-CTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaatgataatattattctatatttcagGTCCTATACATACAGGCCTTTGTTCCTTGTCT-CCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtgagaagggtccagcagttagggcaaggcttctaaattgccatgctggc Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaatgataatattattctatatttcagGTCCTATACATACAGGCCTTTGTTCCTTGTCTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtgagaagggtccagcagttagggcaaggcttctaaattgccatgctggc Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaatgataatattattctatatttcagGTCCTATACATACAGGCCTTTGTTCCTTGTCTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtgagaagggtccagcagttagggcaaggcttctaaattgccatgctggc Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGT-CCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaatgataatattattctatatttcagGTCCTATACATACAGGCCTTTGTTCCTTGTC-TCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtgagaagggtccagcagttagggcaaggcttctaaattgccatgctggc Alignment from Pairagon GTCCTGTACATCCAGGCCTTTG-TCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaatgataatattattctatatttcagGTCCTATACATACAGGCCTTTGTTCCTTGTC-TCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtgagaagggtccagcagttagggcaaggcttctaaattgccatgctggc Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaatgataatattattctatatttcagGTCCTATACATACAGGCCTTTGTTCCTTGTCTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtgagaagggtccagcagttagggcaaggcttctaaattgccatgctggc Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaatgataatattattctatatttcagGTCCTATACATACAGGCCTTTGTTCCTTGTCTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtgagaagggtccagcagttagggcaaggcttctaaattgccatgctggc Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG agacagaaattggcagtacccttaaatgataatattattctatatttcagGTCCTATACATACAGGCCTTTGTTCCTTGTCTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAAgtgagaagggtccagcagttagggcaaggcttctaaattgccatgctggc #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATCTCCTGGCTC-TTCCACTGCCGCATCGTCt gacctacatgtgaggcttagttgactctaaaatatgtcatctcattgtagATGGAGCGTAGTCCCAACATTCCCTGGCTCCTTCC-TTGCAGGATTGTCtgtgcgtgtagcttcatacaccagaggaattttgttaatgggagatcatcc Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt gacctacatgtgaggcttagttgactctaaaatatgtcatctcattgtagATGGAGCGTAGTCCCAACATTCCCTGGCTCCTTCCTTGCAGGATTGTCtgtgcgtgtagcttcatacaccagaggaattttgttaatgggagatcatcc Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgactctaaaatatgtcatctcattgtagATGGAGCGTAGTCCCAACATTCCCTGGCTCCTTCCTTGCAGGATTGTCTgtgcgtgtagcttcatacaccagaggaattttgttaatgggagatcatcc Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgactctaaaatatgtcatctcattgtagATGGAGCGTAGTCCCAACATTCCCTGGCTCCTTCCTTGCAGGATTGTCTgtgcgtgtagcttcatacaccagaggaattttgttaatgggagatcatcc Alignment from Pairagon ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgactctaaaatatgtcatctcattgtagATGGAGCGTAGTCCCAACATTCCCTGGCTCCTTCCTTGCAGGATTGTCTgtgcgtgtagcttcatacaccagaggaattttgttaatgggagatcatcc Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgactctaaaatatgtcatctcattgtagATGGAGCGTAGTCCCAACATTCCCTGGCTCCTTCCTTGCAGGATTGTCTgtgcgtgtagcttcatacaccagaggaattttgttaatgggagatcatcc Alignment from Exonerate_coding2genome gacctacatgtgaggcttagttgactctaaaatatgtcatctcattgtagatggagcgtagtcccaacattccctggctccttccttgcaggattgtctgtgcgtgtagcttcatacaccagaggaattttgttaatgggagatcatcc Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgactctaaaatatgtcatctcattgtagATGGAGCGTAGTCCCAACATTCCCTGGCTCCTTCCTTGCAGGATTGTCTgtgcgtgtagcttcatacaccagaggaattttgttaatgggagatcatcc #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATC-CTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaaacataaggtcaagaagccttatcatttcaagtccttttccccatagctCTCATGTTTCTCCTGGGCATCCTGGACTTCCTTTTTGTCAGCCATACTTATCACAGGGTCCGTGACTC-TGGTACTTCAGTGCAGTTGGTATTTGGCTTTGTTgtatgatcaggcaagaggtaacaagccagctgttcttcgtgcccctctat Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaaacataaggtcaagaagccttatcatttcaagtccttttccccatagctCTCATGTTTCTCCTGGGCATCCTGGACTTCCTTTTTGTCAGCCATACTTATCACAGGGTCCGTGACTCTGGTACTTCAGTGCAGTTGGTATTTGGCTTTGTTgtatgatcaggcaagaggtaacaagccagctgttcttcgtgcccctctat Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaaacataaggtcaagaagccttatcatttcaagtccttttccccatagCTCTCATGTTTCTCCTGGGCATCCTGGACTTCCTTTTTGTCAGCCATACTTATCACAGGGTCCGTGACTCTGGTACTTCAGTGCAGTTGGTATTTGGCTTTGTTgtatgatcaggcaagaggtaacaagccagctgttcttcgtgcccctctat Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCC-TGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaaacataaggtcaagaagccttatcatttcaagtccttttccccatagCTCTCATGTTTCTCCTGGGCATCCTGGACTTCCTTTTTGTCAGCCATACTTATCACAGGGTCCGTGACTC-TGGTACTTCAGTGCAGTTGGTATTTGGCTTTGTTgtatgatcaggcaagaggtaacaagccagctgttcttcgtgcccctctat Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCC-TGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaaacataaggtcaagaagccttatcatttcaagtccttttccccatagCTCTCATGTTTCTCCTGGGCATCCTGGACTTCCTTTTTGTCAGCCATACTTATCACAGGGTCCGTGACTC-TGGTACTTCAGTGCAGTTGGTATTTGGCTTTGTTgtatgatcaggcaagaggtaacaagccagctgttcttcgtgcccctctat Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaaacataaggtcaagaagccttatcatttcaagtccttttccccatagCTCTCATGTTTCTCCTGGGCATCCTGGACTTCCTTTTTGTCAGCCATACTTATCACAGGGTCCGTGACTCTGGTACTTCAGTGCAGTTGGTATTTGGCTTTGTTgtatgatcaggcaagaggtaacaagccagctgttcttcgtgcccctctat Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaaacataaggtcaagaagccttatcatttcaagtccttttccccatagCTCTCATGTTTCTCCTGGGCATCCTGGACTTCCTTTTTGTCAGCCATACTTATCACAGGGTCCGTGACTCTGGTACTTCAGTGCAGTTGGTATTTGGCTTTGTTgtatgatcaggcaagaggtaacaagccagctgttcttcgtgcccctctat Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaaacataaggtcaagaagccttatcatttcaagtccttttccccatagCTCTCATGTTTCTCCTGGGCATCCTGGACTTCCTTTTTGTCAGCCATACTTATCACAGGGTCCGTGACTCTGGTACTTCAGTGCAGTTGGTATTTGGCTTTGTTgtatgatcaggcaagaggtaacaagccagctgttcttcgtgcccctctat #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACCATCTTC-ATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg gctctcttggtccattatggttcagatcctttttcttcaatgttttctagTATGCCATTCTGATGACGATGGCACTCACTATTTTCCATCA-GTATGTGCTGCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTATTTACGggtaggtactcccagacaatctagaggtggttcatggttaatctgcaggag Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg gctctcttggtccattatggttcagatcctttttcttcaatgttttctagTATGCCATTCTGATGACGATGGCACTCACTATTTTCCATCAGTATGTGCTGCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTATTTACGggtaggtactcccagacaatctagaggtggttcatggttaatctgcaggag Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctctcttggtccattatggttcagatcctttttcttcaatgttttctagTATGCCATTCTGATGACGATGGCACTCACTATTTTCCATCAGTATGTGCTGCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTATTTACGGgtaggtactcccagacaatctagaggtggttcatggttaatctgcaggag Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctctcttggtccattatggttcagatcctttttcttcaatgttttctagTATGCCATTCTGATGACGATGGCACTCACTATTTTCCATCAGTATGTGCTGCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTATTTACGGgtaggtactcccagacaatctagaggtggttcatggttaatctgcaggag Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctctcttggtccattatggttcagatcctttttcttcaatgttttctagTATGCCATTCTGATGACGATGGCACTCACTATTTTCCATCAGTATGTGCTGCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTATTTACGGgtaggtactcccagacaatctagaggtggttcatggttaatctgcaggag Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctctcttggtccattatggttcagatcctttttcttcaatgttttctagTATGCCATTCTGATGACGATGGCACTCACTATTTTCCATCAGTATGTGCTGCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTATTTACGGgtaggtactcccagacaatctagaggtggttcatggttaatctgcaggag Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctctcttggtccattatggttcagatcctttttcttcaatgttttctagTATGCCATTCTGATGACGATGGCACTCACTATTTTCCATCAGTATGTGCTGCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTATTTACGGgtaggtactcccagacaatctagaggtggttcatggttaatctgcaggag Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctctcttggtccattatggttcagatcctttttcttcaatgttttctagTATGCCATTCTGATGACGATGGCACTCACTATTTTCCATCAGTATGTGCTGCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATAAGGCTGTATACATGCTCTACACAGAGCTATTTACGGgtaggtactcccagacaatctagaggtggttcatggttaatctgcaggag #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTG-CGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gcaatactaaactggtagctaggcctgacagttattgttttggattttagccTTCCCCCCAATGCCAGTACCGCCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGCTGTG-TCTAGAAGGTCATGAGCGGCAAGACCTGGAGGCTTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGgggtgagtatgcaagttcagctgaacacttccctgttgtctgaccaactatt Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gcaatactaaactggtagctaggcctgacagttattgttttggattttagccTTCCCCCCAATGCCAGTACCGCCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGCTGTGTCTAGAAGGTCATGAGCGGCAAGACCTGGAGGCTTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGgggtgagtatgcaagttcagctgaacacttccctgttgtctgaccaactatt Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gcaatactaaactggtagctaggcctgacagttattgttttggattttagCCTTCCCCCCAATGCCAGTACCGCCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGCTGTGTCTAGAAGGTCATGAGCGGCAAGACCTGGAGGCTTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcaagttcagctgaacacttccctgttgtctgaccaactatt Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gcaatactaaactggtagctaggcctgacagttattgttttggattttagCCTTCCCCCCAATGCCAGTACCGCCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGCTGTGTCTAGAAGGTCATGAGCGGCAAGACCTGGAGGCTTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcaagttcagctgaacacttccctgttgtctgaccaactatt Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gcaatactaaactggtagctaggcctgacagttattgttttggattttagCCTTCCCCCCAATGCCAGTACCGCCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGCTGTGTCTAGAAGGTCATGAGCGGCAAGACCTGGAGGCTTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcaagttcagctgaacacttccctgttgtctgaccaactatt Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gcaatactaaactggtagctaggcctgacagttattgttttggattttagCCTTCCCCCCAATGCCAGTACCGCCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGCTGTGTCTAGAAGGTCATGAGCGGCAAGACCTGGAGGCTTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcaagttcagctgaacacttccctgttgtctgaccaactatt Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gcaatactaaactggtagctaggcctgacagttattgttttggattttagCCTTCCCCCCAATGCCAGTACCGCCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGCTGTGTCTAGAAGGTCATGAGCGGCAAGACCTGGAGGCTTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcaagttcagctgaacacttccctgttgtctgaccaactatt Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gcaatactaaactggtagctaggcctgacagttattgttttggattttagCCTTCCCCCCAATGCCAGTACCGCCTGCTGGATTTGCTGGTCTAACACCAGAGGAGTTGCTGTGTCTAGAAGGTCATGAGCGGCAAGACCTGGAGGCTTGTTTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcaagttcagctgaacacttccctgttgtctgaccaactatt #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTC-TCAGCCTTCCTGCATGCCCTGCGGTTGCACtg tagaatgacataggtctacaatgctcttctggtgtacctgcactttgcagagCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTTGCAGCTGTAGTACTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTGTCGCAATTCTGTTGGTAATGGAGGGGCTTCTTAGCAT-CTTACATGCTCTGCGGTTGCATtggtatgagtgatatcaacatgacaggatgggacagggaccataggttgatt Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg tagaatgacataggtctacaatgctcttctggtgtacctgcactttgcagagCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTTGCAGCTGTAGTACTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTGTCGCAATTCTGTTGGTAATGGAGGGGCTTCTTAGCATCTTACATGCTCTGCGGTTGCATtggtatgagtgatatcaacatgacaggatgggacagggaccataggttgatt Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG tagaatgacataggtctacaatgctcttctggtgtacctgcactttgcagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTTGCAGCTGTAGTACTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTGTCGCAATTCTGTTGGTAATGGAGGGGCTTCTTAGCATCTTACATGCTCTGCGGTTGCATTGgtatgagtgatatcaacatgacaggatgggacagggaccataggttgatt Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCT-CTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG tagaatgacataggtctacaatgctcttctggtgtacctgcactttgcagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTTGCAGCTGTAGTACTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTGTCGCAATTCTGTTGGTAATGGAGGGGCTTCTTAG-CATCTTACATGCTCTGCGGTTGCATTGgtatgagtgatatcaacatgacaggatgggacagggaccataggttgatt Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG tagaatgacataggtctacaatgctcttctggtgtacctgcactttgcagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTTGCAGCTGTAGTACTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTGTCGCAATTCTGTTGGTAATGGAGGGGCTTCTTAGCATCTTACATGCTCTGCGGTTGCATTGgtatgagtgatatcaacatgacaggatgggacagggaccataggttgatt Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG tagaatgacataggtctacaatgctcttctggtgtacctgcactttgcagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTTGCAGCTGTAGTACTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTGTCGCAATTCTGTTGGTAATGGAGGGGCTTCTTAGCATCTTACATGCTCTGCGGTTGCATTGgtatgagtgatatcaacatgacaggatgggacagggaccataggttgatt Alignment from Exonerate_coding2genome tagaatgacataggtctacaatgctcttctggtgtacctgcactttgcagagctgtcggaggtcctttgggcaatggtgatgcacataggccttggcatgggccgagagattggagttgcagctgtagtactggtccctgtgtttgctgcctttgctgtattaagtgtcgcaattctgttggtaatggaggggcttcttagcatcttacatgctctgcggttgcattggtatgagtgatatcaacatgacaggatgggacagggaccataggttgatt Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGGGTGGAG tagaatgacataggtctacaatgctcttctggtgtacctgcactttgcagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGAGTTGCAGCTGTAGTACTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAAGTGTCGCAATTCTGTTGGTAATGGAGGGGCTTCTTAGCATCTTACATGCTCTGCGGTTGCATTGGTATGAGtgatatcaacatgacaggatgggacagggaccataggttgatt #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATC-TTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc tggtggacagatgttcaacttgtgagctaaataattatttttatgtttagTTTGTCCCCTCTGAGATCCTTCA-GCACCGAGCAATCCACATCATTGAGTTTTGTCTTGGTTGCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCAcgtagcagacataaattgtgtaacaacataagaaattcccgatggatagca Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc tggtggacagatgttcaacttgtgagctaaataattatttttatgtttagTTTGTCCCCTCTGAGATCCTTCAGCACCGAGCAATCCACATCATTGAGTTTTGTCTTGGTTGCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCAcgtagcagacataaattgtgtaacaacataagaaattcccgatggatagca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC tggtggacagatgttcaacttgtgagctaaataattatttttatgtttagTTTGTCCCCTCTGAGATCCTTCAGCACCGAGCAATCCACATCATTGAGTTTTGTCTTGGTTGCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtagcagacataaattgtgtaacaacataagaaattcccgatggatagca Alignment from Spaln_nt2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC tggtggacagatgttcaacttgtgagctaaataattatttttatgtttagTTTGTCCCCTCTGAGATCCTTCAGCACCGAGCAATCCACATCATTGAGTTTTGTCTTGGTTGCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtagcagacataaattgtgtaacaacataagaaattcccgatggatagca Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC tggtggacagatgttcaacttgtgagctaaataattatttttatgtttagTTTGTCCCCTCTGAGATCCTTCAGCACCGAGCAATCCACATCATTGAGTTTTGTCTTGGTTGCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtagcagacataaattgtgtaacaacataagaaattcccgatggatagca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC tggtggacagatgttcaacttgtgagctaaataattatttttatgtttagTTTGTCCCCTCTGAGATCCTTCAGCACCGAGCAATCCACATCATTGAGTTTTGTCTTGGTTGCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtagcagacataaattgtgtaacaacataagaaattcccgatggatagca Alignment from Exonerate_coding2genome tggtggacagatgttcaacttgtgagctaaataattatttttatgtttagtttgtcccctctgagatccttcagcaccgagcaatccacatcattgagttttgtcttggttgcatctcaaacacagcatcctacctgcgtctttgggccttgagcctggcccatgcacgtagcagacataaattgtgtaacaacataagaaattcccgatggatagca Alignment from GeneWise TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC tggtggacagatgttcaacttgtgagctaaataattatttttatgtttagTTTGTCCCCTCTGAGATCCTTCAGCACCGAGCAATCCACATCATTGAGTTTTGTCTTGGTTGCATCTCAAACACAGCATCCTACCTGCGTCTTTGGGCCTTGAGCCTGGCCCATGCACgtagcagacataaattgtgtaacaacataagaaattcccgatggatagca #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAAC-AGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtatggatatagtgttgaggtcttctactttcaccctccagGATGAGGACACAGAGAAACTACTTTCTTCCCCAGATGCAACAACCTTGGAGAATCAGCTGGA-CCCTGATAAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagcgaccaaggattgcaaagactcgcctgccagccagattagttgct Alignment from CESAR GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtaagtatatagtgttgaggtcttctactttcaccctccagGATGAGGACACAGAGAAACTACTTTCTTCCCCAGATGCAACAACCTTGGAGAATCAGCTGGACCCTGATAAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagcgaccaaggattgcaaagactcgcctgccagccagattagttgct Alignment from Spaln_aa2Genome GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtatggatatagtgttgaggtcttctactttcaccctccagGATGAGGACACAGAGAAACTACTTTCTTCCCCAGATGCAACAACCTTGGAGAATCAGCTGGACCCTGATAAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagcgaccaaggattgcaaagactcgcctgccagccagattagttgct Alignment from Spaln_nt2Genome GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAA-CAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtatggatatagtgttgaggtcttctactttcaccctccagGATGAGGACACAGAGAAACTACTTTCTTCCCCAGATGCAACAACCTTGGAGAATCAGCTGGA-CCCTGATAAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagcgaccaaggattgcaaagactcgcctgccagccagattagttgct Alignment from Pairagon GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAA-CAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtatggatatagtgttgaggtcttctactttcaccctccagGATGAGGACACAGAGAAACTACTTTCTTCCCCAGATGCAACAACCTTGGAGAATCAGCTGGA-CCCTGATAAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagcgaccaaggattgcaaagactcgcctgccagccagattagttgct Alignment from Exonerate_protein2genome GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtatggatatagtgttgaggtcttctactttcaccctccagGATGAGGACACAGAGAAACTACTTTCTTCCCCAGATGCAACAACCTTGGAGAATCAGCTGGACCCTGATAAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagcgaccaaggattgcaaagactcgcctgccagccagattagttgct Alignment from Exonerate_coding2genome ggccaacaagtatggatatagtgttgaggtcttctactttcaccctccaggatgaggacacagagaaactactttcttccccagatgcaacaaccttggagaatcagctggaccctgataaggaagtagctggaagtcctggggaagaggagactgatgtaagcgaccaaggattgcaaagactcgcctgccagccagattagttgct Alignment from GeneWise GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtatggatatagtgttgaggtcttctactttcaccctccagGATGAGGACACAGAGAAACTACTTTCTTCCCCAGATGCAACAACCTTGGAGAATCAGCTGGACCCTGATAAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagcgaccaaggattgcaaagactcgcctgccagccagattagttgct #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTG-CTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG GATGAGGAC actccaattcaatgactatgaacacacttactgtcttattttcttttcagGAAGTGGTACAGTATGTCCTAGTGGTCTTGGCATTAGCTACTGTCCCCATTTTGCTGCCTGG-CACACCC------CTCCTACATGAGCACCAGCACAGAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtaagtatatagtgttgagtaactcacagcgttctttgtagGATGAGGAC Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG GATGAGGAC actccaattcaatgactatgaacacacttactgtcttattttcttttcagGAAGTGGTACAGTATGTCCTAGTGGTCTTGGCATTAGCTACTGTCCCCATTTTGCTGCCTGGCACACCC------CTCCTACATGAGCACCAGCACAGAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtaagtatatagtgttgaggtcttctactttcaccctccagGATGAGGAC Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG GATGAGGAC actccaattcaatgactatgaacacacttactgtcttattttcttttcagGAAGTGGTACAGTATGTCCTAGTGGTCTTGGCATTAGCTACTGTCCCCATTTTGCTGCCTGGCACACCC------CTCCTACATGAGCACCAGCACAGAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtaagtatatagtgttgagtaactcacagcgttctttgtagGATGAGGAC Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG GATGAGGAC actccaattcaatgactatgaacacacttactgtcttattttcttttcagGAAGTGGTACAGTATGTCCTAGTGGTCTTGGCATTAGCTACTGTCCCCATTTTGCTGCCTGGCACACC------CCTCCTACATGAGCACCAGCACAGAAGAAACTCCCA---AACACGAGCAGGCCAACAAgtaagtatatagtgttgagtaactcacagcgttctttgtagGATGAGGAC Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG GATGAGGAC actccaattcaatgactatgaacacacttactgtcttattttcttttcagGAAGTGGTACAGTATGTCCTAGTGGTCTTGGCATTAGCTACTGTCCCCATTTTGCTGCCTGGCACACC------CCTCCTACATGAGCACCAGCACAGAAGAAACTCCCA---AACACGAGCAGGCCAACAAgtaagtatatagtgttgagtaactcacagcgttctttgtagGATGAGGAC Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG GATGAGGAC actccaattcaatgactatgaacacacttactgtcttattttcttttcagGAAGTGGTACAGTATGTCCTAGTGGTCTTGGCATTAGCTACTGTCCCCATTTTGCTGCCTGGCACACCC------CTCCTACATGAGCACCAGCACAGAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtaagtatatagtgttgagtaactcacagcgttctttgtagGATGAGGAC Alignment from Exonerate_coding2genome actccaattcaatgactatgaacacacttactgtcttattttcttttcaggaagtggtacagtatgtcctagtggtcttggcattagctactgtccccattttgctgcctggcacacccctcctacatgagcaccagcacagaagaaactcccaaacacgagcaggccaacaagtaagtatatagtgttgagtaactcacagcgttctttgtaggatgaggac Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG GATGAGGAC actccaattcaatgactatgaacacacttactgtcttattttcttttcagGAAGTGGTACAGTATGTCCTAGTGGTCTTGGCATTAGCTACTGTCCCCATTTTGCTGCCTGGCACACCCCTC------CTACATGAGCACCAGCACAGAAGAAACTCCCAAACACGA---GCAGGCCAACAAgtaagtatatagtgttgagtaactcacagcgttctttgtagGATGAGGAC #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTC-TTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgatgagaatactcacaccctgttttcttccaggCACTTCGGTGAGGCCCACAGGCTGCTGCTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCCTTCTCCCAGA-CCCG---AATCATCTGCTGTTCCATGGGCAGgtgagcagtgtgtgacaggtgattctaatgtcatatagcataatctgacc Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgatgagaatactcacaccctgttttcttccaggCACTTCGGTGAGGCCCACAGGCTGCTGCTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCCTTCTCCCAGACCCG---AATCATCTGCTGTTCCATGGGCAGgtgagcagtgtgtgacaggtgattctaatgtcatatagcataatctgacc Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgatgagaatactcacaccctgttttcttccagGCACTTCGGTGAGGCCCACAGGCTGCTGCTTGTGTCA------GAGCTTATTTTCCTCCTGGGCCTCTATCTGGTG------CTCCTAATTCTCTATAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCCTTCTCCCAGACCCG---AATCATCTGCTGTTCCATGGGCAGgtgagcagtgtgtgacaggtgattctaatgtcatatagcataatctgacc Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTC-TTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgatgagaatactcacaccctgttttcttccagGCACTTCGGTGAGGCCCACAGGCTGCTGCTTG------TGTCAGAGCTTATTTTCCTCCTGGGCCT------CTATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TTCCTCCTTCTCCCAGA----CCCGAATCATCTGCTGTTCCATGGGCAGgtgagcagtgtgtgacaggtgattctaatgtcatatagcataatctgacc Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCT-CTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgatgagaatactcacaccctgttttcttccagGCACTTCGGTGAGGCCCACAGGCTGCTGCTTG------TGTCAGAGCTTATTTTCCTCCTGGGCCT------CTATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TTCCTCCTTCTCCCAGA----CCCGAATCATCTGCTGTTCCATGGGCAGgtgagcagtgtgtgacaggtgattctaatgtcatatagcataatctgacc Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgatgagaatactcacaccctgttttcttccagGCACTTCGGTGAGGCCCACAGGCTGCTGCTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCCTTCTCCCAGACCCG---AATCATCTGCTGTTCCATGGGCAGgtgagcagtgtgtgacaggtgattctaatgtcatatagcataatctgacc Alignment from Exonerate_coding2genome tgagtcttgcctcatcctgatgagaatactcacaccctgttttcttccaggcacttcggtgaggcccacaggctgctgcttgtgtcagagcttattttcctcctgggcctctatctggtgctcctaattctctataaatgggtaaacatctcagcaactagttctgcctcagcccccattattcacttcatcaatttcctccttctcccagacccgaatcatctgctgttccatgggcaggtgagcagtgtgtgacaggtgattctaatgtcatatagcataatctgacc Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgatgagaatactcacaccctgttttcttccagGCACTTCGGTGAGGCCCACAGGCTGCTGCTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCCTTCTCCCAGACCCG---AATCATCTGCTGTTCCATGGGCAGgtgagcagtgtgtgacaggtgattctaatgtcatatagcataatctgacc #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTG-AGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt accactgaagtgcatgttgcaaagtgttctttatgtggcatcttcttcagCTCTGCAGTCTGGCCACAAACCACCTGCAGCTTTCTCA-CTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGgtgtatgtcatttgatttgggcatgggtagtatgtgctgagtcttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt accactgaagtgcatgttgcaaagtgttctttatgtggcatcttcttcagCTCTGCAGTCTGGCCACAAACCACCTGCAGCTTTCTCACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGgtgtatgtcatttgatttgggcatgggtagtatgtgctgagtcttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accactgaagtgcatgttgcaaagtgttctttatgtggcatcttcttcagCTCTGCAGTCTGGCCACAAACCACCTGCAGCTTTCTCACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtatgtcatttgatttgggcatgggtagtatgtgctgagtcttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTG-AGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accactgaagtgcatgttgcaaagtgttctttatgtggcatcttcttcagCTCTGCAGTCTGGCCACAAACCACCTGCAGCTTTCTC-ACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtatgtcatttgatttgggcatgggtagtatgtgctgagtcttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTG-AGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accactgaagtgcatgttgcaaagtgttctttatgtggcatcttcttcagCTCTGCAGTCTGGCCACAAACCACCTGCAGCTTTCTC-ACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtatgtcatttgatttgggcatgggtagtatgtgctgagtcttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accactgaagtgcatgttgcaaagtgttctttatgtggcatcttcttcagCTCTGCAGTCTGGCCACAAACCACCTGCAGCTTTCTCACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtatgtcatttgatttgggcatgggtagtatgtgctgagtcttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGTGCAC accactgaagtgcatgttgcaaagtgttctttatgtggcatcttcttcagCTCTGCAGTCTGGCCACAAACCACCTGCAGCTTTCTCACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTGTATgtcatttgatttgggcatgggtagtatgtgctgagtcttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accactgaagtgcatgttgcaaagtgttctttatgtggcatcttcttcagCTCTGCAGTCTGGCCACAAACCACCTGCAGCTTTCTCACTCTTTTAAGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtatgtcatttgatttgggcatgggtagtatgtgctgagtcttgcctcat #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTC-TTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcagttctgatacgaagtattggttaagctctctgactgcgccttcagtGAGGAGTATTTATCTTGGCATTCCATGTTCACCTTGAACCCTAACATAACTGGGGTCCTTTCTTG-CCCATACCCATTTGGCATTGAGCCTgtgatggcatacgagtgtaggataaatagatacatgagaaggtagtccag Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcagttctgatacgaagtattggttaagctctctgactgcgccttcagtGAGGAGTATTTATCTTGGCATTCCATGTTCACCTTGAACCCTAACATAACTGGGGTCCTTTCTTGCCCATACCCATTTGGCATTGAGCCTgtgatggcatacgagtgtaggataaatagatacatgagaaggtagtccag Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcagttctgatacgaagtattggttaagctctctgactgcgccttcagTGAGGAGTATTTATCTTGGCATTCCATGTTCACCTTGAACCCTAACATAACTGGGGTCCTTTCTTGCCCATACCCATTTGGCATTGAGCCTgtgatggcatacgagtgtaggataaatagatacatgagaaggtagtccag Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcagttctgatacgaagtattggttaagctctctgactgcgccttcagTGAGGAGTATTTATCTTGGCATTCCATGTTCACCTTGAACCCTAACATAACTGGGGTCCTTTCTTGCCCATACCCATTTGGCATTGAGCCTgtgatggcatacgagtgtaggataaatagatacatgagaaggtagtccag Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG GAGCAGTTCTGATACGAAGTATTGGTTAAGCTCTCTGACTGCGCCTTCAGTGAGGAGTATTTATCTTGGCATTCCATGTTCACCTTGAACCCTAACATAACTGGGGTCCTTTCTTGCCCATACCCATTTGGCATTGAGCCTgtgatggcatacgagtgtaggataaatagatacatgagaaggtagtccag Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcagttctgatacgaagtattggttaagctctctgactgcgccttcagTGAGGAGTATTTATCTTGGCATTCCATGTTCACCTTGAACCCTAACATAACTGGGGTCCTTTCTTGCCCATACCCATTTGGCATTGAGCCTgtgatggcatacgagtgtaggataaatagatacatgagaaggtagtccag Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcagttctgatacgaagtattggttaagctctctgactgcgccttcagTGAGGAGTATTTATCTTGGCATTCCATGTTCACCTTGAACCCTAACATAACTGGGGTCCTTTCTTGCCCATACCCATTTGGCATTGAGCCTgtgatggcatacgagtgtaggataaatagatacatgagaaggtagtccag Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcagttctgatacgaagtattggttaagctctctgactgcgccttcagTGAGGAGTATTTATCTTGGCATTCCATGTTCACCTTGAACCCTAACATAACTGGGGTCCTTTCTTGCCCATACCCATTTGGCATTGAGCCTgtgatggcatacgagtgtaggataaatagatacatgagaaggtagtccag #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAAT----GAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag cacagctgaagaccagggagccattttccaatcccttcttctccgagcagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGCTCGAATGTTATA-TCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCTGGCTGGctgtaagtctatgtggagcagttctgatacgaagtattggttattctttcca Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGC---TTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag cacagctgaagaccagggagccattttccaatcccttcttctccgagcagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGCTCGAATGTTATATCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCTGGCTGGctgtaagtctatgtggagcagttctgatacgaagtattggttaagctctctg Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGC---TTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cacagctgaagaccagggagccattttccaatcccttcttctccgagcagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGCTCGAATGTTATATCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCTGGCTGGCTgtaagtctatgtggagcagttctgatacgaagtattggttattctttcca Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATG----AGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cacagctgaagaccagggagccattttccaatcccttcttctccgagcagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGCTCGAATGTTATATCAG-GCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCTGGCTGGCTgtaagtctatgtggagcagttctgatacgaagtattggttattctttcca Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCAT-----------------------------CTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- cacagctgaagaccagggagccattttccaatcccttcttctccgagcagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGCTCGAATGTTATATCAGGCAGCT--------------------------ACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCTGGCTGGCTGTAAGTCTATGTGGAGCAGTTCTGATACGAAGTATTGGTTATTCTTTCCA Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAAT---GAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cacagctgaagaccagggagccattttccaatcccttcttctccgagcagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGCTCGAATGTTATATCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCTGGCTGGCTgtaagtctatgtggagcagttctgatacgaagtattggttattctttcca Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAAT---GAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cacagctgaagaccagggagccattttccaatcccttcttctccgagcagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGCTCGAATGTTATATCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCTGGCTGGCTgtaagtctatgtggagcagttctgatacgaagtattggttattctttcca Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAAT---GAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cacagctgaagaccagggagccattttccaatcccttcttctccgagcagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGCTCGAATGTTATATCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCTGGCTGGCTgtaagtctatgtggagcagttctgatacgaagtattggttattctttcca #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTCTTCCCATACCTGGAGCAG-GAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagcTTTCACTGCCATGTCTTCTCATATCTGGAACAGCGAGGAAGCCC-GTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatggttgttcaatttatgttttcagGTCCTAG Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagcTTTCACTGCCATGTCTTCTCATATCTGGAACAGCGAGGAAGCCCGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatgaaatctcttgccctgatttcagGTCCTAG Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGCGAGGAAGCCCGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatggttgttcaatttatgttttcagGTCCTAG Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGCGAGGAAGCCCGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatggttgttcaatttatgttttcagGTCCTAG Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTGGAGCAG-GAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGCGAGGAAGCCC-GTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatggttgttcaatttatgttttcagGTCCTAG Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGCGAGGAAGCCCGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatggttgttcaatttatgttttcagGTCCTAG Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGCGAGGAAGCCCGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatggttgttcaatttatgttttcagGTCCTAG #### Tctn3_ID7992_9 --> 0 - 0 Original Alignment GTCGTCTACGAGATAGAGACCAATGGG-ACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctatttattaaggaaacgtgatttaacttcctctagGTCGTCTATGAGATAGAGACCAATGGGCACCTTTGGGA-ACAGAAAGTCTCTGTCAGCTTCCGACAGACAAACTTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaactctcctccctctgggatggaattgagcctaagcatacaaaattac Alignment from CESAR GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctatttattaaggaaacgtgatttaacttcctctagGTCGTCTATGAGATAGAGACCAATGGGCACCTTTGGGAACAGAAAGTCTCTGTCAGCTTCCGACAGACAAACTTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaactctcctccctctgggatggaattgagcctaagcatacaaaattac Alignment from Spaln_aa2Genome GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctatttattaaggaaacgtgatttaacttcctctagGTCGTCTATGAGATAGAGACCAATGGGCACCTTTGGGAACAGAAAGTCTCTGTCAGCTTCCGACAGACAAACTTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaactctcctccctctgggatggaattgagcctaagcatacaaaattac Alignment from Spaln_nt2Genome GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctatttattaaggaaacgtgatttaacttcctctagGTCGTCTATGAGATAGAGACCAATGGGCACCTTTGGGAACAGAAAGTCTCTGTCAGCTTCCGACAGACAAACTTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaactctcctccctctgggatggaattgagcctaagcatacaaaattac Alignment from Pairagon GTCGTCTACGAGATAGAGACCAATGGG-ACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctatttattaaggaaacgtgatttaacttcctctagGTCGTCTATGAGATAGAGACCAATGGGCACCTTTGGGA-ACAGAAAGTCTCTGTCAGCTTCCGACAGACAAACTTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaactctcctccctctgggatggaattgagcctaagcatacaaaattac Alignment from Exonerate_protein2genome GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctatttattaaggaaacgtgatttaacttcctctagGTCGTCTATGAGATAGAGACCAATGGGCACCTTTGGGAACAGAAAGTCTCTGTCAGCTTCCGACAGACAAACTTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaactctcctccctctgggatggaattgagcctaagcatacaaaattac Alignment from Exonerate_coding2genome GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctatttattaaggaaacgtgatttaacttcctctagGTCGTCTATGAGATAGAGACCAATGGGCACCTTTGGGAACAGAAAGTCTCTGTCAGCTTCCGACAGACAAACTTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaactctcctccctctgggatggaattgagcctaagcatacaaaattac Alignment from GeneWise GTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAAAGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATCGTTCACTTCAGG caggtgcacatgctctatttattaaggaaacgtgatttaacttcctctagGTCGTCTATGAGATAGAGACCAATGGGCACCTTTGGGAACAGAAAGTCTCTGTCAGCTTCCGACAGACAAACTTGACAGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATTGTTCACTTCAGAgtaactctcctccctctgggatggaattgagcctaagcatacaaaattac #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment GTGCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTAC-TATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAggtatgttagaaaccaccatttcttcccaggaTTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCTTAAAGGACCTATCTAGTAGCTATAGCTCTGAGCCGGCTCTGGATGCAGTTTCAGACCTACAACT-TAGAGTCTTGAGGgtgagtaatagccaggtttctgcagcttctgatttctaaatggtaggtgc Alignment from CESAR GTGCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAggtactgtagaaaccaccatttcttcccaggaTTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCTTAAAGGACCTATCTAGTAGCTATAGCTCTGAGCCGGCTCTGGATGCAGTTTCAGACCTACAACTTAGAGTCTTGAGGgtgagtaatagccaggtttctgcagcttctgatttctaaatggtaggtgc Alignment from Spaln_aa2Genome GTTCTCATCCTGTGTGTCTTACTACTTGGACTTCTCAACTCACAGACCAAG ctgagatctccttcacacacccttttcttgcatgtgtgttttctcccccag Alignment from Spaln_nt2Genome GTGCCGAGAGCAACCCTGCAGGT-----------------------------TTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTAC-TATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGGTATGTTAGAAACCACCATTTCTTCCCAGGATTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCTTAAAGGACCTATCTAGTAGCTATAGCTCTGAGCCGGCTCTGGATGCAGTTTCAGACCTACAACTT-AGAGTCTTGAGGgtgagtaatagccaggtttctgcagcttctgatttctaaatggtaggtgc Alignment from Pairagon GTGCCGAGAGCAACCCTGCAGGT-----------------------------TTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTA-CTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGGTATGTTAGAAACCACCATTTCTTCCCAGGATTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCTTAAAGGACCTATCTAGTAGCTATAGCTCTGAGCCGGCTCTGGATGCAGTTTCAGACCTACAACTT-AGAGTCTTGAGGgtgagtaatagccaggtttctgcagcttctgatttctaaatggtaggtgc Alignment from Exonerate_protein2genome CCGAGAGCAACCCTGCAGGTT TCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG CAGAGAGCAACCCAGCA---GgtatgttagaaaccaccatttcttcccaggatTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCTTAAAGGACCTATCTAGTAGCTATAGCTCTGAGCCGGCTCTGGATGCAGTTTCAGACCTACAACTTAGAGTCTTGAGGgtgagtaatagccaggtttctgcagcttctgatttctaaatggtaggtgc Alignment from Exonerate_coding2genome CCGAGAGCAACCCTGCAGGTT TCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG CAGAGAGCAACCCAGCA---GgtatgttagaaaccaccatttcttcccaggatTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCTTAAAGGACCTATCTAGTAGCTATAGCTCTGAGCCGGCTCTGGATGCAGTTTCAGACCTACAACTTAGAGTCTTGAGGgtgagtaatagccaggtttctgcagcttctgatttctaaatggtaggtgc Alignment from GeneWise GTGCCGAGAGCAACCCTGCAG GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGgtatgttagaaaccaccatttcttcccagGATTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCTTAAAGGACCTATCTAGTAGCTATAGCTCTGAGCCGGCTCTGGATGCAGTTTCAGACCTACAACTTAGAGTCTTGAGGgtgagtaatagccaggtttctgcagcttctgatttctaaatggtaggtgc #### Tctn3_ID7999_2 --> 2 - 2 Original Alignment ctTTACCGATCTGTGTCTGTGACTTG-ACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggtagatttcagctaaaaatggccaccatacttgaaatatattcacagctTTACCAATATGCGTCTGTGACCTGCACTCCAGGTA-CTGTGATTTAAACTGTTGTTGCGACAAGGATTGTGATCTTCTACATCCCAGAACAGTCTTTTCCTTCTGTCTTCGAGGCAGTGTAaggtgggttgtagcacatgtccagttgtagggtgaaagtcctgtaccctgcc Alignment from CESAR ctTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggtagatttcagctaaaaatggccaccatacttgaaatatattcacagctTTACCAATATGCGTCTGTGACCTGCACTCCAGGTACTGTGATTTAAACTGTTGTTGCGACAAGGATTGTGATCTTCTACATCCCAGAACAGTCTTTTCCTTCTGTCTTCGAGGCAGTGTAaggtgggttgtagcacatgtccagttgtagggtgaaagtcctgtaccctgcc Alignment from Spaln_aa2Genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggtagatttcagctaaaaatggccaccatacttgaaatatattcacagCTTTACCAATATGCGTCTGTGACCTGCACTCCAGGTACTGTGATTTAAACTGTTGTTGCGACAAGGATTGTGATCTTCTACATCCCAGAACAGTCTTTTCCTTCTGTCTTCGAGGCAGTGTAAGgtgggttgtagcacatgtccagttgtagggtgaaagtcctgtaccctgcc Alignment from Spaln_nt2Genome CTTTACCGATCTGTGTCTGTGACTTG-ACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggtagatttcagctaaaaatggccaccatacttgaaatatattcacagCTTTACCAATATGCGTCTGTGACCTGCACTCCAGGTA-CTGTGATTTAAACTGTTGTTGCGACAAGGATTGTGATCTTCTACATCCCAGAACAGTCTTTTCCTTCTGTCTTCGAGGCAGTGTAAGgtgggttgtagcacatgtccagttgtagggtgaaagtcctgtaccctgcc Alignment from Pairagon CTTTACCGATCTGTGTCTGTGACTTG-ACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggtagatttcagctaaaaatggccaccatacttgaaatatattcacagCTTTACCAATATGCGTCTGTGACCTGCACTCCAGGTA-CTGTGATTTAAACTGTTGTTGCGACAAGGATTGTGATCTTCTACATCCCAGAACAGTCTTTTCCTTCTGTCTTCGAGGCAGTGTAAGgtgggttgtagcacatgtccagttgtagggtgaaagtcctgtaccctgcc Alignment from Exonerate_protein2genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggtagatttcagctaaaaatggccaccatacttgaaatatattcacagCTTTACCAATATGCGTCTGTGACCTGCACTCCAGGTACTGTGATTTAAACTGTTGTTGCGACAAGGATTGTGATCTTCTACATCCCAGAACAGTCTTTTCCTTCTGTCTTCGAGGCAGTGTAAGgtgggttgtagcacatgtccagttgtagggtgaaagtcctgtaccctgcc Alignment from Exonerate_coding2genome TTTCCAGCTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggtagatttcagctaaaaatggccaccatacttgaaatataTTCACAGCTTTACCAATATGCGTCTGTGACCTGCACTCCAGGTACTGTGATTTAAACTGTTGTTGCGACAAGGATTGTGATCTTCTACATCCCAGAACAGTCTTTTCCTTCTGTCTTCGAGGCAGTGTAAGgtgggttgtagcacatgtccagttgtagggtgaaagtcctgtaccctgcc Alignment from GeneWise CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggtagatttcagctaaaaatggccaccatacttgaaatatattcacagCTTTACCAATATGCGTCTGTGACCTGCACTCCAGGTACTGTGATTTAAACTGTTGTTGCGACAAGGATTGTGATCTTCTACATCCCAGAACAGTCTTTTCCTTCTGTCTTCGAGGCAGTGTAAGgtgggttgtagcacatgtccagttgtagggtgaaagtcctgtaccctgcc #### Tdrd1_ID12218_19 --> 2 - 1 Original Alignment ccAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAAT-GTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAg gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagcaAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATCGTGCTAG-AAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCggtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from CESAR ccAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAg gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagcaAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATCGTGCTAGAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCggtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Spaln_aa2Genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagCAAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATCGTGCTAGAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Spaln_nt2Genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagCAAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATCGTGCTAGAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Pairagon CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAAT-GTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagCAAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATCGTGCTAGA-AGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Exonerate_protein2genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagCAAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATCGTGCTAGAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagCAAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATCGTGCTAGAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat #### Tjp2_ID5274_13 --> 2 - 2 Original Alignment tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGA-GTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag agtgtagttgtctccttgaaggtagagcatgtaaattttcaaaattacagctTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGAGGTGAGGTCTTTCGACGTGATAGACA-ACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTAATCCCCAACAAAAGCaggtaagtaccccattctgtcagaccccaccacggaagacagcagccccatg Alignment from CESAR tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag agtgtagttgtctccttgaaggtagagcatgtaaattttcaaaattacagctTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGAGGTGAGGTCTTTCGACGTGATAGACAACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTAATCCCCAACAAAAGCaggtaagtaccccattctgtcagaccccaccacggaagacagcagccccatg Alignment from Spaln_aa2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG agtgtagttgtctccttgaaggtagagcatgtaaattttcaaaattacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGAGGTGAGGTCTTTCGACGTGATAGACAACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTAATCCCCAACAAAAGCAGgtaagtaccccattctgtcagaccccaccacggaagacagcagccccatg Alignment from Spaln_nt2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGA-GTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG agtgtagttgtctccttgaaggtagagcatgtaaattttcaaaattacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGAGGTGAGGTCTTTCGACGTGATAGACA-ACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTAATCCCCAACAAAAGCAGgtaagtaccccattctgtcagaccccaccacggaagacagcagccccatg Alignment from Pairagon TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGA-GTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG agtgtagttgtctccttgaaggtagagcatgtaaattttcaaaattacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGAGGTGAGGTCTTTCGACGTGATAGACA-ACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTAATCCCCAACAAAAGCAGgtaagtaccccattctgtcagaccccaccacggaagacagcagccccatg Alignment from Exonerate_protein2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG agtgtagttgtctccttgaaggtagagcatgtaaattttcaaaattacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGAGGTGAGGTCTTTCGACGTGATAGACAACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTAATCCCCAACAAAAGCAGgtaagtaccccattctgtcagaccccaccacggaagacagcagccccatg Alignment from Exonerate_coding2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG agtgtagttgtctccttgaaggtagagcatgtaaattttcaaaattacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGAGGTGAGGTCTTTCGACGTGATAGACAACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTAATCCCCAACAAAAGCAGgtaagtaccccattctgtcagaccccaccacggaagacagcagccccatg Alignment from GeneWise TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG agtgtagttgtctccttgaaggtagagcatgtaaattttcaaaattacagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGAGGTGAGGTCTTTCGACGTGATAGACAACTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCCTAATCCCCAACAAAAGCAGgtaagtaccccattctgtcagaccccaccacggaagacagcagccccatg #### Tjp2_ID5278_9 --> 1 - 1 Original Alignment cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCC-ACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg ttgttattcaataaagcattgaccatagtctctctctcttatcttttaagcACTAAAGAAGAAACATCCGGCAAACTGTCAAGAATGGGAGCCATGCCCCACATCATTCA-GGACACAGGTAGCCCCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCA---AATCAACAAAAAGGCCCAggtgtgttgttatgctattcttttatctatctaaaacatagacaggttggg Alignment from CESAR cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg ttgttattcaataaagcattgaccatagtctctctctcttatcttttaagcACTAAAGAAGAAACATCCGGCAAACTGTCAAGAATGGGAGCCATGCCCCACATCATTCAGGACACAGGTAGCCCCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAACAAAAAGGCCCAggtgtgttgttatgctattcttttatctatctaaaacatagacaggttggg Alignment from Spaln_aa2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattgaccatagtctctctctcttatcttttaagCACTAAAGAAGAAACATCCGGCAAACTGTCAAGAATGGGAGCCATGCCCCACATCATTCAGGACACAGGTAGCCCCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAACAAAAAGGCCCAGgtgtgttgttatgctattcttttatctatctaaaacatagacaggttggg Alignment from Spaln_nt2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCC-ACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattgaccatagtctctctctcttatcttttaagCACTAAAGAAGAAACATCCGGCAAACTGTCAAGAATGGGAGCCATGCCCCACATCATTC-AGGACACAGGTAGCCCCACAGCTGCAGGAGTTA---TGGCCAGTAAGGAGCCAA---ATCAACAAAAAGGCCCAGgtgtgttgttatgctattcttttatctatctaaaacatagacaggttggg Alignment from Pairagon CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACAT---------------------CACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattgaccatagtctctctctcttatcttttaagCACTAAAGAAGAAACATCCGGCAAACTGTCAAGAATGGGAGCCATGCCCC---------------------ACATCATTCAGGACACAGGTAGCCCCACAGCTGCAGGAGTTAT---GGCCAGTAAGGAGCCAA---ATCAACAAAAAGGCCCAGgtgtgttgttatgctattcttttatctatctaaaacatagacaggttggg Alignment from Exonerate_protein2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattgaccatagtctctctctcttatcttttaagCACTAAAGAAGAAACATCCGGCAAACTGTCAAGAATGGGAGCCATGCCCCACATCATTCAGGACACAGGTAGCCCCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAACAAAAAGGCCCAGgtgtgttgttatgctattcttttatctatctaaaacatagacaggttggg Alignment from Exonerate_coding2genome ttgttattcaataaagcattgaccatagtctctctctcttatcttttaagcactaaagaagaaacatccggcaaactgtcaagaatgggagccatgccccacatcattcaggacacaggtagccccacagctgcaggagttatggccagtaaggagccaaatcaacaaaaaggcccaggtgtgttgttatgctattcttttatctatctaaaacatagacaggttggg Alignment from GeneWise CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattgaccatagtctctctctcttatcttttaagCACTAAAGAAGAAACATCCGGCAAACTGTCAAGAATGGGAGCCATGCCCCACATCATTCAGGACACAGGTAGCCCCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAACAAAAAGGCCCAGgtgtgttgttatgctattcttttatctatctaaaacatagacaggttggg #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCA-GCAGCAGCCTATGGAAGATCACCTGTG ttatcttaagctaaggcaagatgactttttcccttttaatcatatttcagctTCCAGCCTAAGGACACCAGTAGCAGTGCCTTGTCCATATCCAACACCACTTGGAATTGTGCCACATGCAGGAACGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTGTCCCCCCAGATGAGTGCTTCCACTGCTGCTGCCACAGCACGCAGCGGCTT-TGGAAGATCACCTGTGgtaactcctgcatatatgtaggtctgttaaagtgcaaagctggtacattt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG ttatcttaagctaaggcaagatgactttttcccttttaatcatatttcagctTCCAGCCTAAGGACACCAGTAGCAGTGCCTTGTCCATATCCAACACCACTTGGAATTGTGCCACATGCAGGAACGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTGTCCCCCCAGATGAGTGCTTCCACTGCTGCTGCCACAGCACGCAGCGGCTTTGGAAGATCACCTGTGgtaactcctgcatatatgtaggtctgttaaagtgcaaagctggtacattt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG ttatcttaagctaaggcaagatgactttttcccttttaatcatatttcagCTTCCAGCCTAAGGACACCAGTAGCAGTGCCTTGTCCATATCCAACACCACTTGGAATTGTGCCACATGCAGGAACGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTGTCCCCCCAGATGAGTGCTTCCACTGCTGCTGCCACAGCACGCAGCGGCTTTGGAAGATCACCTGTGgtaactcctgcatatatgtaggtctgttaaagtgcaaagctggtacattt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCA-GCAGCAGCCTATGGAAGATCACCTGTG ttatcttaagctaaggcaagatgactttttcccttttaatcatatttcagCTTCCAGCCTAAGGACACCAGTAGCAGTGCCTTGTCCATATCCAACACCACTTGGAATTGTGCCACATGCAGGAACGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTGTCCCCCCAGATGAGTGCTTCCACTGCTGCTGCCACAGCACGCAGC-GGCTTTGGAAGATCACCTGTGgtaactcctgcatatatgtaggtctgttaaagtgcaaagctggtacattt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCA-GCAGCAGCCTATGGAAGATCACCTGTG ttatcttaagctaaggcaagatgactttttcccttttaatcatatttcagCTTCCAGCCTAAGGACACCAGTAGCAGTGCCTTGTCCATATCCAACACCACTTGGAATTGTGCCACATGCAGGAACGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTGTCCCCCCAGATGAGTGCTTCCACTGCTGCTGCCACAGCACGCAGCGGCTT-TGGAAGATCACCTGTGgtaactcctgcatatatgtaggtctgttaaagtgcaaagctggtacattt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG ttatcttaagctaaggcaagatgactttttcccttttaatcatatttcagCTTCCAGCCTAAGGACACCAGTAGCAGTGCCTTGTCCATATCCAACACCACTTGGAATTGTGCCACATGCAGGAACGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTGTCCCCCCAGATGAGTGCTTCCACTGCTGCTGCCACAGCACGCAGCGGCTTTGGAAGATCACCTGTGgtaactcctgcatatatgtaggtctgttaaagtgcaaagctggtacattt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG ttatcttaagctaaggcaagatgactttttcccttttaatcatatttcagCTTCCAGCCTAAGGACACCAGTAGCAGTGCCTTGTCCATATCCAACACCACTTGGAATTGTGCCACATGCAGGAACGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTGTCCCCCCAGATGAGTGCTTCCACTGCTGCTGCCACAGCACGCAGCGGCTTTGGAAGATCACCTGTGgtaactcctgcatatatgtaggtctgttaaagtgcaaagctggtacattt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG ttatcttaagctaaggcaagatgactttttcccttttaatcatatttcagCTTCCAGCCTAAGGACACCAGTAGCAGTGCCTTGTCCATATCCAACACCACTTGGAATTGTGCCACATGCAGGAACGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTGTCCCCCCAGATGAGTGCTTCCACTGCTGCTGCCACAGCACGCAGCGGCTTTGGAAGATCACCTGTGgtaactcctgcatatatgtaggtctgttaaagtgcaaagctggtacattt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGT-ATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg gagatgggttggctaagtttttgagggccaaatttcttttgtgccttcaggtCTTGACACCATCCCCACTGCCACAGGTAGACATCTGCTTGTGTCTGGGTGGTGGGGCCATGG-ACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTggtaggatgatggctacaatgtctcccaggactgagttcagtaggtggagg Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg gagctgggttggctaagtttttgagggccaaatttcttttgtgccttcaggtCTTGACACCATCCCCACTGCCACAGGTAGACATCTGCTTGTGTCTGGGTGGTGGGGCCATGGACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTggtaggatgatggctacaatgtctcccaggactgagttcagtaggtggagg Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gagatgggttggctaagtttttgagggccaaatttcttttgtgccttcagGTCTTGACACCATCCCCACTGCCACAGGTAGACATCTGCTTGTGTCTGGGTGGTGGGGCCATGGACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaggatgatggctacaatgtctcccaggactgagttcagtaggtggagg Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gagatgggttggctaagtttttgagggccaaatttcttttgtgccttcagGTCTTGACACCATCCCCACTGCCACAGGTAGACATCTGCTTGTGTCTGGGTGGTGGGGCCATGGACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaggatgatggctacaatgtctcccaggactgagttcagtaggtggagg Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gagatgggttggctaagtttttgagggccaaatttcttttgtgccttcagGTCTTGACACCATCCCCACTGCCACAGGTAGACATCTGCTTGTGTCTGGGTGGTGGGGCCATGGACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaggatgatggctacaatgtctcccaggactgagttcagtaggtggagg Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gagatgggttggctaagtttttgagggccaaatttcttttgtgccttcagGTCTTGACACCATCCCCACTGCCACAGGTAGACATCTGCTTGTGTCTGGGTGGTGGGGCCATGGACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaggatgatggctacaatgtctcccaggactgagttcagtaggtggagg Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gagatgggttggctaagtttttgagggccaaatttcttttgtgccttcagGTCTTGACACCATCCCCACTGCCACAGGTAGACATCTGCTTGTGTCTGGGTGGTGGGGCCATGGACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaggatgatggctacaatgtctcccaggactgagttcagtaggtggagg Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gagatgggttggctaagtttttgagggccaaatttcttttgtgccttcagGTCTTGACACCATCCCCACTGCCACAGGTAGACATCTGCTTGTGTCTGGGTGGTGGGGCCATGGACAGCATCCCAACTACCTGGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaggatgatggctacaatgtctcccaggactgagttcagtaggtggagg #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGC-TTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactgtccctgagtcaggttctggctctcttgcaggtTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTCCTGCCACTGGCCTTGGCAACCACTCTCACCAGGCTTTG-CTTCAGCCTACTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAggtgaggagggtgcccagcagatctcagaaggtgcgggactagtgaaggtg Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactgtccctgagtcaggttctggctctcttgcaggtTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTCCTGCCACTGGCCTTGGCAACCACTCTCACCAGGCTTTGCTTCAGCCTACTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAggtgaggagggtgcccagcagatctcagaaggtgcgggactagtgaaggtg Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgtccctgagtcaggttctggctctcttgcagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTCCTGCCACTGGCCTTGGCAACCACTCTCACCAGGCTTTGCTTCAGCCTACTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtgaggagggtgcccagcagatctcagaaggtgcgggactagtgaaggtg Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgtccctgagtcaggttctggctctcttgcagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTCCTGCCACTGGCCTTGGCAACCACTCTCACCAGGCTTTGCTTCAGCCTACTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtgaggagggtgcccagcagatctcagaaggtgcgggactagtgaaggtg Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgtccctgagtcaggttctggctctcttgcagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTCCTGCCACTGGCCTTGGCAACCACTCTCACCAGGCTTTGCTTCAGCCTACTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtgaggagggtgcccagcagatctcagaaggtgcgggactagtgaaggtg Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgtccctgagtcaggttctggctctcttgcagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTCCTGCCACTGGCCTTGGCAACCACTCTCACCAGGCTTTGCTTCAGCCTACTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtgaggagggtgcccagcagatctcagaaggtgcgggactagtgaaggtg Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgtccctgagtcaggttctggctctcttgcagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTCCTGCCACTGGCCTTGGCAACCACTCTCACCAGGCTTTGCTTCAGCCTACTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtgaggagggtgcccagcagatctcagaaggtgcgggactagtgaaggtg Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgtccctgagtcaggttctggctctcttgcagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTCCTGCCACTGGCCTTGGCAACCACTCTCACCAGGCTTTGCTTCAGCCTACTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtgaggagggtgcccagcagatctcagaaggtgcgggactagtgaaggtg #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAA-CTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tcccccttgatatgacctatgttgtgtgaaccacatgctgctcattgtagGTAGCTGAAGGTGTAGAACCTGAAGG-TAAGAGTCGCTTGCAATACCCTATTAATggtgagtcagttgtactcaacctaaatcagctttttggcactgaaatttac Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tcccccttgatatgacctatgttgtgtgaaccacatgctgctcattgtagGTAGCTGAAGGTGTAGAACCTGAAGGTAAGAGTCGCTTGCAATACCCTATTAATggtgagtcagttgtactcaacctaaatcagctttttggcactgaaatttac Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctatgttgtgtgaaccacatgctgctcattgtagGTAGCTGAAGGTGTAGAACCTGAAGGTAAGAGTCGCTTGCAATACCCTATTAATGgtgagtcagttgtactcaacctaaatcagctttttggcactgaaatttac Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAAC-TGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctatgttgtgtgaaccacatgctgctcattgtagGTAGCTGAAGGTGTAGAACCTGAAGG-TAAGAGTCGCTTGCAATACCCTATTAATGgtgagtcagttgtactcaacctaaatcagctttttggcactgaaatttac Alignment from Pairagon ------------------------------------------------AGGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG TCCCCCTTGATATGACCTATGTTGTGTGAACCACATGCTGCTCATTGTAGGTAGCTGAAGGTGTAGAACCTGAAGGTAAGAGTCGCTTGCAATACCCTATTAATGgtgagtcagttgtactcaacctaaatcagctttttggcactgaaatttac Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctatgttgtgtgaaccacatgctgctcattgtagGTAGCTGAAGGTGTAGAACCTGAAGGTAAGAGTCGCTTGCAATACCCTATTAATGgtgagtcagttgtactcaacctaaatcagctttttggcactgaaatttac Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctatgttgtgtgaaccacatgctgctcattgtagGTAGCTGAAGGTGTAGAACCTGAAGGTAAGAGTCGCTTGCAATACCCTATTAATGgtgagtcagttgtactcaacctaaatcagctttttggcactgaaatttac Alignment from GeneWise GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctatgttgtgtgaaccacatgctgctcattgtagGTAGCTGAAGGTGTAGAACCTGAAGGTAAGAGTCGCTTGCAATACCCTATTAATGgtgagtcagttgtactcaacctaaatcagctttttggcactgaaatttac #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGG-CTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG agggcattatactcatgctccaatccaaagtgaatcttgtgtctttttaggtGTTGCAGCTTTATTGATACTGCTGCCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACCTACCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCCTTGGTCTGC-GGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgagcgatctcccccttgatatgacctatgttgtgtgtgattttttttc Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG agggcattatactcatgctccaatccaaagtgaatcttgtgtctttttaggtGTTGCAGCTTTATTGATACTGCTGCCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACCTACCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCCTTGGTCTGCGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgagcgatctcccccttgatatgacctatgttgtgtgaaccacatgctg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG agggcattatactcatgctccaatccaaagtgaatcttgtgtctttttagGTGTTGCAGCTTTATTGATACTGCTGCCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACCTACCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCCTTGGTCTGCGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgagcgatctcccccttgatatgacctatgttgtgtgtgattttttttc Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG agggcattatactcatgctccaatccaaagtgaatcttgtgtctttttagGTGTTGCAGCTTTATTGATACTGCTGCCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACCTACCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCCTTGGTCTGCGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgagcgatctcccccttgatatgacctatgttgtgtgtgattttttttc Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGG-CTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG agggcattatactcatgctccaatccaaagtgaatcttgtgtctttttagGTGTTGCAGCTTTATTGATACTGCTGCCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACCTACCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCCTTGGTCTGC-GGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgagcgatctcccccttgatatgacctatgttgtgtgtgattttttttc Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG agggcattatactcatgctccaatccaaagtgaatcttgtgtctttttagGTGTTGCAGCTTTATTGATACTGCTGCCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACCTACCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCCTTGGTCTGCGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgagcgatctcccccttgatatgacctatgttgtgtgtgattttttttc Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG agggcattatactcatgctccaatccaaagtgaatcttgtgtctttttagGTGTTGCAGCTTTATTGATACTGCTGCCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACCTACCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCCTTGGTCTGCGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgagcgatctcccccttgatatgacctatgttgtgtgtgattttttttc Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAGGTG----------------------------------------------- agggcattatactcatgctccaatccaaagtgaatcttgtgtctttttagGTGTTGCAGCTTTATTGATACTGCTGCCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACCTACCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTGTTCATCTGGCCTTGGTCTGCGGTGGCACTCTATCTGCTGCCTGCATGCAGGGTGAGCGATCTCCCCCTTGATATGACCTATGTTGTGTGTGATTTTTTTTC #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctatctttatcattcttattacacttattgtgccttggtcccctcctcagcTGCTCCGAAGCACCAGAAGA-TGCTTGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagttgcaagcatcgataaggagacatcaatatgcttggctctgcgct Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctatctttatcattcttattacacttattgtgccttggtcccctcctcagcTGCTCCGAAGCACCAGAAGATGCTTGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagttgcaagcatcgataaggagacatcaatatgcttggctctgcgct Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctatctttatcattcttattacacttattgtgccttggtcccctcctcagCTGCTCCGAAGCACCAGAAGATGCTTGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagttgcaagcatcgataaggagacatcaatatgcttggctctgcgct Alignment from Spaln_nt2Genome CTGCTCTGAAGC-CCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctatctttatcattcttattacacttattgtgccttggtcccctcctcagCTGCTCCGAAGCACCAGAAGA-TGCTTGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagttgcaagcatcgataaggagacatcaatatgcttggctctgcgct Alignment from Pairagon CTGCTCTGAAGC-CCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctatctttatcattcttattacacttattgtgccttggtcccctcctcagCTGCTCCGAAGCACCAGAAGATG-CTTGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagttgcaagcatcgataaggagacatcaatatgcttggctctgcgct Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctatctttatcattcttattacacttattgtgccttggtcccctcctcagCTGCTCCGAAGCACCAGAAGATGCTTGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagttgcaagcatcgataaggagacatcaatatgcttggctctgcgct Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctatctttatcattcttattacacttattgtgccttggtcccctcctcagCTGCTCCGAAGCACCAGAAGATGCTTGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagttgcaagcatcgataaggagacatcaatatgcttggctctgcgct Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctatctttatcattcttattacacttattgtgccttggtcccctcctcagCTGCTCCGAAGCACCAGAAGATGCTTGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagttgcaagcatcgataaggagacatcaatatgcttggctctgcgct #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCT-GCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tcggtttactttgtggtaggttgttaatccccctttttctctgttaatagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCCGCTTGCA-AGTCCGATTTGGCACAAATTCTTTCTGTAACTCCATTATCTCTCTGAATCTGACAATAaggtgagttgaagaataggtctactgagagttgcaaactagatttagttcct Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tcggtttactttgtggtaggttgttaatccccctttttctctgttaatagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCCGCTTGCAAGTCCGATTTGGCACAAATTCTTTCTGTAACTCCATTATCTCTCTGAATCTGACAATAaggtgagttgaagaataggtctactgagagttgcaaactagatttagttcct Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tcggtttactttgtggtaggttgttaatccccctttttctctgttaatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCCGCTTGCAAGTCCGATTTGGCACAAATTCTTTCTGTAACTCCATTATCTCTCTGAATCTGACAATAAGgtgagttgaagaataggtctactgagagttgcaaactagatttagttcct Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tcggtttactttgtggtaggttgttaatccccctttttctctgttaatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCCGCTTGCAAGTCCGATTTGGCACAAATTCTTTCTGTAACTCCATTATCTCTCTGAATCTGACAATAAGgtgagttgaagaataggtctactgagagttgcaaactagatttagttcct Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGT-------------GTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tcggtttactttgtggtaggttgttaatccccctttttctctgttaatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCCGCTTGCAAGTC-------------CGATTTGGCACAAATTCTTTCTGTAACTCCATTATCTCTCTGAATCTGACAATAAGgtgagttgaagaataggtctactgagagttgcaaactagatttagttcct Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tcggtttactttgtggtaggttgttaatccccctttttctctgttaatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCCGCTTGCAAGTCCGATTTGGCACAAATTCTTTCTGTAACTCCATTATCTCTCTGAATCTGACAATAAGgtgagttgaagaataggtctactgagagttgcaaactagatttagttcct Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tcggtttactttgtggtaggttgttaatccccctttttctctgttaatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCCGCTTGCAAGTCCGATTTGGCACAAATTCTTTCTGTAACTCCATTATCTCTCTGAATCTGACAATAAGgtgagttgaagaataggtctactgagagttgcaaactagatttagttcct Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tcggtttactttgtggtaggttgttaatccccctttttctctgttaatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCCGCTTGCAAGTCCGATTTGGCACAAATTCTTTCTGTAACTCCATTATCTCTCTGAATCTGACAATAAGgtgagttgaagaataggtctactgagagttgcaaactagatttagttcct #### Tmem180_ID9862_4 --> 1 - 0 Original Alignment cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAAC-TTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctatggccagtataaccatgatcctgtgttcttgtctgtctcagtGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACTTTAGGGCAGTACCTCCACCAACAGGCACACCACCAGAACCTTCCTAT-GTTTGTAGGTATGTATTTGGTGCAGgtgagtcagcctatcccttagctccctgccaggcttgattctggcctagg Alignment from CESAR cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctatggccagtataaccatgatcctgtgttcttgtctgtctcagtGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACTTTAGGGCAGTACCTCCACCAACAGGCACACCACCAGAACCTTCCTATGTTTGTAGGTATGTATTTGGTGCAGgtgagtcagcctatcccttagctccctgccaggcttgattctggcctagg Alignment from Spaln_aa2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctatggccagtataaccatgatcctgtgttcttgtctgtctcagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACTTTAGGGCAGTACCTCCACCAACAGGCACACCACCAGAACCTTCCTATGTTTGTAGGTATGTATTTGGTGCAGgtgagtcagcctatcccttagctccctgccaggcttgattctggcctagg Alignment from Spaln_nt2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAAC-TTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctatggccagtataaccatgatcctgtgttcttgtctgtctcagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACTTTAGGGCAGTACCTCCACCAACAGGCACACCACCAGAACCTTCCTAT-GTTTGTAGGTATGTATTTGGTGCAGgtgagtcagcctatcccttagctccctgccaggcttgattctggcctagg Alignment from Pairagon CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctatggccagtataaccatgatcctgtgttcttgtctgtctcagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACTTTAGGGCAGTACCTCCACCAACAGGCACACCACCAGAACCTTCCTATGTTTGTAGGTATGTATTTGGTGCAGgtgagtcagcctatcccttagctccctgccaggcttgattctggcctagg Alignment from Exonerate_protein2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctatggccagtataaccatgatcctgtgttcttgtctgtctcagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACTTTAGGGCAGTACCTCCACCAACAGGCACACCACCAGAACCTTCCTATGTTTGTAGGTATGTATTTGGTGCAGgtgagtcagcctatcccttagctccctgccaggcttgattctggcctagg Alignment from Exonerate_coding2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctatggccagtataaccatgatcctgtgttcttgtctgtctcagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACTTTAGGGCAGTACCTCCACCAACAGGCACACCACCAGAACCTTCCTATGTTTGTAGGTATGTATTTGGTGCAGgtgagtcagcctatcccttagctccctgccaggcttgattctggcctagg Alignment from GeneWise CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG aagctcctatggccagtataaccatgatcctgtgttcttgtctgtctcagTGTGTGTGAGGAGGAGCCACCAGTTGGTGGTGAGGAGGCTGGTAATATCACTTTAGGGCAGTACCTCCACCAACAGGCACACCACCAGAACCTTCCTATGTTTGTAGGTATGTATTTGGTGCAGgtgagtcagcctatcccttagctccctgccaggcttgattctggcctagg #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTC-GTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC cagatggaagtctaacctggacaactctcaaattctcattcaccctctagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCTGAGTTACGTGGCAC-TATGATCCCTAAAGTAGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtgagagccctattcttcctaggatatcttagtttctggacccctttcta Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC cagatggaagtctaacctggacaactctcaaattctcattcaccctctagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCTGAGTTACGTGGCACTATGATCCCTAAAGTAGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtgagagccctattcttcctaggatatcttagtttctggacccctttcta Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC cagatggaagtctaacctggacaactctcaaattctcattcaccctctagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCTGAGTTACGTGGCACTATGATCCCTAAAGTAGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtgagagccctattcttcctaggatatcttagtttctggacccctttcta Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC cagatggaagtctaacctggacaactctcaaattctcattcaccctctagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCTGAGTTACGTGGCACTATGATCCCTAAAGTAGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtgagagccctattcttcctaggatatcttagtttctggacccctttcta Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTT-CGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC cagatggaagtctaacctggacaactctcaaattctcattcaccctctagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCTGAGTTACGTGGCAC-TATGATCCCTAAAGTAGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtgagagccctattcttcctaggatatcttagtttctggacccctttcta Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC cagatggaagtctaacctggacaactctcaaattctcattcaccctctagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCTGAGTTACGTGGCACTATGATCCCTAAAGTAGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtgagagccctattcttcctaggatatcttagtttctggacccctttcta Alignment from Exonerate_coding2genome cagatggaagtctaacctggacaactctcaaattctcattcaccctctaggcaactgaagtctgtattaaccctgtggaatttaaccctgagttacgtggcactatgatccctaaagtagagtgggcagcacttgttcgggctgcagatactgtgagagccctattcttcctaggatatcttagtttctggacccctttcta Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC cagatggaagtctaacctggacaactctcaaattctcattcaccctctagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCTGAGTTACGTGGCACTATGATCCCTAAAGTAGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtgagagccctattcttcctaggatatcttagtttctggacccctttcta #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCA---CAA------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCAC------TTGGCCTCAGGATTGCCTGGG-GACCCTGGTGTCATCAGCg tgtatgttagaggggaacttcttgctgcacaaatgtctattattttgcagGTCCCTAAGTTGGAGCTTACGCCCCTGGACACCCCACAACAAGCCTTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCA---CGACC-AGGCACCATCAGTggtgcgttctaattaccctatcatgatgcatggatagacaaagcctcattt Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACA------CACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg tgtatgttagaggggaacttcttgctgcacaaatgtctattattttgcagGTCCCTAAGTTGGAGCTTACGCCCCTGGACACCCCACAACAAGCCTTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCACGA---CCAGGCACCATCAGTggtgcgttctaattaccctatcatgatgcatggatagacaaagcctcattt Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACA------CACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG tgtatgttagaggggaacttcttgctgcacaaatgtctattattttgcagGTCCCTAAGTTGGAGCTTACGCCCCTGGACACCCCACAACAAGCCTTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCACGA---CCAGGCACCATCAGTGgtgcgttctaattaccctatcatgatgcatggatagacaaagcctcattt Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAG---------CCCTGCCCTTGACACTAGTCCATGGTACATTCTGGA---AGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCA-CTTG-----GCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG tgtatgttagaggggaacttcttgctgcacaaatgtctattattttgcagGTCCCTAAGTTGGAGCTTACGCCCCTGGACACCCCACAACAAGCCTTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGG---GTCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCACG---ACCAGGCACCATCAGTGgtgcgttctaattaccctatcatgatgcatggatagacaaagcctcattt Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTG----------------GCCTCAGGATTGCCTGGGGAC--CCTGGTGTCATCAGCG tgtatgttagaggggaacttcttgctgcacaaatgtctattattttgcagGTCCCTAAGTTGGAGCTTACGCCCCTGGACACCCCACAACAAGCCTTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGG---GTCACATCAAGGAAGG----------ACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCC-----ACGACCAGGCACCATCAGTGgtgcgttctaattaccctatcatgatgcatggatagacaaagcctcattt Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACA------CACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG tgtatgttagaggggaacttcttgctgcacaaatgtctattattttgcagGTCCCTAAGTTGGAGCTTACGCCCCTGGACACCCCACAACAAGCCTTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCA---CGACCAGGCACCATCAGTGgtgcgttctaattaccctatcatgatgcatggatagacaaagcctcattt Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACA------CACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCGGC tgtatgttagaggggaacttcttgctgcacaaatgtctattattttgcagGTCCCTAAGTTGGAGCTTACGCCCCTGGACACCCCACAACAAGCCTTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCA---CGACCAGGCACCATCAGTGGTgcgttctaattaccctatcatgatgcatggatagacaaagcctcattt Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCC---------CTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACA------CACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCGGC-- tgtatgttagaggggaacttcttgctgcacaaatgtctattattttgcagGTCCCTAAGTTGGAGCTTACGCCCCTGGACACCCCACAACAAGCCTTGCCCCTGCCCCTAGCACTAGTCCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCA---CGACCAGGCACCATCAGTGGTGCgttctaattaccctatcatgatgcatggatagacaaagcctcattt #### Ubxn1_ID2442_6 --> 1 - 0 Original Alignment aCAAAGGGTTCGAGAAAAAATTGAAAGGGAC-AAAGCAGAGAGAGCCAAGAAG atttgttttgtgtctatgttgttttatacccaccgtccttggctctccagaCAGAGAACTCGTGAAATGATTGAAAGAGACCAGAG-TGAAAGGACTAAAAAGgtgattgatcccaaaatttgtactcacctaggagggaatctaggtaactt Alignment from CESAR aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG atttgttttgtgtctatgttgttttatacccaccgtccttggctctccagaCAGAGAACTCGTGAAATGATTGAAAGAGACCAGAGTGAAAGGACTAAAAAGgtgattgatcccaaaatttgtactcacctaggagggaatctaggtaactt Alignment from Spaln_aa2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG atttgttttgtgtctatgttgttttatacccaccgtccttggctctccagACAGAGAACTCGTGAAATGATTGAAAGAGACCAGAGTGAAAGGACTAAAAAGgtgattgatcccaaaatttgtactcacctaggagggaatctaggtaactt Alignment from Spaln_nt2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG atttgttttgtgtctatgttgttttatacccaccgtccttggctctccagACAGAGAACTCGTGAAATGATTGAAAGAGACCAGAGTGAAAGGACTAAAAAGgtgattgatcccaaaatttgtactcacctaggagggaatctaggtaactt Alignment from Pairagon ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG atttgttttgtgtctatgttgttttatacccaccgtccttggctctccagACAGAGAACTCGTGAAATGATTGAAAGAGACCAGAGTGAAAGGACTAAAAAGgtgattgatcccaaaatttgtactcacctaggagggaatctaggtaactt Alignment from Exonerate_protein2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG atttgttttgtgtctatgttgttttatacccaccgtccttggctctccagACAGAGAACTCGTGAAATGATTGAAAGAGACCAGAGTGAAAGGACTAAAAAGgtgattgatcccaaaatttgtactcacctaggagggaatctaggtaactt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG atttgttttgtgtctatgttgttttatacccaccgtccttggctctccagACAGAGAACTCGTGAAATGATTGAAAGAGACCAGAGTGAAAGGACTAAAAAGgtgattgatcccaaaatttgtactcacctaggagggaatctaggtaactt #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGG-GAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGCGAGATGT-CCTGGAAGAACACAGCCAATGTGAATGCaggtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGCGAGATGTCCTGGAAGAACACAGCCAATGTGAATGCaggtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGCGAGATGTCCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGCGAGATGTCCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGG-GAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGCGAGATGT-CCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGCGAGATGTCCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGCGAGATGTCCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGCGAGATGTCCTGGAAGAACACAGCCAATGTGAATGCAGGTCTGAGACAATTCCAGGACCCATGGTCTGGCATGTgttagggccgcatg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAG-CGCTGTGGTGGCTGC---TGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagtgGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCCGCTGTA-TGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGC---TGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagtgGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCCGCTGTATGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGC---TGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCCGCTGTATGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGC-GCTGT--GGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCCGCTGTATGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGT---GACTGTGCAG-CGCTG--TGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCCGCTGTATGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGT---GGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCCGCTGTATGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGT---GGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCCGCTGTATGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGC---CCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCCGCTGTATGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGC-GGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aaatggatatagaaaacaagcaattgggcagtggctcttctctctctcagacATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGACCGGTTACAAGT-CGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAggtagtaaagtaactgagcaataatacgaggtttggagtgtaacttactgt Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aaatggatatagaaaacaagcaattgggcagtggctcttctctctctcagacATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGACCGGTTACAAGTCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAggtagtaaagtaactgagcaataatacgaggtttggagtgtaacttactgt Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaagcaattgggcagtggctcttctctctctcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGACCGGTTACAAGTCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtagtaaagtaactgagcaataatacgaggtttggagtgtaacttactgt Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaagcaattgggcagtggctcttctctctctcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGACCGGTTACAAGTCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtagtaaagtaactgagcaataatacgaggtttggagtgtaacttactgt Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGG-CGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaagcaattgggcagtggctcttctctctctcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGACCGGTTACAAGT-CGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtagtaaagtaactgagcaataatacgaggtttggagtgtaacttactgt Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaagcaattgggcagtggctcttctctctctcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGACCGGTTACAAGTCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtagtaaagtaactgagcaataatacgaggtttggagtgtaacttactgt Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aaatggatatagaaaacaagcaattgggcagtggctcttctctctctcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGACCGGTTACAAGTCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtagtaaagtaactgagcaataatacgaggtttggagtgtaacttactgt Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGGC- aaatggatatagaaaacaagcaattgggcagtggctcttctctctctcagACATTGATGAATGCCAAAACCCAGGTATCTGTGGCCAGATCTGTATCAACTTAAAAGACCGGTTACAAGTCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGGTAgtaaagtaactgagcaataatacgaggtttggagtgtaacttactgt #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTG-TTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atggcacttttcaagtaaataaatttttttcttccccgcccgcctcccaggcAAAGAGCCAAGTCTGATATTCACTAATCGAAGAGACATCAGAAAGATCGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTGGCTCTTGATGCAGAAATTGCAGCTCAAAAGCTACTTTTGGG-TGATTTTAGCCAGCAGGCTATTTTCaggtaaggtaaatcagcctttcacagatgtctgggaagcatgcttagtggca Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atggcacttttcaagtaaataaatttttttcttccccgcccgcctcccaggcAAAGAGCCAAGTCTGATATTCACTAATCGAAGAGACATCAGAAAGATCGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTGGCTCTTGATGCAGAAATTGCAGCTCAAAAGCTACTTTTGGGTGATTTTAGCCAGCAGGCTATTTTCaggtaaggtaaatcagcctttcacagatgtctgggaagcatgcttagtggca Alignment from Spaln_aa2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaataaatttttttcttccccgcccgcctcccagGCAAAGAGCCAAGTCTGATATTCACTAATCGAAGAGACATCAGAAAGATCGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTGGCTCTTGATGCAGAAATTGCAGCTCAAAAGCTACTTTTGGGTGATTTTAGCCAGCAGGCTATTTTCAGgtaaggtaaatcagcctttcacagatgtctgggaagcatgcttagtggca Alignment from Spaln_nt2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaataaatttttttcttccccgcccgcctcccagGCAAAGAGCCAAGTCTGATATTCACTAATCGAAGAGACATCAGAAAGATCGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTGGCTCTTGATGCAGAAATTGCAGCTCAAAAGCTACTTTTGGGTGATTTTAGCCAGCAGGCTATTTTCAGgtaaggtaaatcagcctttcacagatgtctgggaagcatgcttagtggca Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaataaatttttttcttccccgcccgcctcccagGCAAAGAGCCAAGTCTGATATTCACTAATCGAAGAGACATCAGAAAGATCGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTGGCTCTTGATGCAGAAATTGCAGCTCAAAAGCTACTTTTGGGTGATTTTAGCCAGCAGGCTATTTTCAGgtaaggtaaatcagcctttcacagatgtctgggaagcatgcttagtggca Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaataaatttttttcttccccgcccgcctcccagGCAAAGAGCCAAGTCTGATATTCACTAATCGAAGAGACATCAGAAAGATCGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTGGCTCTTGATGCAGAAATTGCAGCTCAAAAGCTACTTTTGGGTGATTTTAGCCAGCAGGCTATTTTCAGgtaaggtaaatcagcctttcacagatgtctgggaagcatgcttagtggca Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaataaatttttttcttccccgcccgcctcccagGCAAAGAGCCAAGTCTGATATTCACTAATCGAAGAGACATCAGAAAGATCGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTGGCTCTTGATGCAGAAATTGCAGCTCAAAAGCTACTTTTGGGTGATTTTAGCCAGCAGGCTATTTTCAGgtaaggtaaatcagcctttcacagatgtctgggaagcatgcttagtggca Alignment from GeneWise CCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaataaatttttttcttccccgcccgcctcccaggcaaagagCCAAGTCTGATATTCACTAATCGAAGAGACATCAGAAAGATCGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTGGCTCTTGATGCAGAAATTGCAGCTCAAAAGCTACTTTTGGGTGATTTTAGCCAGCAGGCTATTTTCAGgtaaggtaaatcagcctttcacagatgtctgggaagcatgcttagtggca #### Vps13a_ID4057_66 --> 0 - 1 Original Alignment GGTTTTGTAAGTGGCATTACAGGGATT-GTTACAAAGCCAATTAAAg caacaaaaggtgggctgttacaattctattaatcttggttttggtttaagGGTTTTGTAAGTGGTATTACTGGCATTCGTTT-AGAACCAATAAAAggtaggacctgatatatctcttgcttatatcattcctatttgggcatagtt Alignment from CESAR GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAg caacaaaaggtgggctgttacaattctattaatcttggttttggtttaagGGTTTTGTAAGTGGTATTACTGGCATTCGTTTAGAACCAATAAAAggtaggacctgatatatctcttgcttatatcattcctatttgggcatagtt Alignment from Spaln_aa2Genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG caacaaaaggtgggctgttacaattctattaatcttggttttggtttaagGGTTTTGTAAGTGGTATTACTGGCATTCGTTTAGAACCAATAAAAGgtaggacctgatatatctcttgcttatatcattcctatttgggcatagtt Alignment from Spaln_nt2Genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG caacaaaaggtgggctgttacaattctattaatcttggttttggtttaagGGTTTTGTAAGTGGTATTACTGGCATTCGTTTAGAACCAATAAAAGgtaggacctgatatatctcttgcttatatcattcctatttgggcatagtt Alignment from Pairagon GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG caacaaaaggtgggctgttacaattctattaatcttggttttggtttaagGGTTTTGTAAGTGGTATTACTGGCATTCGTTTAGAACCAATAAAAGgtaggacctgatatatctcttgcttatatcattcctatttgggcatagtt Alignment from Exonerate_protein2genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG caacaaaaggtgggctgttacaattctattaatcttggttttggtttaagGGTTTTGTAAGTGGTATTACTGGCATTCGTTTAGAACCAATAAAAGgtaggacctgatatatctcttgcttatatcattcctatttgggcatagtt Alignment from Exonerate_coding2genome caacaaaaggtgggctgttacaattctattaatcttggttttggtttaagggttttgtaagtggtattactggcattcgtttagaaccaataaaaggtaggacctgatatatctcttgcttatatcattcctatttgggcatagtt Alignment from GeneWise GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG caacaaaaggtgggctgttacaattctattaatcttggttttggtttaagGGTTTTGTAAGTGGTATTACTGGCATTCGTTTAGAACCAATAAAAGgtaggacctgatatatctcttgcttatatcattcctatttgggcatagtt #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAA-GGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaaggtGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAACGGAGTAG-AGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaaggtGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAACGGAGTAGAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAACGGAGTAGAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAACGGAGTAGAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAA-GGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAACGGAGTAG-AGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAACGGAGTAGAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Exonerate_coding2genome acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaaggtgggctagctagtgctgcctctaaactgactagcgctatgtcgaaacggagtagagccatgaccatggatgaagactaccagcagaaaagaaaagaagcaatgaataagcggccagctggactaagagagggcatcacccgaggagggaaaggtttagtctctgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAACGGAGTAGAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTA-GGATTGAAAGCACTAGTTGGTGGAGCCGTTg gacagtggtgtcacctcagattttcatcctctcgcttctcccacctctagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGGCATTACGGATTAA-AGCACTGATTGGTGGAGCTGTTggtgagtgtaacaggattagtgatgcaagtatcaagtaacaccagtgagga Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg gacagtggtgtcacctcagattttcatcctctcgcttctcccacctctagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGGCATTACGGATTAAAGCACTGATTGGTGGAGCTGTTggtgagtgtaacaggattagtgatgcaagtatcaagtaacaccagtgagga Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtggtgtcacctcagattttcatcctctcgcttctcccacctctagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGGCATTACGGATTAAAGCACTGATTGGTGGAGCTGTTGgtgagtgtaacaggattagtgatgcaagtatcaagtaacaccagtgagga Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtggtgtcacctcagattttcatcctctcgcttctcccacctctagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGGCATTACGGATTAAAGCACTGATTGGTGGAGCTGTTGgtgagtgtaacaggattagtgatgcaagtatcaagtaacaccagtgagga Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtggtgtcacctcagattttcatcctctcgcttctcccacctctagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGGCATTACGGATTAAAGCACTGATTGGTGGAGCTGTTGgtgagtgtaacaggattagtgatgcaagtatcaagtaacaccagtgagga Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtggtgtcacctcagattttcatcctctcgcttctcccacctctagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGGCATTACGGATTAAAGCACTGATTGGTGGAGCTGTTGgtgagtgtaacaggattagtgatgcaagtatcaagtaacaccagtgagga Alignment from Exonerate_coding2genome gacagtggtgtcacctcagattttcatcctctcgcttctcccacctctagggggctatccaaggtcctgaggaatttgtagcaggaatggcattacggattaaagcactgattggtggagctgttggtgagtgtaacaggattagtgatgcaagtatcaagtaacaccagtgagga Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtggtgtcacctcagattttcatcctctcgcttctcccacctctagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGGCATTACGGATTAAAGCACTGATTGGTGGAGCTGTTGgtgagtgtaacaggattagtgatgcaagtatcaagtaacaccagtgagga #### Vps13a_ID4067_56 --> 0 - 0 Original Alignment GTT----------CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaattgctccagtatctcctgttttacagGTTCATATAACACCATCTAA-CCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACGATAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgagcttgagaatggaatgaggacaagaatgacattaatgtgtgccaaa Alignment from CESAR GTTCGTTTAACA---------CCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaattgctccagtatctcctgttttacagGTTCATATAACACCATCTAACCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACGATAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgagcttgagaatggaatgaggacaagaatgacattaatgtgtgccaaa Alignment from Spaln_aa2Genome GTTCGTTTAACA---------CCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaattgctccagtatctcctgttttacagGTTCATATAACACCATCTAACCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACGATAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgagcttgagaatggaatgaggacaagaatgacattaatgtgtgccaaa Alignment from Spaln_nt2Genome GTTCGTTTAACACC---------TAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaattgctccagtatctcctgttttacagGTTCATATAACACCATCTAACCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACGATAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgagcttgagaatggaatgaggacaagaatgacattaatgtgtgccaaa Alignment from Pairagon GTTCGTTTAACA---------CCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaattgctccagtatctcctgttttacagGTTCATATAACACCATCTAACCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACGATAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgagcttgagaatggaatgaggacaagaatgacattaatgtgtgccaaa Alignment from Exonerate_protein2genome GTTCGTTTAACA---------CCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaattgctccagtatctcctgttttacagGTTCATATAACACCATCTAACCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACGATAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgagcttgagaatggaatgaggacaagaatgacattaatgtgtgccaaa Alignment from Exonerate_coding2genome tcacaaaaacacacaacaaccaaattgctccagtatctcctgttttacaggttcatataacaccatctaaccctagtggcaatgatatgaggattttgcaaactcgccttatacctgtgcgtagaaactatcttccagcgctaaagatagcatacaatacgatagtacatcagtgggcatttcggattcagatttataggattcaggtgagcttgagaatggaatgaggacaagaatgacattaatgtgtgccaaa Alignment from GeneWise GTTCGTTTAACACCTAGT---------GGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG tcacaaaaacacacaacaaccaaattgctccagtatctcctgttttacagGTTCATATAACACCATCTAACCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACTATCTTCCAGCGCTAAAGATAGCATACAATACGATAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgagcttgagaatggaatgaggacaagaatgacattaatgtgtgccaaa #### Vps13a_ID4068_55 --> 1 - 0 Original Alignment tTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGGAGTACACAGAGGCCTCGCCCTTGGAG-GACAAAGTGGTCGAGTTGGACAACATTCCG cacctgtcaggattttctgtgcaagtattgccctttttatccccctacagtACTGATGTGGTCTGGGAGGCAAAGCCAAAGGAGAAGACCAGGTGGAAACCCATG---ATCAAGCACACAGTTAAGTTAGAGAAGGGGTTTAGGGCATACATGGAGGCCTCACCATTGGAGCGACA-GGTGGTGGAGTTGGACAACATCCCAgtatgctctatcttgtgctgcttgtgtacaatacttgagtaatgatcttc Alignment from CESAR tTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGGAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG cacctgtcaggattttctgtgcaagtattgccctttttatccccctacagtACTGATGTGGTCTGGGAGGCAAAGCCAAAGGAGAAGACCAGGTGGAAACCCATG---ATCAAGCACACAGTTAAGTTAGAGAAGGGGTTTAGGGCATACATGGAGGCCTCACCATTGGAGCGACAGGTGGTGGAGTTGGACAACATCCCAgtatgctctatcttgtgctgcttgtgtacaatacttgagtaatgatcttc Alignment from Spaln_aa2Genome TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGGAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG cacctgtcaggattttctgtgcaagtattgccctttttatccccctacagTACTGATGTGGTCTGGGAGGCAAAGCCAAAGGAGAAGACCAGGTGGAAACCCATG---ATCAAGCACACAGTTAAGTTAGAGAAGGGGTTTAGGGCATACATGGAGGCCTCACCATTGGAGCGACAGGTGGTGGAGTTGGACAACATCCCAgtatgctctatcttgtgctgcttgtgtacaatacttgagtaatgatcttc Alignment from Spaln_nt2Genome TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGGAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG cacctgtcaggattttctgtgcaagtattgccctttttatccccctacagTACTGATGTGGTCTGGGAGGCAAAGCCAAAGGAGAAGACCAGGTGGAAACCCATGA---TCAAGCACACAGTTAAGTTAGAGAAGGGGTTTAGGGCATACATGGAGGCCTCACCATTGGAGCGACAGGTGGTGGAGTTGGACAACATCCCAgtatgctctatcttgtgctgcttgtgtacaatacttgagtaatgatcttc Alignment from Pairagon TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGGAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG cacctgtcaggattttctgtgcaagtattgccctttttatccccctacagTACTGATGTGGTCTGGGAGGCAAAGCCAAAGGAGAAGACCAGGTGGAAACCCATGA---TCAAGCACACAGTTAAGTTAGAGAAGGGGTTTAGGGCATACATGGAGGCCTCACCATTGGAGCGACAGGTGGTGGAGTTGGACAACATCCCAgtatgctctatcttgtgctgcttgtgtacaatacttgagtaatgatcttc Alignment from Exonerate_protein2genome TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGGAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG cacctgtcaggattttctgtgcaagtattgccctttttatccccctacagTACTGATGTGGTCTGGGAGGCAAAGCCAAAGGAGAAGACCAGGTGGAAACCCATG---ATCAAGCACACAGTTAAGTTAGAGAAGGGGTTTAGGGCATACATGGAGGCCTCACCATTGGAGCGACAGGTGGTGGAGTTGGACAACATCCCAgtatgctctatcttgtgctgcttgtgtacaatacttgagtaatgatcttc Alignment from Exonerate_coding2genome cacctgtcaggattttctgtgcaagtattgccctttttatccccctacagtactgatgtggtctgggaggcaaagccaaaggagaagaccaggtggaaacccatgatcaagcacacagttaagttagagaaggggtttagggcatacatggaggcctcaccattggagcgacaggtggtggagttggacaacatcccagtatgctctatcttgtgctgcttgtgtacaatacttgagtaatgatcttc Alignment from GeneWise TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGGAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG cacctgtcaggattttctgtgcaagtattgccctttttatccccctacagTACTGATGTGGTCTGGGAGGCAAAGCCAAAGGAGAAGACCAGGTGGAAACCCATG---ATCAAGCACACAGTTAAGTTAGAGAAGGGGTTTAGGGCATACATGGAGGCCTCACCATTGGAGCGACAGGTGGTGGAGTTGGACAACATCCCAgtatgctctatcttgtgctgcttgtgtacaatacttgagtaatgatcttc #### Vps13a_ID4109_14 --> 0 - 0 Original Alignment GAGTTGGAGAAAACTTTGGATGTTTTT-AATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatagactgaccacttcgtgtgtttcagGAGTTGGAGAAAACTTTGGATGTTTTGCAACATGC-TATAAGTAGACAGCAAGCAGAGGTTGAAgtgagtccactctgtcatttaaatgatcatgagccattttatttcttctc Alignment from CESAR GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatagactgaccacttcgtgtgtttcagGAGTTGGAGAAAACTTTGGATGTTTTGCAACATGCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgagtccactctgtcatttaaatgatcatgagccattttatttcttctc Alignment from Spaln_aa2Genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatagactgaccacttcgtgtgtttcagGAGTTGGAGAAAACTTTGGATGTTTTGCAACATGCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgagtccactctgtcatttaaatgatcatgagccattttatttcttctc Alignment from Spaln_nt2Genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatagactgaccacttcgtgtgtttcagGAGTTGGAGAAAACTTTGGATGTTTTGCAACATGCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgagtccactctgtcatttaaatgatcatgagccattttatttcttctc Alignment from Pairagon GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGC-------------TAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatagactgaccacttcgtgtgtttcagGAGTTGGAGAAAACTTTGGATGTTTT-------------GCAACATGCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgagtccactctgtcatttaaatgatcatgagccattttatttcttctc Alignment from Exonerate_protein2genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatagactgaccacttcgtgtgtttcagGAGTTGGAGAAAACTTTGGATGTTTTGCAACATGCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgagtccactctgtcatttaaatgatcatgagccattttatttcttctc Alignment from Exonerate_coding2genome ctaatattaggagggttttatctatagactgaccacttcgtgtgtttcaggagttggagaaaactttggatgttttgcaacatgctataagtagacagcaagcagaggttgaagtgagtccactctgtcatttaaatgatcatgagccattttatttcttctc Alignment from GeneWise GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatagactgaccacttcgtgtgtttcagGAGTTGGAGAAAACTTTGGATGTTTTGCAACATGCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgagtccactctgtcatttaaatgatcatgagccattttatttcttctc #### Vps13a_ID4110_13 --> 1 - 0 Original Alignment gTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCT-GAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacaggTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCCGAAATTC-CATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from CESAR gTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacaggTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCCGAAATTCCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Spaln_aa2Genome GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCCGAAATTCCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Spaln_nt2Genome GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCT-GAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCCGAAATTC-CATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Pairagon GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCCGAAATTCCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Exonerate_protein2genome GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCCGAAATTCCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Exonerate_coding2genome atattacaaataatgaaggtgttctatcacaacatcctcccaccttacaggtgtgcttatgctatacatagtattcttgaagtaaatgtttgtcccagtttacagatgtggtcgtgggagcatatcagaaaccatagatacaaaatgaaacgatacagagaattttataagaaaaaattaaccagcaagaagccatcgccccgaaattccatgtctttggaggttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from GeneWise GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCCGAAATTCCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAA-AACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tagctaacattactggtgagaccaacccacttaacttcccatgtttctaggtAGCCTTAGACTTAAAATCCCATGGAAACAACCTTT-TACTCAACCTGTTGGAGCGGTTCTGGAAGAAATCTTTTTACTCATAATACCTTCTTCTagtgaggtacttaaagtaggtcaaagcttttgctttttcccaggtctagct Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tagctaacattactggtgagaccaacccacttaacttcccatgtttctaggtAGCCTTAGACTTAAAATCCCATGGAAACAACCTTTTACTCAACCTGTTGGAGCGGTTCTGGAAGAAATCTTTTTACTCATAATACCTTCTTCTagtgaggtacttaaagtaggtcaaagcttttgctttttcccaggtctagct Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tagctaacattactggtgagaccaacccacttaacttcccatgtttctagGTAGCCTTAGACTTAAAATCCCATGGAAACAACCTTTTACTCAACCTGTTGGAGCGGTTCTGGAAGAAATCTTTTTACTCATAATACCTTCTTCTAgtgaggtacttaaagtaggtcaaagcttttgctttttcccaggtctagct Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tagctaacattactggtgagaccaacccacttaacttcccatgtttctagGTAGCCTTAGACTTAAAATCCCATGGAAACAACCTTTTACTCAACCTGTTGGAGCGGTTCTGGAAGAAATCTTTTTACTCATAATACCTTCTTCTAgtgaggtacttaaagtaggtcaaagcttttgctttttcccaggtctagct Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tagctaacattactggtgagaccaacccacttaacttcccatgtttctagGTAGCCTTAGACTTAAAATCCCATGGAAACAACCTTTTACTCAACCTGTTGGAGCGGTTCTGGAAGAAATCTTTTTACTCATAATACCTTCTTCTAgtgaggtacttaaagtaggtcaaagcttttgctttttcccaggtctagct Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tagctaacattactggtgagaccaacccacttaacttcccatgtttctagGTAGCCTTAGACTTAAAATCCCATGGAAACAACCTTTTACTCAACCTGTTGGAGCGGTTCTGGAAGAAATCTTTTTACTCATAATACCTTCTTCTAgtgaggtacttaaagtaggtcaaagcttttgctttttcccaggtctagct Alignment from Exonerate_coding2genome tagctaacattactggtgagaccaacccacttaacttcccatgtttctaggtagccttagacttaaaatcccatggaaacaaccttttactcaacctgttggagcggttctggaagaaatctttttactcataataccttcttctagtgaggtacttaaagtaggtcaaagcttttgctttttcccaggtctagct Alignment from GeneWise GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tagctaacattactggtgagaccaacccacttaacttcccatgtttctagGTAGCCTTAGACTTAAAATCCCATGGAAACAACCTTTTACTCAACCTGTTGGAGCGGTTCTGGAAGAAATCTTTTTACTCATAATACCTTCTTCTAgtgaggtacttaaagtaggtcaaagcttttgctttttcccaggtctagct #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAG-CAAGGGGCCACTTGCCCAg atgctcatttatctctgcaaccaggcattttaatacgtttatttttgtagccCTCTGTTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACCAAG-TGCTACATGCCCAggtaagtggtgtgaaataagaaggtctgcataataaagttcttgtactggg Alignment from CESAR ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg atgctcatttatctctgcaaccaggcattttaatacgtttatttttgtagccCTCTGTTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACCAAGTGCTACATGCCCAggtaagtggtgtgaaataagaaggtctgcataataaagttcttgtactggg Alignment from Spaln_aa2Genome CTGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG ctcatttatctctgcaaccaggcattttaatacgtttatttttgta gCCCTCTGTTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACCAAGTGCTACATGCCCAGgtaagtggtgtgaaataagaaggtctgcataataaagttcttgtactggg Alignment from Spaln_nt2Genome TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG atgctcatttatctctgcaaccaggcattttaatacgtttatttttgtag---CCCTCTGTTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACCAAGTGCTACATGCCCAGgtaagtggtgtgaaataagaaggtctgcataataaagttcttgtactggg Alignment from Pairagon TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG atgctcatttatctctgcaaccaggcattttaatacgtttatttttgtag---CCCTCTGTTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACCAAGTGCTACATGCCCAGgtaagtggtgtgaaataagaaggtctgcataataaagttcttgtactggg Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG atgctcatttatctctgcaaccaggcattttaatacgtttatttttgtagCCCTCTGTTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACCAAGTGCTACATGCCCAGgtaagtggtgtgaaataagaaggtctgcataataaagttcttgtactggg Alignment from Exonerate_coding2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG atgctcatttatctctgcaaccaggcattttaatacgtttatttttgtagCCCTCTGTTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACCAAGTGCTACATGCCCAGgtaagtggtgtgaaataagaaggtctgcataataaagttcttgtactggg Alignment from GeneWise TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG atgctcatttatctctgcaaccaggcattttaatacgtttatttttgtagCC---CTCTGTTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACCAAGTGCTACATGCCCAGgtaagtggtgtgaaataagaaggtctgcataataaagttcttgtactggg #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcgcagactcccctgcccttgctcttttgcttcactctggacagacTGTAATTTTGAAGGGAGACAAGG-AGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaaatgggagagggaacccggagctaacagtttgccctcatggacttac Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcgcagactcccctgcccttgctcttttgcttcactctggacagacTGTAATTTTGAAGGGAGACAAGGAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaaatgggagagggaacccggagctaacagtttgccctcatggacttac Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcgcagactcccctgcccttgctcttttgcttcactctggacagACTGTAATTTTGAAGGGAGACAAGGAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaaatgggagagggaacccggagctaacagtttgccctcatggacttac Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcgcagactcccctgcccttgctcttttgcttcactctggacagACTGTAATTTTGAAGGGAGACAAGGAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaaatgggagagggaacccggagctaacagtttgccctcatggacttac Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcgcagactcccctgcccttgctcttttgcttcactctggacagACTGTAATTTTGAAGGGAGACAAGGAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaaatgggagagggaacccggagctaacagtttgccctcatggacttac Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcgcagactcccctgcccttgctcttttgcttcactctggacagACTGTAATTTTGAAGGGAGACAAGGAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaaatgggagagggaacccggagctaacagtttgccctcatggacttac Alignment from Exonerate_coding2genome actgcctcgcagactcccctgcccttgctcttttgcttcactctggacagactgtaattttgaagggagacaaggagtcaatggtcaggttttcaccttagatgatgagccctgtacccggtgcatctgccaggtaaatgggagagggaacccggagctaacagtttgccctcatggacttac Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcgcagactcccctgcccttgctcttttgcttcactctggacagACTGTAATTTTGAAGGGAGACAAGGAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaaatgggagagggaacccggagctaacagtttgccctcatggacttac #### Wdr74_ID2313_3 --> 0 - 2 Original Alignment ATCTTGGTGGGCTGTGCGGACAGA-ACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATgg ctctctcaccctactcagctcaacatgataacacgtgcgttcttttaaagGTACTAGTGGGCTGTGCGGACAGACACTGTAA-GTATTTTAATGCAAAGGAAGGCACATTCCTAAGACAGAGATACTGTCCTGGTGGGGAAGGGACATTCCGAGGTCTTACCCAAGTGGATgggtgagtgtcaatgatagtcttgcctggaatgtctaaagcgtggtgtactc Alignment from CESAR ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATgg ctctctcaccctactcagctcaacatgataacacgtgcgttcttttaaagGTACTAGTGGGCTGTGCGGACAGACACTGTAAGTATTTTAATGCAAAGGAAGGCACATTCCTAAGACAGAGATACTGTCCTGGTGGGGAAGGGACATTCCGAGGTCTTACCCAAGTGGATgggtgagtgtcaatgatagtcttgcctggaatgtctaaagcgtggtgtactc Alignment from Spaln_aa2Genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG ctctctcaccctactcagctcaacatgataacacgtgcgttcttttaaagGTACTAGTGGGCTGTGCGGACAGACACTGTAAGTATTTTAATGCAAAGGAAGGCACATTCCTAAGACAGAGATACTGTCCTGGTGGGGAAGGGACATTCCGAGGTCTTACCCAAGTGGATGGgtgagtgtcaatgatagtcttgcctggaatgtctaaagcgtggtgtactc Alignment from Spaln_nt2Genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG ctctctcaccctactcagctcaacatgataacacgtgcgttcttttaaagGTACTAGTGGGCTGTGCGGACAGACACTGTAAGTATTTTAATGCAAAGGAAGGCACATTCCTAAGACAGAGATACTGTCCTGGTGGGGAAGGGACATTCCGAGGTCTTACCCAAGTGGATGGgtgagtgtcaatgatagtcttgcctggaatgtctaaagcgtggtgtactc Alignment from Pairagon ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG ctctctcaccctactcagctcaacatgataacacgtgcgttcttttaaagGTACTAGTGGGCTGTGCGGACAGACACTGTAAGTATTTTAATGCAAAGGAAGGCACATTCCTAAGACAGAGATACTGTCCTGGTGGGGAAGGGACATTCCGAGGTCTTACCCAAGTGGATGGgtgagtgtcaatgatagtcttgcctggaatgtctaaagcgtggtgtactc Alignment from Exonerate_protein2genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG ctctctcaccctactcagctcaacatgataacacgtgcgttcttttaaagGTACTAGTGGGCTGTGCGGACAGACACTGTAAGTATTTTAATGCAAAGGAAGGCACATTCCTAAGACAGAGATACTGTCCTGGTGGGGAAGGGACATTCCGAGGTCTTACCCAAGTGGATGGgtgagtgtcaatgatagtcttgcctggaatgtctaaagcgtggtgtactc Alignment from Exonerate_coding2genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG ctctctcaccctactcagctcaacatgataacacgtgcgttcttttaaagGTACTAGTGGGCTGTGCGGACAGACACTGTAAGTATTTTAATGCAAAGGAAGGCACATTCCTAAGACAGAGATACTGTCCTGGTGGGGAAGGGACATTCCGAGGTCTTACCCAAGTGGATGGgtgagtgtcaatgatagtcttgcctggaatgtctaaagcgtggtgtactc Alignment from GeneWise ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG ctctctcaccctactcagctcaacatgataacacgtgcgttcttttaaagGTACTAGTGGGCTGTGCGGACAGACACTGTAAGTATTTTAATGCAAAGGAAGGCACATTCCTAAGACAGAGATACTGTCCTGGTGGGGAAGGGACATTCCGAGGTCTTACCCAAGTGGATGGgtgagtgtcaatgatagtcttgcctggaatgtctaaagcgtggtgtactc #### Wdr74_ID2314_4 --> 1 - 0 Original Alignment cACCCTTATCACATGTGTGGAT-TCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA gctgcaaacttctatgtttcaacctactcctattctttatttcttttcaggACTCTTATTACATGTGTTGATCTCTGGAA-CCTGAGAGTGTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtaagattactcccccatcatcatagatggcttgaataagatgttaatgt Alignment from CESAR cACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA gctgcaaacttctatgtttcaacctactcctattctttatttcttttcaggACTCTTATTACATGTGTTGATCTCTGGAACCTGAGAGTGTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtaagattactcccccatcatcatagatggcttgaataagatgttaatgt Alignment from Spaln_aa2Genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA gctgcaaacttctatgtttcaacctactcctattctttatttcttttcagGACTCTTATTACATGTGTTGATCTCTGGAACCTGAGAGTGTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtaagattactcccccatcatcatagatggcttgaataagatgttaatgt Alignment from Spaln_nt2Genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA gctgcaaacttctatgtttcaacctactcctattctttatttcttttcagGACTCTTATTACATGTGTTGATCTCTGGAACCTGAGAGTGTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtaagattactcccccatcatcatagatggcttgaataagatgttaatgt Alignment from Pairagon CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA gctgcaaacttctatgtttcaacctactcctattctttatttcttttcagGACTCTTATTACATGTGTTGATCTCTGGAACCTGAGAGTGTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtaagattactcccccatcatcatagatggcttgaataagatgttaatgt Alignment from Exonerate_protein2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA gctgcaaacttctatgtttcaacctactcctattctttatttcttttcagGACTCTTATTACATGTGTTGATCTCTGGAACCTGAGAGTGTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtaagattactcccccatcatcatagatggcttgaataagatgttaatgt Alignment from Exonerate_coding2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA gctgcaaacttctatgtttcaacctactcctattctttatttcttttcagGACTCTTATTACATGTGTTGATCTCTGGAACCTGAGAGTGTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtaagattactcccccatcatcatagatggcttgaataagatgttaatgt Alignment from GeneWise CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA gctgcaaacttctatgtttcaacctactcctattctttatttcttttcagGACTCTTATTACATGTGTTGATCTCTGGAACCTGAGAGTGTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtaagattactcccccatcatcatagatggcttgaataagatgttaatgt #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCAT-GGGCAGCTGGCAGAAATTGATTTTCGGCAAg taaggcacttcaggagccacataaatcctcacacacaaattttattttagtTCTGTCATTGTGGGGAATACTCATCGGTCAGCTGG-AGAGATTGACTTTCGACAAggtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtcct Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg taaggcacttcaggagccacataaatcctcacacacaaattttattttagtTCTGTCATTGTGGGGAATACTCATCGGTCAGCTGGAGAGATTGACTTTCGACAAggtgagagtgccattgtgttcttgagaatgaatgtattctgccaaattttt Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATCGGTCAGCTGGAGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtcct Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGG-CAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATCGGTCAGCTGG-AGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtcct Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGG-CAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATCGGTCAGCTGG-AGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtcct Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATCGGTCAGCTGGAGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtcct Alignment from Exonerate_coding2genome taaggcacttcaggagccacataaatcctcacacacaaattttattttagttctgtcattgtggggaatactcatcggtcagctggagagattgactttcgacaaggtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtcct Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATCGGTCAGCTGGAGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtcct #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTGAACTGCCTT-CTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCCTCCTGT-TGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCCTCCTGTTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCCTCCTGTTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTC-TCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCCTCCTGT-TGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCT-TCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCCTCCTGTT-GGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCCTCCTGTTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Exonerate_coding2genome ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccaggtttatcttaagtgccaacttaattgtctgcctcctgttggtcgggataattgggaggtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCCTCCTGTTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt #### Wdr96_ID10341_30 --> 0 - 0 Original Alignment ACCAAGACTGCA-GAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTG---GCAGAGGACAAA tgactatgctggcttcatggcgttttagaattatttctttcttttctcagACTGAGACAGCACGAGGACA-CCAGAAATCGAGAGAAGATCTCATTGTTTTCAATGAGCACCATGACATGTTGGTGGTAGTGAAGGATAAAgtgagtcatcaccatcagaaaagggacacatcctgcagaggattcttatt Alignment from CESAR ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCA---GAGGACAAA tgactatgctggcttcatggcgttttagaattatttctttcttttctcagACTGAGACAGCACGAGGACACCAGAAATCGAGAGAAGATCTCATTGTTTTCAATGAGCACCATGACATGTTGGTGGTAGTGAAGGATAAAgtgagtcatcaccatcagaaaagggacacatcctgcagaggattcttatt Alignment from Spaln_aa2Genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTA---GTGGCAGAGGACAAA tgactatgctggcttcatggcgttttagaattatttctttcttttctcagACTGAGACAGCACGAGGACACCAGAAATCGAGAGAAGATCTCATTGTTTTCAATGAGCACCATGACATGTTGGTGGTAGTGAAGGATAAAgtgagtcatcaccatcagaaaagggacacatcctgcagaggattcttatt Alignment from Spaln_nt2Genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAG---AGGACAAA tgactatgctggcttcatggcgttttagaattatttctttcttttctcagACTGAGACAGCACGAGGACACCAGAAATCGAGAGAAGATCTCATTGTTTTCAATGAGCACCATGACATGTTGGTGGTAGTGAAGGATAAAgtgagtcatcaccatcagaaaagggacacatcctgcagaggattcttatt Alignment from Pairagon ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAG---AGGACAAA tgactatgctggcttcatggcgttttagaattatttctttcttttctcagACTGAGACAGCACGAGGACACCAGAAATCGAGAGAAGATCTCATTGTTTTCAATGAGCACCATGACATGTTGGTGGTAGTGAAGGATAAAgtgagtcatcaccatcagaaaagggacacatcctgcagaggattcttatt Alignment from Exonerate_protein2genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTA---GTGGCAGAGGACAAA tgactatgctggcttcatggcgttttagaattatttctttcttttctcagACTGAGACAGCACGAGGACACCAGAAATCGAGAGAAGATCTCATTGTTTTCAATGAGCACCATGACATGTTGGTGGTAGTGAAGGATAAAgtgagtcatcaccatcagaaaagggacacatcctgcagaggattcttatt Alignment from Exonerate_coding2genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTA---GTGGCAGAGGACAAA tgactatgctggcttcatggcgttttagaattatttctttcttttctcagACTGAGACAGCACGAGGACACCAGAAATCGAGAGAAGATCTCATTGTTTTCAATGAGCACCATGACATGTTGGTGGTAGTGAAGGATAAAgtgagtcatcaccatcagaaaagggacacatcctgcagaggattcttatt Alignment from GeneWise ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCA---GAGGACAAA tgactatgctggcttcatggcgttttagaattatttctttcttttctcagACTGAGACAGCACGAGGACACCAGAAATCGAGAGAAGATCTCATTGTTTTCAATGAGCACCATGACATGTTGGTGGTAGTGAAGGATAAAgtgagtcatcaccatcagaaaagggacacatcctgcagaggattcttatt #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGAC-AACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG ccataccaggatttccatgccttatagatccgtatctttgtgtcttgcagggGGGCAAGGCTGGCTATGGGGTGGATGCAGTGACCAATGCAG-CTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGTCAGGGCAGGATGCCCGAGCAGCCATAAACTTGCACAACAATGAAGCTGGCCACAAGgtaggtccaatagtggttgatggcatgcatcatgagacctgtcattgtag Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG ccataccaggatttccatgccttatagatccgtatctttgtgtcttgcagggGGGCAAGGCTGGCTATGGGGTGGATGCAGTGACCAATGCAGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGTCAGGGCAGGATGCCCGAGCAGCCATAAACTTGCACAACAATGAAGCTGGCCACAAGgtaggtccaatagtggttgatggcatgcatcatgagacctgtcattgtag Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG ccataccaggatttccatgccttatagatccgtatctttgtgtcttgcagGGGGGCAAGGCTGGCTATGGGGTGGATGCAGTGACCAATGCAGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGTCAGGGCAGGATGCCCGAGCAGCCATAAACTTGCACAACAATGAAGCTGGCCACAAGgtaggtccaatagtggttgatggcatgcatcatgagacctgtcattgtag Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG ccataccaggatttccatgccttatagatccgtatctttgtgtcttgcagGGGGGCAAGGCTGGCTATGGGGTGGATGCAGTGACCAATGCAGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGTCAGGGCAGGATGCCCGAGCAGCCATAAACTTGCACAACAATGAAGCTGGCCACAAGgtaggtccaatagtggttgatggcatgcatcatgagacctgtcattgtag Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG ccataccaggatttccatgccttatagatccgtatctttgtgtcttgcagGGGGGCAAGGCTGGCTATGGGGTGGATGCAGTGACCAATGCAGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGTCAGGGCAGGATGCCCGAGCAGCCATAAACTTGCACAACAATGAAGCTGGCCACAAGgtaggtccaatagtggttgatggcatgcatcatgagacctgtcattgtag Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG ccataccaggatttccatgccttatagatccgtatctttgtgtcttgcagGGGGGCAAGGCTGGCTATGGGGTGGATGCAGTGACCAATGCAGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGTCAGGGCAGGATGCCCGAGCAGCCATAAACTTGCACAACAATGAAGCTGGCCACAAGgtaggtccaatagtggttgatggcatgcatcatgagacctgtcattgtag Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG ccataccaggatttccatgccttatagatccgtatctttgtgtcttgcagGGGGGCAAGGCTGGCTATGGGGTGGATGCAGTGACCAATGCAGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGTCAGGGCAGGATGCCCGAGCAGCCATAAACTTGCACAACAATGAAGCTGGCCACAAGgtaggtccaatagtggttgatggcatgcatcatgagacctgtcattgtag Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG ccataccaggatttccatgccttatagatccgtatctttgtgtcttgcagGGGGGCAAGGCTGGCTATGGGGTGGATGCAGTGACCAATGCAGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGTCAGGGCAGGATGCCCGAGCAGCCATAAACTTGCACAACAATGAAGCTGGCCACAAGgtaggtccaatagtggttgatggcatgcatcatgagacctgtcattgtag #### Xpnpep1_ID11139_16 --> 2 - 1 Original Alignment gcCACCTTCTGGACTCCTTTGCCCGG-TCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAG------------CCCTTGGAAGCGGGCATGATCGTCACTGATg aaacctacagttcctcagcatctcaattgccccttcttatcttacaacaggaCATCTCCTGGACTCATTTGCCTGGCTCTG-CTTGTGGGACTCTGGACTTGACTTTCTACATGGAACAGGGCATGGAATTGGACCCTTTTTGAATGTTCATGAGGGGCCTTGTGGCATAGTTAGTTATAAAACTCTCTCAGACAAGCCTTTAGAAGTGACTTTAGAAACA---------ATTACTGATggtaacacactgtatacttttgctgttgtgggtggaagcctcctttaattc Alignment from CESAR gcCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATg aaacctacagttcctcagcatctcaattgccccttcttatcttacaacaggaCATCTCCTGGACTCATTTGCCTGGCTCTGCTTGTGGGACTCTGGACTTGACTTTCTACATGGAACAGGGCATGGAATTGGACCCTTTTTGAATGTTCATGAGGGGCCTTGTGGCATAGTTAGTTATAAAACTCTCTCAGACAAGCCTTTAGAAGTGACTTTAGAAACAATTACTGATggtaacacactgtatacttttgctgttgtgggtggaagcctcctttaattc Alignment from Spaln_aa2Genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATG aaacctacagttcctcagcatctcaattgccccttcttatcttacaacagGACATCTCCTGGACTCATTTGCCTGGCTCTGCTTGTGGGACTCTGGACTTGACTTTCTACATGGAACAGGGCATGGAATTGGACCCTTTTTGAATGTTCATGAGGGGCCTTGTGGCATAGTTAGTTATAAAACTCTCTCAGACAAGCCTTTAGAAGTGACTTTAGAAACAATTACTGATGgtaacacactgtatacttttgctgttgtgggtggaagcctcctttaattc Alignment from Spaln_nt2Genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATG aaacctacagttcctcagcatctcaattgccccttcttatcttacaacagGACATCTCCTGGACTCATTTGCCTGGCTCTGCTTGTGGGACTCTGGACTTGACTTTCTACATGGAACAGGGCATGGAATTGGACCCTTTTTGAATGTTCATGAGGGGCCTTGTGGCATAGTTAGTTATAAAACTCTCTCAGACAAGCCTTTAGAAGTGACTTTAGAAACAATTACTGATGgtaacacactgtatacttttgctgttgtgggtggaagcctcctttaattc Alignment from Pairagon GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCA---TCAGTTATAAAACATTCTCCGATGAGCCCTTGGAA aaacctacagttcctcagcatctcaattgccccttcttatcttacaacagGACATCTCCTGGACTCATTTGCCTGGCTCTGCTTGTGGGACTCTGGACTTGACTTTCTACATGGAACAGGGCATGGAATTGGACCCTTTTTGAATGTTCATGAGGGGCCTTGTGGCATAGTTAGTTATAAAACTCTCTCAGACAAGCCTTTAGAAgtgactttagaaacaattactgatggtaacacactgtatacttttgctgttgtgggtggaagcctcctttaattc Alignment from Exonerate_protein2genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATG aaacctacagttcctcagcatctcaattgccccttcttatcttacaacagGACATCTCCTGGACTCATTTGCCTGGCTCTGCTTGTGGGACTCTGGACTTGACTTTCTACATGGAACAGGGCATGGAATTGGACCCTTTTTGAATGTTCATGAGGGGCCTTGTGGCATAGTTAGTTATAAAACTCTCTCAGACAAGCCTTTAGAAGTGACTTTAGAAACAATTACTGATGgtaacacactgtatacttttgctgttgtgggtggaagcctcctttaattc Alignment from Exonerate_coding2genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATG aaacctacagttcctcagcatctcaattgccccttcttatcttacaacagGACATCTCCTGGACTCATTTGCCTGGCTCTGCTTGTGGGACTCTGGACTTGACTTTCTACATGGAACAGGGCATGGAATTGGACCCTTTTTGAATGTTCATGAGGGGCCTTGTGGCATAGTTAGTTATAAAACTCTCTCAGACAAGCCTTTAGAAGTGACTTTAGAAACAATTACTGATGgtaacacactgtatacttttgctgttgtgggtggaagcctcctttaattc Alignment from GeneWise GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATG aaacctacagttcctcagcatctcaattgccccttcttatcttacaacagGACATCTCCTGGACTCATTTGCCTGGCTCTGCTTGTGGGACTCTGGACTTGACTTTCTACATGGAACAGGGCATGGAATTGGACCCTTTTTGAATGTTCATGAGGGGCCTTGTGGCATAGTTAGTTATAAAACTCTCTCAGACAAGCCTTTAGAAGTGACTTTAGAAACAATTACTGATGgtaacacactgtatacttttgctgttgtgggtggaagcctcctttaattc #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCA-CTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT attcgagttgacactgaatttttaattgtgtcaattttttttcttcacaggcTCTAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACCTTT-TGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCGATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtaagtcgcccagcactgtcgtatttgtaacctcccgcagCTACACCGTT Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT attcgagttgacactgaatttttaattgtgtcaattttttttcttcacaggcTCTAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACCTTTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCGATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtaagtcgcccagcactgtctctctcactcttctctgcagCTACACCGTT Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT attcgagttgacactgaatttttaattgtgtcaattttttttcttcacagGCTCTAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACCTTTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCGATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtaagtcgcccagcactgtcgtatttgtaacctcccgcagCTACACCGTT Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT attcgagttgacactgaatttttaattgtgtcaattttttttcttcacagGCTCTAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACCTTTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCGATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtaagtcgcccagcactgtcgtatttgtaacctcccgcagCTACACCGTT Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT attcgagttgacactgaatttttaattgtgtcaattttttttcttcacagGCTCTAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACCTTTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCGATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtaagtcgcccagcactgtcgtatttgtaacctcccgcagCTACACCGTT Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT attcgagttgacactgaatttttaattgtgtcaattttttttcttcacagGCTCTAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACCTTTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCGATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtaagtcgcccagcactgtcgtatttgtaacctcccgcagCTACACCGTT Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT attcgagttgacactgaatttttaattgtgtcaattttttttcttcacagGCTCTAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACCTTTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCGATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtaagtcgcccagcactgtcgtatttgtaacctcccgcagCTACACCGTT Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT gacactgaatttttaattgtgt---------CAATTTTTTTTCTTCACAGGCTCTAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACCTTTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAGCACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCGATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtaagtcgcccagcactgtcgtatttgtaacctcccgcagCTACACCGTT #### Yif1a_ID833_5 --> 2 - 2 Original Alignment ccATGGCCTTCATCACATACGTG-CTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag gtgggaggtcctctggtggggagacaacattgttcttttggcaattttagccATGGCTTTTGTCACAGATGTGCCTAAGGGCTG-GATGGCATTTGGCATTCAGCAGaggtagtgctccagcagctcttacctgatatttttttaagccaggttttcta Alignment from CESAR ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag gtgggaggtcctctggtggggagacaacattgttcttttggcaattttagccATGGCTTTTGTCACAGATGTGCCTAAGGGCTGGATGGCATTTGGCATTCAGCAGaggtagtgctccagcagctcttacctgatatttttttaagccaggttttcta Alignment from Spaln_aa2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacaacattgttcttttggcaattttagCCATGGCTTTTGTCACAGATGTGCCTAAGGGCTGGATGGCATTTGGCATTCAGCAGAGgtagtgctccagcagctcttacctgatatttttttaagccaggttttcta Alignment from Spaln_nt2Genome CCATGGCCTTCATCACATACGTGC-TGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacaacattgttcttttggcaattttagCCATGGCTTTTGTCACAGATGTGCCTAAGGGCTGG-ATGGCATTTGGCATTCAGCAGAGgtagtgctccagcagctcttacctgatatttttttaagccaggttttcta Alignment from Pairagon CCATGGCCTTCATCACATACGTGCT-----GCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacaacattgttcttttggcaattttagCCATGGCTTTTGTCACAGATGTGCCTAAGGGCTGG-----ATGGCATTTGGCATTCAGCAGAGgtagtgctccagcagctcttacctgatatttttttaagccaggttttcta Alignment from Exonerate_protein2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacaacattgttcttttggcaattttagCCATGGCTTTTGTCACAGATGTGCCTAAGGGCTGGATGGCATTTGGCATTCAGCAGAGgtagtgctccagcagctcttacctgatatttttttaagccaggttttcta Alignment from Exonerate_coding2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacaacattgttcttttggcaattttagCCATGGCTTTTGTCACAGATGTGCCTAAGGGCTGGATGGCATTTGGCATTCAGCAGAGgtagtgctccagcagctcttacctgatatttttttaagccaggttttcta Alignment from GeneWise CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAGG-- gtgggaggtcctctggtggggagacaacattgttcttttggcaattttagCCATGGCTTTTGTCACAGATGTGCCTAAGGGCTGGATGGCATTTGGCATTCAGCAGAGGTAgtgctccagcagctcttacctgatatttttttaagccaggttttcta #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATT-GCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG aaccatggggtacacctactctgacaaccctgattctgtctctccttcagGTGTTCGTAGTGCTAGTGATTGTGCTGCCTGGTTCAATTGTAGCCATTCGCTT-TCTATGTGTTCTGCCACTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCATTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAATATTATCAAGCCATTGCTACTCCCCACAAATATCCACCTCAGgtaattactccacagtgcaagtttcactaaagacaatgctttcttgctgt Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG aaccatggggtacacctactctgacaaccctgattctgtctctccttcagGTGTTCGTAGTGCTAGTGATTGTGCTGCCTGGTTCAATTGTAGCCATTCGCTTTCTATGTGTTCTGCCACTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCATTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAATATTATCAAGCCATTGCTACTCCCCACAAATATCCACCTCAGgtaattactccacagtgcaagtttcactaaagacaatgctttcttgctgt Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG aaccatggggtacacctactctgacaaccctgattctgtctctccttcagGTGTTCGTAGTGCTAGTGATTGTGCTGCCTGGTTCAATTGTAGCCATTCGCTTTCTATGTGTTCTGCCACTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCATTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAATATTATCAAGCCATTGCTACTCCCCACAAATATCCACCTCAGgtaattactccacagtgcaagtttcactaaagacaatgctttcttgctgt Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG aaccatggggtacacctactctgacaaccctgattctgtctctccttcagGTGTTCGTAGTGCTAGTGATTGTGCTGCCTGGTTCAATTGTAGCCATTCGCTTTCTATGTGTTCTGCCACTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCATTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAATATTATCAAGCCATTGCTACTCCCCACAAATATCCACCTCAGgtaattactccacagtgcaagtttcactaaagacaatgctttcttgctgt Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG aaccatggggtacacctactctgacaaccctgattctgtctctccttcagGTGTTCGTAGTGCTAGTGATTGTGCTGCCTGGTTCAATTGTAGCCATTCGCTTTCTATGTGTTCTGCCACTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCATTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAATATTATCAAGCCATTGCTACTCCCCACAAATATCCACCTCAGgtaattactccacagtgcaagtttcactaaagacaatgctttcttgctgt Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG aaccatggggtacacctactctgacaaccctgattctgtctctccttcagGTGTTCGTAGTGCTAGTGATTGTGCTGCCTGGTTCAATTGTAGCCATTCGCTTTCTATGTGTTCTGCCACTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCATTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAATATTATCAAGCCATTGCTACTCCCCACAAATATCCACCTCAGgtaattactccacagtgcaagtttcactaaagacaatgctttcttgctgt Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG aaccatggggtacacctactctgacaaccctgattctgtctctccttcagGTGTTCGTAGTGCTAGTGATTGTGCTGCCTGGTTCAATTGTAGCCATTCGCTTTCTATGTGTTCTGCCACTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCATTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAATATTATCAAGCCATTGCTACTCCCCACAAATATCCACCTCAGgtaattactccacagtgcaagtttcactaaagacaatgctttcttgctgt Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG aaccatggggtacacctactctgacaaccctgattctgtctctccttcagGTGTTCGTAGTGCTAGTGATTGTGCTGCCTGGTTCAATTGTAGCCATTCGCTTTCTATGTGTTCTGCCACTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCATTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAATATTATCAAGCCATTGCTACTCCCCACAAATATCCACCTCAGgtaattactccacagtgcaagtttcactaaagacaatgctttcttgctgt #### Zdhhc6_ID11620_9 --> 1 - 1 Original Alignment aTACTGGTTGTAT-GGAGACAAAATTCTTGATGATTCCTTCATAGAAg gagggggttctttatctagaaactaaaattggctttgcgttgtgtggcagaTACTGGTTGTATCGGAGACA-AATTCTGGACGATTCTTTCAGAGAAggtaagttaccaagggagtatgataggttgtgattgggtgtaatgcatctt Alignment from CESAR aTACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAg gagggggttctttatctagaaactaaaattggctttgcgttgtgtggcagaTACTGGTTGTATCGGAGACAAATTCTGGACGATTCTTTCAGAGAAggtaagttaccaagggagtatgataggttgtgattgggtgtaatgcatctt Alignment from Spaln_aa2Genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctagaaactaaaattggctttgcgttgtgtggcagATACTGGTTGTATCGGAGACAAATTCTGGACGATTCTTTCAGAGAAGgtaagttaccaagggagtatgataggttgtgattgggtgtaatgcatctt Alignment from Spaln_nt2Genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctagaaactaaaattggctttgcgttgtgtggcagATACTGGTTGTATCGGAGACAAATTCTGGACGATTCTTTCAGAGAAGgtaagttaccaagggagtatgataggttgtgattgggtgtaatgcatctt Alignment from Pairagon ATACTGGTTGTAT-GGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctagaaactaaaattggctttgcgttgtgtggcagATACTGGTTGTATCGGAGAC-AAATTCTGGACGATTCTTTCAGAGAAGgtaagttaccaagggagtatgataggttgtgattgggtgtaatgcatctt Alignment from Exonerate_protein2genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctagaaactaaaattggctttgcgttgtgtggcagATACTGGTTGTATCGGAGACAAATTCTGGACGATTCTTTCAGAGAAGgtaagttaccaagggagtatgataggttgtgattgggtgtaatgcatctt Alignment from Exonerate_coding2genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctagaaactaaaattggctttgcgttgtgtggcagATACTGGTTGTATCGGAGACAAATTCTGGACGATTCTTTCAGAGAAGgtaagttaccaagggagtatgataggttgtgattgggtgtaatgcatctt Alignment from GeneWise ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctagaaactaaaattggctttgcgttgtgtggcagATACTGGTTGTATCGGAGACAAATTCTGGACGATTCTTTCAGAGAAGgtaagttaccaagggagtatgataggttgtgattgggtgtaatgcatctt #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATC-TTAGCAACGAGAGGGCTGcg ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACA---GAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACCTAG-AATGAGGGGGTTGaggtaagtggagggggttctttatctagaaactaaaattttttcttttctaa Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACA---GAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACCTAGAATGAGGGGGTTGaggtaagtggagggggttctttatctagaaactaaaattggctttgcgttgt Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACA---GAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACCTAGAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattttttcttttctaa Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCAT-CTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTAC---AGAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACCTAG-AATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattttttcttttctaa Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTAC---AGAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACCTAGAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattttttcttttctaa Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACA---GAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACCTAGAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattttttcttttctaa Alignment from Exonerate_coding2genome AACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGTGTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCC-TGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaagGGGCACCACAGTGCAGGCTTCTCAATTGTCACCTCTAGGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAG-CCCCTGTACAGAG---CCCCGAGTCCAGCTACAACAAGGTGAATTCATACCTAGAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattttttcttttctaa Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACA---GAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACCTAGAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattttttcttttctaa #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTag atagaggttgaatttttggcagtgtatgatcccattccatttccttccagatGTTACTGAAGAGCAACCGAA-CCCTGGTGGGATCaggtaagtggttgcttgctatacccaatgtttcatattacagagtgttacat Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag atagaggttgaatttttggcagtgtatgatcccattccatttccttccagatGTTACTGAAGAGCAACCGAACCCTGGTGGGATCaggtaagtggttgcttgctatacccaatgtttcatattacagagtgttacat Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgaatttttggcagtgtatgatcccattccatttccttccagATGTTACTGAAGAGCAACCGAACCCTGGTGGGATCAGgtaagtggttgcttgctatacccaatgtttcatattacagagtgttacat Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgaatttttggcagtgtatgatcccattccatttccttccagATGTTACTGAAGAGCAACCGAACCCTGGTGGGATCAGgtaagtggttgcttgctatacccaatgtttcatattacagagtgttacat Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgaatttttggcagtgtatgatcccattccatttccttccagATGTTACTGAAGAGCAACCGAACCCTGGTGGGATCAGgtaagtggttgcttgctatacccaatgtttcatattacagagtgttacat Alignment from Exonerate_protein2genome atagaggttgaatttttggcagtgtatgatcccattccatttccttccagatgttactgaagagcaaccgaaccctggtgggatcaggtaagtggttgcttgctatacccaatgtttcatattacagagtgttacat Alignment from Exonerate_coding2genome atagaggttgaatttttggcagtgtatgatcccattccatttccttccagatgttactgaagagcaaccgaaccctggtgggatcaggtaagtggttgcttgctatacccaatgtttcatattacagagtgttacat Alignment from GeneWise atagaggttgaatttttggcagtgtatgatcccattccatttccttccagatgttactgaagagcaaccgaaccctggtgggatcaggtaagtggttgcttgctatacccaatgtttcatattacagagtgttacat #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGT-TGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtctatatggtccacaggtgacacccctggttttgtattttatgttttagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCATTGCCTGCTCAT-CAAGGTACCCCGCTCCTCCATGGGTGCCACAagtgagtggaaaattgtggataggctcactgccacaaattatagtcagctc Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtctatatggtccacaggtgacacccctggttttgtattttatgttttagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCATTGCCTGCTCATCAAGGTACCCCGCTCCTCCATGGGTGCCACAagtgagtggaaaattgtggataggctcactgccacaaattatagtcagctc Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtgacacccctggttttgtattttatgttttagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCATTGCCTGCTCATCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgagtggaaaattgtggataggctcactgccacaaattatagtcagctc Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGT-TGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtgacacccctggttttgtattttatgttttagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCATTGCCTGCT-CATCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgagtggaaaattgtggataggctcactgccacaaattatagtcagctc Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTC----------CTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtgacacccctggttttgtattttatgttttagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCT----------CTCATTGCCTGCTCATCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgagtggaaaattgtggataggctcactgccacaaattatagtcagctc Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtgacacccctggttttgtattttatgttttagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCATTGCCTGCTCATCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgagtggaaaattgtggataggctcactgccacaaattatagtcagctc Alignment from Exonerate_coding2genome gtctatatggtccacaggtgacacccctggttttgtattttatgttttagcgaagctgcactaactgtgcaaatagcttctgctctcattgcctgctcatcaaggtaccccgctcctccatgggtgccacaagtgagtggaaaattgtggataggctcactgccacaaattatagtcagctc Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtgacacccctggttttgtattttatgttttagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCATTGCCTGCTCATCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgagtggaaaattgtggataggctcactgccacaaattatagtcagctc ####