#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAG-ATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGCATAA-CTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGCATAACTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGCATAACTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGCATAACTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGCATAACTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGCATAACTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGCATAACTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGCATAACTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTC-GGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCCGTGCTG-GATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTgtgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCCGTGCTGGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTgtgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCCGTGCTGGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCCGTGCTGGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGG-TCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCCGTGCTG-GATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCgtgtgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGCGTC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCCGTGCTGGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTGTAttgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGCGTC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCCGTGCTGGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTGTAttgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCCGTGCTGGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCC-CAGAAAGAAAAAGCAGCCATGGAAg tattccaaatggctgcgtgagccttatctcacagttcattcatttcatagg---TGCTCCCGTGCAAACATCACACTGTCTGGGAAGAAGCGTAGAAGACTATTACAGCAGATCCGACTTGCACCAGAAACAAG-AGCAGCTATGAAAggtaagcagagagtagtggatttttttcaacattcttgcagtgttcagctg Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg tattccaaatggctgcgtgagccttatctcacagttcattcatttcataggTGC---TCCCGTGCAAACATCACACTGTCTGGGAAGAAGCGTAGAAGACTATTACAGCAGATCCGACTTGCACCAGAAACAAGAGCAGCTATGAAAggtaagcagagagtagtggatttttttcaacattcttgcagtgttcctgac Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG tattccaaatggctgcgtgagccttatctcacagttcattcatttcatagGTGCTCC---CGTGCAAACATCACACTGTCTGGGAAGAAGCGTAGAAGACTATTACAGCAGATCCGACTTGCACCAGAAACAAGAGCAGCTATGAAAGgtaagcagagagtagtggatttttttcaacattcttgcagtgttcagctg Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGC-CCAGAAAGAAAAAGCAGCCATGGAAG tattccaaatggctgcgtgagccttatctcacagttcattcatttcatagGT---GCTCCCGTGCAAACATCACACTGTCTGGGAAGAAGCGTAGAAGACTATTACAGCAGATCCGACTTGCACCAGAAA-CAAGAGCAGCTATGAAAGgtaagcagagagtagtggatttttttcaacattcttgcagtgttcagctg Alignment from Pairagon GGGCGTCCAGTGCT--CGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG tattccaaatggctgcgtgagccttatctcacagttcattcatttcatag---------GTGCTCCCGTGCAAACATCACACTGTCTGGGAAGAAGCGTAGAAGACTATTACAGCAGATCCGACTTGCACCAGAAACAAGAGCAGCTATGAAAGgtaagcagagagtagtggatttttttcaacattcttgcagtgttcagctg Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG tattccaaatggctgcgtgagccttatctcacagttcattcatttcatagGTGCTCC---CGTGCAAACATCACACTGTCTGGGAAGAAGCGTAGAAGACTATTACAGCAGATCCGACTTGCACCAGAAACAAGAGCAGCTATGAAAGgtaagcagagagtagtggatttttttcaacattcttgcagtgttcagctg Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG tattccaaatggctgcgtgagccttatctcacagttcattcatttcatagGTGCTCC---CGTGCAAACATCACACTGTCTGGGAAGAAGCGTAGAAGACTATTACAGCAGATCCGACTTGCACCAGAAACAAGAGCAGCTATGAAAGgtaagcagagagtagtggatttttttcaacattcttgcagtgttcagctg Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAA--------------------------------------------------- tattccaaatggctgcgtgagccttatctcacagttcattcatttcatagGTGCTCC---CGTGCAAACATCACACTGTCTGGGAAGAAGCGTAGAAGACTATTACAGCAGATCCGACTTGCACCAGAAACAAGAGCAGCTATGAAAGGTAAGCAGAGAGTAGTGGATTTTTTTCAACATTCTTGCAGTGTTCAGCTG #### 2010012O05Rik_ID10003_2 --> 0 - 0 Original Alignment CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAG-GAAGATGCCATCTTACACTCGGAAGAT ctgtactatgtagaggtgggatcataacacatctttgcctctctccatagCTGCTGGGTCAGGCTGCTCGTAACATGGTACTACAACGAAGATG-TATTTTGCGCTCTGAAGATgtaaaatagctattatttcatcatatgtgtcaagattttcagatgtgcct Alignment from CESAR CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ctgtactatgtagaggtgggatcataacacatctttgcctctctccatagCTGCTGGGTCAGGCTGCTCGTAACATGGTACTACAACGAAGATGTATTTTGCGCTCTGAAGATgtaaaatagctattatttcatcatatgtgtcaagattttcagatgtgcct Alignment from Spaln_aa2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ctgtactatgtagaggtgggatcataacacatctttgcctctctccatagCTGCTGGGTCAGGCTGCTCGTAACATGGTACTACAACGAAGATGTATTTTGCGCTCTGAAGATgtaaaatagctattatttcatcatatgtgtcaagattttcagatgtgcct Alignment from Spaln_nt2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAG-GAAGATGCCATCTTACACTCGGAAGAT ctgtactatgtagaggtgggatcataacacatctttgcctctctccatagCTGCTGGGTCAGGCTGCTCGTAACATGGTACTACAACGAAGATG-TATTTTGCGCTCTGAAGATgtaaaatagctattatttcatcatatgtgtcaagattttcagatgtgcct Alignment from Pairagon CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAG-GAAGATGCCATCTTACACTCGGAAGAT ctgtactatgtagaggtgggatcataacacatctttgcctctctccatagCTGCTGGGTCAGGCTGCTCGTAACATGGTACTACAACGAAGATG-TATTTTGCGCTCTGAAGATgtaaaatagctattatttcatcatatgtgtcaagattttcagatgtgcct Alignment from Exonerate_protein2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ctgtactatgtagaggtgggatcataacacatctttgcctctctccatagCTGCTGGGTCAGGCTGCTCGTAACATGGTACTACAACGAAGATGTATTTTGCGCTCTGAAGATgtaaaatagctattatttcatcatatgtgtcaagattttcagatgtgcct Alignment from Exonerate_coding2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ctgtactatgtagaggtgggatcataacacatctttgcctctctccatagCTGCTGGGTCAGGCTGCTCGTAACATGGTACTACAACGAAGATGTATTTTGCGCTCTGAAGATgtaaaatagctattatttcatcatatgtgtcaagattttcagatgtgcct Alignment from GeneWise CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT ctgtactatgtagaggtgggatcataacacatctttgcctctctccatagCTGCTGGGTCAGGCTGCTCGTAACATGGTACTACAACGAAGATGTATTTTGCGCTCTGAAGATgtaaaatagctattatttcatcatatgtgtcaagattttcagatgtgcct #### 2010012O05Rik_ID10004_3 --> 0 - 2 Original Alignment AGTTTAAGGAAG-ATGGCAATAATAACAACACACCTTCAGTACca gagcaagaactcagatcacaggagtatgcttggttgcccatctctcacagAGCTTGAGGAAGCATGG-AATAATAACAACACACTTACAGTACcagtgagcatgcatggctaggtgggcagaggatgaaaggcacagactatacc Alignment from CESAR AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACca gagcaagaactcagatcacaggagtatgcttggttgcccatctctcacagAGCTTGAGGAAGCATGGAATAATAACAACACACTTACAGTACcagtgagcatgcatggctaggtgggcagaggatgaaaggcacagactatacc Alignment from Spaln_aa2Genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCA gagcaagaactcagatcacaggagtatgcttggttgcccatctctcacagAGCTTGAGGAAGCATGGAATAATAACAACACACTTACAGTACCAgtgagcatgcatggctaggtgggcagaggatgaaaggcacagactatacc Alignment from Spaln_nt2Genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCA gagcaagaactcagatcacaggagtatgcttggttgcccatctctcacagAGCTTGAGGAAGCATGGAATAATAACAACACACTTACAGTACCAgtgagcatgcatggctaggtgggcagaggatgaaaggcacagactatacc Alignment from Pairagon AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCA gagcaagaactcagatcacaggagtatgcttggttgcccatctctcacagAGCTTGAGGAAGCATGGAATAATAACAACACACTTACAGTACCAgtgagcatgcatggctaggtgggcagaggatgaaaggcacagactatacc Alignment from Exonerate_protein2genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAA gagcaagaactcagatcacaggagtatgcttggttgcccatctctcacagAGCTTGAGGAAGCATGGAATAATAACAACACACTTACAGTACCAGTGAGCATGCATGGCTAGGTGggcagaggatgaaaggcacagactatacc Alignment from Exonerate_coding2genome AGTTTAAGGAAGATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAA gagcaagaactcagatcacaggagtatgcttggttgcccatctctcacagAGCTTGAGGAAGCATGGAATAATAACAACACACTTACAGTACCAGTGAGCATGCATGGCTAGGTGggcagaggatgaaaggcacagactatacc Alignment from GeneWise gagcaagaactcagatcacaggagtatgcttggttgcccatctctcacagagcttgaggaagcatggaataataacaacacacttacagtaccagtgagcatgcatggctaggtgggcagaggatgaaaggcacagactatacc #### A630007B06Rik_ID12189_8 --> 0 - 0 Original Alignment ATGCATCATGCCAAAATAAAGGAGCTAGAAGAT-CTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aggaccaaaccccatttatatccctggccttaccaccaacttcattacagATGCACCATGCCAAAATAAAGGAGCTGGAAGATCCTCA-GAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtgagtaagaggaaccggtagattttataattaaaactagattactagaa Alignment from CESAR ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aggaccaaaccccatttatatccctggccttaccaccaacttcattacagATGCACCATGCCAAAATAAAGGAGCTGGAAGATCCTCAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtgagtaagaggaaccggtagattttataattaaaactagattactagaa Alignment from Spaln_aa2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aggaccaaaccccatttatatccctggccttaccaccaacttcattacagATGCACCATGCCAAAATAAAGGAGCTGGAAGATCCTCAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtgagtaagaggaaccggtagattttataattaaaactagattactagaa Alignment from Spaln_nt2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aggaccaaaccccatttatatccctggccttaccaccaacttcattacagATGCACCATGCCAAAATAAAGGAGCTGGAAGATCCTCAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtgagtaagaggaaccggtagattttataattaaaactagattactagaa Alignment from Pairagon ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aggaccaaaccccatttatatccctggccttaccaccaacttcattacagATGCACCATGCCAAAATAAAGGAGCTGGAAGATCCTCAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtgagtaagaggaaccggtagattttataattaaaactagattactagaa Alignment from Exonerate_protein2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aggaccaaaccccatttatatccctggccttaccaccaacttcattacagATGCACCATGCCAAAATAAAGGAGCTGGAAGATCCTCAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtgagtaagaggaaccggtagattttataattaaaactagattactagaa Alignment from Exonerate_coding2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aggaccaaaccccatttatatccctggccttaccaccaacttcattacagATGCACCATGCCAAAATAAAGGAGCTGGAAGATCCTCAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtgagtaagaggaaccggtagattttataattaaaactagattactagaa Alignment from GeneWise ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG aggaccaaaccccatttatatccctggccttaccaccaacttcattacagATGCACCATGCCAAAATAAAGGAGCTGGAAGATCCTCAGAGGACATTTAAGGAGGGCATGGATGAATTGCAAACATTGAGAACGAAGgtgagtaagaggaaccggtagattttataattaaaactagattactagaa #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAG-ATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC taatcattactgtttagctatgggcctcttggattcttttatttttcaagGATAGTAAGTCAAACATGACATACTCCTGTTTGTTCTTCATCTCCTCCAGTTTCCTGCATTGTGGCTT-GATTCTTTCAGCATTTTCAGAATCAAGTGACTCTACACATgtaagcaagtccatgagtatttaaaaaagggtgattctagtgaatgtcca Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC taatcattactgtttagctatgggcctcttggattcttttatttttcaagGATAGTAAGTCAAACATGACATACTCCTGTTTGTTCTTCATCTCCTCCAGTTTCCTGCATTGTGGCTTGATTCTTTCAGCATTTTCAGAATCAAGTGACTCTACACATgtaagcaagtccatgagtatttaaaaaagggtgattctagtgaatgtcca Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC taatcattactgtttagctatgggcctcttggattcttttatttttcaagGATAGTAAGTCAAACATGACATACTCCTGTTTGTTCTTCATCTCCTCCAGTTTCCTGCATTGTGGCTTGATTCTTTCAGCATTTTCAGAATCAAGTGACTCTACACATgtaagcaagtccatgagtatttaaaaaagggtgattctagtgaatgtcca Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAG-ATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC taatcattactgtttagctatgggcctcttggattcttttatttttcaagGATAGTAAGTCAAACATGACATACTCCTGTTTGTTCTTCATCTCCTCCAGTTTCCTGCATTGT-GGCTTGATTCTTTCAGCATTTTCAGAATCAAGTGACTCTACACATgtaagcaagtccatgagtatttaaaaaagggtgattctagtgaatgtcca Alignment from Pairagon GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATT-----TTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC taatcattactgtttagctatgggcctcttggattcttttatttttcaagGATAGTAAGTCAAACATGACATACTCCTGTTTGTTCTTCATCTCCTCCAGTTTCCTG-----CATTGTGGCTTGATTCTTTCAGCATTTTCAGAATCAAGTGACTCTACACATgtaagcaagtccatgagtatttaaaaaagggtgattctagtgaatgtcca Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC taatcattactgtttagctatgggcctcttggattcttttatttttcaagGATAGTAAGTCAAACATGACATACTCCTGTTTGTTCTTCATCTCCTCCAGTTTCCTGCATTGTGGCTTGATTCTTTCAGCATTTTCAGAATCAAGTGACTCTACACATgtaagcaagtccatgagtatttaaaaaagggtgattctagtgaatgtcca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC taatcattactgtttagctatgggcctcttggattcttttatttttcaagGATAGTAAGTCAAACATGACATACTCCTGTTTGTTCTTCATCTCCTCCAGTTTCCTGCATTGTGGCTTGATTCTTTCAGCATTTTCAGAATCAAGTGACTCTACACATgtaagcaagtccatgagtatttaaaaaagggtgattctagtgaatgtcca #### Abcc2_ID8838_22 --> 0 - 1 Original Alignment GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGG-ACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg tgtagaggtgtgttcacactgcacctattttgcttttgtgtgtgattcagGTCAAGCTGTCTATCTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTACGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGCGCCTGGCACAAGTG-CTCTGAAAAACAGAATAGCACTGACAATTCACCATTGCAGAGAGATATGAGAATCAGAGTATTTGGTGCTCTGGGTATTGCACAAggtaatcgtgccaagaccacaaggcctaaagtgggttacatctggttacat Alignment from CESAR GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg tgtagaggtgtgttcacactgcacctattttgcttttgtgtgtgattcagGTCAAGCTGTCTATCTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTACGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGCGCCTGGCACAAGTGCTCTGAAAAACAGAATAGCACTGACAATTCACCATTGCAGAGAGATATGAGAATCAGAGTATTTGGTGCTCTGGGTATTGCACAAggtaatcgtgccaagaccacaaggcctaaagtgggttacatctggttacat Alignment from Spaln_aa2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tgtagaggtgtgttcacactgcacctattttgcttttgtgtgtgattcagGTCAAGCTGTCTATCTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTACGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGCGCCTGGCACAAGTGCTCTGAAAAACAGAATAGCACTGACAATTCACCATTGCAGAGAGATATGAGAATCAGAGTATTTGGTGCTCTGGGTATTGCACAAGgtaatcgtgccaagaccacaaggcctaaagtgggttacatctggttacat Alignment from Spaln_nt2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tgtagaggtgtgttcacactgcacctattttgcttttgtgtgtgattcagGTCAAGCTGTCTATCTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTACGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGCGCCTGGCACAAGTGCTCTGAAAAACAGAATAGCACTGACAATTCACCATTGCAGAGAGATATGAGAATCAGAGTATTTGGTGCTCTGGGTATTGCACAAGgtaatcgtgccaagaccacaaggcctaaagtgggttacatctggttacat Alignment from Pairagon GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGG-ACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tgtagaggtgtgttcacactgcacctattttgcttttgtgtgtgattcagGTCAAGCTGTCTATCTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTACGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGCGCCTGGCACAAGTG-CTCTGAAAAACAGAATAGCACTGACAATTCACCATTGCAGAGAGATATGAGAATCAGAGTATTTGGTGCTCTGGGTATTGCACAAGgtaatcgtgccaagaccacaaggcctaaagtgggttacatctggttacat Alignment from Exonerate_protein2genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tgtagaggtgtgttcacactgcacctattttgcttttgtgtgtgattcagGTCAAGCTGTCTATCTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTACGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGCGCCTGGCACAAGTGCTCTGAAAAACAGAATAGCACTGACAATTCACCATTGCAGAGAGATATGAGAATCAGAGTATTTGGTGCTCTGGGTATTGCACAAGgtaatcgtgccaagaccacaaggcctaaagtgggttacatctggttacat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tgtagaggtgtgttcacactgcacctattttgcttttgtgtgtgattcagGTCAAGCTGTCTATCTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTTATTATCATCTTCTACGTACTGAACTATGTGGCATTCATTGGCACTAATCTATGGTTGAGCGCCTGGCACAAGTGCTCTGAAAAACAGAATAGCACTGACAATTCACCATTGCAGAGAGATATGAGAATCAGAGTATTTGGTGCTCTGGGTATTGCACAAGgtaatcgtgccaagaccacaaggcctaaagtgggttacatctggttacat #### Abcc2_ID8844_28 --> 0 - 0 Original Alignment GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGAT-CTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCCTGGTCC-GAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from CESAR GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCCTGGTCCGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Spaln_aa2Genome GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCCTGGTCCGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Spaln_nt2Genome GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATC-TGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCCTGGTCC-GAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Pairagon GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCCTGGTCCGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Exonerate_protein2genome GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCCTGGTCCGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCCTGGTCCGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga #### Acsl5_ID11599_4 --> 0 - 0 Original Alignment GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTT-GGCATCTTTGCTCAAAATAGGCCAGAG ttatcctctgtttgaataccatgaccacactttccttttttaatctgtagGTGTCCGATCGGGCTGAATACCTTGGTTCCTGCCTTTTGGATAAGGGCTATAAATCCTCTCAGGACCAATTTGTTCGGCA-TTTTGCTCAAAATAGGCCAGAAgtgggtgctctcattaagtaattcccaattcacctgtccttgcagtaatg Alignment from CESAR GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG ttatcctctgtttgaataccatgaccacactttccttttttaatctgtagGTGTCCGATCGGGCTGAATACCTTGGTTCCTGCCTTTTGGATAAGGGCTATAAATCCTCTCAGGACCAATTTGTTCGGCATTTTGCTCAAAATAGGCCAGAAgtgggtgctctcattaagtaattcccaattcacctgtccttgcagtaatg Alignment from Spaln_aa2Genome GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG ttatcctctgtttgaataccatgaccacactttccttttttaatctgtagGTGTCCGATCGGGCTGAATACCTTGGTTCCTGCCTTTTGGATAAGGGCTATAAATCCTCTCAGGACCAATTTGTTCGGCATTTTGCTCAAAATAGGCCAGAAgtgggtgctctcattaagtaattcccaattcacctgtccttgcagtaatg Alignment from Spaln_nt2Genome GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG ttatcctctgtttgaataccatgaccacactttccttttttaatctgtagGTGTCCGATCGGGCTGAATACCTTGGTTCCTGCCTTTTGGATAAGGGCTATAAATCCTCTCAGGACCAATTTGTTCGGCATTTTGCTCAAAATAGGCCAGAAgtgggtgctctcattaagtaattcccaattcacctgtccttgcagtaatg Alignment from Pairagon GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG ttatcctctgtttgaataccatgaccacactttccttttttaatctgtagGTGTCCGATCGGGCTGAATACCTTGGTTCCTGCCTTTTGGATAAGGGCTATAAATCCTCTCAGGACCAATTTGTTCGGCATTTTGCTCAAAATAGGCCAGAAgtgggtgctctcattaagtaattcccaattcacctgtccttgcagtaatg Alignment from Exonerate_protein2genome GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG ttatcctctgtttgaataccatgaccacactttccttttttaatctgtagGTGTCCGATCGGGCTGAATACCTTGGTTCCTGCCTTTTGGATAAGGGCTATAAATCCTCTCAGGACCAATTTGTTCGGCATTTTGCTCAAAATAGGCCAGAAgtgggtgctctcattaagtaattcccaattcacctgtccttgcagtaatg Alignment from Exonerate_coding2genome ttatcctctgtttgaataccatgaccacactttccttttttaatctgtaggtgtccgatcgggctgaataccttggttcctgccttttggataagggctataaatcctctcaggaccaatttgttcggcattttgctcaaaataggccagaagtgggtgctctcattaagtaattcccaattcacctgtccttgcagtaatg Alignment from GeneWise GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG ttatcctctgtttgaataccatgaccacactttccttttttaatctgtagGTGTCCGATCGGGCTGAATACCTTGGTTCCTGCCTTTTGGATAAGGGCTATAAATCCTCTCAGGACCAATTTGTTCGGCATTTTGCTCAAAATAGGCCAGAAgtgggtgctctcattaagtaattcccaattcacctgtccttgcagtaatg #### Acsl5_ID11602_7 --> 0 - 0 Original Alignment AATATAGGCAAAGAG-AACTTCAAAAAACCAGTG cattcaaatgataatgattctttttggttaacttcttgttctccaaccagAATATAGGCAAAGAGCAACT-CAAGAAACCAGTGgcaagtcttatatgtttgctagttatgcgctgcttttcacctctgtaact Alignment from CESAR AATATAGGCAAAGAGAACTTCAAAAAACCAGTG cattcaaatgataatgattctttttggttaacttcttgttctccaaccagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgcaagtcttatatgtttgctagttatgcgctgcttttcacctctgtaact Alignment from Spaln_aa2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG cattcaaatgataatgattctttttggttaacttcttgttctccaaccagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgcaagtcttatatgtttgctagttatgcgctgcttttcacctctgtaact Alignment from Spaln_nt2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG cattcaaatgataatgattctttttggttaacttcttgttctccaaccagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgcaagtcttatatgtttgctagttatgcgctgcttttcacctctgtaact Alignment from Pairagon AATATAGGCAAAGAGAACTTCAAAAAACCAGTG cattcaaatgataatgattctttttggttaacttcttgttctccaaccagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgcaagtcttatatgtttgctagttatgcgctgcttttcacctctgtaact Alignment from Exonerate_protein2genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG cattcaaatgataatgattctttttggttaacttcttgttctccaaccagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgcaagtcttatatgtttgctagttatgcgctgcttttcacctctgtaact Alignment from Exonerate_coding2genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG cattcaaatgataatgattctttttggttaacttcttgttctccaaccagAATATAGGCAAAGAGCAACTCAAGAAACCAGTGgcaagtcttatatgtttgctagttatgcgctgcttttcacctctgtaact Alignment from GeneWise cattcaaatgataatgattctttttggttaacttcttgttctccaaccagaatataggcaaagagcaactcaagaaaccagtggcaagtcttatatgtttgctagttatgcgctgcttttcacctctgtaact #### Acsl5_ID11603_8 --> 0 - 1 Original Alignment CCTCCGAAGCCAGAGGATCTGAGC-GTCATCTGTTTCACCAGTGGAACTACAg tcacctctgtaacttttattgttggcttcacccgctctccatcccaccagCCACCAAAGCCAGAAGATCTTGGCCCTGA-TTGCTTTGCTAGTGGGACTACAagtaagtctctgaaatcccacagtactacagaaaagaccactctccagcta Alignment from CESAR CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAg tcacctctgtaacttttattgttggcttcacccgctctccatcccaccagCCACCAAAGCCAGAAGATCTTGGCCCTGATTGCTTTGCTAGTGGGACTACAagtaagtctctgaaatcccacagtactacagaaaagaccactctccagcta Alignment from Spaln_aa2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttttattgttggcttcacccgctctccatcccaccagCCACCAAAGCCAGAAGATCTTGGCCCTGATTGCTTTGCTAGTGGGACTACAAgtaagtctctgaaatcccacagtactacagaaaagaccactctccagcta Alignment from Spaln_nt2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttttattgttggcttcacccgctctccatcccaccagCCACCAAAGCCAGAAGATCTTGGCCCTGATTGCTTTGCTAGTGGGACTACAAgtaagtctctgaaatcccacagtactacagaaaagaccactctccagcta Alignment from Pairagon CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttttattgttggcttcacccgctctccatcccaccagCCACCAAAGCCAGAAGATCTTGGCCCTGATTGCTTTGCTAGTGGGACTACAAgtaagtctctgaaatcccacagtactacagaaaagaccactctccagcta Alignment from Exonerate_protein2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttttattgttggcttcacccgctctccatcccaccagCCACCAAAGCCAGAAGATCTTGGCCCTGATTGCTTTGCTAGTGGGACTACAAgtaagtctctgaaatcccacagtactacagaaaagaccactctccagcta Alignment from Exonerate_coding2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttttattgttggcttcacccgctctccatcccaccagCCACCAAAGCCAGAAGATCTTGGCCCTGATTGCTTTGCTAGTGGGACTACAAgtaagtctctgaaatcccacagtactacagaaaagaccactctccagcta Alignment from GeneWise CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtaacttttattgttggcttcacccgctctccatcccaccagCCACCAAAGCCAGAAGATCTTGGCCCTGATTGCTTTGCTAGTGGGACTACAAgtaagtctctgaaatcccacagtactacagaaaagaccactctccagcta #### Acsl5_ID11611_16 --> 0 - 0 Original Alignment ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAG-GAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA accaagtagatatatgatatgcaggagatgatgtctctttgccccagcagATCTGCATTAAAAGCAATAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAACAAAGTAATTG-CAAGGACGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCGCAgtaagtagctctcaacagtcagtggagcctacatacagtaatggaggagc Alignment from CESAR ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA accaagtagatatatgatatgcaggagatgatgtctctttgccccagcagATCTGCATTAAAAGCAATAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAACAAAGTAATTGCAAGGACGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCGCAgtaagtagctctcaacagtcagtggagcctacatacagtaatggaggagc Alignment from Spaln_aa2Genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA accaagtagatatatgatatgcaggagatgatgtctctttgccccagcagATCTGCATTAAAAGCAATAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAACAAAGTAATTGCAAGGACGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCGCAgtaagtagctctcaacagtcagtggagcctacatacagtaatggaggagc Alignment from Spaln_nt2Genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA accaagtagatatatgatatgcaggagatgatgtctctttgccccagcagATCTGCATTAAAAGCAATAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAACAAAGTAATTGCAAGGACGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCGCAgtaagtagctctcaacagtcagtggagcctacatacagtaatggaggagc Alignment from Pairagon ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACA-----------GGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA accaagtagatatatgatatgcaggagatgatgtctctttgccccagcagATCTGCATTAAAAGCAATAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAACAAAGTAATTG-----------CAAGGACGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCGCAgtaagtagctctcaacagtcagtggagcctacatacagtaatggaggagc Alignment from Exonerate_protein2genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA accaagtagatatatgatatgcaggagatgatgtctctttgccccagcagATCTGCATTAAAAGCAATAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAACAAAGTAATTGCAAGGACGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCGCAgtaagtagctctcaacagtcagtggagcctacatacagtaatggaggagc Alignment from Exonerate_coding2genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA accaagtagatatatgatatgcaggagatgatgtctctttgccccagcagATCTGCATTAAAAGCAATAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAACAAAGTAATTGCAAGGACGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCGCAgtaagtagctctcaacagtcagtggagcctacatacagtaatggaggagc Alignment from GeneWise ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA accaagtagatatatgatatgcaggagatgatgtctctttgccccagcagATCTGCATTAAAAGCAATAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAACAAAGTAATTGCAAGGACGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCGCAgtaagtagctctcaacagtcagtggagcctacatacagtaatggaggagc #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAG-GGTGGCCTGAAATCCTTTGAGCAG aggcccctagactgcatgccctgcgtattctctggcaatcttggttgcagTTTGTGAAAGAGGCCATTCTGGAGGACTTACAGAAAATAGGGAAAGAGCGGTGGTT-GAAATCCCTTGAACAGgtaagaatgtggtatgttttccctacttgatgcagtaaatcaatcaacag Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcccctagactgcatgccctgcgtattctctggcaatcttggttgcagTTTGTGAAAGAGGCCATTCTGGAGGACTTACAGAAAATAGGGAAAGAGCGGTGGTTGAAATCCCTTGAACAGgtaagaatgtggtatgttttccctacttgatgcagtaaatcaatcaacag Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcccctagactgcatgccctgcgtattctctggcaatcttggttgcagTTTGTGAAAGAGGCCATTCTGGAGGACTTACAGAAAATAGGGAAAGAGCGGTGGTTGAAATCCCTTGAACAGgtaagaatgtggtatgttttccctacttgatgcagtaaatcaatcaacag Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcccctagactgcatgccctgcgtattctctggcaatcttggttgcagTTTGTGAAAGAGGCCATTCTGGAGGACTTACAGAAAATAGGGAAAGAGCGGTGGTTGAAATCCCTTGAACAGgtaagaatgtggtatgttttccctacttgatgcagtaaatcaatcaacag Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcccctagactgcatgccctgcgtattctctggcaatcttggttgcagTTTGTGAAAGAGGCCATTCTGGAGGACTTACAGAAAATAGGGAAAGAGCGGTGGTTGAAATCCCTTGAACAGgtaagaatgtggtatgttttccctacttgatgcagtaaatcaatcaacag Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcccctagactgcatgccctgcgtattctctggcaatcttggttgcagTTTGTGAAAGAGGCCATTCTGGAGGACTTACAGAAAATAGGGAAAGAGCGGTGGTTGAAATCCCTTGAACAGgtaagaatgtggtatgttttccctacttgatgcagtaaatcaatcaacag Alignment from Exonerate_coding2genome aggcccctagactgcatgccctgcgtattctctggcaatcttggttgcagtttgtgaaagaggccattctggaggacttacagaaaatagggaaagagcggtggttgaaatcccttgaacaggtaagaatgtggtatgttttccctacttgatgcagtaaatcaatcaacag Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aggcccctagactgcatgccctgcgtattctctggcaatcttggttgcagTTTGTGAAAGAGGCCATTCTGGAGGACTTACAGAAAATAGGGAAAGAGCGGTGGTTGAAATCCCTTGAACAGgtaagaatgtggtatgttttccctacttgatgcagtaaatcaatcaacag #### Actn3_ID692_18 --> 0 - 0 Original Alignment CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGC-CTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG cacaaccattccacaatagatatgttttcttgtattcttgctgtctccagCAAATCCGTGTGGGCTGGGAGCAACTACTGACCACCATTGCCCACACCATTAATGAAGTGGATAACCAAGTACTCACTAGAGATGCCAAGGGCCCTAAGCCAGG-GCAACTCAACGAATTCCGTGCCTCATTCAATCACTTTGACCGGgtaagtggcttgacaggattatactcctctctggtctctcctagAAGCGG Alignment from CESAR CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG cacaaccattccacaatagatatgttttcttgtattcttgctgtctccagCAAATCCGTGTGGGCTGGGAGCAACTACTGACCACCATTGCCCACACCATTAATGAAGTGGATAACCAAGTACTCACTAGAGATGCCAAGGGCCCTAAGCCAGGGCAACTCAACGAATTCCGTGCCTCATTCAATCACTTTGACCGGgtaagtggcttgacaggattatcatgcctggcttctgttcctagAAGCGG Alignment from Spaln_aa2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG cacaaccattccacaatagatatgttttcttgtattcttgctgtctccagCAAATCCGTGTGGGCTGGGAGCAACTACTGACCACCATTGCCCACACCATTAATGAAGTGGATAACCAAGTACTCACTAGAGATGCCAAGGGCCCTAAGCCAGGGCAACTCAACGAATTCCGTGCCTCATTCAATCACTTTGACCGGgtaagtggcttgacaggattatactcctctctggtctctcctagAAGCGG Alignment from Spaln_nt2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG cacaaccattccacaatagatatgttttcttgtattcttgctgtctccagCAAATCCGTGTGGGCTGGGAGCAACTACTGACCACCATTGCCCACACCATTAATGAAGTGGATAACCAAGTACTCACTAGAGATGCCAAGGGCCCTAAGCCAGGGCAACTCAACGAATTCCGTGCCTCATTCAATCACTTTGACCGGgtaagtggcttgacaggattatactcctctctggtctctcctagAAGCGG Alignment from Pairagon CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGG-CCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG cacaaccattccacaatagatatgttttcttgtattcttgctgtctccagCAAATCCGTGTGGGCTGGGAGCAACTACTGACCACCATTGCCCACACCATTAATGAAGTGGATAACCAAGTACTCACTAGAGATGCCAAGGGCCCTAAGCCAGG-GCAACTCAACGAATTCCGTGCCTCATTCAATCACTTTGACCGGgtaagtggcttgacaggattatactcctctctggtctctcctagAAGCGG Alignment from Exonerate_protein2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG cacaaccattccacaatagatatgttttcttgtattcttgctgtctccagCAAATCCGTGTGGGCTGGGAGCAACTACTGACCACCATTGCCCACACCATTAATGAAGTGGATAACCAAGTACTCACTAGAGATGCCAAGGGCCCTAAGCCAGGGCAACTCAACGAATTCCGTGCCTCATTCAATCACTTTGACCGGgtaagtggcttgacaggattatactcctctctggtctctcctagAAGCGG Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG cacaaccattccacaatagatatgttttcttgtattcttgctgtctccagCAAATCCGTGTGGGCTGGGAGCAACTACTGACCACCATTGCCCACACCATTAATGAAGTGGATAACCAAGTACTCACTAGAGATGCCAAGGGCCCTAAGCCAGGGCAACTCAACGAATTCCGTGCCTCATTCAATCACTTTGACCGGgtaagtggcttgacaggattatactcctctctggtctctcctagAAGCGG #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCA-GCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggccaatggtgagttttgggactctactcttttgcttcactctggacagGAAGTAGGACGACTAGCACGCAGGGC-AGCTGGCTCTCTGGAGGAGCATATGGCAGGTCTGCGTCAGCAGGAACAGAATATCATCAATTACAAAAGTAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtcagtacctaatggccgccagatagtcgtggtttatgtcagctgactca Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggccaatggtgagttttgggactctactcttttgcttcactctggacagGAAGTAGGACGACTAGCACGCAGGGCAGCTGGCTCTCTGGAGGAGCATATGGCAGGTCTGCGTCAGCAGGAACAGAATATCATCAATTACAAAAGTAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtcagtacctaatggccgccagatagtcgtggtttatgtcagctgactca Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggccaatggtgagttttgggactctactcttttgcttcactctggacagGAAGTAGGACGACTAGCACGCAGGGCAGCTGGCTCTCTGGAGGAGCATATGGCAGGTCTGCGTCAGCAGGAACAGAATATCATCAATTACAAAAGTAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtcagtacctaatggccgccagatagtcgtggtttatgtcagctgactca Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggccaatggtgagttttgggactctactcttttgcttcactctggacagGAAGTAGGACGACTAGCACGCAGGGCAGCTGGCTCTCTGGAGGAGCATATGGCAGGTCTGCGTCAGCAGGAACAGAATATCATCAATTACAAAAGTAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtcagtacctaatggccgccagatagtcgtggtttatgtcagctgactca Alignment from Pairagon GAAGTAGGACGGCT---------GGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggccaatggtgagttttgggactctactcttttgcttcactctggacagGAAGTAGGACGACTAGCACGCAGGGCAGCT---------GGCTCTCTGGAGGAGCATATGGCAGGTCTGCGTCAGCAGGAACAGAATATCATCAATTACAAAAGTAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtcagtacctaatggccgccagatagtcgtggtttatgtcagctgactca Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggccaatggtgagttttgggactctactcttttgcttcactctggacagGAAGTAGGACGACTAGCACGCAGGGCAGCTGGCTCTCTGGAGGAGCATATGGCAGGTCTGCGTCAGCAGGAACAGAATATCATCAATTACAAAAGTAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtcagtacctaatggccgccagatagtcgtggtttatgtcagctgactca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gggccaatggtgagttttgggactctactcttttgcttcactctggacagGAAGTAGGACGACTAGCACGCAGGGCAGCTGGCTCTCTGGAGGAGCATATGGCAGGTCTGCGTCAGCAGGAACAGAATATCATCAATTACAAAAGTAACATCGACTGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTTTTTGACAACAAGCACACAGTCTACAGCATGGAGgtcagtacctaatggccgccagatagtcgtggtttatgtcagctgactca #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCC-ATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacccacaggcaaatatggataatgcttttctattgggatttttatagAGCCTACTAACAGCACATGAACAATTCAAAGCTACTTTACCTGAAGCTGATCGAGAGCCAGGCGCTCGTCCCAG-CATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCAAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGATATCAATAATAAGTGGGACACTgtaagttacctctttttgtgttaagtgagagatctattgtagcaatacta Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacccacaggcaaatatggataatgcttttctattgggatttttatagAGCCTACTAACAGCACATGAACAATTCAAAGCTACTTTACCTGAAGCTGATCGAGAGCCAGGCGCTCGTCCCAGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCAAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGATATCAATAATAAGTGGGACACTgtaagttacctctttttgtgttaagtgagagatctattgtagcaatacta Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacccacaggcaaatatggataatgcttttctattgggatttttatagAGCCTACTAACAGCACATGAACAATTCAAAGCTACTTTACCTGAAGCTGATCGAGAGCCAGGCGCTCGTCCCAGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCAAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGATATCAATAATAAGTGGGACACTgtaagttacctctttttgtgttaagtgagagatctattgtagcaatacta Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacccacaggcaaatatggataatgcttttctattgggatttttatagAGCCTACTAACAGCACATGAACAATTCAAAGCTACTTTACCTGAAGCTGATCGAGAGCCAGGCGCTCGTCCCAGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCAAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGATATCAATAATAAGTGGGACACTgtaagttacctctttttgtgttaagtgagagatctattgtagcaatacta Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacccacaggcaaatatggataatgcttttctattgggatttttatagAGCCTACTAACAGCACATGAACAATTCAAAGCTACTTTACCTGAAGCTGATCGAGAGCCAGGCGCTCGTCCCAGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCAAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGATATCAATAATAAGTGGGACACTgtaagttacctctttttgtgttaagtgagagatctattgtagcaatacta Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacccacaggcaaatatggataatgcttttctattgggatttttatagAGCCTACTAACAGCACATGAACAATTCAAAGCTACTTTACCTGAAGCTGATCGAGAGCCAGGCGCTCGTCCCAGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCAAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGATATCAATAATAAGTGGGACACTgtaagttacctctttttgtgttaagtgagagatctattgtagcaatacta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacccacaggcaaatatggataatgcttttctattgggatttttatagAGCCTACTAACAGCACATGAACAATTCAAAGCTACTTTACCTGAAGCTGATCGAGAGCCAGGCGCTCGTCCCAGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCAAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGATATCAATAATAAGTGGGACACTgtaagttacctctttttgtgttaagtgagagatctattgtagcaatacta #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTG-GAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatatttgtcctttgcctggattctgatgacatgtttcactcccgacagAAGATGGAGAAATTCCTGGAGACAATTGACCAGCTTCAGCTACGAACTTG-TCGCAGGGCAGCTTCCTTCAATAATTGGTTTGATGGAGCTGTTAAGGATCTGCATGACGTGTGGCTAGTGGTACACTCTGTGGAAGAA---AAAgtaatgtcaaatgtgcttggggcctgaacagatgacacaatgacttacct Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatatttgtcctttgcctggattctgatgacatgtttcactcccgacagAAGATGGAGAAATTCCTGGAGACAATTGACCAGCTTCAGCTACGAACTTGTCGCAGGGCAGCTTCCTTCAATAATTGGTTTGATGGAGCTGTTAAGGATCTGCATGACGTGTGGCTAGTGGTACACTCTGTGGAAGAA---AAAgtaatgtcaaatgtgcttggggcctgaacagatgacacaatgacttacct Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatatttgtcctttgcctggattctgatgacatgtttcactcccgacagAAGATGGAGAAATTCCTGGAGACAATTGACCAGCTTCAGCTACGAACTTGTCGCAGGGCAGCTTCCTTCAATAATTGGTTTGATGGAGCTGTTAAGGATCTGCATGACGTGTGGCTAGTGGTACACTCTGTGGAAGAA---AAAgtaatgtcaaatgtgcttggggcctgaacagatgacacaatgacttacct Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatatttgtcctttgcctggattctgatgacatgtttcactcccgacagAAGATGGAGAAATTCCTGGAGACAATTGACCAGCTTCAGCTACGAACTTGTCGCAGGGCAGCTTCCTTCAATAATTGGTTTGATGGAGCTGTTAAGGATCTGCATGACGTGTGGCTAGTGGTACACTCTGTGGAAGAAA---AAgtaatgtcaaatgtgcttggggcctgaacagatgacacaatgacttacct Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGC--------TGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGA------------------------------------------------------ taatatttgtcctttgcctggattctgatgacatgtttcactcccgacagAAGATGGAGAAATTCCTGGAGACAATTGACCAGCTTCAGCTACGAACTTG--------TCGCAGGGCAGCTTCCTTCAATAATTGGTTTGATGGAGCTGTTAAGGATCTGCATGACGTGTGGCTAGTGGTACACTCTGTGGAAGAAAAAGTAATGTCAAATGTGCTTGGGGCCTGAACAGATGACACAATGACTTACCT Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACC taatatttgtcctttgcctggattctgatgacatgtttcactcccgacagAAGATGGAGAAATTCCTGGAGACAATTGACCAGCTTCAGCTACGAACTTGTCGCAGGGCAGCTTCCTTCAATAATTGGTTTGATGGAGCTGTTAAGGATCTGCATGACGTGTGGCTAGTGGTACACTCTGTGGAAGAAAAAgtaatgtcaaatgtgcttggggcctgaacagatgacacaatgacttacct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAGAG taatatttgtcctttgcctggattctgatgacatgtttcactcccgacagAAGATGGAGAAATTCCTGGAGACAATTGACCAGCTTCAGCTACGAACTTGTCGCAGGGCAGCTTCCTTCAATAATTGGTTTGATGGAGCTGTTAAGGATCTGCATGACGTGTGGCTAGTGGTACACTCTGTGGAAGAAAAAGTAATgtcaaatgtgcttggggcctgaacagatgacacaatgacttacct #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAA-ACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag atgctggataccaagccaagccatgtcactgtggttctctcctctgtcagagGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAACATAGCTCCAT-CCATAATGTTAATGTACAGAACTTCCATACTaggtaagaatgctgtatatcatagtcaggatctataaaagtgaagggtgtca Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag atgctggataccaagccaagccatgtcactgtggttctctcctctgtcagagGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAACATAGCTCCATCCATAATGTTAATGTACAGAACTTCCATACTaggtaagaatgctgtatatcatagtcaggatctataaaagtgaagggtgtca Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgctggataccaagccaagccatgtcactgtggttctctcctctgtcagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAACATAGCTCCATCCATAATGTTAATGTACAGAACTTCCATACTAGgtaagaatgctgtatatcatagtcaggatctataaaagtgaagggtgtca Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAA-ACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgctggataccaagccaagccatgtcactgtggttctctcctctgtcagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAACATAGCTCCAT-CCATAATGTTAATGTACAGAACTTCCATACTAGgtaagaatgctgtatatcatagtcaggatctataaaagtgaagggtgtca Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGC--------------AATGTCAACGTACAGAACTTCCATACCAG atgctggataccaagccaagccatgtcactgtggttctctcctctgtcagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAA--------------CATAGCTCCATCCATAATGTTAATGTACAGAACTTCCATACTAGgtaagaatgctgtatatcatagtcaggatctataaaagtgaagggtgtca Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgctggataccaagccaagccatgtcactgtggttctctcctctgtcagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAACATAGCTCCATCCATAATGTTAATGTACAGAACTTCCATACTAGgtaagaatgctgtatatcatagtcaggatctataaaagtgaagggtgtca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG atgctggataccaagccaagccatgtcactgtggttctctcctctgtcagAGGCTGCCTCCAAACAGGCCTTGTTCCTCTGGTGCCAATGGAAACATAGCTCCATCCATAATGTTAATGTACAGAACTTCCATACTAGgtaagaatgctgtatatcatagtcaggatctataaaagtgaagggtgtca #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATT-CAGGACATCTCTGTAGAAg cataacaagggggaaaaaataactctcaaaacatccttttccattcccagaaATAGTCGATGGAAACCTGAAGATGACCCTTGGTATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGG-CATCTCTGTAGAAggtgagctgatgctggataccaagccaagccatgtcatgatcttcgtgtct Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg cataacaagggggaaaaaataactctcaaaacatccttttccattcccagaaATAGTCGATGGAAACCTGAAGATGACCCTTGGTATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAggtgagctgatgctggataccaagccaagccatgtcactgtggttctctcc Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG cataacaagggggaaaaaataactctcaaaacatccttttccattcccagAAATAGTCGATGGAAACCTGAAGATGACCCTTGGTATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgagctgatgctggataccaagccaagccatgtcatgatcttcgtgtct Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG cataacaagggggaaaaaataactctcaaaacatccttttccattcccagAAATAGTCGATGGAAACCTGAAGATGACCCTTGGTATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgagctgatgctggataccaagccaagccatgtcatgatcttcgtgtct Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG cataacaagggggaaaaaataactctcaaaacatccttttccattcccagAAATAGTCGATGGAAACCTGAAGATGACCCTTGGTATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgagctgatgctggataccaagccaagccatgtcatgatcttcgtgtct Alignment from Exonerate_protein2genome cataacaagggggaaaaaataactctcaaaacatccttttccattcccagaaatagtcgatggaaacctgaagatgacccttggtatgattgggacaatcatcctccgttttgccattccaggcatctctgtagaaggtgagctgatgctggataccaagccaagccatgtcatgatcttcgtgtct Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG cataacaagggggaaaaaataactctcaaaacatccttttccattcccagAAATAGTCGATGGAAACCTGAAGATGACCCTTGGTATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgagctgatgctggataccaagccaagccatgtcatgatcttcgtgtct Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG cataacaagggggaaaaaataactctcaaaacatccttttccattcccagAAATAGTCGATGGAAACCTGAAGATGACCCTTGGTATGATTGGGACAATCATCCTCCGTTTTGCCATTCCAGGCATCTCTGTAGAAGgtgagctgatgctggataccaagccaagccatgtcatgatcttcgtgtct #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAGGGC-GTGCTGCGG---------GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ctggtagatgcatttttcaagggtagcctatcagctgtcacttttttcaggcCTTGAGATGGGCCCACAGCCCCAAGGGCGTTC-GTGGTCTGATCTATCTGATCTGTTTTCACAGTTACGAGCTATAGTGGCATCAATTCTTGATGTCACTGAGCTATTGAAGCAAggtaagatattcctagtattttatcaaccaggtcatgttgatgggagtgtt Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGAC---------CTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ctggtagatgcatttttcaagggtagcctatcagctgtcacttttttcaggcCTTGAGATGGGCCCACAGCCCCAAGGGCGTTCGTGGTCTGATCTATCTGATCTGTTTTCACAGTTACGAGCTATAGTGGCATCAATTCTTGATGTCACTGAGCTATTGAAGCAAggtaagatattcctagtattttatcaaccaggtcatgttgatgggagtgtt Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG---------GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagatgcatttttcaagggtagcctatcagctgtcacttttttcagGCCTTGAGATGGGCCCACAGCCCCAAGGGCGTTCGTGGTCTGATCTATCTGATCTGTTTTCACAGTTACGAGCTATAGTGGCATCAATTCTTGATGTCACTGAGCTATTGAAGCAAGgtaagatattcctagtattttatcaaccaggtcatgttgatgggagtgtt Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCA-GGGCGTGC------TG--CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagatgcatttttcaagggtagcctatcagctgtcacttttttcagGCCTTGAGATGGGCCCACAGCCCCAAGGGCGTTCGTGGTCTGATCTATCTGATCTGTTTTCACAGTTACGAGCTATAGTGGCATCAATTCTTGATGTCACTGAGCTATTGAAGCAAGgtaagatattcctagtattttatcaaccaggtcatgttgatgggagtgtt Alignment from Pairagon GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCC--------------------------GACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagatgcatttttcaagggtagcctatcagctgtcacttttttcagGCCTTGAGATGGGCCCACAGCC-----------------CCAAGGGCGTTCGTGGTCTGATCTATCTGATCTGTTTTCACAGTTACGAGCTATAGTGGCATCAATTCTTGATGTCACTGAGCTATTGAAGCAAGgtaagatattcctagtattttatcaaccaggtcatgttgatgggagtgtt Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTG---------CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagatgcatttttcaagggtagcctatcagctgtcacttttttcagGCCTTGAGATGGGCCCACAGCCCCAAGGGCGTTCGTGGTCTGATCTATCTGATCTGTTTTCACAGTTACGAGCTATAGTGGCATCAATTCTTGATGTCACTGAGCTATTGAAGCAAGgtaagatattcctagtattttatcaaccaggtcatgttgatgggagtgtt Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTG---------CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagatgcatttttcaagggtagcctatcagctgtcacttttttcagGCCTTGAGATGGGCCCACAGCCCCAAGGGCGTTCGTGGTCTGATCTATCTGATCTGTTTTCACAGTTACGAGCTATAGTGGCATCAATTCTTGATGTCACTGAGCTATTGAAGCAAGgtaagatattcctagtattttatcaaccaggtcatgttgatgggagtgtt Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTG---------CGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ctggtagatgcatttttcaagggtagcctatcagctgtcacttttttcagGCCTTGAGATGGGCCCACAGCCCCAAGGGCGTTCGTGGTCTGATCTATCTGATCTGTTTTCACAGTTACGAGCTATAGTGGCATCAATTCTTGATGTCACTGAGCTATTGAAGCAAGgtaagatattcctagtattttatcaaccaggtcatgttgatgggagtgtt #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATG------GACTTACCCGCCTTTGAGATGGATATCTAC-AGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG ccaggtcatgttgatgggagtgttatctcactttgtattttacatcacaggtATGGATTCAGACTCTGCAACATTTGAGATGGATATTTACCTGGA-CTTGGGTAGTGTAGACTTCTCCTGCACTGCTGATGGTGATCTAGCCAGCATGGTGCATCCACAGATTCAGgtaagcatactactggtaatcaggtgtgtctcatgcagtaatgtcacaac Alignment from CESAR gcATGGACTTA------CCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG ccaggtcatgttgatgggagtgttatctcactttgtattttacatcacaggtATGGATTCAGACTCTGCAACATTTGAGATGGATATTTACCTGGACTTGGGTAGTGTAGACTTCTCCTGCACTGCTGATGGTGATCTAGCCAGCATGGTGCATCCACAGATTCAGgtaagcatactactggtaatcaggtgtgtctcatgcagtaatgtcacaac Alignment from Spaln_aa2Genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG ccaggtcatgttgatgggagtgttatctcactttgtattttacatcacagGTATGGATTCAGACTCTGCAACATTTGAGATGGATATTTACCTGGACTTGGGTAGTGTAGACTTCTCCTGCACTGCTGATGGTGATCTAGCCAGCATGGTGCATCCACAGATTCAGgtaagcatactactggtaatcaggtgtgtctcatgcagtaatgtcacaac Alignment from Spaln_nt2Genome GCATGGACTTACCCGCC------TTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG ccaggtcatgttgatgggagtgttatctcactttgtattttacatcacagGTATGGATTCAGACTCTGCAACATTTGAGATGGATATTTACCTGGACTTGGGTAGTGTAGACTTCTCCTGCACTGCTGATGGTGATCTAGCCAGCATGGTGCATCCACAGATTCAGgtaagcatactactggtaatcaggtgtgtctcatgcagtaatgtcacaac Alignment from Pairagon GCATGGACTTACCCGCC------TTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG ccaggtcatgttgatgggagtgttatctcactttgtattttacatcacagGTATGGATTCAGACTCTGCAACATTTGAGATGGATATTTACCTGGACTTGGGTAGTGTAGACTTCTCCTGCACTGCTGATGGTGATCTAGCCAGCATGGTGCATCCACAGATTCAGgtaagcatactactggtaatcaggtgtgtctcatgcagtaatgtcacaac Alignment from Exonerate_protein2genome GCATGGACTTACCCGCC------TTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG ccaggtcatgttgatgggagtgttatctcactttgtattttacatcacagGTATGGATTCAGACTCTGCAACATTTGAGATGGATATTTACCTGGACTTGGGTAGTGTAGACTTCTCCTGCACTGCTGATGGTGATCTAGCCAGCATGGTGCATCCACAGATTCAGgtaagcatactactggtaatcaggtgtgtctcatgcagtaatgtcacaac Alignment from Exonerate_coding2genome GCATGGACTTACCCGCC------TTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG ccaggtcatgttgatgggagtgttatctcactttgtattttacatcacagGTATGGATTCAGACTCTGCAACATTTGAGATGGATATTTACCTGGACTTGGGTAGTGTAGACTTCTCCTGCACTGCTGATGGTGATCTAGCCAGCATGGTGCATCCACAGATTCAGgtaagcatactactggtaatcaggtgtgtctcatgcagtaatgtcacaac Alignment from GeneWise GCATGGACTTACCCGCC------TTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG ccaggtcatgttgatgggagtgttatctcactttgtattttacatcacagGTATGGATTCAGACTCTGCAACATTTGAGATGGATATTTACCTGGACTTGGGTAGTGTAGACTTCTCCTGCACTGCTGATGGTGATCTAGCCAGCATGGTGCATCCACAGATTCAGgtaagcatactactggtaatcaggtgtgtctcatgcagtaatgtcacaac #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAG-GAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttaattcctgcatctacctatcgtaggctgcaaacccccctcttcctagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTAGCATTGCTGAATGGTGGGAACAGCGAGGTGG-TGAGACTGTTTTT---ACCAGCAATGCTGAAACTGACCATCTTGAGCCACAA------------AACAGACAATTAGGTCAGGGGGAAggtgagcgcatttcacccatattgcaggagtaaatgccagaatgccagcat Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttaattcctgcatctacctatcgtaggctgcaaacccccctcttcctagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTAGCATTGCTGAATGGTGGGAACAGCGAGGTGGTGAGACTGTTTTT---ACCAGCAATGCTGAAACTGACCATCTTGAGCCACAA------------AACAGACAATTAGGTCAGGGGGAAggtgagcgcatttcacccatattgcaggagtaaatgccagaatgccagcat Alignment from Spaln_aa2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctgcatctacctatcgtaggctgcaaacccccctcttcctagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTAGCATTGCTGAATGGTGGGAACAGCGAGGTGGTGAGACTGTTTTT---ACCAGCAATGCTGAAACTGACCATCTTGAG------------CCACAAAACAGACAATTAGGTCAGGGGGAAGgtgagcgcatttcacccatattgcaggagtaaatgccagaatgccagcat Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAG-GAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctgcatctacctatcgtaggctgcaaacccccctcttcctagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTAGCATTGCTGAATGGTGGGAACAGCGAGGTGG-TGAGACTGTTTT---TACCAGCAATGCTGAAACTGACCATCTTGAGCCAC------------AAAACAGACAATTAGGTCAGGGGGAAGgtgagcgcatttcacccatattgcaggagtaaatgccagaatgccagcat Alignment from Pairagon TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAG-GAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctgcatctacctatcgtaggctgcaaacccccctcttcctagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTAGCATTGCTGAATGGTGGGAACAGCGAGGTGGT-GAGACTGTTTT---TACCAGCAATGCTGAAACTGACCATCTTGAGCCAC------------AAAACAGACAATTAGGTCAGGGGGAAGgtgagcgcatttcacccatattgcaggagtaaatgccagaatgccagcat Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctgcatctacctatcgtaggctgcaaacccccctcttcctagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTAGCATTGCTGAATGGTGGGAACAGCGAGGTGGTGAGACTGTTTTT---ACCAGCAATGCTGAAACTGACCATCTTGAG------------CCACAAAACAGACAATTAGGTCAGGGGGAAGgtgagcgcatttcacccatattgcaggagtaaatgccagaatgccagcat Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctgcatctacctatcgtaggctgcaaacccccctcttcctagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTAGCATTGCTGAATGGTGGGAACAGCGAGGTGGTGAGACTGTTTTT---ACCAGCAATGCTGAAACTGACCATCTTGAG------------CCACAAAACAGACAATTAGGTCAGGGGGAAGgtgagcgcatttcacccatattgcaggagtaaatgccagaatgccagcat Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttaattcctgcatctacctatcgtaggctgcaaacccccctcttcctagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTAGCATTGCTGAATGGTGGGAACAGCGAGGTGGTGAGACTGTTTTT---ACCAGCAATGCTGAAACTGACCATCTTGAGCCACAA------------AACAGACAATTAGGTCAGGGGGAAGgtgagcgcatttcacccatattgcaggagtaaatgccagaatgccagcat #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTC-CGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttagcccaccttatatctgaatgctgtctctagcCACAGCCACTTCCCAGCAGC-CAAGACAAAAGATACACATGACATCGACCGCATGACACTTACTATGgtgcggctaatagaatcattgaaaactatgtcaagctgagtcatcgatcc Alignment from CESAR aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttagcccaccttatatctgaatgctgtctctagcCACAGCCACTTCCCAGCAGCCAAGACAAAAGATACACATGACATCGACCGCATGACACTTACTATGgtgcggctaatagaatcattgaaaactatgtcaagctgagtcatcgatcc Alignment from Spaln_aa2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttagcccaccttatatctgaatgctgtctctagCCACAGCCACTTCCCAGCAGCCAAGACAAAAGATACACATGACATCGACCGCATGACACTTACTATGgtgcggctaatagaatcattgaaaactatgtcaagctgagtcatcgatcc Alignment from Spaln_nt2Genome ACACAGCCCCTTCCG-GCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttagcccaccttatatctgaatgctgtctctagCCACAGCCACTTCCCAGCAGC-CAAGACAAAAGATACACATGACATCGACCGCATGACACTTACTATGgtgcggctaatagaatcattgaaaactatgtcaagctgagtcatcgatcc Alignment from Pairagon ACACAGCCCCTTCCGGCAGCA--CAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttagcccaccttatatctgaatgctgtctctagCCACAGCCACTTCC--CAGCAGCCAAGACAAAAGATACACATGACATCGACCGCATGACACTTACTATGgtgcggctaatagaatcattgaaaactatgtcaagctgagtcatcgatcc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttagcccaccttatatctgaatgctgtctctagCCACAGCCACTTCCCAGCAGCCAAGACAAAAGATACACATGACATCGACCGCATGACACTTACTATGgtgcggctaatagaatcattgaaaactatgtcaagctgagtcatcgatcc Alignment from Exonerate_coding2genome ttctgatacacctccttttagcccaccttatatctgaatgctgtctctagccacagccacttcccagcagccaagacaaaagatacacatgacatcgaccgcatgacacttactatggtgcggctaatagaatcattgaaaactatgtcaagctgagtcatcgatcc Alignment from GeneWise ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ttctgatacacctccttttagcccaccttatatctgaatgctgtctctagCCACAGCCACTTCCCAGCAGCCAAGACAAAAGATACACATGACATCGACCGCATGACACTTACTATGgtgcggctaatagaatcattgaaaactatgtcaagctgagtcatcgatcc #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment GTgt gGGCACACACGGGTACATG-GCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtgaggaccttcagattcacttcacaaatcttcttcttaatttcaggGGCACACATGGGTACATACGCTC-CAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAgggtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from CESAR GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtaaggaccttcagattcacttcacaaatcttcttcttaatttcaggGGCACACATGGGTACATACGCTCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAgggtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Spaln_aa2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgaggaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATACGCTCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Spaln_nt2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgaggaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATACGCTCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Pairagon GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgaggaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATACGCTCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Exonerate_protein2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgaggaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATACGCTCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Exonerate_coding2genome GGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG gggtgtgaggaccttcagattcacttcacaaatcttcttcttaatttcaggGGCACACATGGGTACATACGCTCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from GeneWise GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgaggaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATACGCTCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGT-CTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgagctgtgctaccttcctttcctttccttttcaggCATGCTAAGAGATGTCTTGGAAA-CAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATAGGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggttaggtaaccccctctcagttcaccttctataagaca Alignment from CESAR gTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgagctgtgctaccttcctttcctttccttttcaggCATGCTAAGAGATGTCTTGGAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATAGGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggttaggtaaccccctctcagttcaccttctataagaca Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgagctgtgctaccttcctttcctttccttttcagGCATGCTAAGAGATGTCTTGGAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATAGGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggttaggtaaccccctctcagttcaccttctataagaca Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgagctgtgctaccttcctttcctttccttttcagGCATGCTAAGAGATGTCTTGGAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATAGGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggttaggtaaccccctctcagttcaccttctataagaca Alignment from Pairagon GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgagctgtgctaccttcctttcctttccttttcagGCATGCTAAGAGATGTCTTGGAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATAGGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggttaggtaaccccctctcagttcaccttctataagaca Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgagctgtgctaccttcctttcctttccttttcagGCATGCTAAGAGATGTCTTGGAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATAGGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggttaggtaaccccctctcagttcaccttctataagaca Alignment from Exonerate_coding2genome acccaccccatcaattgagctgtgctaccttcctttcctttccttttcaggcatgctaagagatgtcttggaaacaagaaacacattaagatgaaacaaggagagacactggccctgaataggcggattatgctatcacttgtgagcactggtgtgagtcaagtggttaggtaaccccctctcagttcaccttctataagaca Alignment from GeneWise GTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgagctgtgctaccttcctttcctttccttttcagGCATGCTAAGAGATGTCTTGGAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATAGGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggttaggtaaccccctctcagttcaccttctataagaca #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTG-TTCCAGAAGTTCATAGAGag aaaccagggctagccagaatggcgcaccctcacctggcctctccctacagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTGCTTCC-AAAGTTTATAGAGaggtgggctggaggcacttctttgcctctacaaacagcttggtgaaggtctg Alignment from CESAR CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aaaccagggctagccagaatggcgcaccctcacctggcctctccctacagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTGCTTCCAAAGTTTATAGAGaggtgggctggaggcacttctttgcctctacaaacagcttggtgaaggtctg Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggcgcaccctcacctggcctctccctacagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTGCTTCCAAAGTTTATAGAGAGgtgggctggaggcacttctttgcctctacaaacagcttggtgaaggtctg Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggcgcaccctcacctggcctctccctacagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTGCTTCCAAAGTTTATAGAGAGgtgggctggaggcacttctttgcctctacaaacagcttggtgaaggtctg Alignment from Pairagon CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggcgcaccctcacctggcctctccctacagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTGCTTCCAAAGTTTATAGAGAGgtgggctggaggcacttctttgcctctacaaacagcttggtgaaggtctg Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggcgcaccctcacctggcctctccctacagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTGCTTCCAAAGTTTATAGAGAGgtgggctggaggcacttctttgcctctacaaacagcttggtgaaggtctg Alignment from Exonerate_coding2genome aaaccagggctagccagaatggcgcaccctcacctggcctctccctacagccttacattgaggatatttgtcagaaactccgaagggatttgcttccaaagtttatagagaggtgggctggaggcacttctttgcctctacaaacagcttggtgaaggtctg Alignment from GeneWise CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggcgcaccctcacctggcctctccctacagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTGCTTCCAAAGTTTATAGAGAGgtgggctggaggcacttctttgcctctacaaacagcttggtgaaggtctg #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAG-CAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttcttcttgtatattgttctgtatccttccttacagCCCTTCTCCCAAAATGCTGCGGAGCATGTGCAGGCTCACCTTGTGAAGAAGCCAGGTCC-ACCAGATCTGTTTCAAgtgaggttaggatgcttatcacggtgttcataagaggttgtttttctttc Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttcttcttgtatattgttctgtatccttccttacagCCCTTCTCCCAAAATGCTGCGGAGCATGTGCAGGCTCACCTTGTGAAGAAGCCAGGTCCACCAGATCTGTTTCAAgtgaggttaggatgcttatcacggtgttcataagaggttgtttttctttc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttcttcttgtatattgttctgtatccttccttacagCCCTTCTCCCAAAATGCTGCGGAGCATGTGCAGGCTCACCTTGTGAAGAAGCCAGGTCCACCAGATCTGTTTCAAgtgaggttaggatgcttatcacggtgttcataagaggttgtttttctttc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttcttcttgtatattgttctgtatccttccttacagCCCTTCTCCCAAAATGCTGCGGAGCATGTGCAGGCTCACCTTGTGAAGAAGCCAGGTCCACCAGATCTGTTTCAAgtgaggttaggatgcttatcacggtgttcataagaggttgtttttctttc Alignment from Pairagon CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttcttcttgtatattgttctgtatccttccttacagCCCTTCTCCCAAAATGCTGCGGAGCATGTGCAGGCTCACCTTGTGAAGAAGCCAGGTCCACCAGATCTGTTTCAAgtgaggttaggatgcttatcacggtgttcataagaggttgtttttctttc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttcttcttgtatattgttctgtatccttccttacagCCCTTCTCCCAAAATGCTGCGGAGCATGTGCAGGCTCACCTTGTGAAGAAGCCAGGTCCACCAGATCTGTTTCAAgtgaggttaggatgcttatcacggtgttcataagaggttgtttttctttc Alignment from Exonerate_coding2genome acattccattttgcttcttcttgtatattgttctgtatccttccttacagcccttctcccaaaatgctgcggagcatgtgcaggctcaccttgtgaagaagccaggtccaccagatctgtttcaagtgaggttaggatgcttatcacggtgttcataagaggttgtttttctttc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG acattccattttgcttcttcttgtatattgttctgtatccttccttacagCCCTTCTCCCAAAATGCTGCGGAGCATGTGCAGGCTCACCTTGTGAAGAAGCCAGGTCCACCAGATCTGTTTCAAgtgaggttaggatgcttatcacggtgttcataagaggttgtttttctttc #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATG-AAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGCAAAGAGCTAC-TGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGCAAAGAGCTACTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGCAAAGAGCTACTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATG-AAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGCAAAGAGCTACT-GCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATG-AAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGCAAAGAGCTACT-GCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGCAAAGAGCTACTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Exonerate_coding2genome ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagattaaaaaatatgcaaagctggagacagaggaggagtgtgttgtccgcagccgagagatctttgagtcctacattatgcaaagagctactgcatgctcacatgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGCAAAGAGCTACTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAAGCTGCCACCCCCAACCCCCCA-CCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG aatgtaaatttggtacagacaagccagcctttgatacttggaaatttcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTGCACCCA---G-TACACCAGTTAATTCAGCATCTGTACTGAAAAATAGGCCCCTCTCTGTCATGGTTATTGGGAAAGGAAGTGTCTTGCAGAAAGCTAAGgtaccataccttattacaaactctattgagccactaatcctcaaaatgtc Alignment from CESAR CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG aatgtaaatttggtacagacaagccagcctttgatacttggaaatttcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTGCACCC---AGTACACCAGTTAATTCAGCATCTGTACTGAAAAATAGGCCCCTCTCTGTCATGGTTATTGGGAAAGGAAGTGTCTTGCAGAAAGCTAAGgtaccataccttattacaaactctattgagccactaatcctcaaaatgtc Alignment from Spaln_aa2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG aatgtaaatttggtacagacaagccagcctttgatacttggaaatttcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTGCACCC---AGTACACCAGTTAATTCAGCATCTGTACTGAAAAATAGGCCCCTCTCTGTCATGGTTATTGGGAAAGGAAGTGTCTTGCAGAAAGCTAAGgtaccataccttattacaaactctattgagccactaatcctcaaaatgtc Alignment from Spaln_nt2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG aatgtaaatttggtacagacaagccagcctttgatacttggaaatttcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTGCACC---CAGTACACCAGTTAATTCAGCATCTGTACTGAAAAATAGGCCCCTCTCTGTCATGGTTATTGGGAAAGGAAGTGTCTTGCAGAAAGCTAAGgtaccataccttattacaaactctattgagccactaatcctcaaaatgtc Alignment from Pairagon CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG aatgtaaatttggtacagacaagccagcctttgatacttggaaatttcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTGCACC---CAGTACACCAGTTAATTCAGCATCTGTACTGAAAAATAGGCCCCTCTCTGTCATGGTTATTGGGAAAGGAAGTGTCTTGCAGAAAGCTAAGgtaccataccttattacaaactctattgagccactaatcctcaaaatgtc Alignment from Exonerate_protein2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG aatgtaaatttggtacagacaagccagcctttgatacttggaaatttcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTGCACCC---AGTACACCAGTTAATTCAGCATCTGTACTGAAAAATAGGCCCCTCTCTGTCATGGTTATTGGGAAAGGAAGTGTCTTGCAGAAAGCTAAGgtaccataccttattacaaactctattgagccactaatcctcaaaatgtc Alignment from Exonerate_coding2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG aatgtaaatttggtacagacaagccagcctttgatacttggaaatttcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTGCACCC---AGTACACCAGTTAATTCAGCATCTGTACTGAAAAATAGGCCCCTCTCTGTCATGGTTATTGGGAAAGGAAGTGTCTTGCAGAAAGCTAAGgtaccataccttattacaaactctattgagccactaatcctcaaaatgtc Alignment from GeneWise CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG aatgtaaatttggtacagacaagccagcctttgatacttggaaatttcagCCTCAGCCCAAAGCTGCCACTCCTAATCCTGCACCC---AGTACACCAGTTAATTCAGCATCTGTACTGAAAAATAGGCCCCTCTCTGTCATGGTTATTGGGAAAGGAAGTGTCTTGCAGAAAGCTAAGgtaccataccttattacaaactctattgagccactaatcctcaaaatgtc #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTG-AAGGAGAAGCTGAGAGTGACCAGTGCAg tgctcttcaaaccacctggaagtatatctattggtatcctttcccgccagAGGCAGCCAGAAGTTCAAGAGTCTTCAGAGCCTATTGAACCCACACCGTGGAGCACTATTGTAAAGTTGCAT---GATCAACAAAGGATTTACTTCCCTGCTAACTGCCAAGATACAATGGCTTCCACCCCCATTACTGCAAGTGCACCTGCACAAAG-GAAGTTAAGT------GGTGCAggtaagtctgtagttcgcctgtgttgctgagttggtccagaggaggttaat Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tgctcttcaaaccacctggaagtatatctattggtatcctttcccgccagAGGCAGCCAGAAGTTCAAGAGTCTTCAGAGCCTATTGAACCCACACCGTGGAGCACTATTGTAAAGTTGCAT---GATCAACAAAGGATTTACTTCCCTGCTAACTGCCAAGATACAATGGCTTCCACCCCCATTACTGCAAGTGCACCTGCACAAAGGAAGTTA------AGTGGTGCAggtaagtctgtagttcgcctgtgttgctgagttggtccagaggaggttaat Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctcttcaaaccacctggaagtatatctattggtatcctttcccgccagAGGCAGCCAGAAGTTCAAGAGTCTTCAGAGCCTATTGAACCCACACCGTGGAGCACTATTGTAAAGTTGCAT---GATCAACAAAGGATTTACTTCCCTGCTAACTGCCAAGATACAATGGCTTCCACCCCCATTACTGCAAGTGCACCTGCACAAAGGAAGTTA------AGTGGTGCAGgtaagtctgtagttcgcctgtgttgctgagttggtccagaggaggttaat Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctcttcaaaccacctggaagtatatctattggtatcctttcccgccagAGGCAGCCAGAAGTTCAAGAGTCTTCAGAGCCTATTGAACCCACACCGTGGAGCACTATTGTAAAGTTGCA---TGATCAACAAAGGATTTACTTCCCTGCTAACTGCCAAGATACAATGGCTTCCACCCCCATTACTGCAAGTGCACCTGCACAAAGGAAGTTAAGTG------GTGCAGgtaagtctgtagttcgcctgtgttgctgagttggtccagaggaggttaat Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCA----------------GTGCAG tgctcttcaaaccacctggaagtatatctattggtatcctttcccgccagAGGCAGCCAGAAGTTCAAGAGTCTTCAGAGCCTATTGAACCCACACCGTGGAGCACTATTGTAAAGTTGCA---TGATCAACAAAGGATTTACTTCCCTGCTAACTGCCAAGATACAATGGCTTCCACCCCCATTACTGCAAGTGCACCTG----------------------CACAAAGGAAGTTAAGTGGTGCAGgtaagtctgtagttcgcctgtgttgctgagttggtccagaggaggttaat Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctcttcaaaccacctggaagtatatctattggtatcctttcccgccagAGGCAGCCAGAAGTTCAAGAGTCTTCAGAGCCTATTGAACCCACACCGTGGAGCACTATTGTAAAGTTGCAT---GATCAACAAAGGATTTACTTCCCTGCTAACTGCCAAGATACAATGGCTTCCACCCCCATTACTGCAAGTGCACCTGCACAAAGGAAGTTA------AGTGGTGCAGgtaagtctgtagttcgcctgtgttgctgagttggtccagaggaggttaat Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctcttcaaaccacctggaagtatatctattggtatcctttcccgccagAGGCAGCCAGAAGTTCAAGAGTCTTCAGAGCCTATTGAACCCACACCGTGGAGCACTATTGTAAAGTTGCAT---GATCAACAAAGGATTTACTTCCCTGCTAACTGCCAAGATACAATGGCTTCCACCCCCATTACTGCAAGTGCACCTGCACAAAGGAAGTTA------AGTGGTGCAGgtaagtctgtagttcgcctgtgttgctgagttggtccagaggaggttaat Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAGAG tgctcttcaaaccacctggaagtatatctattggtatcctttcccgccagAGGCAGCCAGAAGTTCAAGAGTCTTCAGAGCCTATTGAACCCACACCGTGGAGCACTATTGTAAAGTTGCAT---GATCAACAAAGGATTTACTTCCCTGCTAACTGCCAAGATACAATGGCTTCCACCCCCATTACTGCAAGTGCACCTGCACAAAGGAAGTTAAGTGGTGCAGGTAAGTCTgtagttcgcctgtgttgctgagttggtccagaggaggttaat #### Afap1l2_ID12252_11 --> 2 - 1 Original Alignment tcAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATG-AACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCa gcttagaataaattccaagctctgattcaccctttttgttctggggccagtgAAGAAGCGGTACTCGGCCGGTGTAAAGCTGAGTAACCTTATGCAACC-GGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAAACATCTggtaagccgacctctagtaatccctgaggacctgagcagggccactggttg Alignment from CESAR tcAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCa gcttagaataaattccaagctctgattcaccctttttgttctggggccagtgAAGAAGCGGTACTCGGCCGGTGTAAAGCTGAGTAACCTTATGCAACCGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAAACATCTggtaagccgacctctagtaatccctgaggacctgagcagggccactggttg Alignment from Spaln_aa2Genome TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gcttagaataaattccaagctctgattcaccctttttgttctggggccagTGAAGAAGCGGTACTCGGCCGGTGTAAAGCTGAGTAACCTTATGCAACCGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAAACATCTGgtaagccgacctctagtaatccctgaggacctgagcagggccactggttg Alignment from Spaln_nt2Genome TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gcttagaataaattccaagctctgattcaccctttttgttctggggccagTGAAGAAGCGGTACTCGGCCGGTGTAAAGCTGAGTAACCTTATGCAACCGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAAACATCTGgtaagccgacctctagtaatccctgaggacctgagcagggccactggttg Alignment from Pairagon TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gcttagaataaattccaagctctgattcaccctttttgttctggggccagTGAAGAAGCGGTACTCGGCCGGTGTAAAGCTGAGTAACCTTATGCAACCGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAAACATCTGgtaagccgacctctagtaatccctgaggacctgagcagggccactggttg Alignment from Exonerate_protein2genome TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gcttagaataaattccaagctctgattcaccctttttgttctggggccagTGAAGAAGCGGTACTCGGCCGGTGTAAAGCTGAGTAACCTTATGCAACCGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAAACATCTGgtaagccgacctctagtaatccctgaggacctgagcagggccactggttg Alignment from Exonerate_coding2genome gcttagaataaattccaagctctgattcaccctttttgttctggggccagtgaagaagcggtactcggccggtgtaaagctgagtaaccttatgcaaccgggccggaaaaaatctacatcactagaggccccagagaggtcccttgaaacatctggtaagccgacctctagtaatccctgaggacctgagcagggccactggttg Alignment from GeneWise TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gcttagaataaattccaagctctgattcaccctttttgttctggggccagTGAAGAAGCGGTACTCGGCCGGTGTAAAGCTGAGTAACCTTATGCAACCGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAAACATCTGgtaagccgacctctagtaatccctgaggacctgagcagggccactggttg #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACA-CCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctatcatcactgcagctggggactgacctggttcctttatctgcttacagGAGCAGGCTGGCTCTTCAGACTGGGTCCAGTTAGACCTGCAGATCACACCCATTGC-ACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtaagcgtcattgcccagtactgcccaatacaactcaactcagacttccc Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctatcatcactgcagctggggactgacctggttcctttatctgcttacagGAGCAGGCTGGCTCTTCAGACTGGGTCCAGTTAGACCTGCAGATCACACCCATTGCACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtaagcgtcattgcccagtactgcccaatacaactcaactcagacttccc Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctatcatcactgcagctggggactgacctggttcctttatctgcttacagGAGCAGGCTGGCTCTTCAGACTGGGTCCAGTTAGACCTGCAGATCACACCCATTGCACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtaagcgtcattgcccagtactgcccaatacaactcaactcagacttccc Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctatcatcactgcagctggggactgacctggttcctttatctgcttacagGAGCAGGCTGGCTCTTCAGACTGGGTCCAGTTAGACCTGCAGATCACACCCATTGCACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtaagcgtcattgcccagtactgcccaatacaactcaactcagacttccc Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctatcatcactgcagctggggactgacctggttcctttatctgcttacagGAGCAGGCTGGCTCTTCAGACTGGGTCCAGTTAGACCTGCAGATCACACCCATTGCACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtaagcgtcattgcccagtactgcccaatacaactcaactcagacttccc Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctatcatcactgcagctggggactgacctggttcctttatctgcttacagGAGCAGGCTGGCTCTTCAGACTGGGTCCAGTTAGACCTGCAGATCACACCCATTGCACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtaagcgtcattgcccagtactgcccaatacaactcaactcagacttccc Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctatcatcactgcagctggggactgacctggttcctttatctgcttacagGAGCAGGCTGGCTCTTCAGACTGGGTCCAGTTAGACCTGCAGATCACACCCATTGCACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtaagcgtcattgcccagtactgcccaatacaactcaactcagacttccc Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctatcatcactgcagctggggactgacctggttcctttatctgcttacagGAGCAGGCTGGCTCTTCAGACTGGGTCCAGTTAGACCTGCAGATCACACCCATTGCACCCAATTACTGCCAGTGCAAGCTTGTAGCTCCAGGGTATTATGAAGTACTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtaagcgtcattgcccagtactgcccaatacaactcaactcagacttccc #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTG---GTGCTTATCATTGCACCCTGG-AATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tcctgtttaatttacattgcgaatttaaatctctctcccttcctccacagCTGACAAAGCTTAGCTCCACATTCATCCGAAAAGAGCCCTTTGGTCTAGTTTTCCTGATCATTGCACCTTGGCAACTATC-TGTAAACTTGATGATCATCCCTCAGGTGGGGGCCATTGCTGCAggtatgggaagtattatggccacctacatagaagaatatgccctgagggta Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTG---CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tcctgtttaatttacattgcgaatttaaatctctctcccttcctccacagCTGACAAAGCTTAGCTCCACATTCATCCGAAAAGAGCCCTTTGGTCTAGTTTTCCTGATCATTGCACCTTGGCAACTATCTGTAAACTTGATGATCATCCCTCAGGTGGGGGCCATTGCTGCAggtatgggaagtattatggccacctacatagaagaatatgccctgagggta Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTG---CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcctgtttaatttacattgcgaatttaaatctctctcccttcctccacagCTGACAAAGCTTAGCTCCACATTCATCCGAAAAGAGCCCTTTGGTCTAGTTTTCCTGATCATTGCACCTTGGCAACTATCTGTAAACTTGATGATCATCCCTCAGGTGGGGGCCATTGCTGCAGgtatgggaagtattatggccacctacatagaagaatatgccctgagggta Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTG---CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcctgtttaatttacattgcgaatttaaatctctctcccttcctccacagCTGACAAAGCTTAGCTCCACATTCATCCGAAAAGAGCCCTTTGGTCTAGTTTTCCTGATCATTGCACCTTGGCAACTATCTGTAAACTTGATGATCATCCCTCAGGTGGGGGCCATTGCTGCAGgtatgggaagtattatggccacctacatagaagaatatgccctgagggta Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGG---TGCTTATCATTGCACCCTGG-AATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcctgtttaatttacattgcgaatttaaatctctctcccttcctccacagCTGACAAAGCTTAGCTCCACATTCATCCGAAAAGAGCCCTTTGGTCTAGTTTTCCTGATCATTGCACCTTGGCAACTAT-CTGTAAACTTGATGATCATCCCTCAGGTGGGGGCCATTGCTGCAGgtatgggaagtattatggccacctacatagaagaatatgccctgagggta Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTG---CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcctgtttaatttacattgcgaatttaaatctctctcccttcctccacagCTGACAAAGCTTAGCTCCACATTCATCCGAAAAGAGCCCTTTGGTCTAGTTTTCCTGATCATTGCACCTTGGCAACTATCTGTAAACTTGATGATCATCCCTCAGGTGGGGGCCATTGCTGCAGgtatgggaagtattatggccacctacatagaagaatatgccctgagggta Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTG---CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGGAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAG tcctgtttaatttacattgcgaatttaaatctctctcccttcctccacagCTGACAAAGCTTAGCTCCACATTCATCCGAAAAGAGCCCTTTGGTCTAGTTTTCCTGATCATTGCACCTTGGCAACTATCTGTAAACTTGATGATCATCCCTCAGGTGGGGGCCATTGCTGCAGGTATGGGAAGTATTATG---GCCACCTACATAGAAGAATATGCCCTGAGG Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTG---CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCA- tcctgtttaatttacattgcgaatttaaatctctctcccttcctccacagCTGACAAAGCTTAGCTCCACATTCATCCGAAAAGAGCCCTTTGGTCTAGTTTTCCTGATCATTGCACCTTGGCAACTATCTGTAAACTTGATGATCATCCCTCAGGTGGGGGCCATTGCTGCAGgtatgggaagtattatggccacctacatagaagaatatgccctgagggta #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment GGACCAG AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg TGATCAAgtgagtttgattgtgcaggttcccacatcctttgactcctcagAGTTGTTTTGCTGTGCATGC-GGGAAGTCCTGATGAGACACGGCAACTGCTGGAACACAGATTTGATTATATCTTTTTCATTggtaaatctgggtccaaggcctgccacagagcagcacgtgaggtgcctcta Alignment from CESAR GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg TGATCAAgtaaggttgattgtgcaggttcccacatcctttgactcctcagAGTTGTTTTGCTGTGCATGCGGGAAGTCCTGATGAGACACGGCAACTGCTGGAACACAGATTTGATTATATCTTTTTCATTggtaaatctgggtccaaggcctgccacagagcagcacgtgaggtgcctcta Alignment from Spaln_aa2Genome GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG TGATCAAgtgagtttgattgtgcaggttcccacatcctttgactcctcagAGTTGTTTTGCTGTGCATGCGGGAAGTCCTGATGAGACACGGCAACTGCTGGAACACAGATTTGATTATATCTTTTTCATTGgtaaatctgggtccaaggcctgccacagagcagcacgtgaggtgcctcta Alignment from Spaln_nt2Genome GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG TGATCAAgtgagtttgattgtgcaggttcccacatcctttgactcctcagAGTTGTTTTGCTGTGCATGCGGGAAGTCCTGATGAGACACGGCAACTGCTGGAACACAGATTTGATTATATCTTTTTCATTGgtaaatctgggtccaaggcctgccacagagcagcacgtgaggtgcctcta Alignment from Pairagon GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG TGATCAAgtgagtttgattgtgcaggttcccacatcctttgactcctcagAGTTGTTTTGCTGTGCATGCGGGAAGTCCTGATGAGACACGGCAACTGCTGGAACACAGATTTGATTATATCTTTTTCATTGgtaaatctgggtccaaggcctgccacagagcagcacgtgaggtgcctcta Alignment from Exonerate_protein2genome GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG TGATCAAgtgagtttgattgtgcaggttcccacatcctttgactcctcagAGTTGTTTTGCTGTGCATGCGGGAAGTCCTGATGAGACACGGCAACTGCTGGAACACAGATTTGATTATATCTTTTTCATTGgtaaatctgggtccaaggcctgccacagagcagcacgtgaggtgcctcta Alignment from Exonerate_coding2genome GCTGCTGCCCCAGTATCTGGACCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG tgatcaagtgagtttgattgtgcagGTTCCCACATCCTTTGACTCCTCAGAGTTGTTTTGCTGTGCATGCGGGAAGTCCTGATGAGACACGGCAACTGCTGGAACACAGATTTGATTATATCTTTTTCATTGgtaaatctgggtccaaggcctgccacagagcagcacgtgaggtgcctcta Alignment from GeneWise GGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG TGATCAAgtgagtttgattgtgcaggttcccacatcctttgactcctcagAGTTGTTTTGCTGTGCATGCGGGAAGTCCTGATGAGACACGGCAACTGCTGGAACACAGATTTGATTATATCTTTTTCATTGgtaaatctgggtccaaggcctgccacagagcagcacgtgaggtgcctcta #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTG-AGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagcgCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTACAGAAGCTTGG-TGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagcgCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTACAGAAGCTTGGTGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTACAGAAGCTTGGTGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTG-AGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTACAGAAGCTTGG-TGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTG-AGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTACAGAAGCTTGG-TGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTACAGAAGCTTGGTGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTACAGAAGCTTGGTGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTACAGAAGCTTGGTGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt #### Aldh3b2_ID243_9 --> 0 - 1 Original Alignment GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTA-CCAGCTCTGCCTTTGGGGGGAGTTg ggcaggcctggtcctgtgtatgcctgtagcctctcccttgcaccctgcagGTGGTGAATCAGATGTTGGAGCGTACAAGCAGTGGGGGGTTTGGAGGCAATGAGGGATTCCTATACCTAACACTGCCCTGCAT-GCCTTTGGCTGGGGTTggtaagatcttacatgctattgccattggagagttatgttccctcggtata Alignment from CESAR GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg ggcaggcctggtcctgtgtatgcctgtagcctctcccttgcaccctgcagGTGGTGAATCAGATGTTGGAGCGTACAAGCAGTGGGGGGTTTGGAGGCAATGAGGGATTCCTATACCTAACACTGCCCTGCATGCCTTTGGCTGGGGTTggtaagatcttacatgctattgccattggagagttatgttccctcggtata Alignment from Spaln_aa2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG ggcaggcctggtcctgtgtatgcctgtagcctctcccttgcaccctgcagGTGGTGAATCAGATGTTGGAGCGTACAAGCAGTGGGGGGTTTGGAGGCAATGAGGGATTCCTATACCTAACACTGCCCTGCATGCCTTTGGCTGGGGTTGgtaagatcttacatgctattgccattggagagttatgttccctcggtata Alignment from Spaln_nt2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG ggcaggcctggtcctgtgtatgcctgtagcctctcccttgcaccctgcagGTGGTGAATCAGATGTTGGAGCGTACAAGCAGTGGGGGGTTTGGAGGCAATGAGGGATTCCTATACCTAACACTGCCCTGCATGCCTTTGGCTGGGGTTGgtaagatcttacatgctattgccattggagagttatgttccctcggtata Alignment from Pairagon GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG ggcaggcctggtcctgtgtatgcctgtagcctctcccttgcaccctgcagGTGGTGAATCAGATGTTGGAGCGTACAAGCAGTGGGGGGTTTGGAGGCAATGAGGGATTCCTATACCTAACACTGCCCTGCATGCCTTTGGCTGGGGTTGgtaagatcttacatgctattgccattggagagttatgttccctcggtata Alignment from Exonerate_protein2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG ggcaggcctggtcctgtgtatgcctgtagcctctcccttgcaccctgcagGTGGTGAATCAGATGTTGGAGCGTACAAGCAGTGGGGGGTTTGGAGGCAATGAGGGATTCCTATACCTAACACTGCCCTGCATGCCTTTGGCTGGGGTTGgtaagatcttacatgctattgccattggagagttatgttccctcggtata Alignment from Exonerate_coding2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG ggcaggcctggtcctgtgtatgcctgtagcctctcccttgcaccctgcagGTGGTGAATCAGATGTTGGAGCGTACAAGCAGTGGGGGGTTTGGAGGCAATGAGGGATTCCTATACCTAACACTGCCCTGCATGCCTTTGGCTGGGGTTGgtaagatcttacatgctattgccattggagagttatgttccctcggtata Alignment from GeneWise GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG ggcaggcctggtcctgtgtatgcctgtagcctctcccttgcaccctgcagGTGGTGAATCAGATGTTGGAGCGTACAAGCAGTGGGGGGTTTGGAGGCAATGAGGGATTCCTATACCTAACACTGCCCTGCATGCCTTTGGCTGGGGTTGgtaagatcttacatgctattgccattggagagttatgttccctcggtata #### Ankrd13d_ID469_4 --> 0 - 1 Original Alignment GCCCCTGATTTCTACGTG-GAAATGAAATGGGAGTTCACTAGCTGGg gtgagattcgacatggcttataataggcatttgcttttctggttacacagGCCCCTGACTTCTATGTACGAAATGA-ATGGGAATTCACCAGCTGGggtatgcgagccactgcagtgcagagccttggttactggagtgctgagatg Alignment from CESAR GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGg gtgagattcgacatggcttataataggcatttgcttttctggttacacagGCCCCTGACTTCTATGTACGAAATGAATGGGAATTCACCAGCTGGggtatgcgagccactgcagtgcagagccttggttactggagtgctgagatg Alignment from Spaln_aa2Genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG gtgagattcgacatggcttataataggcatttgcttttctggttacacagGCCCCTGACTTCTATGTACGAAATGAATGGGAATTCACCAGCTGGGgtatgcgagccactgcagtgcagagccttggttactggagtgctgagatg Alignment from Spaln_nt2Genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG gtgagattcgacatggcttataataggcatttgcttttctggttacacagGCCCCTGACTTCTATGTACGAAATGAATGGGAATTCACCAGCTGGGgtatgcgagccactgcagtgcagagccttggttactggagtgctgagatg Alignment from Pairagon GCCCCTGATTTCTACGTG-GAAATGAAATGGGAGTTCACTAGCTGGG gtgagattcgacatggcttataataggcatttgcttttctggttacacagGCCCCTGACTTCTATGTACGAAATG-AATGGGAATTCACCAGCTGGGgtatgcgagccactgcagtgcagagccttggttactggagtgctgagatg Alignment from Exonerate_protein2genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG gtgagattcgacatggcttataataggcatttgcttttctggttacacagGCCCCTGACTTCTATGTACGAAATGAATGGGAATTCACCAGCTGGGgtatgcgagccactgcagtgcagagccttggttactggagtgctgagatg Alignment from Exonerate_coding2genome gtgagattcgacatggcttataataggcatttgcttttctggttacacaggcccctgacttctatgtacgaaatgaatgggaattcaccagctggggtatgcgagccactgcagtgcagagccttggttactggagtgctgagatg Alignment from GeneWise GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG gtgagattcgacatggcttataataggcatttgcttttctggttacacagGCCCCTGACTTCTATGTACGAAATGAATGGGAATTCACCAGCTGGGgtatgcgagccactgcagtgcagagccttggttactggagtgctgagatg #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTG-GAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg cttggatgggtactccatataagaccatccctcttcccctcctgatacagCATGACATTGAGCAGGAGGACCCACAGGGGCAGACCCCTTTACGAACTAG-TGTGACTTTGGGGAATTTAGAGTCTGTACGAGTCCTCCTTAAACATAATGCCAATTTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtgagttattgctctattatacgtgaagggcacctagaggtttaatacta Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg cttggatgggtactccatataagaccatccctcttcccctcctgatacagCATGACATTGAGCAGGAGGACCCACAGGGGCAGACCCCTTTACGAACTAGTGTGACTTTGGGGAATTTAGAGTCTGTACGAGTCCTCCTTAAACATAATGCCAATTTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtgagttattgctctattatacgtgaagggcacctagaggtttaatacta Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG cttggatgggtactccatataagaccatccctcttcccctcctgatacagCATGACATTGAGCAGGAGGACCCACAGGGGCAGACCCCTTTACGAACTAGTGTGACTTTGGGGAATTTAGAGTCTGTACGAGTCCTCCTTAAACATAATGCCAATTTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttattgctctattatacgtgaagggcacctagaggtttaatacta Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG cttggatgggtactccatataagaccatccctcttcccctcctgatacagCATGACATTGAGCAGGAGGACCCACAGGGGCAGACCCCTTTACGAACTAGTGTGACTTTGGGGAATTTAGAGTCTGTACGAGTCCTCCTTAAACATAATGCCAATTTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttattgctctattatacgtgaagggcacctagaggtttaatacta Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGC------------TGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG cttggatgggtactccatataagaccatccctcttcccctcctgatacagCATGACATTGAGCAGGAGGACCCACAGGGGCAGACCC------------CTTTACGAACTAGTGTGACTTTGGGGAATTTAGAGTCTGTACGAGTCCTCCTTAAACATAATGCCAATTTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttattgctctattatacgtgaagggcacctagaggtttaatacta Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG cttggatgggtactccatataagaccatccctcttcccctcctgatacagCATGACATTGAGCAGGAGGACCCACAGGGGCAGACCCCTTTACGAACTAGTGTGACTTTGGGGAATTTAGAGTCTGTACGAGTCCTCCTTAAACATAATGCCAATTTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttattgctctattatacgtgaagggcacctagaggtttaatacta Alignment from Exonerate_coding2genome AAGCACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG cttggatgggtactccatataagaccatccctcttcccctcctgataCAGCATGACATTGAGCAGGAGGACCCACAGGGGCAGACCCCTTTACGAACTAGTGTGACTTTGGGGAATTTAGAGTCTGTACGAGTCCTCCTTAAACATAATGCCAATTTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttattgctctattatacgtgaagggcacctagaggtttaatacta Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG cttggatgggtactccatataagaccatccctcttcccctcctgatacagCATGACATTGAGCAGGAGGACCCACAGGGGCAGACCCCTTTACGAACTAGTGTGACTTTGGGGAATTTAGAGTCTGTACGAGTCCTCCTTAAACATAATGCCAATTTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttattgctctattatacgtgaagggcacctagaggtttaatacta #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCG-GTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAG---GACAGA gatatctatggttgtttgactccacccagccactgttccttccctcacagCTGCTCAGCTCAACACTATATGTGGCACGTCAGGA-TGACCATTATAAGTGCACTGAGCATCTCTTCACCAGCAAGACTGATCTCAATGCAAGGGACAACAGAgtatgtacgagtgttacctggcttgaattaggagcttatagatgattatg Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gatatctatggttgtttgactccacccagccactgttccttccctcacagCTGCTCAGCTCAACACTATATGTGGCACGTCAGGATGACCATTATAAGTGCACTGAGCATCTCTTCACCAGCAAGACTGATCTCAATGCAAGGGACAACAGAgtatgtacgagtgttacctggcttgaattaggagcttatagatgattatg Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gatatctatggttgtttgactccacccagccactgttccttccctcacagCTGCTCAGCTCAACACTATATGTGGCACGTCAGGATGACCATTATAAGTGCACTGAGCATCTCTTCACCAGCAAGACTGATCTCAATGCAAGGGACAACAGAgtatgtacgagtgttacctggcttgaattaggagcttatagatgattatg Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCG-GTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACA---GA gatatctatggttgtttgactccacccagccactgttccttccctcacagCTGCTCAGCTCAACACTATATGTGGCACGTCAGGA-TGACCATTATAAGTGCACTGAGCATCTCTTCACCAGCAAGACTGATCTCAATGCAAGGGACAACAGAgtatgtacgagtgttacctggcttgaattaggagcttatagatgattatg Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCG-GTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGG---ACAGA gatatctatggttgtttgactccacccagccactgttccttccctcacagCTGCTCAGCTCAACACTATATGTGGCACGTCAGGA-TGACCATTATAAGTGCACTGAGCATCTCTTCACCAGCAAGACTGATCTCAATGCAAGGGACAACAGAgtatgtacgagtgttacctggcttgaattaggagcttatagatgattatg Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA gatatctatggttgtttgactccacccagccactgttccttccctcacagCTGCTCAGCTCAACACTATATGTGGCACGTCAGGATGACCATTATAAGTGCACTGAGCATCTCTTCACCAGCAAGACTGATCTCAATGCAAGGGACAACAGAgtatgtacgagtgttacctggcttgaattaggagcttatagatgattatg Alignment from Exonerate_coding2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC gatatctatggttgtttgactccacccagccactgttccttccctcacagCTGCTCAGCTCAACACTATATGTGGCACGTCAGGATGACCATTATAAGTGCACTGAGCATCTCTTCACCAGCAAGACTGATCTCAATGCAAGGGACaacagagtatgtacgagtgttacctggcttgaattaggagcttatagatgattatg Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGAGAA gatatctatggttgtttgactccacccagccactgttccttccctcacagCTGCTCAGCTCAACACTATATGTGGCACGTCAGGATGACCATTATAAGTGCACTGAGCATCTCTTCACCAGCAAGACTGATCTCAATGCAAGGGACAACAGAgtatgtacgagtgttacctggcttgaattaggagcttatagatgattatg #### Arl2_ID1477_2 --> 1 - 2 Original Alignment tGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTC-AATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCgg acccagcccaagggtaatgtaagaactccctctccgatggcctcttgcagtGGCTTAGATAAGGCTACCAAAACAACTATACTCAAGAAGTTTCAATGGAG-GGATGTGGAGACGATCTCTTTAACACTGGGGATCAACATTAAA---TTGGAGCACCGTgggtgagaagggcactgactctgaggttatggtcatgttgagacttgcgtat Alignment from CESAR tGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCgg acccagcccaagggtaatgtaagaactccctctccgatggcctcttgcagtGGCTTAGATAAGGCTACCAAAACAACTATACTCAAGAAGTTTCAATGGAGGGATGTGGAGACGATCTCTTTAACACTGGGGATCAACATTAAA---TTGGAGCACCGTgggtgagaagggcactgactctgaggttatggtcatgttgagagattcggat Alignment from Spaln_aa2Genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG acccagcccaagggtaatgtaagaactccctctccgatggcctcttgcagTGGCTTAGATAAGGCTACCAAAACAACTATACTCAAGAAGTTTCAATGGAGGGATGTGGAGACGATCTCTTTAACACTGGGGATCAACATTAAA---TTGGAGCACCGTGGgtgagaagggcactgactctgaggttatggtcatgttgagacttgcgtat Alignment from Spaln_nt2Genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTT-CAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG acccagcccaagggtaatgtaagaactccctctccgatggcctcttgcagTGGCTTAGATAAGGCTACCAAAACAACTATACTCAAGAAGTTTCAATGGAG-GGATGTGGAGACGATCTCTTTAACACTGGGGATCAACATTAA---ATTGGAGCACCGTGGgtgagaagggcactgactctgaggttatggtcatgttgagacttgcgtat Alignment from Pairagon TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAG-TTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG acccagcccaagggtaatgtaagaactccctctccgatggcctcttgcagTGGCTTAGATAAGGCTACCAAAACAACTATACTCAAGAAGTTTCAATGGAGG-GATGTGGAGACGATCTCTTTAACACTGGGGATCAACATTAAA---TTGGAGCACCGTGGgtgagaagggcactgactctgaggttatggtcatgttgagacttgcgtat Alignment from Exonerate_protein2genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG acccagcccaagggtaatgtaagaactccctctccgatggcctcttgcagTGGCTTAGATAAGGCTACCAAAACAACTATACTCAAGAAGTTTCAATGGAGGGATGTGGAGACGATCTCTTTAACACTGGGGATCAACATTAAA---TTGGAGCACCGTGGgtgagaagggcactgactctgaggttatggtcatgttgagacttgcgtat Alignment from Exonerate_coding2genome acccagcccaagggtaatgtaagaactccctctccgatggcctcttgcagtggcttagataaggctaccaaaacaactatactcaagaagtttcaatggagggatgtggagacgatctctttaacactggggatcaacattaaattggagcaccgtgggtgagaagggcactgactctgaggttatggtcatgttgagacttgcgtat Alignment from GeneWise TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG acccagcccaagggtaatgtaagaactccctctccgatggcctcttgcagTGGCTTAGATAAGGCTACCAAAACAACTATACTCAAGAAGTTTCAATGGAGGGATGTGGAGACGATCTCTTTAACACTGGGGATCAACATTAAA---TTGGAGCACCGTGGgtgagaagggcactgactctgaggttatggtcatgttgagacttgcgtat #### Asah2_ID6669_5 --> 0 - 2 Original Alignment AGCATTGATATAGCTCACACAAATCTTAAACCAGGC-AAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAag aaaacctcttagcatgctgaatgcatgcaatttgtttcattttatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCCAAAA-CTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAaggtatggcattccttatagtattagaggtatatacctcaggttacaaaaca Alignment from CESAR AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAag aaaacctcttagcatgctgaatgcatgcaatttgtttcattttatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCCAAAACTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAaggtatggcattccttatagtattagaggtatatacctcaggttacaaaaca Alignment from Spaln_aa2Genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG aaaacctcttagcatgctgaatgcatgcaatttgtttcattttatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCCAAAACTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtatggcattccttatagtattagaggtatatacctcaggttacaaaaca Alignment from Spaln_nt2Genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG aaaacctcttagcatgctgaatgcatgcaatttgtttcattttatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCCAAAACTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGCGCA---TCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtatggcattccttatagtattagaggtatatacctcaggttacaaaaca Alignment from Pairagon AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG aaaacctcttagcatgctgaatgcatgcaatttgtttcattttatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCCAAAACTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGCG---CATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtatggcattccttatagtattagaggtatatacctcaggttacaaaaca Alignment from Exonerate_protein2genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG aaaacctcttagcatgctgaatgcatgcaatttgtttcattttatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCCAAAACTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtatggcattccttatagtattagaggtatatacctcaggttacaaaaca Alignment from Exonerate_coding2genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG aaaacctcttagcatgctgaatgcatgcaatttgtttcattttatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCCAAAACTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtatggcattccttatagtattagaggtatatacctcaggttacaaaaca Alignment from GeneWise AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG aaaacctcttagcatgctgaatgcatgcaatttgtttcattttatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCCAAAACTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtatggcattccttatagtattagaggtatatacctcaggttacaaaaca #### BC048609_ID1423_2 --> 0 - 1 Original Alignment TTCTCCCAGGTGATCAGCATCGGCTGG-GCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tgcaatgattgtgcacccatctggtatcagtttttgcttattctctgcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACCATAG-ACCACTGTACCATGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCTTGagtaagagggggcaggagcatgaagggtgggctaactacgacatcagttct Alignment from CESAR TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tgcaatgattgtgcacccatctggtatcagtttttgcttattctctgcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACCATAGACCACTGTACCATGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCTTGagtaagagggggcaggagcatgaagggtgggctaactacgacatcagttct Alignment from Spaln_aa2Genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatctggtatcagtttttgcttattctctgcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACCATAGACCACTGTACCATGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCTTGAgtaagagggggcaggagcatgaagggtgggctaactacgacatcagttct Alignment from Spaln_nt2Genome TTCTCCCAGGTGATCAGCATCGGCTGG-GCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatctggtatcagtttttgcttattctctgcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACCAT-AGACCACTGTACCATGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCTTGAgtaagagggggcaggagcatgaagggtgggctaactacgacatcagttct Alignment from Pairagon TTCTCCCAGGTGATCAGCATCGGCTGG-GCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatctggtatcagtttttgcttattctctgcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACCAT-AGACCACTGTACCATGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCTTGAgtaagagggggcaggagcatgaagggtgggctaactacgacatcagttct Alignment from Exonerate_protein2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatctggtatcagtttttgcttattctctgcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACCATAGACCACTGTACCATGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCTTGAgtaagagggggcaggagcatgaagggtgggctaactacgacatcagttct Alignment from Exonerate_coding2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatctggtatcagtttttgcttattctctgcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACCATAGACCACTGTACCATGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCTTGAgtaagagggggcaggagcatgaagggtgggctaactacgacatcagttct Alignment from GeneWise TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgcaatgattgtgcacccatctggtatcagtttttgcttattctctgcagTTCTCTCAAGTAATCAGTATTGGTTGGCGCTACCATAGACCACTGTACCATGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCTTGAgtaagagggggcaggagcatgaagggtgggctaactacgacatcagttct #### Bbs1_ID729_5 --> 0 - 2 Original Alignment GACCAGATTGACCCCTTAACCCTG-AAGGAGATGCTGGAGGACATCag aagctttagggtgctactactgtctgcatgtgttctttcccttctcccagGATCAT---GATCCATTGACCTTGCAAAG-TATGTTGGAACATATCaggtatttgttcaattttttcatggtggcgcctcaatattccttactctgcc Alignment from CESAR GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCag aagctttagggtgctactactgtctgcatgtgttctttcccttctcccagGATCAT---GATCCATTGACCTTGCAAAGTATGTTGGAACATATCaggtatttgttcaattttttcatggtggcgcctcaatattccttgactcttg Alignment from Spaln_aa2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG aagctttagggtgctactactgtctgcatgtgttctttcccttctcccagGATCAT---GATCCATTGACCTTGCAAAGTATGTTGGAACATATCAGgtatttgttcaattttttcatggtggcgcctcaatattccttactctgcc Alignment from Spaln_nt2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG aagctttagggtgctactactgtctgcatgtgttctttcccttctcccagGATCA---TGATCCATTGACCTTGCAAAGTATGTTGGAACATATCAGgtatttgttcaattttttcatggtggcgcctcaatattccttactctgcc Alignment from Pairagon aagctttagggtgctactactgtctgcatgtgttctttcccttctcccaggatcatgatccattgaccttgcaaagtatgttggaacatatcaggtatttgttcaattttttcatggtggcgcctcaatattccttactctgcc Alignment from Exonerate_protein2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG aagctttagggtgctactactgtctgcatgtgttctttcccttctcccagGATCAT---GATCCATTGACCTTGCAAAGTATGTTGGAACATATCAGgtatttgttcaattttttcatggtggcgcctcaatattccttactctgcc Alignment from Exonerate_coding2genome aagctttagggtgctactactgtctgcatgtgttctttcccttctcccaggatcatgatccattgaccttgcaaagtatgttggaacatatcaggtatttgttcaattttttcatggtggcgcctcaatattccttactctgcc Alignment from GeneWise GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAGGGAAAA aagctttagggtgctactactgtctgcatgtgttctttcccttctcccagGATCAT---GATCCATTGACCTTGCAAAGTATGTTGGAACATATCAGGTATTTgttcaattttttcatggtggcgcctcaatattccttactctgcc #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACC-TTC---TCCTCCTGCCTGt atgccttttaacccgtctccccttctgtccggaagtcttcatctttcaaggAACGAGGTAAACTCCAAGTGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTCTTCT-ATCTTCTTGTCTGtgtaagtcctgacaccatacttgcagcccaggacataaccagactaatttc Alignment from CESAR cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTC---TCCTCCTGCCTGt atgccttttaacccgtctccccttctgtccggaagtcttcatctttcaaggAACGAGGTAAACTCCAAGTGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTCTTCTATCTTCTTGTCTGtgtaagtcctgacaccatacttgcagcccaggacataaccagactagttta Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACC---TTCTCCTCCTGCCTGT atgccttttaacccgtctccccttctgtccggaagtcttcatctttcaagGAACGAGGTAAACTCCAAGTGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTCTTCTATCTTCTTGTCTGTgtaagtcctgacaccatacttgcagcccaggacataaccagactaatttc Alignment from Spaln_nt2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACAC-CTTCT--CCTCCTGCCTGT atgccttttaacccgtctccccttctgtccggaagtcttcatctttcaagGAACGAGGTAAACTCCAAGTGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTCTTCTATCTTCTTGTCTGTgtaagtcctgacaccatacttgcagcccaggacataaccagactaatttc Alignment from Pairagon CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACAC-CTTCT--CCTCCTGCCTGT atgccttttaacccgtctccccttctgtccggaagtcttcatctttcaagGAACGAGGTAAACTCCAAGTGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTCTTCTATCTTCTTGTCTGTgtaagtcctgacaccatacttgcagcccaggacataaccagactaatttc Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACC---TTCTCCTCCTGCCTGT atgccttttaacccgtctccccttctgtccggaagtcttcatctttcaagGAACGAGGTAAACTCCAAGTGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTCTTCTATCTTCTTGTCTGTgtaagtcctgacaccatacttgcagcccaggacataaccagactaatttc Alignment from Exonerate_coding2genome atgccttttaacccgtctccccttctgtccggaagtcttcatctttcaaggaacgaggtaaactccaagtggctggatgcacactatgaccctatggctaacaaccatactcttctatcttcttgtctgtgtaagtcctgacaccatacttgcagcccaggacataaccagactaatttc Alignment from GeneWise GCTGCGGCGTCTTCATCGGATTCTGACAGCGGGCGAGCTGAGAGCAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTC---TCCTCCTGCCTGT tttaac------CCGTCTCCCCTTCTGTCCGGAAGTCTTCATCTTTCAAGGAACGAGGTAAACTCCAAGTGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTCTTCTATCTTCTTGTCTGTgtaagtcctgacaccatacttgcagcccaggacataaccagactaatttc #### Bscl2_ID2424_7 --> 1 - 0 Original Alignment gTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGG-GGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctagcagccatatatttaattccttaattgaatttgcaggTACCTGCTTTACAATTTTCCTATGACTTGTGCCTTTGTGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTACTTTTCAGTTATATGCAGTGGGCATGGCGGTGCTGTCT-GCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgagccattttctcccaccagacaaacgaacctatactg Alignment from CESAR gTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctagcagccatatatttaattccttaattgaatttgcaggTACCTGCTTTACAATTTTCCTATGACTTGTGCCTTTGTGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTACTTTTCAGTTATATGCAGTGGGCATGGCGGTGCTGTCTGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgagccattttctcccaccagacaaacgaacctatactg Alignment from Spaln_aa2Genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctagcagccatatatttaattccttaattgaatttgcagGTACCTGCTTTACAATTTTCCTATGACTTGTGCCTTTGTGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTACTTTTCAGTTATATGCAGTGGGCATGGCGGTGCTGTCTGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgagccattttctcccaccagacaaacgaacctatactg Alignment from Spaln_nt2Genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGG-GGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctagcagccatatatttaattccttaattgaatttgcagGTACCTGCTTTACAATTTTCCTATGACTTGTGCCTTTGTGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTACTTTTCAGTTATATGCAGTGGGCATGGCGGTGCTGTCT-GCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgagccattttctcccaccagacaaacgaacctatactg Alignment from Pairagon GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGG-GGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctagcagccatatatttaattccttaattgaatttgcagGTACCTGCTTTACAATTTTCCTATGACTTGTGCCTTTGTGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTACTTTTCAGTTATATGCAGTGGGCATGGCGGTGCTGTCT-GCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgagccattttctcccaccagacaaacgaacctatactg Alignment from Exonerate_protein2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctagcagccatatatttaattccttaattgaatttgcagGTACCTGCTTTACAATTTTCCTATGACTTGTGCCTTTGTGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTACTTTTCAGTTATATGCAGTGGGCATGGCGGTGCTGTCTGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgagccattttctcccaccagacaaacgaacctatactg Alignment from Exonerate_coding2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG ccaacttaactctagcagccatatatttaattccttaattgaatttgcagGTACCTGCTTTACAATTTTCCTATGACTTGTGCCTTTGTGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTACTTTTCAGTTATATGCAGTGGGCATGGCGGTGCTGTCTGCCTCATCACCACTCCTCCTTGCAGgtaagtgttcttgagccattttctcccaccagacaaacgaacctatactg Alignment from GeneWise GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGGTTA ccaacttaactctagcagccatatatttaattccttaattgaatttgcagGTACCTGCTTTACAATTTTCCTATGACTTGTGCCTTTGTGGGTGTAGCAAGCAACTTCACATTTCTCAGTGTCATTGTACTTTTCAGTTATATGCAGTGGGCATGGCGGTGCTGTCTGCCTCATCACCACTCCTCCTTGCAGGTAAgtgttcttgagccattttctcccaccagacaaacgaacctatactg #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAA-AGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ccagtagaggatcacaactcattggttgcatgttctctgcctccctgcagGTTAATACATGTCAACAGGGACA-CTCACAG------------GACCATATTTCACACCACCAACCAggtaccagaattaggcattaggaacttggaaatagaccagggattcctcca Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ccagtagaggatcacaactcattggttgcatgttctctgcctccctgcagGTTAATACATGTCAACAGGGACACTCACAGGAC------------CATATTTCACACCACCAACCAggtaccagaattaggcattaggaacttggaaatagaccagggattcctcca Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtagaggatcacaactcattggttgcatgttctctgcctccctgcagGTTAATACATGTCAACAGGGACACTCACAGGAC------------CATATTTCACACCACCAACCAGgtaccagaattaggcattaggaacttggaaatagaccagggattcctcca Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtagaggatcacaactcattggttgcatgttctctgcctccctgcagGTTAATACATGTCAACAGGGACACTCACAGGAC------------CATATTTCACACCACCAACCAGgtaccagaattaggcattaggaacttggaaatagaccagggattcctcca Alignment from Pairagon ccagtagaggatcacaactcattggttgcatgttctctgcctccctgcaggttaatacatgtcaacagggacactcacaggaccatatttcacaccaccaaccaggtaccagaattaggcattaggaacttggaaatagaccagggattcctcca Alignment from Exonerate_protein2genome ccagtagaggatcacaactcattggttgcatgttctctgcctccctgcaggttaatacatgtcaacagggacactcacaggaccatatttcacaccaccaaccaggtaccagaattaggcattaggaacttggaaatagaccagggattcctcca Alignment from Exonerate_coding2genome ccagtagaggatcacaactcattggttgcatgttctctgcctccctgcaggttaatacatgtcaacagggacactcacaggaccatatttcacaccaccaaccaggtaccagaattaggcattaggaacttggaaatagaccagggattcctcca Alignment from GeneWise CAG CCAgtagaggatcacaactcattggttgcatgttctctgcctccctgcaggttaatacatgtcaacagggacactcacaggaccatatttcacaccaccaaccaggtaccagaattaggcattaggaacttggaaatagaccagggattcctcca #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAG-GAGCAAGAGCCAGAGGCTAGTGATg acataattttctaatactcccatgcccattaatgaacctcttcccctcagagGGTGAA---CCAGAAGAGATGAAAGCAAAGAAATGGCCGCTGAACAAGGAGGATCGAGCGGG-ACCAGATGCTGGTGCTggtaggaactgcttggggggttgcgcttaacatagcaggaactatagccgg Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg acataattttctaatactcccatgcccattaatgaacctcttcccctcagagGGTGAA---CCAGAAGAGATGAAAGCAAAGAAATGGCCGCTGAACAAGGAGGATCGAGCGGGACCAGATGCTGGTGCTggtaggaactgcttggggggttgcgcttaacatagcaggaactatagccgg Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG acataattttctaatactcccatgcccattaatgaacctcttcccctcagAGGGTGAA---CCAGAAGAGATGAAAGCAAAGAAATGGCCGCTGAACAAGGAGGATCGAGCGGGACCAGATGCTGGTGCTGgtaggaactgcttggggggttgcgcttaacatagcaggaactatagccgg Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAG-GAGCAAGAGCCAGAGGCTAGTGATG acataattttctaatactcccatgcccattaatgaacctcttcccctcagAGGGTGAAC---CAGAAGAGATGAAAGCAAAGAAATGGCCGCTGAACAAGGAGGATCGAGCGGGA-CCAGATGCTGGTGCTGgtaggaactgcttggggggttgcgcttaacatagcaggaactatagccgg Alignment from Pairagon acataattttctaatactcccatgcccattaatgaacctcttcccctcagagggtgaaccagaagagatgaaagcaaagaaatggccgctgaacaaggaggatcgagcgggaccagatgctggtgctggtaggaactgcttggggggttgcgcttaacatagcaggaactatagccgg Alignment from Exonerate_protein2genome acataattttctaatactcccatgcccattaatgaacctcttcccctcagagggtgaaccagaagagatgaaagcaaagaaatggccgctgaacaaggaggatcgagcgggaccagatgctggtgctggtaggaactgcttggggggttgcgcttaacatagcaggaactatagccgg Alignment from Exonerate_coding2genome acataattttctaatactcccatgcccattaatgaacctcttcccctcagagggtgaaccagaagagatgaaagcaaagaaatggccgctgaacaaggaggatcgagcgggaccagatgctggtgctggtaggaactgcttggggggttgcgcttaacatagcaggaactatagccgg Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG acataattttctaatactcccatgcccattaatgaacctcttcccctcagAGGGTGAA---CCAGAAGAGATGAAAGCAAAGAAATGGCCGCTGAACAAGGAGGATCGAGCGGGACCAGATGCTGGTGCTGgtaggaactgcttggggggttgcgcttaacatagcaggaactatagccgg #### Btaf1_ID7255_34 --> 0 - 0 Original Alignment GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCT-CAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acctgagctacagatccatttggtaatactgtggtttgtcctctttgcag---GTACAGTATCTGCATAAACTATGCAATCATCCGTCGCTAGTTTTGACATCTCAAGCATC-AGAGTTCAAAAGCACCACTGAAAAGTTAAGAGTCCAAAACTCTTATCTTCATGACATCCAGCATGCACCAAAGCTCTCAGCCCTGAAGCAGgtgtttaatttcagttgagcctaatctactgatcctatcttgctagcatt Alignment from CESAR GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acctgagctacagatccatttggtaatactgtggtttgtcctctttgcag---GTACAGTATCTGCATAAACTATGCAATCATCCGTCGCTAGTTTTGACATCTCAAGCATCAGAGTTCAAAAGCACCACTGAAAAGTTAAGAGTCCAAAACTCTTATCTTCATGACATCCAGCATGCACCAAAGCTCTCAGCCCTGAAGCAGgtgtttaatttcagttgagcctaatctactgatcctatcttgctagcatt Alignment from Spaln_aa2Genome GGCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACA acctgagctacagatccatttggtaatactgtggtttgtcctctttgcag---GTACAGTATCTGCATAAACTATGCAATCATCCGTCGCTAGTTTTGACATCTCAAGCATCAGAGTTCAAAAGCACCACTGAAAAGTTAAGAGTCCAAAACTCTTATCTTCATGACATCCAGCATGCACCAAAGCTCTCAGCCCTGAAGCAGgtgtttaatttcagttgagcctaatctactgatcctatcttgctagcatt Alignment from Spaln_nt2Genome TTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCA-GCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acctgagctacagatccatttggtaatactgtggtttgtcctctttgcagGTACAGTATCTGCATAAACTATGCAATCATCCGTCGCTAGTTTTGACATCTCAAGCAT-CAGAGTTCAAAAGCACCACTGAAAAGTTAAGAGTCCAAAACTCTTATCTTCATGACATCCAGCATGCACCAAAGCTCTCAGCCCTGAAGCAGgtgtttaatttcagttgagcctaatctactgatcctatcttgctagcatt Alignment from Pairagon GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acctgagctacagatccatttggtaatactgtggtttgtcctctttgcagG---TACAGTATCTGCATAAACTATGCAATCATCCGTCGCTAGTTTTGACATCTCAAGCATCAGAGTTCAAAAGCACCACTGAAAAGTTAAGAGTCCAAAACTCTTATCTTCATGACATCCAGCATGCACCAAAGCTCTCAGCCCTGAAGCAGgtgtttaatttcagttgagcctaatctactgatcctatcttgctagcatt Alignment from Exonerate_protein2genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acctgagctacagatccatttggtaatactgtggtttgtcctctttgCAGGTACAGTATCTGCATAAACTATGCAATCATCCGTCGCTAGTTTTGACATCTCAAGCATCAGAGTTCAAAAGCACCACTGAAAAGTTAAGAGTCCAAAACTCTTATCTTCATGACATCCAGCATGCACCAAAGCTCTCAGCCCTGAAGCAGgtgtttaatttcagttgagcctaatctactgatcctatcttgctagcatt Alignment from Exonerate_coding2genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acctgagctacagatccatttggtaatactgtggtttgtcctctttgCAGGTACAGTATCTGCATAAACTATGCAATCATCCGTCGCTAGTTTTGACATCTCAAGCATCAGAGTTCAAAAGCACCACTGAAAAGTTAAGAGTCCAAAACTCTTATCTTCATGACATCCAGCATGCACCAAAGCTCTCAGCCCTGAAGCAGgtgtttaatttcagttgagcctaatctactgatcctatcttgctagcatt Alignment from GeneWise GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acctgagctacagatccatttggtaatactgtggtttgtcctctttgcagGTA---CAGTATCTGCATAAACTATGCAATCATCCGTCGCTAGTTTTGACATCTCAAGCATCAGAGTTCAAAAGCACCACTGAAAAGTTAAGAGTCCAAAACTCTTATCTTCATGACATCCAGCATGCACCAAAGCTCTCAGCCCTGAAGCAGgtgtttaatttcagttgagcctaatctactgatcctatcttgctagcatt #### Btaf1_ID7258_37 --> 0 - 0 Original Alignment AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAAC-TCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG gttaggccccttgagtctgacaagaccatgggtggggactctctctgcagAAACGTGTAGTCAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACCTCTA-CTTACAGAGCATGGGCACTGATCAACTCCTTGACCTGTTTACCCTGGATAAGgtaagtatataatgagtgatactaccacacattaacttactgcaatgatc Alignment from CESAR AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG gttaggccccttgagtctgacaagaccatgggtggggactctctctgcagAAACGTGTAGTCAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACCTCTACTTACAGAGCATGGGCACTGATCAACTCCTTGACCTGTTTACCCTGGATAAGgtaagtatataatgagtgatactaccacacattaacttactgcaatgatc Alignment from Spaln_aa2Genome GAAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAA gttaggccccttgagtctgacaagaccatgggtggggactctctctgcagAAACGTGTAGTCAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACCTCTACTTACAGAGCATGGGCACTGATCAACTCCTTGACCTGTTTACCCTGGATAAGgtaagtatataatgagtgatactaccacacattaacttactgcaatgatc Alignment from Spaln_nt2Genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG gttaggccccttgagtctgacaagaccatgggtggggactctctctgcagAAACGTGTAGTCAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACCTCTACTTACAGAGCATGGGCACTGATCAACTCCTTGACCTGTTTACCCTGGATAAGgtaagtatataatgagtgatactaccacacattaacttactgcaatgatc Alignment from Pairagon AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG gttaggccccttgagtctgacaagaccatgggtggggactctctctgcagAAACGTGTAGTCAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACCTCTACTTACAGAGCATGGGCACTGATCAACTCCTTGACCTGTTTACCCTGGATAAGgtaagtatataatgagtgatactaccacacattaacttactgcaatgatc Alignment from Exonerate_protein2genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG gttaggccccttgagtctgacaagaccatgggtggggactctctctgcagAAACGTGTAGTCAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACCTCTACTTACAGAGCATGGGCACTGATCAACTCCTTGACCTGTTTACCCTGGATAAGgtaagtatataatgagtgatactaccacacattaacttactgcaatgatc Alignment from Exonerate_coding2genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG gttaggccccttgagtctgacaagaccatgggtggggactctctctgcagAAACGTGTAGTCAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACCTCTACTTACAGAGCATGGGCACTGATCAACTCCTTGACCTGTTTACCCTGGATAAGgtaagtatataatgagtgatactaccacacattaacttactgcaatgatc Alignment from GeneWise AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG gttaggccccttgagtctgacaagaccatgggtggggactctctctgcagAAACGTGTAGTCAATGTCTACCGATTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACCTCTACTTACAGAGCATGGGCACTGATCAACTCCTTGACCTGTTTACCCTGGATAAGgtaagtatataatgagtgatactaccacacattaacttactgcaatgatc #### C030046E11Rik_ID6307_21 --> 0 - 2 Original Alignment GAGCCCAGTTCAAGTGGTGGGTTT-GAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag atggagcatgtcttgcactcattgcatgcctccgtccctgctgttcttagGAGCCAAGCTCCAGTGGTGGTTTTCGAGTTTT-CCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTTGGATTACAAAAAACATTAAGTATACCAACTGGTCCATCTGGGAAGcggtaagggaccaaatttaagcagcaatatcaaatatcaattgtctgggaga Alignment from CESAR GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag atggagcatgtcttgcactcattgcatgcctccgtccctgctgttcttagGAGCCAAGCTCCAGTGGTGGTTTTCGAGTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTTGGATTACAAAAAACATTAAGTATACCAACTGGTCCATCTGGGAAGcggtaagggaccaaatttaagcagcaatatcaaatatcaattgtctgggaga Alignment from Spaln_aa2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG atggagcatgtcttgcactcattgcatgcctccgtccctgctgttcttagGAGCCAAGCTCCAGTGGTGGTTTTCGAGTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTTGGATTACAAAAAACATTAAGTATACCAACTGGTCCATCTGGGAAGCGgtaagggaccaaatttaagcagcaatatcaaatatcaattgtctgggaga Alignment from Spaln_nt2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG atggagcatgtcttgcactcattgcatgcctccgtccctgctgttcttagGAGCCAAGCTCCAGTGGTGGTTTTCGAGTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTTGGATTACAAAAAACATTAAGTATACCAACTGGTCCATCTGGGAAGCGgtaagggaccaaatttaagcagcaatatcaaatatcaattgtctgggaga Alignment from Pairagon GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG atggagcatgtcttgcactcattgcatgcctccgtccctgctgttcttagGAGCCAAGCTCCAGTGGTGGTTTTCGAGTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTTGGATTACAAAAAACATTAAGTATACCAACTGGTCCATCTGGGAAGCGgtaagggaccaaatttaagcagcaatatcaaatatcaattgtctgggaga Alignment from Exonerate_protein2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG atggagcatgtcttgcactcattgcatgcctccgtccctgctgttcttagGAGCCAAGCTCCAGTGGTGGTTTTCGAGTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTTGGATTACAAAAAACATTAAGTATACCAACTGGTCCATCTGGGAAGCGgtaagggaccaaatttaagcagcaatatcaaatatcaattgtctgggaga Alignment from Exonerate_coding2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG atggagcatgtcttgcactcattgcatgcctccgtccctgctgttcttagGAGCCAAGCTCCAGTGGTGGTTTTCGAGTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTTGGATTACAAAAAACATTAAGTATACCAACTGGTCCATCTGGGAAGCGgtaagggaccaaatttaagcagcaatatcaaatatcaattgtctgggaga Alignment from GeneWise GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG atggagcatgtcttgcactcattgcatgcctccgtccctgctgttcttagGAGCCAAGCTCCAGTGGTGGTTTTCGAGTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTTGGATTACAAAAAACATTAAGTATACCAACTGGTCCATCTGGGAAGCGgtaagggaccaaatttaagcagcaatatcaaatatcaattgtctgggaga #### Cabp2_ID287_2 --> 0 - 0 Original Alignment GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCC-AGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCACAGAA-TGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCT------CAGCTTgtaattacattggccttatccacgattcatgttggactggcactggacat Alignment from CESAR GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCACAGAATGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCT------CAGCTTgtaattacattggccttatccacgattcatgttggactggcactggacat Alignment from Spaln_aa2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCACAGAATGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCTCAGCTTGTAATTACATTGGCCTTATCCACGATTCATGTTGGACTGgcactggacat Alignment from Spaln_nt2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCACAGAATGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAG------CTCAGCTTgtaattacattggccttatccacgattcatgttggactggcactggacat Alignment from Pairagon GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCC-CAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACC----------CAGCAT gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCACAGAA-TGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCTCAGCTTgtaattacattggccttatccacgattcatgttggactggcactggacat Alignment from Exonerate_protein2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCACAGAATGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCTCAGCTTGTAATTACATTGGCCTTATCCACGATTCATGTTGGACTGgcactggacat Alignment from Exonerate_coding2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCACAGAATGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCTCAGCTTGTAATTACATTGGCCTTATCCACGATTCATGTTGGACTGgcactggacat Alignment from GeneWise GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCACAGAATGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCT------CAGCTTGTAATTACATTGGCCTTATCCACGATT---CATgttggactggcactgga #### Cabp2_ID289_4 --> 2 - 1 Original Alignment agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAG-CTCATTGAGATATCACAACAGATCa tgttaacccccttataacagctatggtgctctcatcccccatccccttagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATTGGGTACCGGGAGCTGGGTGACTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCCTCA-AGAGATATCACAACAGGTTagtaagggtgacttttgtggtcagtgcatgtagccccctggcacatggtgc Alignment from CESAR agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa tgttaacccccttataacagctatggtgctctcatcccccatccccttagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATTGGGTACCGGGAGCTGGGTGACTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCCTCAAGAGATATCACAACAGGTTagtaagggtgacttttgtggtcagtgcatgtagccccctggcacatggtgc Alignment from Spaln_aa2Genome CTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tgttaacccccttataacagctatggtgctctcatcccccatccccttagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATTGGGTACCGGGAGCTGGGTGACTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCCTCAAGAGATATCACAACAGGTTAgtaagggtgacttttgtggtcagtgcatgtagccccctggcacatggtgc Alignment from Spaln_nt2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAG tgttaacccccttataacagctatggtgctctcatcccccatccccttagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATTGGGTACCGGGAGCTGGGTGACTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCCTCAAGAGATATCACAACAGgttagtaagggtgacttttgtggtcagtgcatgtagccccctggcacatggtgc Alignment from Pairagon CGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tgttaacccccttataacagctatggtgctctcatcccccatccccttag-----------------------------------------------AGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATTGGGTACCGGGAGCTGGGTGACTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCCTCAAGAGATATCACAACAGGTTAgtaagggtgacttttgtggtcagtgcatgtagccccctggcacatggtgc Alignment from Exonerate_protein2genome CTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tgttaacccccttataacagctatggtgctctcatcccccatccccttagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATTGGGTACCGGGAGCTGGGTGACTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCCTCAAGAGATATCACAACAGGTTAgtaagggtgacttttgtggtcagtgcatgtagccccctggcacatggtgc Alignment from Exonerate_coding2genome CTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tgttaacccccttataacagctatggtgctctcatcccccatccccttagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATTGGGTACCGGGAGCTGGGTGACTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCCTCAAGAGATATCACAACAGGTTAgtaagggtgacttttgtggtcagtgcatgtagccccctggcacatggtgc Alignment from GeneWise CTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tgttaacccccttataacagctatggtgctctcatcccccatccccttagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGACGGCTACATTGGGTACCGGGAGCTGGGTGACTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCCTCAAGAGATATCACAACAGGTTAgtaagggtgacttttgtggtcagtgcatgtagccccctggcacatggtgc #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACAGACCTG-GATGGTGTTGTGACCTTTGATCTATTTAAG gcaaggagaaccaggggaagccagccagatgttcggtgttttgtacatagggTTTTCCAAACTACTAGACCGAGGCCTGCGATGGTGTTG-TACCTTTGATCTTTTTAAGgtaaggatataagaatgaattctaacccatctgatcattaagatgtaatc Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTG-GATGGTGTTGTGACCTTTGATCTATTTAAG gcaaggagaaccaggggaagccagccagatgttcggtgttttgtacatagggTTTTCCAAACTACTAGACCGAGGCCTGCGATGGTGTTG-TACCTTTGATCTTTTTAAGgtaaggatataagaatgaattctaacccatctgatcattaagatgtaatc Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG gcaaggagaaccaggggaagccagccagatgttcggtgttttgtacatagGGTTTTCCAAACTACTAGACCGAGGCCTGCGATGGTGTTGTACCTTTGATCTTTTTAAGgtaaggatataagaatgaattctaacccatctgatcattaagatgtaatc Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTG-GATGGTGTTGTGACCTTTGATCTATTTAAG gcaaggagaaccaggggaagccagccagatgttcggtgttttgtacatagGGTTTTCCAAACTACTAGACCGAGGCCTGCGATGGTGTTGT-ACCTTTGATCTTTTTAAGgtaaggatataagaatgaattctaacccatctgatcattaagatgtaatc Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGACCTG-GATGGTGTTGTGACCTTTGATCTATTTAAG gcaaggagaaccaggggaagccagccagatgttcggtgttttgtacatagGGTTTTCCAAACTACTAGACCGAGGCCTGCGATGGTGTTGT-ACCTTTGATCTTTTTAAGgtaaggatataagaatgaattctaacccatctgatcattaagatgtaatc Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG gcaaggagaaccaggggaagccagccagatgttcggtgttttgtacatagGGTTTTCCAAACTACTAGACCGAGGCCTGCGATGGTGTTGTACCTTTGATCTTTTTAAGgtaaggatataagaatgaattctaacccatctgatcattaagatgtaatc Alignment from Exonerate_coding2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG gcaaggagaaccaggggaagccagccagatgttcggtgttttgtacatagGGTTTTCCAAACTACTAGACCGAGGCCTGCGATGGTGTTGTACCTTTGATCTTTTTAAGgtaaggatataagaatgaattctaacccatctgatcattaagatgtaatc Alignment from GeneWise gcaaggagaaccaggggaagccagccagatgttcggtgttttgtacatagggttttccaaactactagaccgaggcctgcgatggtgttgtacctttgatctttttaaggtaaggatataagaatgaattctaacccatctgatcattaagatgtaatc #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAG-TTCAACATCCTGTGGAACCGCATCCGAAATTACCTG gatgatgaatgctgaagccaaagtatttacaagatgtctttttttaacagCGAGATGGAAATGGGAAGTTAGGCCTGGTGGTACTTCAATATCC-GTGGAACCACATCCGTAATTATCTGgtgagtaatgagatattcactgccatgttccttgaaagcccagagcccaa Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG gatgatgaatgctgaagccaaagtatttacaagatgtctttttttaacagCGAGATGGAAATGGGAAGTTAGGCCTGGTGGTACTTCAATATCCGTGGAACCACATCCGTAATTATCTGgtgagtaatgagatattcactgccatgttccttgaaagcccagagcccaa Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG gatgatgaatgctgaagccaaagtatttacaagatgtctttttttaacagCGAGATGGAAATGGGAAGTTAGGCCTGGTGGTACTTCAATATCCGTGGAACCACATCCGTAATTATCTGgtgagtaatgagatattcactgccatgttccttgaaagcccagagcccaa Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG gatgatgaatgctgaagccaaagtatttacaagatgtctttttttaacagCGAGATGGAAATGGGAAGTTAGGCCTGGTGGTACTTCAATATCCGTGGAACCACATCCGTAATTATCTGgtgagtaatgagatattcactgccatgttccttgaaagcccagagcccaa Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGTCTGGTGG-AGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG gatgatgaatgctgaagccaaagtatttacaagatgtctttttttaacagCGAGATGGAAATGGGAAGTTAGGCCTGGTGGTACTTCAATATCC-GTGGAACCACATCCGTAATTATCTGgtgagtaatgagatattcactgccatgttccttgaaagcccagagcccaa Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG gatgatgaatgctgaagccaaagtatttacaagatgtctttttttaacagCGAGATGGAAATGGGAAGTTAGGCCTGGTGGTACTTCAATATCCGTGGAACCACATCCGTAATTATCTGgtgagtaatgagatattcactgccatgttccttgaaagcccagagcccaa Alignment from Exonerate_coding2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG gatgatgaatgctgaagccaaagtatttacaagatgtctttttttaacagCGAGATGGAAATGGGAAGTTAGGCCTGGTGGTACTTCAATATCCGTGGAACCACATCCGTAATTATCTGgtgagtaatgagatattcactgccatgttccttgaaagcccagagcccaa Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG gatgatgaatgctgaagccaaagtatttacaagatgtctttttttaacagCGAGATGGAAATGGGAAGTTAGGCCTGGTGGTACTTCAATATCCGTGGAACCACATCCGTAATTATCTGgtgagtaatgagatattcactgccatgttccttgaaagcccagagcccaa #### Capn1_ID1363_13 --> 1 - 0 Original Alignment gGAACTAGATGAC-CAGATCCAGGCCAACCTCCCTGATGAG cttccatatgcgggtttgaacccctttataatttctgttaaatatttcaggGAACTAGATGACCCAGATTC-GGTTAACCTCCCTGATGAAgtgggctcccatgtgactctggtagcctctcagttttcattccaactagc Alignment from CESAR gGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG cttccatatgcgggtttgaacccctttataatttctgttaaatatttcaggGAACTAGATGACCCAGATTCGGTTAACCTCCCTGATGAAgtgggctcccatgtgactctggtagcctctcagttttcattccaactagc Alignment from Spaln_aa2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG cttccatatgcgggtttgaacccctttataatttctgttaaatatttcagGGAACTAGATGACCCAGATTCGGTTAACCTCCCTGATGAAgtgggctcccatgtgactctggtagcctctcagttttcattccaactagc Alignment from Spaln_nt2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG cttccatatgcgggtttgaacccctttataatttctgttaaatatttcagGGAACTAGATGACCCAGATTCGGTTAACCTCCCTGATGAAgtgggctcccatgtgactctggtagcctctcagttttcattccaactagc Alignment from Pairagon GGAACTAGATGA-CCAGATCCAGGCCAACCTCCCTGATGAG cttccatatgcgggtttgaacccctttataatttctgttaaatatttcagGGAACTAGATGACCCAGATTC-GGTTAACCTCCCTGATGAAgtgggctcccatgtgactctggtagcctctcagttttcattccaactagc Alignment from Exonerate_protein2genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG cttccatatgcgggtttgaacccctttataatttctgttaaatatttcagGGAACTAGATGACCCAGATTCGGTTAACCTCCCTGATGAAgtgggctcccatgtgactctggtagcctctcagttttcattccaactagc Alignment from Exonerate_coding2genome CCAACCTCCCTGA CTTCCATATGCGGgtttgaacccctttataatttctgttaaatatttcagggaactagatgacccagattcggttaacctccctgatgaagtgggctcccatgtgactctggtagcctctcagttttcattccaactagc Alignment from GeneWise GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG cttccatatgcgggtttgaacccctttataatttctgttaaatatttcagGGAACTAGATGACCCAGATTCGGTTAACCTCCCTGATGAAgtgggctcccatgtgactctggtagcctctcagttttcattccaactagc #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACA-GACATCTGCCAGGGAGCACTGg cggaccaagcatggctggggcccatggaacactgcccgtcccatccccagGAACTGATGTCAAATCCCCAATTCATTGTAGACGGAGCCACCCGAACACGACATCT-CCAAGGTGCACTAggtgaagaaatacctctaggaatgggctgctgtgtgagctgagctttgttt Alignment from CESAR GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg cggaccaagcatggctggggcccatggaacactgcccgtcccatccccagGAACTGATGTCAAATCCCCAATTCATTGTAGACGGAGCCACCCGAACACGACATCTCCAAGGTGCACTAggtgaagaaatacctctaggaatgggctgctgtgtgagctgagctttgttt Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG cggaccaagcatggctggggcccatggaacactgcccgtcccatccccagGAACTGATGTCAAATCCCCAATTCATTGTAGACGGAGCCACCCGAACACGACATCTCCAAGGTGCACTAGgtgaagaaatacctctaggaatgggctgctgtgtgagctgagctttgttt Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACA-GACATCTGCCAGGGAGCACTGG cggaccaagcatggctggggcccatggaacactgcccgtcccatccccagGAACTGATGTCAAATCCCCAATTCATTGTAGACGGAGCCACCCGAACACGACATCT-CCAAGGTGCACTAGgtgaagaaatacctctaggaatgggctgctgtgtgagctgagctttgttt Alignment from Pairagon GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACA-GACATCTGCCAGGGAGCACTGG cggaccaagcatggctggggcccatggaacactgcccgtcccatccccagGAACTGATGTCAAATCCCCAATTCATTGTAGACGGAGCCACCCGAACACGACATCT-CCAAGGTGCACTAGgtgaagaaatacctctaggaatgggctgctgtgtgagctgagctttgttt Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG cggaccaagcatggctggggcccatggaacactgcccgtcccatccccagGAACTGATGTCAAATCCCCAATTCATTGTAGACGGAGCCACCCGAACACGACATCTCCAAGGTGCACTAGgtgaagaaatacctctaggaatgggctgctgtgtgagctgagctttgttt Alignment from Exonerate_coding2genome cggaccaagcatggctggggcccatggaacactgcccgtcccatccccaggaactgatgtcaaatccccaattcattgtagacggagccacccgaacacgacatctccaaggtgcactaggtgaagaaatacctctaggaatgggctgctgtgtgagctgagctttgttt Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG cggaccaagcatggctggggcccatggaacactgcccgtcccatccccagGAACTGATGTCAAATCCCCAATTCATTGTAGACGGAGCCACCCGAACACGACATCTCCAAGGTGCACTAGgtgaagaaatacctctaggaatgggctgctgtgtgagctgagctttgttt #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGC-CTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tacgtagtcaatttcattgccttgcctgaactggtcatctttattaccaggaAATATGCTCCTCTGCCTGTCC---GCCTGGTTAATGAAAGTGGCAACACCAAGGCAGGAGGGTGAGGCGGTTTTACTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTCTTGACGT-TCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCTGGGCGTGGCAAGGAGGCAGCAGAGCTGGCCCGAAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGCAGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAGGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCAAGGgtaactatacatctctgcatactctgaatatgttcctagttgtgtattct Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tacgtagtcaatttcattgccttgcctgaactggtcatctttattaccaggaAATATGCTCCTCTGCCTGTCC---GCCTGGTTAATGAAAGTGGCAACACCAAGGCAGGAGGGTGAGGCGGTTTTACTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTCTTGACGTTCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCTGGGCGTGGCAAGGAGGCAGCAGAGCTGGCCCGAAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGCAGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAGGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCAAGGgtaactatacatctctgcatactctgaatatgttcctagttgtgtattct Alignment from Spaln_aa2Genome AACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tacgtagtcaatttcattgccttgcctgaactggtcatctttattaccagGAAATATGCTCCTCTGCCTGTCC---GCCTGGTTAATGAAAGTGGCAACACCAAGGCAGGAGGGTGAGGCGGTTTTACTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTCTTGACGTTCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCTGGGCGTGGCAAGGAGGCAGCAGAGCTGGCCCGAAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGCAGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAGGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCAAGGgtaactatacatctctgcatactctgaatatgttcctagttgtgtattct Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCT-GACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tacgtagtcaatttcattgccttgcctgaactggtcatctttattaccagGAAATATGCTCCTCTGCCTGTCC---GCCTGGTTAATGAAAGTGGCAACACCAAGGCAGGAGGGTGAGGCGGTTTTACTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTCTTGACGTT-CTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCTGGGCGTGGCAAGGAGGCAGCAGAGCTGGCCCGAAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGCAGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAGGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCAAGGgtaactatacatctctgcatactctgaatatgttcctagttgtgtattct Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGG-GGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tacgtagtcaatttcattgccttgcctgaactggtcatctttattaccagGAAATATGCTCCTCTGCCTGTCC---GCCTGGTTAATGAAAGTGGCAACACCAAGGCAGGAGGGTGAGGCGGTTTTACTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTCTTGACGTT-CTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCTGGGCGTGGCAAGGAGGCAGCAGAGCTGGCCCGAAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGCAGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAGGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCAAGGgtaactatacatctctgcatactctgaatatgttcctagttgtgtattct Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tacgtagtcaatttcattgccttgcctgaactggtcatctttattaccagGAAATATGCTCCTCTGCCTGTCC---GCCTGGTTAATGAAAGTGGCAACACCAAGGCAGGAGGGTGAGGCGGTTTTACTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTCTTGACGTTCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCTGGGCGTGGCAAGGAGGCAGCAGAGCTGGCCCGAAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGCAGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAGGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCAAGGgtaactatacatctctgcatactctgaatatgttcctagttgtgtattct Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tacgtagtcaatttcattgccttgcctgaactggtcatctttattaccagGAAATATGCTCCTCTGCCTGTCC---GCCTGGTTAATGAAAGTGGCAACACCAAGGCAGGAGGGTGAGGCGGTTTTACTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTCTTGACGTTCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCTGGGCGTGGCAAGGAGGCAGCAGAGCTGGCCCGAAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGCAGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAGGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCAAGGgtaactatacatctctgcatactctgaatatgttcctagttgtgtattct Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tacgtagtcaatttcattgccttgcctgaactggtcatctttattaccagGAAATATGCTCCTCTGCCTGTCC---GCCTGGTTAATGAAAGTGGCAACACCAAGGCAGGAGGGTGAGGCGGTTTTACTGGTTTCTCAAGTTGTGAGTTTCTATCCAGGTGGTCTTGACGTTCTGGATGACTTTGTTCCACCTCGGCATGCTACTTACTTCCTGGCAGGTCTGGGGCCAGAATCTGGGCGTGGCAAGGAGGCAGCAGAGCTGGCCCGAAATCTTACTTGCCCTACAGGAACTTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGGTGGCTACTTTCCCAGCAGAGCAGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAGGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCCTCAAGGgtaactatacatctctgcatactctgaatatgttcctagttgtgtattct #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATC-ACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccatctgcttcaatgatgacttaacttttctctgtttcttctcccaccagtATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGGTCTTTACCCTCAATCCACAGCCA-CCTCACCCTCATGTTTACCTGCCACtgtatgatgcacaatggaagttggatacaattattctaaatatgttaggta Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccatctgcttcaatgatgacttaacttttctctgtttcttctcccaccagtATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGGTCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACtgtatgatgcacaatggaagttggatacaattattctaaatatgttaggta Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatctgcttcaatgatgacttaacttttctctgtttcttctcccaccagTATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGGTCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACTgtatgatgcacaatggaagttggatacaattattctaaatatgttaggta Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATC-ACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatctgcttcaatgatgacttaacttttctctgtttcttctcccaccagTATTTTGACTAGAGTCCAGGAAGTAGCTG---CCCTTAGTGGGTCTTTACCCTCAATCCACAGCCA-CCTCACCCTCATGTTTACCTGCCACTgtatgatgcacaatggaagttggatacaattattctaaatatgttaggta Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCAT-CACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatctgcttcaatgatgacttaacttttctctgtttcttctcccaccagTATTTTGACTAGAGTCCAGGAAGTAGCTG---CCCTTAGTGGGTCTTTACCCTCAATCCACAGCCA-CCTCACCCTCATGTTTACCTGCCACTgtatgatgcacaatggaagttggatacaattattctaaatatgttaggta Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatctgcttcaatgatgacttaacttttctctgtttcttctcccaccagTATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGGTCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACTgtatgatgcacaatggaagttggatacaattattctaaatatgttaggta Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatctgcttcaatgatgacttaacttttctctgtttcttctcccaccagTATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGGTCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACTgtatgatgcacaatggaagttggatacaattattctaaatatgttaggta Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccatctgcttcaatgatgacttaacttttctctgtttcttctcccaccagTATTTTGACTAGAGTCCAGGAAGTAGCT---GCCCTTAGTGGGTCTTTACCCTCAATCCACAGCCACCTCACCCTCATGTTTACCTGCCACTgtatgatgcacaatggaagttggatacaattattctaaatatgttaggta #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTC-AAAGGCCTAGAGAAAGTGAAGCTGGAG tcctcactcataagccccatttatgcaactctttttaaaatgttttatagtCTAGTAATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCTGCTCCAAAGGCC-GGAGAAAGTGAAGCTGGAAgtaagaacgatgtagaagcacagataatccagatgtgctgtgcaaagatg Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG tcctcactcataagccccatttatgcaactctttttaaaatgttttatagtCTAGTAATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaagaacgatgtagaagcacagataatccagatgtgctgtgcaaagatg Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG tcctcactcataagccccatttatgcaactctttttaaaatgttttatagTCTAGTAATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaagaacgatgtagaagcacagataatccagatgtgctgtgcaaagatg Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG tcctcactcataagccccatttatgcaactctttttaaaatgttttatagTCTAGTAATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaagaacgatgtagaagcacagataatccagatgtgctgtgcaaagatg Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG tcctcactcataagccccatttatgcaactctttttaaaatgttttatagTCTAGTAATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaagaacgatgtagaagcacagataatccagatgtgctgtgcaaagatg Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG tcctcactcataagccccatttatgcaactctttttaaaatgttttatagTCTAGTAATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaagaacgatgtagaagcacagataatccagatgtgctgtgcaaagatg Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG tcctcactcataagccccatttatgcaactctttttaaaatgttttatagTCTAGTAATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaagaacgatgtagaagcacagataatccagatgtgctgtgcaaagatg Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG tcctcactcataagccccatttatgcaactctttttaaaatgttttatagTCTAGTAATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCTGCTCCAAAGGCCGGAGAAAGTGAAGCTGGAAgtaagaacgatgtagaagcacagataatccagatgtgctgtgcaaagatg #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment gGACCAGCTTAAT-GCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa gctaccttaaggtcagattgatgctaccaaatgcctgcttttctcttcaggGACCAACTCAATCGGGTTGCGTC-ACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTaagtaatatagcaccttatgtttcatgattagtattttgctttattccacag Alignment from CESAR gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa gctaccttaaggtcagattgatgctaccaaatgcctgcttttctcttcaggGACCAACTCAATCGGGTTGCGTCACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTaagtaatatagcaccttatgtttcatgattagtattttgctttattccacag Alignment from Spaln_aa2Genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA gctaccttaaggtcagattgatgctaccaaatgcctgcttttctcttcagGGACCAACTCAATCGGGTTGCGTCACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTAAgtaatatagcaccttatgtttcatgattagtattttgctttattccacag Alignment from Spaln_nt2Genome GGACCAGCTTAAT-GCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA gctaccttaaggtcagattgatgctaccaaatgcctgcttttctcttcagGGACCAACTCAATCGGGTTGCGTC-ACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTAAgtaatatagcaccttatgtttcatgattagtattttgctttattccacag Alignment from Pairagon GGACCAGCTTAATGCCTTGCGCCGGG---------AGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA gctaccttaaggtcagattgatgctaccaaatgcctgcttttctcttcagGGACCAACTCAAT---------CGGGTTGCGTCACAGAAACAGAAGCTGTTGG---ATATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTAAgtaatatagcaccttatgtttcatgattagtattttgctttattccacag Alignment from Exonerate_protein2genome gctaccttaaggtcagattgatgctaccaaatgcctgcttttctcttcagggaccaactcaatcgggttgcgtcacagaaacagaagctgttggatatcatggaccaataccgggtagtacagcctgggccactcccccatgctaagtaatatagcaccttatgtttcatgattagtattttgctttattccacag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA gctaccttaaggtcagattgatgctaccaaatgcctgcttttctcttcagGGACCAACTCAATCGGGTTGCGTCACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTAAgtaatatagcaccttatgtttcatgattagtattttgctttattccacag #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTG-AGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct cttcaatggataggttaactaataaattcaggttttatgtttgttttcagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCACAGCCGCA-AAACAGGGAGTTGCAAGAGTGTAGTTTGGAGAGT---GACCCCGTGCATTGTGAGCAGCCAGAATACctgtgggcccaacttaaggtcagattgatgctaccttaaggtcagattgatg Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct cttcaatggataggttaactaataaattcaggttttatgtttgttttcagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCACAGCCGCAAAACAGGGAGTTGCAAGAGTGTAGTTTGGAGAGT---GACCCCGTGCATTGTGAGCAGCCAGAATACctgtgggcccaacttaaggtcagattgatgctaccttaaggtcagattgatg Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT cttcaatggataggttaactaataaattcaggttttatgtttgttttcagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCACAGCCGCAAAACAGGGAGTTGCAAGAGTGTAGTTTGGAGAGT---GACCCCGTGCATTGTGAGCAGCCAGAATACCTgtgggcccaacttaaggtcagattgatgctaccttaaggtcagattgatg Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCC-CTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT cttcaatggataggttaactaataaattcaggttttatgtttgttttcagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCACAGCC-GCAAAACAGGGAGTTGCAAGAGTGTAGTTTGGAGA---GTGACCCCGTGCATTGTGAGCAGCCAGAATACCTgtgggcccaacttaaggtcagattgatgctaccttaaggtcagattgatg Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGC-------CCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT cttcaatggataggttaactaataaattcaggttttatgtttgttttcagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCACAGCC-------GCAAAACAGGGAGTTGCAAGAGTGTAGTTTGGAGA---GTGACCCCGTGCATTGTGAGCAGCCAGAATACCTgtgggcccaacttaaggtcagattgatgctaccttaaggtcagattgatg Alignment from Exonerate_protein2genome cttcaatggataggttaactaataaattcaggttttatgtttgttttcagctcttaacacagcttcatacagtacaaaaagaggagaataggcagcttttagtagaggtgaaggcttcacagccgcaaaacagggagttgcaagagtgtagtttggagagtgaccccgtgcattgtgagcagccagaatacctgtgggcccaacttaaggtcagattgatgctaccttaaggtcagattgatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT cttcaatggataggttaactaataaattcaggttttatgtttgttttcagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCACAGCCGCAAAACAGGGAGTTGCAAGAGTGTAGTTTGGAGAGT---GACCCCGTGCATTGTGAGCAGCCAGAATACCTgtgggcccaacttaaggtcagattgatgctaccttaaggtcagattgatg #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAG-CTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg aggcctaatgggcagatagctctggcacggcactgtactttctcccacagGACCTGGACTCACTGCGGCATCAGTTGGAACAGCTTAG-GGAAGAGAACGTAGAGCTGGAGTTGGAGCTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGggtgagttgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg aggcctaatgggcagatagctctggcacggcactgtactttctcccacagGACCTGGACTCACTGCGGCATCAGTTGGAACAGCTTAGGGAAGAGAACGTAGAGCTGGAGTTGGAGCTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGggtgagttgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatgggcagatagctctggcacggcactgtactttctcccacagGACCTGGACTCACTGCGGCATCAGTTGGAACAGCTTAGGGAAGAGAACGTAGAGCTGGAGTTGGAGCTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagttgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatgggcagatagctctggcacggcactgtactttctcccacagGACCTGGACTCACTGCGGCATCAGTTGGAACAGCTTAGGGAAGAGAACGTAGAGCTGGAGTTGGAGCTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagttgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatgggcagatagctctggcacggcactgtactttctcccacagGACCTGGACTCACTGCGGCATCAGTTGGAACAGCTTAGGGAAGAGAACGTAGAGCTGGAGTTGGAGCTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagttgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatgggcagatagctctggcacggcactgtactttctcccacagGACCTGGACTCACTGCGGCATCAGTTGGAACAGCTTAGGGAAGAGAACGTAGAGCTGGAGTTGGAGCTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagttgtagcagacaggatttggcaaggaacctttagtcttaagaaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatgggcagatagctctggcacggcactgtactttctcccacagGACCTGGACTCACTGCGGCATCAGTTGGAACAGCTTAGGGAAGAGAACGTAGAGCTGGAGTTGGAGCTACAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtgagttgtagcagacaggatttggcaaggaacctttagtcttaagaaga #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCA-CGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCATCAGAA---GAGGCAGGTCACCTGCCCCCACCTGCAGG-AGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCATCA---GAAGAGGCAGGTCACCTGCCCCCACCTGCAGGAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCA---TCAGAAGAGGCAGGTCACCTGCCCCCACCTGCAGGAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACG-CCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCA--TCAGAAG-AGGCAGGTCACCTGCCCCCACCTGCAGG-AGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCA------------------CTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCATCAGAAGAGGCAGGTCACCTGC--------------------CCCCACCTGCAGG-AGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Exonerate_protein2genome GGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAGACTCAG----GCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ACTCCTTCACTGGCAGCCCCCTGTCCAGTATTTTCTGTTTTCTACTGAAGACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCATCAGAAGAGGCAGGTCACCTGCCCCCACCTGCAGGAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Exonerate_coding2genome actccttcactggcagccccctgtccagtattttctgttttctactgaagactcaggcattgtctgcccaagcaaagtgcaccgaactctgctgtgaagaggcagaggcatcagaagaggcaggtcacctgcccccacctgcaggagatcttcgaagatgctgggagaagcttcaagctgcagaagtcttcaagggacatttggaagtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCA---TCAGAAGAGGCAGGTCACCTGCCCCCACCTGCAGGAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATC-CTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg agagcccaggcacctagctcagacacattctaacccctgctcctttaaagGAAGAGCTACAGCTTTTAATACTTAT-TACATCACCAGACCTCCAGCCTACAGGGTGTGAACCCTTTTCAggtatgtgttctaaccttgtctatcactagactaccatgtataccctcatc Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg agagcccaggcacctagctcagacacattctaacccctgctcctttaaagGAAGAGCTACAGCTTTTAATACTTATTACATCACCAGACCTCCAGCCTACAGGGTGTGAACCCTTTTCAggtatgtgttctaaccttgtctatcactagactaccatgtataccctcatc Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG agagcccaggcacctagctcagacacattctaacccctgctcctttaaagGAAGAGCTACAGCTTTTAATACTTATTACATCACCAGACCTCCAGCCTACAGGGTGTGAACCCTTTTCAGgtatgtgttctaaccttgtctatcactagactaccatgtataccctcatc Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG agagcccaggcacctagctcagacacattctaacccctgctcctttaaagGAAGAGCTACAGCTTTTAATACTTATTACATCACCAGACCTCCAGCCTACAGGGTGTGAACCCTTTTCAGgtatgtgttctaaccttgtctatcactagactaccatgtataccctcatc Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCT------ATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG agagcccaggcacctagctcagacacattctaacccctgctcctttaaagGAAGAGCTACAGCTTTTAATACTTATTACATCA------CCAGACCTCCAGCCTACAGGGTGTGAACCCTTTTCAGgtatgtgttctaaccttgtctatcactagactaccatgtataccctcatc Alignment from Exonerate_protein2genome agagcccaggcacctagctcagacacattctaacccctgctcctttaaaggaagagctacagcttttaatacttattacatcaccagacctccagcctacagggtgtgaacccttttcaggtatgtgttctaaccttgtctatcactagactaccatgtataccctcatc Alignment from Exonerate_coding2genome agagcccaggcacctagctcagacacattctaacccctgctcctttaaaggaagagctacagcttttaatacttattacatcaccagacctccagcctacagggtgtgaacccttttcaggtatgtgttctaaccttgtctatcactagactaccatgtataccctcatc Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG agagcccaggcacctagctcagacacattctaacccctgctcctttaaagGAAGAGCTACAGCTTTTAATACTTATTACATCACCAGACCTCCAGCCTACAGGGTGTGAACCCTTTTCAGgtatgtgttctaaccttgtctatcactagactaccatgtataccctcatc #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCAT-CTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagtTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCCTATGGG-GCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagtTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCCTATGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattc Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCCTATGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCCTATGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCCTATGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from Exonerate_protein2genome ctttattattaacaggactctgagtatctaaagcatttttttccctccagttctccaagttctcaagggggagttcgtatggtcagaggacgcgatggtacagctgcttgtcagatgtggacactctgtcatcctatggggcagttgagagacttttatcaggtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCCTATGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCT-CCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct cctaatattaagcattctatactgtaggagtctttattttacatgcacagatTATGCCTTTCTGAATTATGCACCCTCCTTAATAGCAGCTGCATGTGTGGCCTTTTCCAGGATTATACTCCAACTGTCTCCCAACCT-GCCTACAAGACTACACTGTTACACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATCGctgtaagtagagtcacatgattgaactcagactgccatggtgattgctgtat Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct cctaatattaagcattctatactgtaggagtctttattttacatgcacagatTATGCCTTTCTGAATTATGCACCCTCCTTAATAGCAGCTGCATGTGTGGCCTTTTCCAGGATTATACTCCAACTGTCTCCCAACCTGCCTACAAGACTACACTGTTACACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATCGctgtaagtagagtcacatgattgaactcagactgccatggtgattgctgtat Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT cctaatattaagcattctatactgtaggagtctttattttacatgcacagATTATGCCTTTCTGAATTATGCACCCTCCTTAATAGCAGCTGCATGTGTGGCCTTTTCCAGGATTATACTCCAACTGTCTCCCAACCTGCCTACAAGACTACACTGTTACACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATCGCTgtaagtagagtcacatgattgaactcagactgccatggtgattgctgtat Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT cctaatattaagcattctatactgtaggagtctttattttacatgcacagATTATGCCTTTCTGAATTATGCACCCTCCTTAATAGCAGCTGCATGTGTGGCCTTTTCCAGGATTATACTCCAACTGTCTCCCAACCTGCCTACAAGACTACACTGTTACACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATCGCTgtaagtagagtcacatgattgaactcagactgccatggtgattgctgtat Alignment from Pairagon ------------------------------------------------AGATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT CCTAATATTAAGCATTCTATACTGTAGGAGTCTTTATTTTACATGCACAGATTATGCCTTTCTGAATTATGCACCCTCCTTAATAGCAGCTGCATGTGTGGCCTTTTCCAGGATTATACTCCAACTGTCTCCCAACCTGCCTACAAGACTACACTGTTACACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATCGCTgtaagtagagtcacatgattgaactcagactgccatggtgattgctgtat Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT cctaatattaagcattctatactgtaggagtctttattttacatgcacagATTATGCCTTTCTGAATTATGCACCCTCCTTAATAGCAGCTGCATGTGTGGCCTTTTCCAGGATTATACTCCAACTGTCTCCCAACCTGCCTACAAGACTACACTGTTACACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATCGCTgtaagtagagtcacatgattgaactcagactgccatggtgattgctgtat Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT cctaatattaagcattctatactgtaggagtctttattttacatgcacagATTATGCCTTTCTGAATTATGCACCCTCCTTAATAGCAGCTGCATGTGTGGCCTTTTCCAGGATTATACTCCAACTGTCTCCCAACCTGCCTACAAGACTACACTGTTACACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATCGCTgtaagtagagtcacatgattgaactcagactgccatggtgattgctgtat Alignment from GeneWise ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT cctaatattaagcattctatactgtaggagtctttattttacatgcacagATTATGCCTTTCTGAATTATGCACCCTCCTTAATAGCAGCTGCATGTGTGGCCTTTTCCAGGATTATACTCCAACTGTCTCCCAACCTGCCTACAAGACTACACTGTTACACGGCATACTCCTGGGCCTTCTTGGTTCAGTGTATGGAATGGTTATCGCTgtaagtagagtcacatgattgaactcagactgccatggtgattgctgtat #### Ccs_ID661_7 --> 0 - 2 Original Alignment GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCAT-CCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gTTGGCCT gtgcatatgaagggcagatgaatctgactccctcctttatctttgaatagGTTTGGGATGTGATTGCCCGCACCTTGGTTATTGATGAGGGAGAAGACGATGTGGGCTGGGGGGGCCACCCCTT-ATCCAAGATTACTGGGAATTTAGAGAAAaggtaagccatatcacaatcaaacttgactgtgttgttttacagaCTCTCAT Alignment from CESAR GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gTTGGCCT gtgcatatgaagggcagatgaatctgactccctcctttatctttgaatagGTTTGGGATGTGATTGCCCGCACCTTGGTTATTGATGAGGGAGAAGACGATGTGGGCTGGGGGGGCCACCCCTTATCCAAGATTACTGGGAATTTAGAGAAAaggtaagccatatcacaatcaaaactcctgggtttttttctcagaCTCTCAT Alignment from Spaln_aa2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG GTTGGCCT gtgcatatgaagggcagatgaatctgactccctcctttatctttgaatagGTTTGGGATGTGATTGCCCGCACCTTGGTTATTGATGAGGGAGAAGACGATGTGGGCTGGGGGGGCCACCCCTTATCCAAGATTACTGGGAATTTAGAGAAAAGgtaagccatatcacaatcaaacttgactgtgttgttttacagACTCTCAT Alignment from Spaln_nt2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG GTTGGCCT gtgcatatgaagggcagatgaatctgactccctcctttatctttgaatagGTTTGGGATGTGATTGCCCGCACCTTGGTTATTGATGAGGGAGAAGACGATGTGGGCTGGGGGGGCCACCCCTTATCCAAGATTACTGGGAATTTAGAGAAAAGgtaagccatatcacaatcaaacttgactgtgttgttttacagACTCTCAT Alignment from Pairagon ------------------------------------------------AGGTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGGTTGGCC------------------------------------------T GTGCATATGAAGGGCAGATGAATCTGACTCCCTCCTTTATCTTTGAATAGGTTTGGGATGTGATTGCCCGCACCTTGGTTATTGATGAGGGAGAAGACGATGTGGGCTGGGGGGGCCACCCCTTATCCAAGATTACTGGGAATTTAGAGAAAAGGTAAGCCATATCACAATCAAACTTGACTGTGTTGTTTTACAGACTCTCAT Alignment from Exonerate_protein2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG GTTGGCCT gtgcatatgaagggcagatgaatctgactccctcctttatctttgaatagGTTTGGGATGTGATTGCCCGCACCTTGGTTATTGATGAGGGAGAAGACGATGTGGGCTGGGGGGGCCACCCCTTATCCAAGATTACTGGGAATTTAGAGAAAAGgtaagccatatcacaatcaaacttgactgtgttgttttacagACTCTCAT Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG GTTGGCCT gtgcatatgaagggcagatgaatctgactccctcctttatctttgaatagGTTTGGGATGTGATTGCCCGCACCTTGGTTATTGATGAGGGAGAAGACGATGTGGGCTGGGGGGGCCACCCCTTATCCAAGATTACTGGGAATTTAGAGAAAAGgtaagccatatcacaatcaaacttgactgtgttgttttacagACTCTCAT #### Cd5_ID2994_4 --> 2 - 1 Original Alignment GCTGAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg ACTGAGCCTGAGCTGCCTAggtatgtcactattatttcttttaaatacagaaCCCCAGAGAACTGCTCCTCCACCCCA-AACTGCTCCATCCACCACTGTACCAGAACCCACAggtgcccggatgcacaacaggaaaacaaagcagagaattacattggtataa Alignment from CESAR GCTGAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg ACTGAGCCTGAGCTGCCTAggtacctcactattatttcttttaaatacagaaCCCCAGAGAACTGCTCCTCCACCCCAAACTGCTCCATCCACCACTGTACCAGAACCCACAggtgcccggatgcacaacaggaaaacaaagcagagaattacattggtataa Alignment from Spaln_aa2Genome GCTGAGCCTGATCTGCCTA------------------------------GAGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG ACTGAGCCTGAGCTGCCTAGGTATGTCACTATTATTTCTTTTAAATACAGAACCCCAGAGAACTGCTCCTCCACCCCAAACTGCTCCATCCACCACTGTACCAGAACCCACAGgtgcccggatgcacaacaggaaaacaaagcagagaattacattggtataa Alignment from Spaln_nt2Genome GCTGAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG ACTGAGCCTGAGCTGCCTAGgtatgtcactattatttcttttaaatacagaaccccag--------AGAACTGCTCCTCCACCCCAAACTGCTCCATCCACCACTGTACCAGAACCCACAGgtgcccggatgcacaacaggaaaacaaagcagagaattacattggtataa Alignment from Pairagon GCTGAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG ACTGAGCCTGAGCTGCCTAGgtatgtcactattatttcttttaaatacagAACCCCAGAGAACTGCTCCTCCACCCCAAACTGCTCCATCCACCACTGTACCAGAACCCACAGgtgcccggatgcacaacaggaaaacaaagcagagaattacattggtataa Alignment from Exonerate_protein2genome GCTGAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG ACTGAGCCTGAGCTGCCTAGgtatgtcactattatttcttttaaatacagAACCCCAGAGAACTGCTCCTCCACCCCAAACTGCTCCATCCACCACTGTACCAGAACCCACAGgtgcccggatgcacaacaggaaaacaaagcagagaattacattggtataa Alignment from Exonerate_coding2genome GCTGAGCCTGATCTGCCTAGAGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG ACTGAGCCTGAGCTGCCTAGGTATGTCACTATTATTTCTTTTAAATACAGAACCCCAGAGAACTGCTCCTCCACCCCAAACTGctccatccaccactgtaccagaacccacaggtgcccggatgcacaacaggaaaacaaagcagagaattacattggtataa Alignment from GeneWise GCTGAGCCTGATCTGCCTA------------------------------GAGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG ACTGAGCCTGAGCTGCCTAGGTATGTCACTATTATTTCTTTTAAATACAGAACCCCAGAGAACTGCTCCTCCACCCCAAACTGCTCCATCCACCACTGTACCAGAACCCACAGgtgcccggatgcacaacaggaaaacaaagcagagaattacattggtataa #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGG-GAGATGCTGAAGAGGGCTGAG attgatccttttgtgagtccagtcacaggaccccacttgttcctttccagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCAATGAATATGTTTCATAAGTGGCGAAATGT-GAAGAGGGCTGAGgtaagttggcacaactgtgaaatctatccctacctgtttgctgtgtacag Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG attgatccttttgtgagtccagtcacaggaccccacttgttcctttccagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCAATGAATATGTTTCATAAGTGGCGAAATGTGAAGAGGGCTGAGgtaagttggcacaactgtgaaatctatccctacctgtttgctgtgtacag Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG attgatccttttgtgagtccagtcacaggaccccacttgttcctttccagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCAATGAATATGTTTCATAAGTGGCGAAATGTGAAGAGGGCTGAGgtaagttggcacaactgtgaaatctatccctacctgtttgctgtgtacag Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG attgatccttttgtgagtccagtcacaggaccccacttgttcctttccagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCAATGAATATGTTTCATAAGTGGCGAAATGTGAAGAGGGCTGAGgtaagttggcacaactgtgaaatctatccctacctgtttgctgtgtacag Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGG-GAGATGCTGAAGAGGGCTGAG attgatccttttgtgagtccagtcacaggaccccacttgttcctttccagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCAATGAATATGTTTCATAAGTGGCGAAATG-TGAAGAGGGCTGAGgtaagttggcacaactgtgaaatctatccctacctgtttgctgtgtacag Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG attgatccttttgtgagtccagtcacaggaccccacttgttcctttccagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCAATGAATATGTTTCATAAGTGGCGAAATGTGAAGAGGGCTGAGgtaagttggcacaactgtgaaatctatccctacctgtttgctgtgtacag Alignment from Exonerate_coding2genome attgatccttttgtgagtccagtcacaggaccccacttgttcctttccaggttattgtggtgaggcagagaggaagtggccagatctttgcaatgaatatgtttcataagtggcgaaatgtgaagagggctgaggtaagttggcacaactgtgaaatctatccctacctgtttgctgtgtacag Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG attgatccttttgtgagtccagtcacaggaccccacttgttcctttccagGTTATTGTGGTGAGGCAGAGAGGAAGTGGCCAGATCTTTGCAATGAATATGTTTCATAAGTGGCGAAATGTGAAGAGGGCTGAGgtaagttggcacaactgtgaaatctatccctacctgtttgctgtgtacag #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTT-CTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctacctgtttgctgtgtacagacaacctccgtttgtgctgaaacctacagACAACCTGTCTCCGTGAGGAGCGAGATGTTCCTAGTGA-GCAAGAACATTGTTGGGTGACAGTCTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaagttgttctatgccacaagggagctaccctgacagtactgccttttt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctacctgtttgctgtgtacagacaacctccgtttgtgctgaaacctacagACAACCTGTCTCCGTGAGGAGCGAGATGTTCCTAGTGAGCAAGAACATTGTTGGGTGACAGTCTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaagttgttctatgccacaagggagctaccctgacagtactgccttttt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctacctgtttgctgtgtacagacaacctccgtttgtgctgaaacctacagACAACCTGTCTCCGTGAGGAGCGAGATGTTCCTAGTGAGCAAGAACATTGTTGGGTGACAGTCTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaagttgttctatgccacaagggagctaccctgacagtactgccttttt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTC-TAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctacctgtttgctgtgtacagacaacctccgtttgtgctgaaacctacagACAACCTGTCTCCGTGAGGAGCGAGATGTTCCTAGTG-AGCAAGAACATTGTTGGGTGACAGTCTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaagttgttctatgccacaagggagctaccctgacagtactgccttttt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTT-CTAGTGAAGGGAGACAGCCGC-----------TGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctacctgtttgctgtgtacagacaacctccgtttgtgctgaaacctacagACAACCTGTCTCCGTGAGGAGCGAGATGTTCCTAGTGA------------GCAAGAACATTGTTGGGTGACAGTCTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaagttgttctatgccacaagggagctaccctgacagtactgccttttt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctacctgtttgctgtgtacagacaacctccgtttgtgctgaaacctacagACAACCTGTCTCCGTGAGGAGCGAGATGTTCCTAGTGAGCAAGAACATTGTTGGGTGACAGTCTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaagttgttctatgccacaagggagctaccctgacagtactgccttttt Alignment from Exonerate_coding2genome ctacctgtttgctgtgtacagacaacctccgtttgtgctgaaacctacagacaacctgtctccgtgaggagcgagatgttcctagtgagcaagaacattgttgggtgacagtcttacattactcattccaggatgaggagttcttagtaagttgttctatgccacaagggagctaccctgacagtactgccttttt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctacctgtttgctgtgtacagacaacctccgtttgtgctgaaacctacagACAACCTGTCTCCGTGAGGAGCGAGATGTTCCTAGTGAGCAAGAACATTGTTGGGTGACAGTCTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaagttgttctatgccacaagggagctaccctgacagtactgccttttt #### Cdc42bpg_ID1575_5 --> 0 - 2 Original Alignment TACCTGGTGATGGACTACTATGCTGGCGGG-GACCTTCTC---ACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGC------------TATGTCCACag tgcaatcagacttctggttggataactatgactattgaaatattttacagTACCTGTTGATGGATTTTTATGCTGGTGGTCGATCTTCTAA-AAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATGTGGCTGAGATGGTGTTGGCGATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACaggtaatgaagctagaggtgtgttgttgaggtattgggatcattctttcacc Alignment from CESAR TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACG---CTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGC------------TATGTCCACag tgcaatcagacttctggttggataactatgactattgaaatattttacagTACCTGTTGATGGATTTTTATGCTGGTGGTCGATCTTCTAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATGTGGCTGAGATGGTGTTGGCGATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACaggtaatgaagctagaggtgtgttgttgaggtattgggatcattctttcacc Alignment from Spaln_aa2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACG---CTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGC------------TATGTCCACAG tgcaatcagacttctggttggataactatgactattgaaatattttacagTACCTGTTGATGGATTTTTATGCTGGTGGTCGATCTTCTAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATGTGGCTGAGATGGTGTTGGCGATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGgtaatgaagctagaggtgtgttgttgaggtattgggatcattctttcacc Alignment from Spaln_nt2Genome TACCTGGTGATGGACTACTATGCTGGCGGG-GACCTTCTCACGC--TGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAGGGATGTGAA--G tgcaatcagacttctggttggataactatgactattgaaatattttacagTACCTGTTGATGGATTTTTATGCTGGTGGTCGATCTTCTAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATGTGGCTGAGATGGTGTTGGCGATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGgtaatgaagctagaggtgtgttgttgaggtattgggatcattctttcacc Alignment from Pairagon TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTG--------------------CTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG--------------------------- tgcaatcagacttctggttggataactatgactattgaaatattttacagTACCTGTTGATGGATTTTTATGCTGG-----------------TGGTCGATCTTCTAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATGTGGCTGAGATGGTGTTGGCGATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGGTAATGAAGCTAGAGgtgtgttgttgaggtattgggatcattctttcacc Alignment from Exonerate_protein2genome TACCTGGTGATGGACTACTATGCTGGCGGG---GACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG tgcaatcagacttctggttggataactatgactattgaaatattttacagTACCTGTTGATGGATTTTTATGCTGGTGGTCGATCTTCTAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATGTGGCTGAGATGGTGTTGGCGATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGctatgcccacaggtaatgaagctagaggtgtgttgttgaggtattgggatcattctttcacc Alignment from Exonerate_coding2genome tgcaatcagacttctggttggataactatgactattgaaatattttacagtacctgttgatggatttttatgctggtggtcgatcttctaaaagattactgagctgctttgaagaccgtctcccgcctgaactagctcaaatatatgtggctgagatggtgttggcgattcactccttgcaccagctaggctatgcccacagctatgcccacaggtaatgaagctagaggtgtgttgttgaggtattgggatcattctttcacc Alignment from GeneWise TACCTGGTGATGGACTACTATGCTGGCGGG---GACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCAC------------AG tgcaatcagacttctggttggataactatgactattgaaatattttacagTACCTGTTGATGGATTTTTATGCTGGTGGTCGATCTTCTAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATGTGGCTGAGATGGTGTTGGCGATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGgtaatgaagctagaggtgtgttgttgaggtattgggatcattctttcacc #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCG-GACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCACGACTACATCT-TCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCG-GACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCACGACTACATC-TTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCACGACTACATCTTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCG-GACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCACGACTACATCT-TCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCG-GACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCACGACTACATCT-TCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCACGACTACATCTTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Exonerate_coding2genome aatagtacctcctctacctctcagtactactctgtcactcattaccccaggtggactcatccgttccggtgggaactccacgactacatcttcctgagatcctgcaggctatggaggaaggtaagggccactatggaccacaatttgattggtggtcactgggagtctgtgcctatgagctgctgtttggggaaacacccttttatgctgtatccctggtagagacttatgggaaaatcatgaaccatgaggtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCACGACTACATCTTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCA-AACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagaaACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCACAACA-TCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagaaACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCACAACATCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCACAACATCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCACAACATCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAAC------TACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCA------CAACATCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCACAACATCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Exonerate_coding2genome aatgttcataatttagggcaatgacggacttggtcatttatctactttagaaaccttgaaggacagtgaggcttctcttgcccaagctgatggccctgatgctagaagccctgtcccacaacatcagttacagcaggaaaaggatcgccttcaacaggtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCACAACATCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGA-TTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG acttgctatctggaattggcaaaataattgttttccttttttctacgtaggATCAGTGTTGGGAAAATGGAGGTTCTATGCCATCCTACAGG-AGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtgaggatcaagtacgacaaagccgtgattgcgatcactgacttgtgggt Alignment from CESAR gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG acttgctatctggaattggcaaaataattgttttccttttttctacgtaggATCAGTGTTGGGAAAATGGAGGTTCTATGCCATCCTACAGGAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtgaggatcaagtacgacaaagccgtgattgcgatcactgacttgtgggt Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG acttgctatctggaattggcaaaataattgttttccttttttctacgtagGATCAGTGTTGGGAAAATGGAGGTTCTATGCCATCCTACAGGAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtgaggatcaagtacgacaaagccgtgattgcgatcactgacttgtgggt Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGAT-TGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG acttgctatctggaattggcaaaataattgttttccttttttctacgtagGATCAGTGTTGGGAAAATGGAGGTTCTATGCCATCCTACAGGA-GTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtgaggatcaagtacgacaaagccgtgattgcgatcactgacttgtgggt Alignment from Pairagon GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCC---------GATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG acttgctatctggaattggcaaaataattgttttccttttttctacgtagGATCAGTGTTGGGAAAATGGAGGTTCTATGCCATCCTACAGGAGTG---------AACCAGCAGCTGAGTCGAGAACAGGAGTGGgtgaggatcaagtacgacaaagccgtgattgcgatcactgacttgtgggt Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG acttgctatctggaattggcaaaataattgttttccttttttctacgtagGATCAGTGTTGGGAAAATGGAGGTTCTATGCCATCCTACAGGAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtgaggatcaagtacgacaaagccgtgattgcgatcactgacttgtgggt Alignment from Exonerate_coding2genome acttgctatctggaattggcaaaataattgttttccttttttctacgtaggatcagtgttgggaaaatggaggttctatgccatcctacaggagtgaaccagcagctgagtcgagaacaggagtgggtgaggatcaagtacgacaaagccgtgattgcgatcactgacttgtgggt Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG acttgctatctggaattggcaaaataattgttttccttttttctacgtagGATCAGTGTTGGGAAAATGGAGGTTCTATGCCATCCTACAGGAGTGAACCAGCAGCTGAGTCGAGAACAGGAGTGGgtgaggatcaagtacgacaaagccgtgattgcgatcactgacttgtgggt #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCA-GAGGGCCGCCGCAGTCTGCGCATGGGG gtaacacatatgtagtgctaagtctttcggaggcctgtttgcttccccagAAAGAGTTTGCTAAGGACCCAGGTAATTCAGCTGAAGGTCCAAAGACTGGAGCGGAAGCAGAGCTTAGACCACGAAGGCCAGC-TAGCCTACGCATGGGTgtgccttcataacctactaggctagaactacacaggatttctgcattatc Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGC------AGTCTGCGCATGGGG gtaacacatatgtagtgctaagtctttcggaggcctgtttgcttccccagAAAGAGTTTGCTAAGGACCCAGGTAATTCAGCTGAAGGTCCAAAGACTGGAGCGGAAGCAGAGCTTAGACCA------CGAAGGCCAGCTAGCCTACGCATGGGTgtgccttcataacctactaggctagaactacacaggatttctgcattatc Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG gtaacacatatgtagtgctaagtctttcggaggcctgtttgcttccccagAAAGAGTTTGCTAAGGACCCAGGTAATTCAGCTGAAGGTCCAAAGACTGGAGCGGAAGCAGAGCTTAGACCACGAAGGCCAGCTAGCCTACGCATGGGTgtgccttcataacctactaggctagaactacacaggatttctgcattatc Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCA-GAGGGCCGCCGCAGTCTGCGCATGGGG gtaacacatatgtagtgctaagtctttcggaggcctgtttgcttccccagAAAGAGTTTGCTAAGGACCCAGGTAATTCAGCTGAAGGTCCAAAGACTGGAGCGGAAGCAGAGCTTAGACCACGAAGGCCAGC-TAGCCTACGCATGGGTgtgccttcataacctactaggctagaactacacaggatttctgcattatc Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCA-GAGGGCCGCCGCAGTCTGCGCATGGG--------------------------------------------------- gtaacacatatgtagtgctaagtctttcggaggcctgtttgcttccccagAAAGAGTTTGCTAAGGACCCAGGTAATTCAGCTGAAGGTCCAAAGACTGGAGCGGAAGCAGAGCTTAGACCACGAAGGCCAGC-TAGCCTACGCATGGGTGTGCCTTCATAACCTACTAGGCTAGAACTACACAGGATTTCTGCATTATC Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG gtaacacatatgtagtgctaagtctttcggaggcctgtttgcttccccagAAAGAGTTTGCTAAGGACCCAGGTAATTCAGCTGAAGGTCCAAAGACTGGAGCGGAAGCAGAGCTTAGACCACGAAGGCCAGCTAGCCTACGCATGGGTgtgccttcataacctactaggctagaactacacaggatttctgcattatc Alignment from Exonerate_coding2genome gtaacacatatgtagtgctaagtctttcggaggcctgtttgcttccccagaaagagtttgctaaggacccaggtaattcagctgaaggtccaaagactggagcggaagcagagcttagaccacgaaggccagctagcctacgcatgggtgtgccttcataacctactaggctagaactacacaggatttctgcattatc Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG gtaacacatatgtagtgctaagtctttcggaggcctgtttgcttccccagAAAGAGTTTGCTAAGGACCCAGGTAATTCAGCTGAAGGTCCAAAGACTGGAGCGGAAGCAGAGCTTAGACCACGAAGGCCAGCTAGCCTACGCATGGGTgtgccttcataacctactaggctagaactacacaggatttctgcattatc #### Cdc42bpg_ID1595_25 --> 2 - 0 Original Alignment ccTGTGGCTACTTCTGTCACTCAGCTTGTGCG-TCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGC agtaacctcaacattatttaattcacatatgtcaactttttctctattagcaTGTGGTTATTTCTGT------GCCTGTGCCCTCGC-AACCCCTCCTTGCCCAGTGCCCCCTGAACTTCTTCGCACAGCCTTGGGAGTGCACCCCAAGAAGCGAACAGAGTCAGCCTATGATGGGTTCTTGTCAgtaggctgggggggttctagttatgttttatcgtttcaagGTACGACAGC Alignment from CESAR ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGC agtaacctcaacattatttaattcacatatgtcaactttttctctattagcaTGTGGTTATTTCTGT------GCCTGTGCCCTCGCAACCCCTCCTTGCCCAGTGCCCCCTGAACTTCTTCGCACAGCCTTGGGAGTGCACCCCAAGAAGCGAACAGAGTCAGCCTATGATGGGTTCTTGTCAgtaggctgggggggttctgaagcccctggtccttacacagGTACGACAGC Alignment from Spaln_aa2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGC agtaacctcaacattatttaattcacatatgtcaactttttctctattagCATGTGGTTATTTCTGT------GCCTGTGCCCTCGCAACCCCTCCTTGCCCAGTGCCCCCTGAACTTCTTCGCACAGCCTTGGGAGTGCACCCCAAGAAGCGAACAGAGTCAGCCTATGATGGGTTCTTGTCAgtaggctgggggggttctagttatgttttatcgtttcaagGTACGACAGC Alignment from Spaln_nt2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCG-TCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGC agtaacctcaacattatttaattcacatatgtcaactttttctctattagCATGTGGTTATTTCTGT------GCCTGTGCCCTCGCAA-CCCCTCCTTGCCCAGTGCCCCCTGAACTTCTTCGCACAGCCTTGGGAGTGCACCCCAAGAAGCGAACAGAGTCAGCCTATGATGGGTTCTTGTCAgtaggctgggggggttctagttatgttttatcgtttcaagGTACGACAGC Alignment from Pairagon CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTC----------------------------------------GGTGCCGCGGC agtaacctcaacattatttaattcacatatgtcaactttttctctattagCATGTGGTTATTTCTGT------GCCTGTGCCCTCGCAACCCCTCCTTGCCCAGTGCCCCCTGAACTTCTTCGCACAGCCTTGGGAGTGCACCCCAAGAAGCGAACAGAGTCAGCCTATGATGGGTTCTTGTCAGTAGGCTGGGGGGGTTCTAGTTATGTTTTATCGTTTCAAGGTACGACAGC Alignment from Exonerate_protein2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGC agtaacctcaacattatttaattcacatatgtcaactttttctctattagCATGTGGTTATTTCTGT------GCCTGTGCCCTCGCAACCCCTCCTTGCCCAGTGCCCCCTGAACTTCTTCGCACAGCCTTGGGAGTGCACCCCAAGAAGCGAACAGAGTCAGCCTATGATGGGTTCTTGTCAgtaggctgggggggttctagttatgttttatcgtttcaagGTACGACAGC Alignment from Exonerate_coding2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGC agtaacctcaacattatttaattcacatatgtcaactttttctctattagCATGTGGTTATTTCTGT------GCCTGTGCCCTCGCAACCCCTCCTTGCCCAGTGCCCCCTGAACTTCTTCGCACAGCCTTGGGAGTGCACCCCAAGAAGCGAACAGAGTCAGCCTATGATGGGTTCTTGTCAgtaggctgggggggttctagttatgttttatcgtttcaagGTACGACAGC Alignment from GeneWise CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGC agtaacctcaacattatttaattcacatatgtcaactttttctctattagCATGTGGTTATTTCTGT------GCCTGTGCCCTCGCAACCCCTCCTTGCCCAGTGCCCCCTGAACTTCTTCGCACAGCCTTGGGAGTGCACCCCAAGAAGCGAACAGAGTCAGCCTATGATGGGTTCTTGTCAgtaggctgggggggttctagttatgttttatcgtttcaagGTACGACAGC #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTC-CTCCTGCAGGCCTTGGATCTAag GTTCTTGTCAgtaagatgggggggttctgaagcccctggtccttacacagGTACGACAGCCATCATGTGTTCGCTGGGACTGGCAGCGGGTATATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGACGCTCCTGACCCTCATGGTAGCCTAGCCAGTAGCATTCCTTCTTC-GGCCTTAGATCTAcggtacctttcaccttttgaggacatagtgcgcccaatgtgcatgttggaac Alignment from CESAR CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GTTCTTGTCAgtaggctgggggggttctgaagcccctggtccttacacagGTACGACAGCCATCATGTGTTCGCTGGGACTGGCAGCGGGTATATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGACGCTCCTGACCCTCATGGTAGCCTAGCCAGTAGCATTCCTTCTTCGGCCTTAGATCTAcggtacctttcaccttttgaggacatagtgcgcccaatgtgcatgttggaac Alignment from Spaln_aa2Genome CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GTTCTTGTCAgtaagatgggggggttctgaagcccctggtccttacacagGTACGACAGCCATCATGTGTTCGCTGGGACTGGCAGCGGGTATATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGACGCTCCTGACCCTCATGGTAGCCTAGCCAGTAGCATTCCTTCTTCGGCCTTAGATCTACGgtacctttcaccttttgaggacatagtgcgcccaatgtgcatgttggaac Alignment from Spaln_nt2Genome CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGT-CCTCCTGCAGGCCTTGGATCTAAG GTTCTTGTCAgtaagatgggggggttctgaagcccctggtccttacacagGTACGACAGCCATCATGTGTTCGCTGGGACTGGCAGCGGGTATATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGACGCTCCTGACCCTCATGGTAGCCTAGCCAGTAGCATTCCTTCTTC-GGCCTTAGATCTACGgtacctttcaccttttgaggacatagtgcgcccaatgtgcatgttggaac Alignment from Pairagon CTTCCTGTC----------------------------------------GGTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCA----------GGCCTTGGATCTAAG GTTCTTGTCAGTAAGATGGGGGGGTTCTGAAGCCCCTGGTCCTTACACAGGTACGACAGCCATCATGTGTTCGCTGGGACTGGCAGCGGGTATATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGACGCTCCTGACCCTCATGGTAGCCTAGCCAGTA----------GCATTCCTTCTTCGGCCTTAGATCTACGgtacctttcaccttttgaggacatagtgcgcccaatgtgcatgttggaac Alignment from Exonerate_protein2genome CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GTTCTTGTCAgtaagatgggggggttctgaagcccctggtccttacacagGTACGACAGCCATCATGTGTTCGCTGGGACTGGCAGCGGGTATATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGACGCTCCTGACCCTCATGGTAGCCTAGCCAGTAGCATTCCTTCTTCGGCCTTAGATCTACGgtacctttcaccttttgaggacatagtgcgcccaatgtgcatgttggaac Alignment from Exonerate_coding2genome CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GTTCTTGTCAgtaagatgggggggttctgaagcccctggtccttacacagGTACGACAGCCATCATGTGTTCGCTGGGACTGGCAGCGGGTATATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGACGCTCCTGACCCTCATGGTAGCCTAGCCAGTAGCATTCCTTCTTCGGCCTTAGATCTACGgtacctttcaccttttgaggacatagtgcgcccaatgtgcatgttggaac Alignment from GeneWise CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GTTCTTGTCAgtaagatgggggggttctgaagcccctggtccttacacagGTACGACAGCCATCATGTGTTCGCTGGGACTGGCAGCGGGTATATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGACGCTCCTGACCCTCATGGTAGCCTAGCCAGTAGCATTCCTTCTTCGGCCTTAGATCTACGgtacctttcaccttttgaggacatagtgcgcccaatgtgcatgttggaac #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTC-AACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG acaccaataactaattgcagctatttattggtctttccgttctcttgcaggGAGATGCTGAAAGACCCCTTTGTGCGGTTCAAATTTATTCCACCACCAACCAACTTACATCCACCTGG-CCATGTGGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACACGTgtactgctggagtaggagatcacctaacctgtcacaaagcttcaatcatg Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG acaccaataactaattgcagctatttattggtctttccgttctcttgcaggGAGATGCTGAAAGACCCCTTTGTGCGGTTCAAATTTATTCCACCACCAACCAACTTACATCCACCTGGCCATGTGGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACACGTgtactgctggagtaggagatcacctaacctgtcacaaagcttcaatcatg Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG acaccaataactaattgcagctatttattggtctttccgttctcttgcagGGAGATGCTGAAAGACCCCTTTGTGCGGTTCAAATTTATTCCACCACCAACCAACTTACATCCACCTGGCCATGTGGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACACGTgtactgctggagtaggagatcacctaacctgtcacaaagcttcaatcatg Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTT-CAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG acaccaataactaattgcagctatttattggtctttccgttctcttgcagGGAGATGCTGAAAGACCCCTTTGTGCGGTTCAAATTTATTCCACCACCAACCAACTTACATCCACCTGG-CCATGTGGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACACGTgtactgctggagtaggagatcacctaacctgtcacaaagcttcaatcatg Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTT-CAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG acaccaataactaattgcagctatttattggtctttccgttctcttgcagGGAGATGCTGAAAGACCCCTTTGTGCGGTTCAAATTTATTCCACCACCAACCAACTTACATCCACCTGGC-CATGTGGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACACGTgtactgctggagtaggagatcacctaacctgtcacaaagcttcaatcatg Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG acaccaataactaattgcagctatttattggtctttccgttctcttgcagGGAGATGCTGAAAGACCCCTTTGTGCGGTTCAAATTTATTCCACCACCAACCAACTTACATCCACCTGGCCATGTGGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACACGTgtactgctggagtaggagatcacctaacctgtcacaaagcttcaatcatg Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG acaccaataactaattgcagctatttattggtctttccgttctcttgcagGGAGATGCTGAAAGACCCCTTTGTGCGGTTCAAATTTATTCCACCACCAACCAACTTACATCCACCTGGCCATGTGGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACACGTgtactgctggagtaggagatcacctaacctgtcacaaagcttcaatcatg Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG acaccaataactaattgcagctatttattggtctttccgttctcttgcagGGAGATGCTGAAAGACCCCTTTGTGCGGTTCAAATTTATTCCACCACCAACCAACTTACATCCACCTGGCCATGTGGGGCATACAGAGGGGAGGTCCAACACTAGGGATGGGACACGTgtactgctggagtaggagatcacctaacctgtcacaaagcttcaatcatg #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGAT-GGTCTCCCTGGAGAAACAGACCCAt aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCCGTC-ACCAGGACAAACAGACCCCtgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCCGTCACCAGGACAAACAGACCCCtgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCCGTCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCCGTCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCCGTCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCCGTCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCCGTCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCCGTCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta #### Cdca5_ID1429_3 --> 0 - 0 Original Alignment ACAACTCCAGCGGTCCCAGTCAGA-AAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cccactatcccaattcccaaacgacactctatatgcttcttctgttccagATGACTCCCACAGTGCCAGTTAGACAAAGCTA-CATCTTGAAGAAGATAGTTGCACATGCAGTTGAAgtgaagggggtggtggggcagagaattgggcactgagatgtccaaattca Alignment from CESAR ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cccactatcccaattcccaaacgacactctatatgcttcttctgttccagATGACTCCCACAGTGCCAGTTAGACAAAGCTACATCTTGAAGAAGATAGTTGCACATGCAGTTGAAgtgaagggggtggtggggcagagaattgggcactgagatgtccaaattca Alignment from Spaln_aa2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cccactatcccaattcccaaacgacactctatatgcttcttctgttccagATGACTCCCACAGTGCCAGTTAGACAAAGCTACATCTTGAAGAAGATAGTTGCACATGCAGTTGAAgtgaagggggtggtggggcagagaattgggcactgagatgtccaaattca Alignment from Spaln_nt2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cccactatcccaattcccaaacgacactctatatgcttcttctgttccagATGACTCCCACAGTGCCAGTTAGACAAAGCTACATCTTGAAGAAGATAGTTGCACATGCAGTTGAAgtgaagggggtggtggggcagagaattgggcactgagatgtccaaattca Alignment from Pairagon ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cccactatcccaattcccaaacgacactctatatgcttcttctgttccagATGACTCCCACAGTGCCAGTTAGACAAAGCTACATCTTGAAGAAGATAGTTGCACATGCAGTTGAAgtgaagggggtggtggggcagagaattgggcactgagatgtccaaattca Alignment from Exonerate_protein2genome AGGACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cccactatcccaattcccaaacgacactctatatgcttcttctgttcCAGATGACTCCCACAGTGCCAGTTAGACAAAGCTACATCTTGAAGAAGATAGTTGCACATGCAGTTGAAgtgaagggggtggtggggcagagaattgggcactgagatgtccaaattca Alignment from Exonerate_coding2genome cccactatcccaattcccaaacgacactctatatgcttcttctgttccagatgactcccacagtgccagttagacaaagctacatcttgaagaagatagttgcacatgcagttgaagtgaagggggtggtggggcagagaattgggcactgagatgtccaaattca Alignment from GeneWise ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cccactatcccaattcccaaacgacactctatatgcttcttctgttccagATGACTCCCACAGTGCCAGTTAGACAAAGCTACATCTTGAAGAAGATAGTTGCACATGCAGTTGAAgtgaagggggtggtggggcagagaattgggcactgagatgtccaaattca #### Cdk2ap2_ID298_2 --> 2 - 0 Original Alignment ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCT-GCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgcaatgtaatcaccaacacctccacttccagctGGTAGTGTCCCATTGCCATCAGGCTCGGTACCAGGGGCTCGCTG-CCCTTTCAGACCA---TTCAATGACTTTGGTCCACCCTCTATGGGTTATGTTAAAgtttgtttgataaaagagttactcaagcatgtggagcccaacccctattg Alignment from CESAR ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgcaatgtaatcaccaacacctccacttccagctGGTAGTGTCCCATTGCCATCAGGCTCGGTACCAGGGGCTCGCTGCCCTTTCAGACCA---TTCAATGACTTTGGTCCACCCTCTATGGGTTATGTTAAAgtttgtttgataaaagagttactcaagcatgtggagcccaacccctattg Alignment from Spaln_aa2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgcaatgtaatcaccaacacctccacttccagCTGGTAGTGTCCCATTGCCATCAGGCTCGGTACCAGGGGCTCGCTGCCCTTTCAGACCA---TTCAATGACTTTGGTCCACCCTCTATGGGTTATGTTAAAgtttgtttgataaaagagttactcaagcatgtggagcccaacccctattg Alignment from Spaln_nt2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgcaatgtaatcaccaacacctccacttccagCTGGTAGTGTCCCATTGCCATCAGGCTCGGTACCAGGGGCTCGCTGCCCTTTCAGACC---ATTCAATGACTTTGGTCCACCCTCTATGGGTTATGTTAAAgtttgtttgataaaagagttactcaagcatgtggagcccaacccctattg Alignment from Pairagon CCTACAGCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGT---------------------------------------------------------- atgcccaatctaaaagtctgcaatgtaatcaccaacacctccacttccag-------CTGGTAGTGTCCCATTGCCATCAGGCTCGGTACCAGGGGCTCGCTGCCCTTTCAGACC---ATTCAATGACTTTGGTCCACCCTCTATGGGTTATGTTAAAGTTTGTTTGATAAAAGAGTTACTCAAGCATGTGGAGCCCAACCCCTATTG Alignment from Exonerate_protein2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgcaatgtaatcaccaacacctccacttccagCTGGTAGTGTCCCATTGCCATCAGGCTCGGTACCAGGGGCTCGCTGCCCTTTCAGACCA---TTCAATGACTTTGGTCCACCCTCTATGGGTTATGTTAAAgtttgtttgataaaagagttactcaagcatgtggagcccaacccctattg Alignment from Exonerate_coding2genome atgcccaatctaaaagtctgcaatgtaatcaccaacacctccacttccagctggtagtgtcccattgccatcaggctcggtaccaggggctcgctgccctttcagaccattcaatgactttggtccaccctctatgggttatgttaaagtttgtttgataaaagagttactcaagcatgtggagcccaacccctattg Alignment from GeneWise CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG atgcccaatctaaaagtctgcaatgtaatcaccaacacctccacttccagCTGGTAGTGTCCCATTGCCATCAGGCTCGGTACCAGGGGCTCGCTGCCCTTTCAGACCA---TTCAATGACTTTGGTCCACCCTCTATGGGTTATGTTAAAgtttgtttgataaaagagttactcaagcatgtggagcccaacccctattg #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gcccttttggccatctcgataagtagattgtgcgacccttctcctgacagGGATTGAGCAAATCAACCTCTCCTGGTGC-CTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtaatgtgatgtattttataactattcttggtgcctctcatatgcatcca Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gcccttttggccatctcgataagtagattgtgcgacccttctcctgacagGGATTGAGCAAATCAACCTCTCCTGGTGCCTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtaatgtgatgtattttataactattcttggtgcctctcatatgcatcca Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gcccttttggccatctcgataagtagattgtgcgacccttctcctgacagGGATTGAGCAAATCAACCTCTCCTGGTGCCTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtaatgtgatgtattttataactattcttggtgcctctcatatgcatcca Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gcccttttggccatctcgataagtagattgtgcgacccttctcctgacagGGATTGAGCAAATCAACCTCTCCTGGTGCCTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtaatgtgatgtattttataactattcttggtgcctctcatatgcatcca Alignment from Pairagon GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gcccttttggccatctcgataagtagattgtgcgacccttctcctgacagGGATTGAGCAAATCAACCTCTCCTGGTGC-CTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtaatgtgatgtattttataactattcttggtgcctctcatatgcatcca Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gcccttttggccatctcgataagtagattgtgcgacccttctcctgacagGGATTGAGCAAATCAACCTCTCCTGGTGCCTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtaatgtgatgtattttataactattcttggtgcctctcatatgcatcca Alignment from Exonerate_coding2genome gcccttttggccatctcgataagtagattgtgcgacccttctcctgacagggattgagcaaatcaacctctcctggtgccttgtctcttgcaaattgcccaattggagatggagggttagaaagtaatgtgatgtattttataactattcttggtgcctctcatatgcatcca Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gcccttttggccatctcgataagtagattgtgcgacccttctcctgacagGGATTGAGCAAATCAACCTCTCCTGGTGCCTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtaatgtgatgtattttataactattcttggtgcctctcatatgcatcca #### Chuk_ID8919_9 --> 1 - 0 Original Alignment tTTAATAGTAGAGCCAATG-GAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaatgtggcacatgggatttctgtctctttggcattctagtCTAATAGTAGAACCAATGCGAAAGCTGGC-CCAATTGATGCTAAACTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCTAGGTGTTTTGCCCTAATGAAACAGATCCTTAATCTAAAGgtaagttacttgggtgcagcatatcagtgcaagtagaatgacactgacag Alignment from CESAR tTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaatgtggcacatgggatttctgtctctttggcattctagtCTAATAGTAGAACCAATGCGAAAGCTGGCCCAATTGATGCTAAACTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCTAGGTGTTTTGCCCTAATGAAACAGATCCTTAATCTAAAGgtaagttacttgggtgcagcatatcagtgcaagtagaatgacactgacag Alignment from Spaln_aa2Genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaatgtggcacatgggatttctgtctctttggcattctagTCTAATAGTAGAACCAATGCGAAAGCTGGCCCAATTGATGCTAAACTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCTAGGTGTTTTGCCCTAATGAAACAGATCCTTAATCTAAAGgtaagttacttgggtgcagcatatcagtgcaagtagaatgacactgacag Alignment from Spaln_nt2Genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaatgtggcacatgggatttctgtctctttggcattctagTCTAATAGTAGAACCAATGCGAAAGCTGGCCCAATTGATGCTAAACTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCTAGGTGTTTTGCCCTAATGAAACAGATCCTTAATCTAAAGgtaagttacttgggtgcagcatatcagtgcaagtagaatgacactgacag Alignment from Pairagon TTTAATAGTAGAGCCAATG-GAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaatgtggcacatgggatttctgtctctttggcattctagTCTAATAGTAGAACCAATGCGAAAGCTGGC-CCAATTGATGCTAAACTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCTAGGTGTTTTGCCCTAATGAAACAGATCCTTAATCTAAAGgtaagttacttgggtgcagcatatcagtgcaagtagaatgacactgacag Alignment from Exonerate_protein2genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaatgtggcacatgggatttctgtctctttggcattctagTCTAATAGTAGAACCAATGCGAAAGCTGGCCCAATTGATGCTAAACTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCTAGGTGTTTTGCCCTAATGAAACAGATCCTTAATCTAAAGgtaagttacttgggtgcagcatatcagtgcaagtagaatgacactgacag Alignment from Exonerate_coding2genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaatgtggcacatgggatttctgtctctttggcattctagTCTAATAGTAGAACCAATGCGAAAGCTGGCCCAATTGATGCTAAACTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCTAGGTGTTTTGCCCTAATGAAACAGATCCTTAATCTAAAGgtaagttacttgggtgcagcatatcagtgcaagtagaatgacactgacag Alignment from GeneWise TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaatgtggcacatgggatttctgtctctttggcattctagTCTAATAGTAGAACCAATGCGAAAGCTGGCCCAATTGATGCTAAACTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCTAGGTGTTTTGCCCTAATGAAACAGATCCTTAATCTAAAGgtaagttacttgggtgcagcatatcagtgcaagtagaatgacactgacag #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttctcaaaagtctaagctttatagttccaatttttaactaccttttttagGCACCAGACCTCTTTGAAAATAAGCCCATACA-AGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTTTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcagtgctatttgttgttggggagaactcccagttacatgaggta Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttctcaaaagtctaagctttatagttccaatttttaactaccttttttagGCACCAGACCTCTTTGAAAATAAGCCCATACAAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTTTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcagtgctatttgttgttggggagaactcccagttacatgaggta Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttctcaaaagtctaagctttatagttccaatttttaactaccttttttagGCACCAGACCTCTTTGAAAATAAGCCCATACAAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTTTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagtgctatttgttgttggggagaactcccagttacatgaggta Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttctcaaaagtctaagctttatagttccaatttttaactaccttttttagGCACCAGACCTCTTTGAAAATAAGCCCATACAAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTTTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagtgctatttgttgttggggagaactcccagttacatgaggta Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttctcaaaagtctaagctttatagttccaatttttaactaccttttttagGCACCAGACCTCTTTGAAAATAAGCCCATACA-AGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTTTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagtgctatttgttgttggggagaactcccagttacatgaggta Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttctcaaaagtctaagctttatagttccaatttttaactaccttttttagGCACCAGACCTCTTTGAAAATAAGCCCATACAAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTTTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagtgctatttgttgttggggagaactcccagttacatgaggta Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttctcaaaagtctaagctttatagttccaatttttaactaccttttttagGCACCAGACCTCTTTGAAAATAAGCCCATACAAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTTTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagtgctatttgttgttggggagaactcccagttacatgaggta Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttctcaaaagtctaagctttatagttccaatttttaactaccttttttagGCACCAGACCTCTTTGAAAATAAGCCCATACAAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTTTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagtgctatttgttgttggggagaactcccagttacatgaggta #### Chuk_ID8922_6 --> 0 - 0 Original Alignment ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGAT-CAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG tcacaagtcttgtggaacttgatgacattccgctgtttgttttcttacagACAGTGCATAAAATAATTGATCTGGGGTATGCCAAAGATGTTGATCCAAGGAAGTC-TTGTTCAACTTTTGTAGGAACATTGAAATACTTGgtcagtaaatgacatgttagttctgattctgttacttcgttggtctttca Alignment from CESAR ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG tcacaagtcttgtggaacttgatgacattccgctgtttgttttcttacagACAGTGCATAAAATAATTGATCTGGGGTATGCCAAAGATGTTGATCCAAGGAAGTCTTGTTCAACTTTTGTAGGAACATTGAAATACTTGgtcagtaaatgacatgttagttctgattctgttacttcgttggtctttca Alignment from Spaln_aa2Genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG tcacaagtcttgtggaacttgatgacattccgctgtttgttttcttacagACAGTGCATAAAATAATTGATCTGGGGTATGCCAAAGATGTTGATCCAAGGAAGTCTTGTTCAACTTTTGTAGGAACATTGAAATACTTGgtcagtaaatgacatgttagttctgattctgttacttcgttggtctttca Alignment from Spaln_nt2Genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG tcacaagtcttgtggaacttgatgacattccgctgtttgttttcttacagACAGTGCATAAAATAATTGATCTGGGGTATGCCAAAGATGTTGATCCAAGGAAGTCTTGTTCAACTTTTGTAGGAACATTGAAATACTTGgtcagtaaatgacatgttagttctgattctgttacttcgttggtctttca Alignment from Pairagon ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGAT-CAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG tcacaagtcttgtggaacttgatgacattccgctgtttgttttcttacagACAGTGCATAAAATAATTGATCTGGGGTATGCCAAAGATGTTGATCCAAGGAAGTCT-TGTTCAACTTTTGTAGGAACATTGAAATACTTGgtcagtaaatgacatgttagttctgattctgttacttcgttggtctttca Alignment from Exonerate_protein2genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG tcacaagtcttgtggaacttgatgacattccgctgtttgttttcttacagACAGTGCATAAAATAATTGATCTGGGGTATGCCAAAGATGTTGATCCAAGGAAGTCTTGTTCAACTTTTGTAGGAACATTGAAATACTTGgtcagtaaatgacatgttagttctgattctgttacttcgttggtctttca Alignment from Exonerate_coding2genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG tcacaagtcttgtggaacttgatgacattccgctgtttgttttcttacagACAGTGCATAAAATAATTGATCTGGGGTATGCCAAAGATGTTGATCCAAGGAAGTCTTGTTCAACTTTTGTAGGAACATTGAAATACTTGgtcagtaaatgacatgttagttctgattctgttacttcgttggtctttca Alignment from GeneWise ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG tcacaagtcttgtggaacttgatgacattccgctgtttgttttcttacagACAGTGCATAAAATAATTGATCTGGGGTATGCCAAAGATGTTGATCCAAGGAAGTCTTGTTCAACTTTTGTAGGAACATTGAAATACTTGgtcagtaaatgacatgttagttctgattctgttacttcgttggtctttca #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTC-TCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aaccatgtcctgcctaatgctgttttgtccctttcttcttctgcccttagccACAAGTTTGTCATCCACCCCAGGCCCTGCAGGTCCATCGGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTCTCAACTG-CTCCTCTACATATGCTGCAGAGAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAagtatgaatcgtggtcactagtgcgttcggccagacacaagtgaaactact Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aaccatgtcctgcctaatgctgttttgtccctttcttcttctgcccttagccACAAGTTTGTCATCCACCCCAGGCCCTGCAGGTCCATCGGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTCTCAACTGCTCCTCTACATATGCTGCAGAGAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAagtatgaatcgtggtcactagtgcgttcggccagacacaagtgaaactact Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaccatgtcctgcctaatgctgttttgtccctttcttcttctgcccttagCCACAAGTTTGTCATCCACCCCAGGCCCTGCAGGTCCATCGGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTCTCAACTGCTCCTCTACATATGCTGCAGAGAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtatgaatcgtggtcactagtgcgttcggccagacacaagtgaaactact Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGT-CTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaccatgtcctgcctaatgctgttttgtccctttcttcttctgcccttagCCACAAGTTTGTCATCCACCCCAGGCCCTGCAGGTCCATCGGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTCTCAACTGCTC-CTCTACATATGCTGCAGAGAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtatgaatcgtggtcactagtgcgttcggccagacacaagtgaaactact Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTG-TCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaccatgtcctgcctaatgctgttttgtccctttcttcttctgcccttagCCACAAGTTTGTCATCCACCCCAGGCCCTGCAGGTCCATCGGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTCTCAACTGCTCC-TCTACATATGCTGCAGAGAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtatgaatcgtggtcactagtgcgttcggccagacacaagtgaaactact Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaccatgtcctgcctaatgctgttttgtccctttcttcttctgcccttagCCACAAGTTTGTCATCCACCCCAGGCCCTGCAGGTCCATCGGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTCTCAACTGCTCCTCTACATATGCTGCAGAGAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtatgaatcgtggtcactagtgcgttcggccagacacaagtgaaactact Alignment from Exonerate_coding2genome aaccatgtcctgcctaatgctgttttgtccctttcttcttctgcccttagccacaagtttgtcatccaccccaggccctgcaggtccatcggggccaccagctccccgagggccccctggggttctcaactgctcctctacatatgctgcagagaacagtgataacttccgatgtgagctgattagttacctcacaagtatgaatcgtggtcactagtgcgttcggccagacacaagtgaaactact Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaccatgtcctgcctaatgctgttttgtccctttcttcttctgcccttagCCACAAGTTTGTCATCCACCCCAGGCCCTGCAGGTCCATCGGGGCCACCAGCTCCCCGAGGGCCCCCTGGGGTTCTCAACTGCTCCTCTACATATGCTGCAGAGAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtatgaatcgtggtcactagtgcgttcggccagacacaagtgaaactact #### Col17a1_ID10282_40 --> 2 - 1 Original Alignment aaACCTTCTTCACTGGCCCTCCAGGTCCACCC-GGCCCCCCAGGTCCCAAGGGAGACCAAg agccaatgttaagccctgagcaacctgcttttcctgtttcttctgtttagtaACATTCTTTAGGGGCCCTCCAGGTCCACCTCGGCCCTC-AGGTCCAAAAGGGGACCAAggtgagtaggtagtgcaaaaactgccaagtgtgagcactagtatgagacta Alignment from CESAR aaACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg agccaatgttaagccctgagcaacctgcttttcctgtttcttctgtttagtaACATTCTTTAGGGGCCCTCCAGGTCCACCTCGGCCCTCAGGTCCAAAAGGGGACCAAggtgagtaggtagtgcaaaaactgccaagtgtgagcactagtatgagacta Alignment from Spaln_aa2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agccaatgttaagccctgagcaacctgcttttcctgtttcttctgtttagTAACATTCTTTAGGGGCCCTCCAGGTCCACCTCGGCCCTCAGGTCCAAAAGGGGACCAAGgtgagtaggtagtgcaaaaactgccaagtgtgagcactagtatgagacta Alignment from Spaln_nt2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agccaatgttaagccctgagcaacctgcttttcctgtttcttctgtttagTAACATTCTTTAGGGGCCCTCCAGGTCCACCTCGGCCCTCAGGTCCAAAAGGGGACCAAGgtgagtaggtagtgcaaaaactgccaagtgtgagcactagtatgagacta Alignment from Pairagon AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agccaatgttaagccctgagcaacctgcttttcctgtttcttctgtttagTAACATTCTTTAGGGGCCCTCCAGGTCCACCTCGGCCCTCAGGTCCAAAAGGGGACCAAGgtgagtaggtagtgcaaaaactgccaagtgtgagcactagtatgagacta Alignment from Exonerate_protein2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agccaatgttaagccctgagcaacctgcttttcctgtttcttctgtttagTAACATTCTTTAGGGGCCCTCCAGGTCCACCTCGGCCCTCAGGTCCAAAAGGGGACCAAGgtgagtaggtagtgcaaaaactgccaagtgtgagcactagtatgagacta Alignment from Exonerate_coding2genome agccaatgttaagccctgagcaacctgcttttcctgtttcttctgtttagtaacattctttaggggccctccaggtccacctcggccctcaggtccaaaaggggaccaaggtgagtaggtagtgcaaaaactgccaagtgtgagcactagtatgagacta Alignment from GeneWise AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG agccaatgttaagccctgagcaacctgcttttcctgtttcttctgtttagTAACATTCTTTAGGGGCCCTCCAGGTCCACCTCGGCCCTCAGGTCCAAAAGGGGACCAAGgtgagtaggtagtgcaaaaactgccaagtgtgagcactagtatgagacta #### Col17a1_ID10283_39 --> 2 - 1 Original Alignment ggGAAGGCGTACCAGGC-CCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg attgtcaatagtgagggtaatatgacattgaactaacatggtttttacaggaGAGGGAGTGCCAGGTCCCAC-TGGGCCTCCAGGATCTTTTTTGACTGATTCTggtaagcatgtccatcccctctgctctgatttggccagaaaaccatgcata Alignment from CESAR ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg attgtcaatagtgagggtaatatgacattgaactaacatggtttttacaggaGAGGGAGTGCCAGGTCCCACTGGGCCTCCAGGATCTTTTTTGACTGATTCTggtaagcatgtccatcccctctgctctgatttggccagaaaaccatgcata Alignment from Spaln_aa2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacattgaactaacatggtttttacagGAGAGGGAGTGCCAGGTCCCACTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagcatgtccatcccctctgctctgatttggccagaaaaccatgcata Alignment from Spaln_nt2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacattgaactaacatggtttttacagGAGAGGGAGTGCCAGGTCCCACTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagcatgtccatcccctctgctctgatttggccagaaaaccatgcata Alignment from Pairagon GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacattgaactaacatggtttttacagGAGAGGGAGTGCCAGGTCCCACTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagcatgtccatcccctctgctctgatttggccagaaaaccatgcata Alignment from Exonerate_protein2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacattgaactaacatggtttttacagGAGAGGGAGTGCCAGGTCCCACTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagcatgtccatcccctctgctctgatttggccagaaaaccatgcata Alignment from Exonerate_coding2genome attgtcaatagtgagggtaatatgacattgaactaacatggtttttacaggagagggagtgccaggtcccactgggcctccaggatcttttttgactgattctggtaagcatgtccatcccctctgctctgatttggccagaaaaccatgcata Alignment from GeneWise GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG attgtcaatagtgagggtaatatgacattgaactaacatggtttttacagGAGAGGGAGTGCCAGGTCCCACTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagcatgtccatcccctctgctctgatttggccagaaaaccatgcata #### Col17a1_ID10284_38 --> 2 - 1 Original Alignment ggCCTTCCATCCCAGGC-CCGCCAGGACCCAGAGGTCCACCAg acgatagtaatggagggagattcacaagtttgctttgtggtcacgtgcagggCCTTCTACCCCAGGGCCCACCCGGAC-CCAAAGTCCACCAggtgactgattgaaagggatgtgaggattaaggccatgtccaacaggaggt Alignment from CESAR ggCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAg acgatagtaatggagggagattcacaagtttgctttgtggtcacgtgcagggCCTTCTACCCCAGGGCCCACCCGGACCCAAAGTCCACCAggtgactgattgaaagggatgtgaggattaaggccatgtccaacaggaggt Alignment from Spaln_aa2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG acgatagtaatggagggagattcacaagtttgctttgtggtcacgtgcagGGCCTTCTACCCCAGGGCCCACCCGGACCCAAAGTCCACCAGgtgactgattgaaagggatgtgaggattaaggccatgtccaacaggaggt Alignment from Spaln_nt2Genome GGCCTTCCATCCCAGG-CCCGCCAGGACCCAGAGGTCCACCAG acgatagtaatggagggagattcacaagtttgctttgtggtcacgtgcagGGCCTTCTACCCCAGGGCCCACCCGGACCCA-AAGTCCACCAGgtgactgattgaaagggatgtgaggattaaggccatgtccaacaggaggt Alignment from Pairagon GGCCTTCCATCCCA-GGCCCGCCAGGACCCAGAGGTCCACCAG acgatagtaatggagggagattcacaagtttgctttgtggtcacgtgcagGGCCTTCTACCCCAGGGCCCACCCGGACCCA-AAGTCCACCAGgtgactgattgaaagggatgtgaggattaaggccatgtccaacaggaggt Alignment from Exonerate_protein2genome acgatagtaatggagggagattcacaagtttgctttgtggtcacgtgcagggccttctaccccagggcccacccggacccaaagtccaccaggtgactgattgaaagggatgtgaggattaaggccatgtccaacaggaggt Alignment from Exonerate_coding2genome acgatagtaatggagggagattcacaagtttgctttgtggtcacgtgcagggccttctaccccagggcccacccggacccaaagtccaccaggtgactgattgaaagggatgtgaggattaaggccatgtccaacaggaggt Alignment from GeneWise GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG acgatagtaatggagggagattcacaagtttgctttgtggtcacgtgcagGGCCTTCTACCCCAGGGCCCACCCGGACCCAAAGTCCACCAGgtgactgattgaaagggatgtgaggattaaggccatgtccaacaggaggt #### Col17a1_ID10287_35 --> 2 - 1 Original Alignment gtCCAGCTGGCCCTGCT-GGTCTCCCAGGACAACAAg caaatacacatggatggcagaactgtttacatctctcccttttcttccaggtCCGGCTAGCCCTGGTCGGTC-ACCAGGAGAGCAAggtgagtatctgcatgactgacagtactaggctctgaggagtgacaagctt Alignment from CESAR gtCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAg caaatacacatggatggcagaactgtttacatctctcccttttcttccaggtCCGGCTAGCCCTGGTCGGTCACCAGGAGAGCAAggtgagtatctgcatgactgacagtactaggctctgaggagtgacaagctt Alignment from Spaln_aa2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG caaatacacatggatggcagaactgtttacatctctcccttttcttccagGTCCGGCTAGCCCTGGTCGGTCACCAGGAGAGCAAGgtgagtatctgcatgactgacagtactaggctctgaggagtgacaagctt Alignment from Spaln_nt2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG caaatacacatggatggcagaactgtttacatctctcccttttcttccagGTCCGGCTAGCCCTGGTCGGTCACCAGGAGAGCAAGgtgagtatctgcatgactgacagtactaggctctgaggagtgacaagctt Alignment from Pairagon GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG caaatacacatggatggcagaactgtttacatctctcccttttcttccagGTCCGGCTAGCCCTGGTCGGTCACCAGGAGAGCAAGgtgagtatctgcatgactgacagtactaggctctgaggagtgacaagctt Alignment from Exonerate_protein2genome caaatacacatggatggcagaactgtttacatctctcccttttcttccaggtccggctagccctggtcggtcaccaggagagcaaggtgagtatctgcatgactgacagtactaggctctgaggagtgacaagctt Alignment from Exonerate_coding2genome caaatacacatggatggcagaactgtttacatctctcccttttcttccaggtccggctagccctggtcggtcaccaggagagcaaggtgagtatctgcatgactgacagtactaggctctgaggagtgacaagctt Alignment from GeneWise caaatacacatggatggcagaactgtttacatctctcccttttcttccaggtccggctagccctggtcggtcaccaggagagcaaggtgagtatctgcatgactgacagtactaggctctgaggagtgacaagctt #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACT-GTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagaaGGATCCTCAACCACCACTCGTCCCTG-GACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTagtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from CESAR agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagaaGGATCCTCAACCACCACTCGTCCCTGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTagtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagAAGGATCCTCAACCACCACTCGTCCCTGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagAAGGATCCTCAACCACCACTCGTCCCTGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Pairagon AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagAAGGATCCTCAACCACCACTCGTCCCTGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagAAGGATCCTCAACCACCACTCGTCCCTGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Exonerate_coding2genome cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagaaggatcctcaaccaccactcgtccctggactcctgggccttcaggtgccatggatcctcctgggcctccagggacgcttagtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from GeneWise GCGAACCCGGCGCTCCCGGCAGAGTCATGACTTCA---------GAGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagTTGAGGATAGTGTAACATGGCATATTCTCATCACCCTCTCTTTAGAAGGATCCTCAACCACCACTCGTCCCTGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGAC-GTGGGACTTCCTGGTGTCAAAg catataggaaaggggtatcattgctgagtatttttctttctggtgtgtaggtGCTGTTGGAACCCAGGGACTTCGGGGTGATCGTGG-ATTGCCTGGTGTCAAAggtaagacaggtagtgaaaggtgagggcttatttgcaaaggcattctaagc Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg catataggaaaggggtatcattgctgagtatttttctttctggtgtgtaggtGCTGTTGGAACCCAGGGACTTCGGGGTGATCGTGGATTGCCTGGTGTCAAAggtaagacaggtagtgaaaggtgagggcttatttgcaaaggcattctaagc Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG catataggaaaggggtatcattgctgagtatttttctttctggtgtgtagGTGCTGTTGGAACCCAGGGACTTCGGGGTGATCGTGGATTGCCTGGTGTCAAAGgtaagacaggtagtgaaaggtgagggcttatttgcaaaggcattctaagc Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG catataggaaaggggtatcattgctgagtatttttctttctggtgtgtagGTGCTGTTGGAACCCAGGGACTTCGGGGTGATCGTGGATTGCCTGGTGTCAAAGgtaagacaggtagtgaaaggtgagggcttatttgcaaaggcattctaagc Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG catataggaaaggggtatcattgctgagtatttttctttctggtgtgtagGTGCTGTTGGAACCCAGGGACTTCGGGGTGATCGTGGATTGCCTGGTGTCAAAGgtaagacaggtagtgaaaggtgagggcttatttgcaaaggcattctaagc Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGG catataggaaaggggtatcattgctgagtatttttctttctggtgtgtagGTGCTGTTGGAACCCAGGGACTTCGGGGTGATCGTGGATTGCCTGGTGTCAAAGGTAAGACAGGTAGTGAAAGgtgagggcttatttgcaaaggcattctaagc Alignment from Exonerate_coding2genome CAGGTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG catataggaaaggggtatcattgctgagtatttttctttctggtgtgTAGGTGCTGTTGGAACCCAGGGACTTCGGGGTGATCGTGGATTGCCTGGTGTCAAAGgtaagacaggtagtgaaaggtgagggcttatttgcaaaggcattctaagc Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG catataggaaaggggtatcattgctgagtatttttctttctggtgtgtagGTGCTGTTGGAACCCAGGGACTTCGGGGTGATCGTGGATTGCCTGGTGTCAAAGgtaagacaggtagtgaaaggtgagggcttatttgcaaaggcattctaagc #### Col17a1_ID10300_22 --> 2 - 1 Original Alignment gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGA-CTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg taactatctgtactggtgactctttcttaccccatctcttctccccaaaggaGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGACTTAGCAGGTC-CATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from CESAR gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg taactatctgtactggtgactctttcttaccccatctcttctccccaaaggaGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGACTTAGCAGGTCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Spaln_aa2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGACTTAGCAGGTCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Spaln_nt2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGACTTAGCAGGTCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Pairagon GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGAC-TAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGACTTAGCAGG-TCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Exonerate_protein2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGACTTAGCAGGTCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Exonerate_coding2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGACTTAGCAGGTCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from GeneWise GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGACTTAGCAGGTCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAG-GAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagcaTCTTTCTCAGAAGATACATTGAAAAAGCGAGAAACAGG-AGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATggtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagcaTCTTTCTCAGAAGATACATTGAAAAAGCGAGAAACAGGAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATggtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGCGAGAAACAGGAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAG-GAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGCGAGAAACAGG-AGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAG-GAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGCGAGAAACAGGA-GTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGCGAGAAACAGGAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATGGAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGCGAGAAACAGGAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGGTAGGGTCTGCACACCAATTGCTTCTTACATAATCGTATCTAgtacactc Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGCGAGAAACAGGAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGAT-GAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATCGAAGTCA-TGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATCGAAGTCATGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATCGAAGTCATGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATCGAAGTCATGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGAT-GAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATCGAAGTCAT-GCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATCGAAGTCATGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATCGAAGTCATGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTG-TACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagggTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGCTACCGTTTGG-CAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttggtctctaatttcttaatgaagGA Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagggTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGCTACCGTTTGGCAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttatggcaccttctttctcttcagGA Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGCTACCGTTTGGCAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttggtctctaatttcttaatgaagGA Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGCTACCGTTTGGCAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttggtctctaatttcttaatgaagGA Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTG-TACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGCTACCGTTTGG-CAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttggtctctaatttcttaatgaagGA Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGCTACCGTTTGGCAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttggtctctaatttcttaatgaagGA Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGCTACCGTTTGGCAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttggtctctaatttcttaatgaagGA Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA------------------------------------------------GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGCTACCGTTTGGCAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAGTGAGAACAAATGAGTATCCTGTTTTGGTCTCTAATTTCTTAATGAAGGA #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCT-AAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag gatactaagggacattcctttaattacttgtcacgtgcattattccacagGGTGATTCTAGTATCCGGTACTTTGAAAACACAGATGAACCC---CACATCCAGTTCTTGATCACATTTGCCAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGCGAGAGGG-CCTGGCAGTCAGCAAGTGTGAAATAGCCcggtaacaacaatcagtggttgtacatcagttatctcagtcttagttgaaac Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag gatactaagggacattcctttaattacttgtcacgtgcattattccacagGGTGATTCTAGTATCCGGTACTTTGAAAACACAGATGAA---CCCCACATCCAGTTCTTGATCACATTTGCCAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGCGAGAGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCcggtaacaacaatcagtggttgtacatcagttatctcagtcttagttgaaac Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG gatactaagggacattcctttaattacttgtcacgtgcattattccacagGGTGATTCTAGTATCCGGTACTTTGAAAACACAGATGAA---CCCCACATCCAGTTCTTGATCACATTTGCCAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGCGAGAGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCCGgtaacaacaatcagtggttgtacatcagttatctcagtcttagttgaaac Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG gatactaagggacattcctttaattacttgtcacgtgcattattccacagGGTGATTCTAGTATCCGGTACTTTGAAAACACAGATGAACCCC---ACATCCAGTTCTTGATCACATTTGCCAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGCGAGAGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCCGgtaacaacaatcagtggttgtacatcagttatctcagtcttagttgaaac Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG gatactaagggacattcctttaattacttgtcacgtgcattattccacagGGTGATTCTAGTATCCGGTACTTTGAAAACACAGATGAACCCC---ACATCCAGTTCTTGATCACATTTGCCAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGCGAGAGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCCGgtaacaacaatcagtggttgtacatcagttatctcagtcttagttgaaac Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG gatactaagggacattcctttaattacttgtcacgtgcattattccacagGGTGATTCTAGTATCCGGTACTTTGAAAACACAGATGAA---CCCCACATCCAGTTCTTGATCACATTTGCCAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGCGAGAGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCCGgtaacaacaatcagtggttgtacatcagttatctcagtcttagttgaaac Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG gatactaagggacattcctttaattacttgtcacgtgcattattccacagGGTGATTCTAGTATCCGGTACTTTGAAAACACAGATGAA---CCCCACATCCAGTTCTTGATCACATTTGCCAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGCGAGAGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCCGgtaacaacaatcagtggttgtacatcagttatctcagtcttagttgaaac Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG gatactaagggacattcctttaattacttgtcacgtgcattattccacagGGTGATTCTAGTATCCGGTACTTTGAAAACACAGATGAACCC---CACATCCAGTTCTTGATCACATTTGCCAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGCGAGAGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCCGgtaacaacaatcagtggttgtacatcagttatctcagtcttagttgaaac #### Coro1b_ID359_9 --> 0 - 0 Original Alignment TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTC-AGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ggtcacattggaaaattggtatgtcttacctcttgacactgtggcttcagTCTGACCTCTACCAAGATGATCTCTACGCA---------GTGCCTGAGGCACTGGTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCCAATCCAAATTTTATCCCACTGCACGAAGCCTACATACCAAGTAAGCAACATGACTTAAAAGGTCAGTCGGC-CAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgcaagtcagtctttaaagatttgttgctttggcactgaggagataccctg Alignment from CESAR TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ggtcacattggaaaattggtatgtcttacctcttgacactgtggcttcagTCTGACCTCTACCAAGATGATCTCTAC---------GCAGTGCCTGAGGCACTGGTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCCAATCCAAATTTTATCCCACTGCACGAAGCCTACATACCAAGTAAGCAACATGACTTAAAAGGTCAGTCGGCCAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgcaagtcagtctttaaagatttgttgctttggcactgaggagataccctg Alignment from Spaln_aa2Genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ggtcacattggaaaattggtatgtcttacctcttgacactgtggcttcagTCTGACCTCTACCAAGATGATCTCTAC---------GCAGTGCCTGAGGCACTGGTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCCAATCCAAATTTTATCCCACTGCACGAAGCCTACATACCAAGTAAGCAACATGACTTAAAAGGTCAGTCGGCCAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgcaagtcagtctttaaagatttgttgctttggcactgaggagataccctg Alignment from Spaln_nt2Genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAA-GGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ggtcacattggaaaattggtatgtcttacctcttgacactgtggcttcagTCTGACCTCTACCAAGATGATCTCTACG---------CAGTGCCTGAGGCACTGGTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCCAATCCAAATTTTATCCCACTGCACGAAGCCTACATACCAAGTAAGCAACATGACTTAAAAGGTCAGTCGGC-CAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgcaagtcagtctttaaagatttgttgctttggcactgaggagataccctg Alignment from Pairagon TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCT-GAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ggtcacattggaaaattggtatgtcttacctcttgacactgtggcttcagTCTGACCTCTACCAAGATGATCTCTAC---------GCAGTGCCTGAGGCACTGGTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCCAATCCAAATTTTATCCCACTGCACGAAGCCTACATACCAAGTAAGCAACATGACTTAAAAGGTCAGTCGGC-CAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgcaagtcagtctttaaagatttgttgctttggcactgaggagataccctg Alignment from Exonerate_protein2genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ggtcacattggaaaattggtatgtcttacctcttgacactgtggcttcagTCTGACCTCTACCAAGATGATCTCTAC---------GCAGTGCCTGAGGCACTGGTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCCAATCCAAATTTTATCCCACTGCACGAAGCCTACATACCAAGTAAGCAACATGACTTAAAAGGTCAGTCGGCCAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCgcaagtcagtctttaaagatttgttgctttggcactgaggagataccctg Alignment from Exonerate_coding2genome ggtcacattggaaaattggtatgtcttacctcttgacactgtggcttcagtctgacctctaccaagatgatctctacgcagtgcctgaggcactggttggagcaaaggagtgggtaagcagtcaggatgccaatccaaattttatcccactgcacgaagcctacataccaagtaagcaacatgacttaaaaggtcagtcggccaatgtgctctcagatagccgaccagccagctacagccgttttggctcctctacagctacagcaattacagatgtgcccagtggtaattttgctggtgctggcgcaagtcagtctttaaagatttgttgctttggcactgaggagataccctg Alignment from GeneWise TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGTGAAG ggtcacattggaaaattggtatgtcttacctcttgacactgtggcttcagTCTGACCTCTACCAAGATGATCTCTAC---------GCAGTGCCTGAGGCACTGGTTGGAGCAAAGGAGTGGGTAAGCAGTCAGGATGCCAATCCAAATTTTATCCCACTGCACGAAGCCTACATACCAAGTAAGCAACATGACTTAAAAGGTCAGTCGGCCAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGCGCAAgtcagtctttaaagatttgttgctttggcactgaggagataccctg #### Cpsf7_ID2863_3 --> 0 - 2 Original Alignment TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTG-GTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg ctgccaagtttgtcctgttatctgaactatgttctcaatcttattcgtagTGGACTACTGATCAGCAACTGATTCAGGTTCTACACTCTATAGGCATATATGACGTGCGTGGAGT-GAAATTTGCAGAGAATCGGGCTAATGGCCCATCTAAGgggtgaggatcaaaaccgtgggggatcccttggcctatcctttgagtgaaaa Alignment from CESAR TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg ctgccaagtttgtcctgttatctgaactatgttctcaatcttattcgtagTGGACTACTGATCAGCAACTGATTCAGGTTCTACACTCTATAGGCATATATGACGTGCGTGGAGTGAAATTTGCAGAGAATCGGGCTAATGGCCCATCTAAGgggtgaggatcaaaaccgtgggggatcccttggcctatcctttgagtgaaaa Alignment from Spaln_aa2Genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgtcctgttatctgaactatgttctcaatcttattcgtagTGGACTACTGATCAGCAACTGATTCAGGTTCTACACTCTATAGGCATATATGACGTGCGTGGAGTGAAATTTGCAGAGAATCGGGCTAATGGCCCATCTAAGGGgtgaggatcaaaaccgtgggggatcccttggcctatcctttgagtgaaaa Alignment from Spaln_nt2Genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTG-GTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgtcctgttatctgaactatgttctcaatcttattcgtagTGGACTACTGATCAGCAACTGATTCAGGTTCTACACTCTATAGGCATATATGACGTGCGTGGAG-TGAAATTTGCAGAGAATCGGGCTAATGGCCCATCTAAGGGgtgaggatcaaaaccgtgggggatcccttggcctatcctttgagtgaaaa Alignment from Pairagon TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTG-GTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgtcctgttatctgaactatgttctcaatcttattcgtagTGGACTACTGATCAGCAACTGATTCAGGTTCTACACTCTATAGGCATATATGACGTGCGTGGAG-TGAAATTTGCAGAGAATCGGGCTAATGGCCCATCTAAGGGgtgaggatcaaaaccgtgggggatcccttggcctatcctttgagtgaaaa Alignment from Exonerate_protein2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgtcctgttatctgaactatgttctcaatcttattcgtagTGGACTACTGATCAGCAACTGATTCAGGTTCTACACTCTATAGGCATATATGACGTGCGTGGAGTGAAATTTGCAGAGAATCGGGCTAATGGCCCATCTAAGGGgtgaggatcaaaaccgtgggggatcccttggcctatcctttgagtgaaaa Alignment from Exonerate_coding2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgtcctgttatctgaactatgttctcaatcttattcgtagTGGACTACTGATCAGCAACTGATTCAGGTTCTACACTCTATAGGCATATATGACGTGCGTGGAGTGAAATTTGCAGAGAATCGGGCTAATGGCCCATCTAAGGGgtgaggatcaaaaccgtgggggatcccttggcctatcctttgagtgaaaa Alignment from GeneWise TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG ctgccaagtttgtcctgttatctgaactatgttctcaatcttattcgtagTGGACTACTGATCAGCAACTGATTCAGGTTCTACACTCTATAGGCATATATGACGTGCGTGGAGTGAAATTTGCAGAGAATCGGGCTAATGGCCCATCTAAGGGgtgaggatcaaaaccgtgggggatcccttggcctatcctttgagtgaaaa #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTG-ACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcaggcACTGCAGGCACTGGGGCGGAGAACCTACATCTGTG-GATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcaggcACTGCAGGCACTGGGGCGGAGAACCTACATCTGTGGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTACATCTGTGGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTACATCTGTGGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACC--------TGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTACATCTGTG--------GATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTACATCTGTGGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Exonerate_coding2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTACATCTGTGGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTACATCTGTGGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGG-GGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg atagaatgctctgcgaattaccttaaccgccccttcttctctctcctcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTAGACGTCAATGGCACAGTTGGACGGTGCAG-TGCACATTGGAAGCTCAGCTTTGTTAATGAGggtaaggatagatgtcgtgcactccaggttacgcgtactagctatcatatc Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg atagaatgctctgcgaattaccttaaccgccccttcttctctctcctcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTAGACGTCAATGGCACAGTTGGACGGTGCAGTGCACATTGGAAGCTCAGCTTTGTTAATGAGggtaaggatagatgtcgtgcactccaggttacgcgtactagctatcatatc Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaatgctctgcgaattaccttaaccgccccttcttctctctcctcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTAGACGTCAATGGCACAGTTGGACGGTGCAGTGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtaaggatagatgtcgtgcactccaggttacgcgtactagctatcatatc Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGG-GGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaatgctctgcgaattaccttaaccgccccttcttctctctcctcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTAGACGTCAATGGCACAGTTGGACGGTGCAG-TGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtaaggatagatgtcgtgcactccaggttacgcgtactagctatcatatc Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCAC--------------TGGAGGCTGAGCTTCGTCAACGAAG atagaatgctctgcgaattaccttaaccgccccttcttctctctcctcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTAGACGTCAATGGCACAGTTGG--------------ACGGTGCAGTGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtaaggatagatgtcgtgcactccaggttacgcgtactagctatcatatc Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaatgctctgcgaattaccttaaccgccccttcttctctctcctcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTAGACGTCAATGGCACAGTTGGACGGTGCAGTGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtaaggatagatgtcgtgcactccaggttacgcgtactagctatcatatc Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaatgctctgcgaattaccttaaccgccccttcttctctctcctcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTAGACGTCAATGGCACAGTTGGACGGTGCAGTGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtaaggatagatgtcgtgcactccaggttacgcgtactagctatcatatc Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaatgctctgcgaattaccttaaccgccccttcttctctctcctcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTAGACGTCAATGGCACAGTTGGACGGTGCAGTGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtaaggatagatgtcgtgcactccaggttacgcgtactagctatcatatc #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAA-CACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACCACTTGC-CCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTggtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgaa Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACCACTTGCCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTggtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgaa Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACCACTTGCCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgaa Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAAC-ACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACCACTTGC-CCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgaa Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAA-CACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACCACTTGCC-CTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgaa Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACCACTTGCCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgaa Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACCACTTGCCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgaa Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACCACTTGCCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgaa #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGC-TCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG taggctaaggcttgactgcagaaagtgaagggtgtcacatctattaacagagTTTCGAAATGTTACCCTTGGCCTCACTCCTTC-ATTGTTAGACAAAGGTCCCCTACCCCAAgtaagtgggagaatgtcacattgggagaagataaatccaaaatttctact Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG taggctaaggcttgactgcagaaagtgaagggtgtcacatctattaacagagTTTCGAAATGTTACCCTTGGCCTCACTCCTTCATTGTTAGACAAAGGTCCCCTACCCCAAgtaagtgggagaatgtcacattgggagaagataaatccaaaatttctact Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG taggctaaggcttgactgcagaaagtgaagggtgtcacatctattaacagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTTCATTGTTAGACAAAGGTCCCCTACCCCAAgtaagtgggagaatgtcacattgggagaagataaatccaaaatttctact Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGC-TCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG taggctaaggcttgactgcagaaagtgaagggtgtcacatctattaacagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTT-CATTGTTAGACAAAGGTCCCCTACCCCAAgtaagtgggagaatgtcacattgggagaagataaatccaaaatttctact Alignment from Pairagon AGTTTAGAAATGCGACTTTCAG-CTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG taggctaaggcttgactgcagaaagtgaagggtgtcacatctattaacagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTT-CATTGTTAGACAAAGGTCCCCTACCCCAAgtaagtgggagaatgtcacattgggagaagataaatccaaaatttctact Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG taggctaaggcttgactgcagaaagtgaagggtgtcacatctattaacagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTTCATTGTTAGACAAAGGTCCCCTACCCCAAgtaagtgggagaatgtcacattgggagaagataaatccaaaatttctact Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG taggctaaggcttgactgcagaaagtgaagggtgtcacatctattaacagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTTCATTGTTAGACAAAGGTCCCCTACCCCAAgtaagtgggagaatgtcacattgggagaagataaatccaaaatttctact Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG taggctaaggcttgactgcagaaagtgaagggtgtcacatctattaacagAGTTTCGAAATGTTACCCTTGGCCTCACTCCTTCATTGTTAGACAAAGGTCCCCTACCCCAAgtaagtgggagaatgtcacattgggagaagataaatccaaaatttctact #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAG-ACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa cgtcctttatagcagtccatgaggttgtcaaccctgccctgtctccacagggGGTTTGGAGACGGAAGATGACTATGGCTATCAGGATCATGTTCAGCACCTGTA-CTTCTCAGCACAGATGGCAAAAGTCTATGTCAATGATTTGGTGGAGCTGAGTCAAAATGAAAATagtaagtaagggctaccctaagtaacttagctaacatgtcccttgtatttc Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa cgtcctttatagcagtccatgaggttgtcaaccctgccctgtctccacagggGGTTTGGAGACGGAAGATGACTATGGCTATCAGGATCATGTTCAGCACCTGTACTTCTCAGCACAGATGGCAAAAGTCTATGTCAATGATTTGGTGGAGCTGAGTCAAAATGAAAATagtaagtaagggctaccctaagtaacttagctccgttcttacctgtctttg Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA cgtcctttatagcagtccatgaggttgtcaaccctgccctgtctccacagGGGGTTTGGAGACGGAAGATGACTATGGCTATCAGGATCATGTTCAGCACCTGTACTTCTCAGCACAGATGGCAAAAGTCTATGTCAATGATTTGGTGGAGCTGAGTCAAAATGAAAATAgtaagtaagggctaccctaagtaacttagctaacatgtcccttgtatttc Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA cgtcctttatagcagtccatgaggttgtcaaccctgccctgtctccacagGGGGTTTGGAGACGGAAGATGACTATGGCTATCAGGATCATGTTCAGCACCTGTACTTCTCAGCACAGATGGCAAAAGTCTATGTCAATGATTTGGTGGAGCTGAGTCAAAATGAAAATAgtaagtaagggctaccctaagtaacttagctaacatgtcccttgtatttc Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAG-ACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA cgtcctttatagcagtccatgaggttgtcaaccctgccctgtctccacagGGGGTTTGGAGACGGAAGATGACTATGGCTATCAGGATCATGTTCAGCACCTGT-ACTTCTCAGCACAGATGGCAAAAGTCTATGTCAATGATTTGGTGGAGCTGAGTCAAAATGAAAATAgtaagtaagggctaccctaagtaacttagctaacatgtcccttgtatttc Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA cgtcctttatagcagtccatgaggttgtcaaccctgccctgtctccacagGGGGTTTGGAGACGGAAGATGACTATGGCTATCAGGATCATGTTCAGCACCTGTACTTCTCAGCACAGATGGCAAAAGTCTATGTCAATGATTTGGTGGAGCTGAGTCAAAATGAAAATAgtaagtaagggctaccctaagtaacttagctaacatgtcccttgtatttc Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA cgtcctttatagcagtccatgaggttgtcaaccctgccctgtctccacagGGGGTTTGGAGACGGAAGATGACTATGGCTATCAGGATCATGTTCAGCACCTGTACTTCTCAGCACAGATGGCAAAAGTCTATGTCAATGATTTGGTGGAGCTGAGTCAAAATGAAAATAgtaagtaagggctaccctaagtaacttagctaacatgtcccttgtatttc Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA cgtcctttatagcagtccatgaggttgtcaaccctgccctgtctccacagGGGGTTTGGAGACGGAAGATGACTATGGCTATCAGGATCATGTTCAGCACCTGTACTTCTCAGCACAGATGGCAAAAGTCTATGTCAATGATTTGGTGGAGCTGAGTCAAAATGAAAATAgtaagtaagggctaccctaagtaacttagctaacatgtcccttgtatttc #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAG-AAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG agtaagggctaccctaagtaacttagctccgttcttacctgtctttgcagagACAGCAGCCTGGCTAGCCCAGCAAAGGTCCTA-CTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgagtatgtttcatttgaacccagccacagggcttctggctccctgtgt Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG agtaagggctaccctaagtaacttagctccgttcttacctgtctttgcagagACAGCAGCCTGGCTAGCCCAGCAAAGGTCCTACTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgagtatgtttcatttgaacccagccacagggcttctggctccctgtgt Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG agtaagggctaccctaagtaacttagctccgttcttacctgtctttgcagAGACAGCAGCCTGGCTAGCCCAGCAAAGGTCCTACTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgagtatgtttcatttgaacccagccacagggcttctggctccctgtgt Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG agtaagggctaccctaagtaacttagctccgttcttacctgtctttgcagAGACAGCAGCCTGGCTAGCCCAGCAAAGGTCCTACTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgagtatgtttcatttgaacccagccacagggcttctggctccctgtgt Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAG-AAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG agtaagggctaccctaagtaacttagctccgttcttacctgtctttgcagAGACAGCAGCCTGGCTAGCCCAGCAAAGGTCCTA-CTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgagtatgtttcatttgaacccagccacagggcttctggctccctgtgt Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG agtaagggctaccctaagtaacttagctccgttcttacctgtctttgcagAGACAGCAGCCTGGCTAGCCCAGCAAAGGTCCTACTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgagtatgtttcatttgaacccagccacagggcttctggctccctgtgt Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG agtaagggctaccctaagtaacttagctccgttcttacctgtctttgcagAGACAGCAGCCTGGCTAGCCCAGCAAAGGTCCTACTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgagtatgtttcatttgaacccagccacagggcttctggctccctgtgt Alignment from GeneWise AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG agtaagggctaccctaagtaacttagctccgttcttacctgtctttgcagAGACAGCAGCCTGGCTAGCCCAGCAAAGGTCCTACTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgagtatgtttcatttgaacccagccacagggcttctggctccctgtgt #### Ctsf_ID685_13 --> 2 - 0 Original Alignment gcTCTAACATTCCTTAC-TGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GG cgtaagctctggtaattccttactattagacactatggtcccctccacaggtTCTAACATCCCTTACCTGGGCAATCA-GAATAGCTGGGGAAGTGACTGGGGTGAGGAGgtgagaaggaggtaaccttgggtctactttttttttttttccttttagGG Alignment from CESAR gcTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GG cgtaagctctggtaattccttactattagacactatggtcccctccacaggtTCTAACATCCCTTACCTGGGCAATCAGAATAGCTGGGGAAGTGACTGGGGTGAGGAGgtgagaaggaggtaaccttgggtctatatttgtttgtttgcttttcagGG Alignment from Spaln_aa2Genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GG cgtaagctctggtaattccttactattagacactatggtcccctccacagGTTCTAACATCCCTTACCTGGGCAATCAGAATAGCTGGGGAAGTGACTGGGGTGAGGAGgtgagaaggaggtaaccttgggtctactttttttttttttccttttagGG Alignment from Spaln_nt2Genome GCTCTAACATTCCTTAC-TGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GG cgtaagctctggtaattccttactattagacactatggtcccctccacagGTTCTAACATCCCTTACCTGGGCAATC-AGAATAGCTGGGGAAGTGACTGGGGTGAGGAGgtgagaaggaggtaaccttgggtctactttttttttttttccttttagGG Alignment from Pairagon GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GG cgtaagctctggtaattccttactattagacactatggtcccctccacagGTTCTAACATCCCTTACCTGGGCAATCAGAATAGCTGGGGAAGTGACTGGGGTGAGGAGgtgagaaggaggtaaccttgggtctactttttttttttttccttttagGG Alignment from Exonerate_protein2genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GG cgtaagctctggtaattccttactattagacactatggtcccctccacagGTTCTAACATCCCTTACCTGGGCAATCAGAATAGCTGGGGAAGTGACTGGGGTGAGGAGgtgagaaggaggtaaccttgggtctactttttttttttttccttttagGG Alignment from Exonerate_coding2genome cgtaagctctggtaattccttactattagacactatggtcccctccacaggttctaacatcccttacctgggcaatcagaatagctggggaagtgactggggtgaggaggtgagaaggaggtaaccttgggtctactttttttttttttccttttaggg Alignment from GeneWise GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG GG cgtaagctctggtaattccttactattagacactatggtcccctccacagGTTCTAACATCCCTTACCTGGGCAATCAGAATAGCTGGGGAAGTGACTGGGGTGAGGAGgtgagaaggaggtaaccttgggtctactttttttttttttccttttagGG #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAG-AAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg caagcgtacttgacatcaaaatcttgctgatgacttcttcctctctgcaggtAGTCTAGCCACTGAAAAGGAATTTCTATTCCAGAAGGAAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAACGAAGTGG-CTGGATCCCA------GCCACATTGTCTAATAATGAGCAGggtaagttcagggtgagatgaggtagctctgtgtctgccacctgaccggta Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg caagcgtacttgacatcaaaatcttgctgatgacttcttcctctctgcaggtAGTCTAGCCACTGAAAAGGAATTTCTATTCCAGAAGGAAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAACGAAGTGGCTGGATCCCA------GCCACATTGTCTAATAATGAGCAGggtaagttcagggtgagatgaggtagctctgtgtctgccacctgaccggta Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG caagcgtacttgacatcaaaatcttgctgatgacttcttcctctctgcagGTAGTCTAGCCACTGAAAAGGAATTTCTATTCCAGAAGGAAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAACGAAGTGGCTGGATCCCA------GCCACATTGTCTAATAATGAGCAGGgtaagttcagggtgagatgaggtagctctgtgtctgccacctgaccggta Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGA-AGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG caagcgtacttgacatcaaaatcttgctgatgacttcttcctctctgcagGTAGTCTAGCCACTGAAAAGGAATTTCTATTCCAGAAGGAAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAACGAAGTGG-CTGGATCCCAG------CCACATTGTCTAATAATGAGCAGGgtaagttcagggtgagatgaggtagctctgtgtctgccacctgaccggta Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGT--------------------------ACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG caagcgtacttgacatcaaaatcttgctgatgacttcttcctctctgcagGTAGTCTAGCCACTGAAAAGGAATTTCTATTCCAGAAGGAAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAACGAAGTGGCTGGATCCCAGCCACA--------------------------------TTGTCTAATAATGAGCAGGgtaagttcagggtgagatgaggtagctctgtgtctgccacctgaccggta Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG caagcgtacttgacatcaaaatcttgctgatgacttcttcctctctgcagGTAGTCTAGCCACTGAAAAGGAATTTCTATTCCAGAAGGAAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAACGAAGTGGCTGGATCCCA------GCCACATTGTCTAATAATGAGCAGGgtaagttcagggtgagatgaggtagctctgtgtctgccacctgaccggta Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG caagcgtacttgacatcaaaatcttgctgatgacttcttcctctctgcagGTAGTCTAGCCACTGAAAAGGAATTTCTATTCCAGAAGGAAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAACGAAGTGGCTGGATCCCA------GCCACATTGTCTAATAATGAGCAGGgtaagttcagggtgagatgaggtagctctgtgtctgccacctgaccggta Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG caagcgtacttgacatcaaaatcttgctgatgacttcttcctctctgcagGTAGTCTAGCCACTGAAAAGGAATTTCTATTCCAGAAGGAAAGAAAGCCTCACAGATGCCTGGCAAAAAAGTATAAACGAAGTGGCTGGATCCCA------GCCACATTGTCTAATAATGAGCAGGgtaagttcagggtgagatgaggtagctctgtgtctgccacctgaccggta #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAA-GCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacactgttaccacactgctgggacctacgtgtttatttcccccacagagGAGCAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAATGGACCCCAAATATGACCAAGAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAACGCAA-AAACATTATCTCATCAATTGAGAACCAGgtaagtgccttagcttggtttgtgtgaatggaactcaaggacaccctctc Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacactgttaccacactgctgggacctacgtgtttatttcccccacagagGAGCAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAATGGACCCCAAATATGACCAAGAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAACGCAAAAACATTATCTCATCAATTGAGAACCAGgtaagtgccttagcttggtttgtgtgaatggaactcaaggacaattattt Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGCTGC-------- accacactgttaccacactgctgggacctacgtgtttatttcccccacagAGGAGCAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAATGGACCCCAAATATGACCAAGAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAACGCAAAAACATTATCTCATCAATTGAGAACCAGGTAAGTGCCTTAGCTTGgtttgtgtgaatggaactcaaggacaccctctc Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacactgttaccacactgctgggacctacgtgtttatttcccccacagAGGAGCAGTTTGGGCAATTATATGGG-AGAAGA--TCCCCAGAATGGACCCCAAATATGACCAAGAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAACGCAAAAACATTATCTCATCAATTGAGAACCAGgtaagtgccttagcttggtttgtgtgaatggaactcaaggacaccctctc Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacactgttaccacactgctgggacctacgtgtttatttcccccacagAGGAGCAGTTTGGGCAATTATATGGG-AGAAGA--TCCCCAGAATGGACCCCAAATATGACCAAGAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAACGCAAAAACATTATCTCATCAATTGAGAACCAGgtaagtgccttagcttggtttgtgtgaatggaactcaaggacaccctctc Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacactgttaccacactgctgggacctacgtgtttatttcccccacagAGGAGCAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAATGGACCCCAAATATGACCAAGAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAACGCAAAAACATTATCTCATCAATTGAGAACCAGgtaagtgccttagcttggtttgtgtgaatggaactcaaggacaccctctc Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGC accacactgttaccacactgctgggacctacgtgtttatttcccccacagAGGAGCAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAATGGACCCCAAATATGACCAAGAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAACGCAAAAACATTATCTCATCAATTGAGAACCAGGTAAGTGCCTTAGCTTGGTTTGTGTGAATGGAACTCAAGGACACCCTCTC Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGC---------TG accacactgttaccacactgctgggacctacgtgtttatttcccccacagAGGAGCAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAATGGACCCCAAATATGACCAAGAGGGTGGAGTCAAACACATGGGGGGAGTCTGTGCCTCGAACCTGTGATTGGTGTAAACGCAAAAACATTATCTCATCAATTGAGAACCAGGTAAGTGCCTTAGCTTGgtttgtgtgaatggaactcaaggacaccctctc #### Ctsw_ID1024_2 --> 0 - 1 Original Alignment GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAA-GTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAg taaatcaggatgagaggagaatcatgacaaactatttacttttattccagGATACAGGTCCCCGACCACTTGAGTTGAAGGAACGTCT-TAGACTGTTTGACATACGGCTCAACCAAAGCTACTGGAACCCAACAggtgagtcaaggtatagacatttctggtacaactcctgttgttggctgaaa Alignment from CESAR GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAg taaatcaggatgagaggagaatcatgacaaactatttacttttattccagGATACAGGTCCCCGACCACTTGAGTTGAAGGAACGTCTTAGACTGTTTGACATACGGCTCAACCAAAGCTACTGGAACCCAACAggtgagtcaaggtatagacatttctggtacaactcctgttgttggctgaaa Alignment from Spaln_aa2Genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG taaatcaggatgagaggagaatcatgacaaactatttacttttattccagGATACAGGTCCCCGACCACTTGAGTTGAAGGAACGTCTTAGACTGTTTGACATACGGCTCAACCAAAGCTACTGGAACCCAACAGgtgagtcaaggtatagacatttctggtacaactcctgttgttggctgaaa Alignment from Spaln_nt2Genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAA-GTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG taaatcaggatgagaggagaatcatgacaaactatttacttttattccagGATACAGGTCCCCGACCACTTGAGTTGAAGGAACGTCTT-AGACTGTTTGACATACGGCTCAACCAAAGCTACTGGAACCCAACAGgtgagtcaaggtatagacatttctggtacaactcctgttgttggctgaaa Alignment from Pairagon GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG taaatcaggatgagaggagaatcatgacaaactatttacttttattccagGATACAGGTCCCCGACCACTTGAGTTGAAGGAACGTCTTAGACTGTTTGACATACGGCTCAACCAAAGCTACTGGAACCCAACAGgtgagtcaaggtatagacatttctggtacaactcctgttgttggctgaaa Alignment from Exonerate_protein2genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG taaatcaggatgagaggagaatcatgacaaactatttacttttattccagGATACAGGTCCCCGACCACTTGAGTTGAAGGAACGTCTTAGACTGTTTGACATACGGCTCAACCAAAGCTACTGGAACCCAACAGgtgagtcaaggtatagacatttctggtacaactcctgttgttggctgaaa Alignment from Exonerate_coding2genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG taaatcaggatgagaggagaatcatgacaaactatttacttttattccagGATACAGGTCCCCGACCACTTGAGTTGAAGGAACGTCTTAGACTGTTTGACATACGGCTCAACCAAAGCTACTGGAACCCAACAGgtgagtcaaggtatagacatttctggtacaactcctgttgttggctgaaa Alignment from GeneWise GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG taaatcaggatgagaggagaatcatgacaaactatttacttttattccagGATACAGGTCCCCGACCACTTGAGTTGAAGGAACGTCTTAGACTGTTTGACATACGGCTCAACCAAAGCTACTGGAACCCAACAGgtgagtcaaggtatagacatttctggtacaactcctgttgttggctgaaa #### Cutc_ID8809_4 --> 2 - 1 Original Alignment gtGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGT-GAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAg tatgccacaggggtagctgaactctggcggattctctcattgacccttaggaGTGCTGCAAGTGGTGACGCAGAGTGTCCATGTCCCAGTGTTTGTGATCATTCACCCACGAGGAGGTGACTTCCTACACTCAGACCAGCGAAGTGG-AGTGATGATAGCTGATATTTGCCTAGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAACTAAGTATATCTCTTGTGggtaagtgtctagacaccagctaaaatacatgtgtaccatacaattccagc Alignment from CESAR gtGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAg tatgccacaggggtagctgaactctggcggattctctcattgacccttaggaGTGCTGCAAGTGGTGACGCAGAGTGTCCATGTCCCAGTGTTTGTGATCATTCACCCACGAGGAGGTGACTTCCTACACTCAGACCAGCGAAGTGGAGTGATGATAGCTGATATTTGCCTAGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAACTAAGTATATCTCTTGTGggtaagtgtctagacaccagctaaaatacatgtgtaccatacaattccagc Alignment from Spaln_aa2Genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG tatgccacaggggtagctgaactctggcggattctctcattgacccttagGAGTGCTGCAAGTGGTGACGCAGAGTGTCCATGTCCCAGTGTTTGTGATCATTCACCCACGAGGAGGTGACTTCCTACACTCAGACCAGCGAAGTGGAGTGATGATAGCTGATATTTGCCTAGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAACTAAGTATATCTCTTGTGGgtaagtgtctagacaccagctaaaatacatgtgtaccatacaattccagc Alignment from Spaln_nt2Genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACC-GTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG tatgccacaggggtagctgaactctggcggattctctcattgacccttagGAGTGCTGCAAGTGGTGACGCAGAGTGTCCATGTCCCAGTGTTTGTGATCATTCACCCACGAGGAGGTGACTTCCTACACTCAGACCAGCGAAGTGGA-GTGATGATAGCTGATATTTGCCTAGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAACTAAGTATATCTCTTGTGGgtaagtgtctagacaccagctaaaatacatgtgtaccatacaattccagc Alignment from Pairagon GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACC-GTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG tatgccacaggggtagctgaactctggcggattctctcattgacccttagGAGTGCTGCAAGTGGTGACGCAGAGTGTCCATGTCCCAGTGTTTGTGATCATTCACCCACGAGGAGGTGACTTCCTACACTCAGACCAGCGAAGTGGA-GTGATGATAGCTGATATTTGCCTAGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAACTAAGTATATCTCTTGTGGgtaagtgtctagacaccagctaaaatacatgtgtaccatacaattccagc Alignment from Exonerate_protein2genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG tatgccacaggggtagctgaactctggcggattctctcattgacccttagGAGTGCTGCAAGTGGTGACGCAGAGTGTCCATGTCCCAGTGTTTGTGATCATTCACCCACGAGGAGGTGACTTCCTACACTCAGACCAGCGAAGTGGAGTGATGATAGCTGATATTTGCCTAGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAACTAAGTATATCTCTTGTGGgtaagtgtctagacaccagctaaaatacatgtgtaccatacaattccagc Alignment from Exonerate_coding2genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAGCTCTTTGC tatgccacaggggtagctgaactctggcggattctctcattgacccttagGAGTGCTGCAAGTGGTGACGCAGAGTGTCCATGTCCCAGTGTTTGTGATCATTCACCCACGAGGAGGTGACTTCCTACACTCAGACCAGCGAAGTGGAGTGATGATAGCTGATATTTGCCTAGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAACTAAGTATATCTCTTGTGGGTAAGTGTctagacaccagctaaaatacatgtgtaccatacaattccagc Alignment from GeneWise GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAGCTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG tatgccacaggggtagctgaactctggcggattctctcattgacccttagGAGTGCTGCAAGTGGTGACGCAGAGTGTCCATGTCCCAGTGTTTGTGATCATTCACCCACGAGGAGGTGACTTCCTACACTCAGACCAGCGAAGTGGAGTGATGATAGCTGATATTTGCCTAGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGTGCATTGACTGAAGATGGACATGTTGACAGAGAACTAAGTATATCTCTTGTGGGT------------------------------AAGTgtctagacaccagc #### Cwf19l1_ID8941_3 --> 0 - 1 Original Alignment CTGCTGTTGTGTGTAGGAAAC-TTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAg tcagtagagagtaagtccatagagaaggctgctgtcttttgtccccacagTTGTTATTATGTGTGGGAAACCTTCTTTG-CTCTGCTCAGGATGCTGGGTGGGATGAATATAAGACTGGCAACAAGAAAggtaagtgagtattggtaagattggctacacattgctttaaataagatttg Alignment from CESAR CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAg tcagtagagagtaagtccatagagaaggctgctgtcttttgtccccacagTTGTTATTATGTGTGGGAAACCTTCTTTGCTCTGCTCAGGATGCTGGGTGGGATGAATATAAGACTGGCAACAAGAAAggtaagtgagtattggtaagattggctacacattgctttaaataagatttg Alignment from Spaln_aa2Genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcagtagagagtaagtccatagagaaggctgctgtcttttgtccccacagTTGTTATTATGTGTGGGAAACCTTCTTTGCTCTGCTCAGGATGCTGGGTGGGATGAATATAAGACTGGCAACAAGAAAGgtaagtgagtattggtaagattggctacacattgctttaaataagatttg Alignment from Spaln_nt2Genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcagtagagagtaagtccatagagaaggctgctgtcttttgtccccacagTTGTTATTATGTGTGGGAAACCTTCTTTGCTCTGCTCAGGATGCTGGGTGGGATGAATATAAGACTGGCAACAAGAAAGgtaagtgagtattggtaagattggctacacattgctttaaataagatttg Alignment from Pairagon CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcagtagagagtaagtccatagagaaggctgctgtcttttgtccccacagTTGTTATTATGTGTGGGAAACCTTCTTTGCTCTGCTCAGGATGCTGGGTGGGATGAATATAAGACTGGCAACAAGAAAGgtaagtgagtattggtaagattggctacacattgctttaaataagatttg Alignment from Exonerate_protein2genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcagtagagagtaagtccatagagaaggctgctgtcttttgtccccacagTTGTTATTATGTGTGGGAAACCTTCTTTGCTCTGCTCAGGATGCTGGGTGGGATGAATATAAGACTGGCAACAAGAAAGgtaagtgagtattggtaagattggctacacattgctttaaataagatttg Alignment from Exonerate_coding2genome tcagtagagagtaagtccatagagaaggctgctgtcttttgtccccacagttgttattatgtgtgggaaaccttctttgctctgctcaggatgctgggtgggatgaatataagactggcaacaagaaaggtaagtgagtattggtaagattggctacacattgctttaaataagatttg Alignment from GeneWise CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcagtagagagtaagtccatagagaaggctgctgtcttttgtccccacagTTGTTATTATGTGTGGGAAACCTTCTTTGCTCTGCTCAGGATGCTGGGTGGGATGAATATAAGACTGGCAACAAGAAAGgtaagtgagtattggtaagattggctacacattgctttaaataagatttg #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAG-ACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaatgatggccactttcatgtgtccccttctctctctttcagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGTTTTATCTACAAGCACACATC-GTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACTTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagtctgcaaggccaattgaagtaattactggaaggccattgctacaa Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaatgatggccactttcatgtgtccccttctctctctttcagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGTTTTATCTACAAGCACACATCGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACTTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagtctgcaaggccaattgaagtaattactggaaggccattgctacaa Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaatgatggccactttcatgtgtccccttctctctctttcagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGTTTTATCTACAAGCACACATCGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACTTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagtctgcaaggccaattgaagtaattactggaaggccattgctacaa Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaatgatggccactttcatgtgtccccttctctctctttcagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGTTTTATCTACAAGCACACATCGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACTTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagtctgcaaggccaattgaagtaattactggaaggccattgctacaa Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAG-ACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaatgatggccactttcatgtgtccccttctctctctttcagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGTTTTATCTACAAGCACACATC-GTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACTTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagtctgcaaggccaattgaagtaattactggaaggccattgctacaa Alignment from Exonerate_protein2genome ccccttgcaaatgatggccactttcatgtgtccccttctctctctttcagcgcaggaagtttgttcagatggagcacaggaagtatggttttatctacaagcacacatcgtttggctggccaacagtgcgtgtgatgggtacagataacgttcgtcgtatattgctgggggagcaccgcttagtgtcagttcactggcctgcatcagtacgtattatcctgggtgctggctgcctttctaacttgtatgattcctcacacaagaaacaaaagaaggtgagtctgcaaggccaattgaagtaattactggaaggccattgctacaa Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaatgatggccactttcatgtgtccccttctctctctttcagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGTTTTATCTACAAGCACACATCGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACTTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagtctgcaaggccaattgaagtaattactggaaggccattgctacaa Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaatgatggccactttcatgtgtccccttctctctctttcagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGTTTTATCTACAAGCACACATCGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACTTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagtctgcaaggccaattgaagtaattactggaaggccattgctacaa #### Cyp2c39_ID7783_2 --> 0 - 1 Original Alignment TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAA-GCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTg tgtagaaggtcagaattgttagtgtttgatccaattatttttttctgtagTTCTCAAAAGCCTATGGCCCCCTTTTCACTGTGTATTTAGGTTCTCGTCCCACTGTTGTGCTATATGGGTATGAAGCAGTGAAGGAGCGCTCTGA-CGATCATGGAGAGGAGTTCTCTGACAGGGGAAGCATCCCAATGGTAGATGAGATTAATACTGGCCTAggtaatgacattaagaggcaagttcaggtttgaggcgttgtaattaattgg Alignment from CESAR TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTg tgtagaaggtcagaattgttagtgtttgatccaattatttttttctgtagTTCTCAAAAGCCTATGGCCCCCTTTTCACTGTGTATTTAGGTTCTCGTCCCACTGTTGTGCTATATGGGTATGAAGCAGTGAAGGAGCGCTCTGACGATCATGGAGAGGAGTTCTCTGACAGGGGAAGCATCCCAATGGTAGATGAGATTAATACTGGCCTAggtaatgacattaagaggcaagttcaggtttgaggcgttgtaattaattgg Alignment from Spaln_aa2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG tgtagaaggtcagaattgttagtgtttgatccaattatttttttctgtagTTCTCAAAAGCCTATGGCCCCCTTTTCACTGTGTATTTAGGTTCTCGTCCCACTGTTGTGCTATATGGGTATGAAGCAGTGAAGGAGCGCTCTGACGATCATGGAGAGGAGTTCTCTGACAGGGGAAGCATCCCAATGGTAGATGAGATTAATACTGGCCTAGgtaatgacattaagaggcaagttcaggtttgaggcgttgtaattaattgg Alignment from Spaln_nt2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG tgtagaaggtcagaattgttagtgtttgatccaattatttttttctgtagTTCTCAAAAGCCTATGGCCCCCTTTTCACTGTGTATTTAGGTTCTCGTCCCACTGTTGTGCTATATGGGTATGAAGCAGTGAAGGAGCGCTCTGACGATCATGGAGAGGAGTTCTCTGACAGGGGAAGCATCCCAATGGTAGATGAGATTAATACTGGCCTAGgtaatgacattaagaggcaagttcaggtttgaggcgttgtaattaattgg Alignment from Pairagon TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAA-GCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG tgtagaaggtcagaattgttagtgtttgatccaattatttttttctgtagTTCTCAAAAGCCTATGGCCCCCTTTTCACTGTGTATTTAGGTTCTCGTCCCACTGTTGTGCTATATGGGTATGAAGCAGTGAAGGAGCGCTCTGA-CGATCATGGAGAGGAGTTCTCTGACAGGGGAAGCATCCCAATGGTAGATGAGATTAATACTGGCCTAGgtaatgacattaagaggcaagttcaggtttgaggcgttgtaattaattgg Alignment from Exonerate_protein2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG tgtagaaggtcagaattgttagtgtttgatccaattatttttttctgtagTTCTCAAAAGCCTATGGCCCCCTTTTCACTGTGTATTTAGGTTCTCGTCCCACTGTTGTGCTATATGGGTATGAAGCAGTGAAGGAGCGCTCTGACGATCATGGAGAGGAGTTCTCTGACAGGGGAAGCATCCCAATGGTAGATGAGATTAATACTGGCCTAGgtaatgacattaagaggcaagttcaggtttgaggcgttgtaattaattgg Alignment from Exonerate_coding2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG tgtagaaggtcagaattgttagtgtttgatccaattatttttttctgtagTTCTCAAAAGCCTATGGCCCCCTTTTCACTGTGTATTTAGGTTCTCGTCCCACTGTTGTGCTATATGGGTATGAAGCAGTGAAGGAGCGCTCTGACGATCATGGAGAGGAGTTCTCTGACAGGGGAAGCATCCCAATGGTAGATGAGATTAATACTGGCCTAGgtaatgacattaagaggcaagttcaggtttgaggcgttgtaattaattgg Alignment from GeneWise TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG tgtagaaggtcagaattgttagtgtttgatccaattatttttttctgtagTTCTCAAAAGCCTATGGCCCCCTTTTCACTGTGTATTTAGGTTCTCGTCCCACTGTTGTGCTATATGGGTATGAAGCAGTGAAGGAGCGCTCTGACGATCATGGAGAGGAGTTCTCTGACAGGGGAAGCATCCCAATGGTAGATGAGATTAATACTGGCCTAGgtaatgacattaagaggcaagttcaggtttgaggcgttgtaattaattgg #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTAT---GGCCCTGTGTAT-ACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ctattacatggcagacagatatctcttgcagcttaatgtttttctcttagTTATCCAAAGTCTATGATGGTCCTGTGTATCACACTGT-TTTAGGTAAGAATCCTACTGTAGTATTACAGGGTTATGAGGCGGTGAGGGAATCGTTAGTTGACCATGGAGAAGAATTTGCTGGGAGAGAGAGACTACCTGTTTTTGATAAAGCTACCAATGGAATGggtacatttagatttccaatgccagtaaaggggagtacgagtccatagcag Alignment from CESAR TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ctattacatggcagacagatatctcttgcagcttaatgtttttctcttagTTATCCAAAGTCTATGATGGTCCTGTGTATCACACTGTTTTAGGTAAGAATCCTACTGTAGTATTACAGGGTTATGAGGCGGTGAGGGAATCGTTAGTTGACCATGGAGAAGAATTTGCTGGGAGAGAGAGACTACCTGTTTTTGATAAAGCTACCAATGGAATGggtacatttagatttccaatgccagtaaaggggagtacgagtccatagcag Alignment from Spaln_aa2Genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ctattacatggcagacagatatctcttgcagcttaatgtttttctcttagTTATCCAAAGTCTATGATGGTCCTGTGTATCACACTGTTTTAGGTAAGAATCCTACTGTAGTATTACAGGGTTATGAGGCGGTGAGGGAATCGTTAGTTGACCATGGAGAAGAATTTGCTGGGAGAGAGAGACTACCTGTTTTTGATAAAGCTACCAATGGAATGGgtacatttagatttccaatgccagtaaaggggagtacgagtccatagcag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATG---GCCCTGTGTAT-ACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ctattacatggcagacagatatctcttgcagcttaatgtttttctcttagTTATCCAAAGTCTATGATGGTCCTGTGTATCACACTGT-TTTAGGTAAGAATCCTACTGTAGTATTACAGGGTTATGAGGCGGTGAGGGAATCGTTAGTTGACCATGGAGAAGAATTTGCTGGGAGAGAGAGACTACCTGTTTTTGATAAAGCTACCAATGGAATGGgtacatttagatttccaatgccagtaaaggggagtacgagtccatagcag Alignment from Pairagon TTATCAAAAGTTT---ATGGCCCTGTGTAT---ACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ctattacatggcagacagatatctcttgcagcttaatgtttttctcttagTTATCCAAAGTCTATGATGGTCCTGTGTATCACACTGT---TTTAGGTAAGAATCCTACTGTAGTATTACAGGGTTATGAGGCGGTGAGGGAATCGTTAGTTGACCATGGAGAAGAATTTGCTGGGAGAGAGAGACTACCTGTTTTTGATAAAGCTACCAATGGAATGGgtacatttagatttccaatgccagtaaaggggagtacgagtccatagcag Alignment from Exonerate_protein2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ctattacatggcagacagatatctcttgcagcttaatgtttttctcttagTTATCCAAAGTCTATGATGGTCCTGTGTATCACACTGTTTTAGGTAAGAATCCTACTGTAGTATTACAGGGTTATGAGGCGGTGAGGGAATCGTTAGTTGACCATGGAGAAGAATTTGCTGGGAGAGAGAGACTACCTGTTTTTGATAAAGCTACCAATGGAATGGgtacatttagatttccaatgccagtaaaggggagtacgagtccatagcag Alignment from Exonerate_coding2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ctattacatggcagacagatatctcttgcagcttaatgtttttctcttagTTATCCAAAGTCTATGATGGTCCTGTGTATCACACTGTTTTAGGTAAGAATCCTACTGTAGTATTACAGGGTTATGAGGCGGTGAGGGAATCGTTAGTTGACCATGGAGAAGAATTTGCTGGGAGAGAGAGACTACCTGTTTTTGATAAAGCTACCAATGGAATGGgtacatttagatttccaatgccagtaaaggggagtacgagtccatagcag Alignment from GeneWise TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ctattacatggcagacagatatctcttgcagcttaatgtttttctcttagTTATCCAAAGTCTATGATGGTCCTGTGTATCACACTGTTTTAGGTAAGAATCCTACTGTAGTATTACAGGGTTATGAGGCGGTGAGGGAATCGTTAGTTGACCATGGAGAAGAATTTGCTGGGAGAGAGAGACTACCTGTTTTTGATAAAGCTACCAATGGAATGGgtacatttagatttccaatgccagtaaaggggagtacgagtccatagcag #### Cyp2c50_ID7863_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGC-TCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacaggcTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACCTCAATTA-TTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTT---gtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from CESAR gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacaggcTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACCTCAATTATTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTT---gtaaattcagatatttgggattacacccgtttgctgttattttaagt Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACCTCAATTATTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTTgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCAT-CTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACCTCAATTATTTT-GATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGgtttgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from Pairagon GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCA-TCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACCTCAATTATTTT-GATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTTgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACCTCAATTATTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTT---gtaaattcagatatttgggattacacccgtttgctgttattttaagt Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACCTCAATTATTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTT---gtaaattcagatatttgggattacacccgtttgctgttattttaagt Alignment from GeneWise GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACCTCAATTATTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGG---TTTgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg #### Dak_ID2899_14 --> 0 - 2 Original Alignment CTCTATGGCCTGTTC-CTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa gccttaccacagctagtacaaatttattgggctaagtgctatctcctcagCTACATGGATTGTTCCCTCACTG-TTCAGCCCAACCTCTG------AAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGaagtaagacactctttttgcctcacaacaaaaagtgaggttgtgctatatgc Alignment from CESAR CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa gccttaccacagctagtacaaatttattgggctaagtgctatctcctcagCTACATGGATTGTTCCCTCACTGTTCAGCCCAACCTCTGAAA------ACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGaagtaagacactctttttgcctcacaacaaaaagtgaggttgtgctatatgc Alignment from Spaln_aa2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttaccacagctagtacaaatttattgggctaagtgctatctcctcagCTACATGGATTGTTCCCTCACTGTTCAGCCCAACCTCTG------AAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaagacactctttttgcctcacaacaaaaagtgaggttgtgctatatgc Alignment from Spaln_nt2Genome CTCTATGGCCTGTTCC-TGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttaccacagctagtacaaatttattgggctaagtgctatctcctcagCTACATGGATTGTTCCCTCACTG-TTCAGCCCAACCTCT------GAAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaagacactctttttgcctcacaacaaaaagtgaggttgtgctatatgc Alignment from Pairagon CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttaccacagctagtacaaatttattgggctaagtgctatctcctcagctacatggattgttccctcactgttcag----------------------------CCCAACCTCT------GAAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaagacactctttttgcctcacaacaaaaagtgaggttgtgctatatgc Alignment from Exonerate_protein2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttaccacagctagtacaaatttattgggctaagtgctatctcctcagCTACATGGATTGTTCCCTCACTGTTCAGCCCAACCTCTG------AAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaagacactctttttgcctcacaacaaaaagtgaggttgtgctatatgc Alignment from Exonerate_coding2genome gccttaccacagctagtacaaatttattgggctaagtgctatctcctcagctacatggattgttccctcactgttcagcccaacctctgaaaactgacctgccaacctggtctgctgccatggatgctggcctagactccatgcagaagtaagacactctttttgcctcacaacaaaaagtgaggttgtgctatatgc Alignment from GeneWise CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttaccacagctagtacaaatttattgggctaagtgctatctcctcagCTACATGGATTGTTCCCTCACTGTTCAGCCCAACCTCTGAAA------ACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaagacactctttttgcctcacaacaaaaagtgaggttgtgctatatgc #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGG-GCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg acacatgcatagggaatatagaggttcaacctttgggttttatatctcaggtGTAACATCAAAGCAGGTAGCCTTGGTA---TATCGGATATGTGCCACCCTCATAGGGTCTGAAGAACACCTGAATGCA---GAGAGACGCTGCTGGTG-TGGA------GATTCCATGCACAGCCGCGCTTCTAAGggtaggatttcttcttctagccacacagaccaatcattggaccttgctatc Alignment from CESAR gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGG-GCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg acacatgcatagggaatatagaggttcaacctttgggttttatatctcaggtGTAACATCAAAGCAGGTAGCCTTGGTA---TATCGGATATGTGCCACCCTCATAGGGTCTGAAGAACACCTGAATGCA---GAGAGACGCTGCTGGT-GTGGAGAT------TCCATGCACAGCCGCGCTTCTAAGggtaggatttcttcttctagccacacagaccaatcattggaccttgctatc Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG acacatgcatagggaatatagaggttcaacctttgggttttatatctcagGTGTAACATCAAAGCAGGTAGCCTTGGTATAT---CGGATATGTGCCACCCTCATAGGGTCTGAAGAACACCTGAATGCA---GAGAGACGCTGCTGGTGTGGAGAT------TCCATGCACAGCCGCGCTTCTAAGGgtaggatttcttcttctagccacacagaccaatcattggaccttgctatc Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG acacatgcatagggaatatagaggttcaacctttgggttttatatctcagGTGTAACATCAAAGCAGGTAGC-CT--TGGTATATCGGATATGTGCCACCCTCATAGGGTCTGAAGAACACCTGAATGC-----AGAGAGACGCTGCTGGTGTGGA----GATTCCATGCACAGCCGCGCTTCTAAGGgtaggatttcttcttctagccacacagaccaatcattggaccttgctatc Alignment from Pairagon GTGTAACATCAAAGCAG-----------ATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG acacatgcatagggaatatagaggttcaacctttgggttttatatctcagGTGTAACATCAAAGCAGGTAGCCTTGGTAT--------------ATCGGATATGTGCCACCCTCATAGGGTCTGAAGAACACCTGAATGC-----AGAGAGACGCTGCTGGTGTGGA----GATTCCATGCACAGCCGCGCTTCTAAGGgtaggatttcttcttctagccacacagaccaatcattggaccttgctatc Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG acacatgcatagggaatatagaggttcaacctttgggttttatatctcagGTGTAACATCAAAGCAGGTAGCCTTGGTATAT---CGGATATGTGCCACCCTCATAGGGTCTGAAGAACACCTGAATGCA---GAGAGACGCTGCTGGTGTGGAGAT------TCCATGCACAGCCGCGCTTCTAAGGgtaggatttcttcttctagccacacagaccaatcattggaccttgctatc Alignment from Exonerate_coding2genome acacatgcatagggaatatagaggttcaacctttgggttttatatctcaggtgtaacatcaaagcaggtagccttggtatatcggatatgtgccaccctcatagggtctgaagaacacctgaatgcagagagacgctgctggtgtggagattccatgcacagccgcgcttctaagggtaggatttcttcttctagccacacagaccaatcattggaccttgctatc Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG acacatgcatagggaatatagaggttcaacctttgggttttatatctcagGTGTAACATCAAAGCAGGTAGCCTTGGTATAT---CGGATATGTGCCACCCTCATAGGGTCTGAAGAACACCTGAATGCA---GAGAGACGCTGCTGGTGTGGAGAT------TCCATGCACAGCCGCGCTTCTAAGGgtaggatttcttcttctagccacacagaccaatcattggaccttgctatc #### Ddb1_ID2924_9 --> 0 - 0 Original Alignment CTCAATGTCGACAGCAACGAACAA-GGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaatgggacctgggccatcccacagCTCAATGTTGATAGCAATGAACAACGGGTCCT-TGTAGTGGCAATGGAAACATTCACTAATGTGGGCCCTATTATAGATATGTTTGTTGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagtggcattcctaaagaggggaagaccaggagatataaacatcttta Alignment from CESAR CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaatgggacctgggccatcccacagCTCAATGTTGATAGCAATGAACAACGGGTCCTTGTAGTGGCAATGGAAACATTCACTAATGTGGGCCCTATTATAGATATGTTTGTTGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagtggcattcctaaagaggggaagaccaggagatataaacatcttta Alignment from Spaln_aa2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaatgggacctgggccatcccacagCTCAATGTTGATAGCAATGAACAACGGGTCCTTGTAGTGGCAATGGAAACATTCACTAATGTGGGCCCTATTATAGATATGTTTGTTGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagtggcattcctaaagaggggaagaccaggagatataaacatcttta Alignment from Spaln_nt2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaatgggacctgggccatcccacagCTCAATGTTGATAGCAATGAACAACGGGTCCTTGTAGTGGCAATGGAAACATTCACTAATGTGGGCCCTATTATAGATATGTTTGTTGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagtggcattcctaaagaggggaagaccaggagatataaacatcttta Alignment from Pairagon CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaatgggacctgggccatcccacagCTCAATGTTGATAGCAATGAACAACGGGTCCTTGTAGTGGCAATGGAAACATTCACTAATGTGGGCCCTATTATAGATATGTTTGTTGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagtggcattcctaaagaggggaagaccaggagatataaacatcttta Alignment from Exonerate_protein2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaatgggacctgggccatcccacagCTCAATGTTGATAGCAATGAACAACGGGTCCTTGTAGTGGCAATGGAAACATTCACTAATGTGGGCCCTATTATAGATATGTTTGTTGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagtggcattcctaaagaggggaagaccaggagatataaacatcttta Alignment from Exonerate_coding2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaatgggacctgggccatcccacagCTCAATGTTGATAGCAATGAACAACGGGTCCTTGTAGTGGCAATGGAAACATTCACTAATGTGGGCCCTATTATAGATATGTTTGTTGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagtggcattcctaaagaggggaagaccaggagatataaacatcttta Alignment from GeneWise CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tgtctgtttattcaagtctttagtctaatgggacctgggccatcccacagCTCAATGTTGATAGCAATGAACAACGGGTCCTTGTAGTGGCAATGGAAACATTCACTAATGTGGGCCCTATTATAGATATGTTTGTTGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagtggcattcctaaagaggggaagaccaggagatataaacatcttta #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGAT-GGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg ctatagtgcttattccatggtcaccctattccacccttttcttgttgcagagATCATTCCTCGATCCATATTGATGACCACCTTTGAAGGTGGCCACTACCTCCTTTGTGCCTTGGCAGACCGGGGCTC-TTTCTACTTTGGGCTCAATATTGAGACAggtagccccgtagatgatttgaatgcagatcccagggaggtatgggacctt Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg ctatagtgcttattccatggtcaccctattccacccttttcttgttgcagagATCATTCCTCGATCCATATTGATGACCACCTTTGAAGGTGGCCACTACCTCCTTTGTGCCTTGGCAGACCGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAggtagccccgtagatgatttgaatgcagatcccagggaggtatgggacctt Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG ctatagtgcttattccatggtcaccctattccacccttttcttgttgcagAGATCATTCCTCGATCCATATTGATGACCACCTTTGAAGGTGGCCACTACCTCCTTTGTGCCTTGGCAGACCGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtagccccgtagatgatttgaatgcagatcccagggaggtatgggacctt Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG ctatagtgcttattccatggtcaccctattccacccttttcttgttgcagAGATCATTCCTCGATCCATATTGATGACCACCTTTGAAGGTGGCCACTACCTCCTTTGTGCCTTGGCAGACCGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtagccccgtagatgatttgaatgcagatcccagggaggtatgggacctt Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG ctatagtgcttattccatggtcaccctattccacccttttcttgttgcagAGATCATTCCTCGATCCATATTGATGACCACCTTTGAAGGTGGCCACTACCTCCTTTGTGCCTTGGCAGACCGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtagccccgtagatgatttgaatgcagatcccagggaggtatgggacctt Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG ctatagtgcttattccatggtcaccctattccacccttttcttgttgcagAGATCATTCCTCGATCCATATTGATGACCACCTTTGAAGGTGGCCACTACCTCCTTTGTGCCTTGGCAGACCGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtagccccgtagatgatttgaatgcagatcccagggaggtatgggacctt Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG ctatagtgcttattccatggtcaccctattccacccttttcttgttgcagAGATCATTCCTCGATCCATATTGATGACCACCTTTGAAGGTGGCCACTACCTCCTTTGTGCCTTGGCAGACCGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtagccccgtagatgatttgaatgcagatcccagggaggtatgggacctt Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG ctatagtgcttattccatggtcaccctattccacccttttcttgttgcagAGATCATTCCTCGATCCATATTGATGACCACCTTTGAAGGTGGCCACTACCTCCTTTGTGCCTTGGCAGACCGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtagccccgtagatgatttgaatgcagatcccagggaggtatgggacctt #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGT-CCTCTCAACTCAGATGGCTATCCTGACag aattccaccctattttattttatttccctcgtgcttccctggtgtttcaggtTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCCTCTCAACT-GGATGGCTATCCTGACaggtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag aattccaccctattttattttatttccctcgtgcttccctggtgtttcaggtTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCCTCTCAACTGGATGGCTATCCTGACaggtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCCTCTCAACTGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCCTCTCAACTGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGT-CCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCCTCTCAACT-GGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCCTCTCAACTGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCCTCTCAACTGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCCTCTCAACTGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc #### Ddb1_ID2933_18 --> 1 - 0 Original Alignment gAAGATCTGCTATCAGGAAGTGTCTCAGTGC-TTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG ggtttatcttagtcggggagctataaaaatatgtgttctgttaaaagtaggAAAGTTTGTTATGAGGAAGTTTCCCAGTGCCTTTGGGG-TCTGTCAAGTCGCATTGAGGTTCAAGATACTTGTGGGGGAACTACAGCATTAAAGCCCACTGCCAGTACCCAAgtaagactttgagggtgtagatagtgtcccaatcccttcaaaaattggat Alignment from CESAR gAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG ggtttatcttagtcggggagctataaaaatatgtgttctgttaaaagtaggAAAGTTTGTTATGAGGAAGTTTCCCAGTGCCTTTGGGGTCTGTCAAGTCGCATTGAGGTTCAAGATACTTGTGGGGGAACTACAGCATTAAAGCCCACTGCCAGTACCCAAgtaagactttgagggtgtagatagtgtcccaatcccttcaaaaattggat Alignment from Spaln_aa2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG ggtttatcttagtcggggagctataaaaatatgtgttctgttaaaagtagGAAAGTTTGTTATGAGGAAGTTTCCCAGTGCCTTTGGGGTCTGTCAAGTCGCATTGAGGTTCAAGATACTTGTGGGGGAACTACAGCATTAAAGCCCACTGCCAGTACCCAAgtaagactttgagggtgtagatagtgtcccaatcccttcaaaaattggat Alignment from Spaln_nt2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG ggtttatcttagtcggggagctataaaaatatgtgttctgttaaaagtagGAAAGTTTGTTATGAGGAAGTTTCCCAGTGCCTTTGGGGTCTGTCAAGTCGCATTGAGGTTCAAGATACTTGTGGGGGAACTACAGCATTAAAGCCCACTGCCAGTACCCAAgtaagactttgagggtgtagatagtgtcccaatcccttcaaaaattggat Alignment from Pairagon GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG ggtttatcttagtcggggagctataaaaatatgtgttctgttaaaagtagGAAAGTTTGTTATGAGGAAGTTTCCCAGTGCCTTTGGGGTCTGTCAAGTCGCATTGAGGTTCAAGATACTTGTGGGGGAACTACAGCATTAAAGCCCACTGCCAGTACCCAAgtaagactttgagggtgtagatagtgtcccaatcccttcaaaaattggat Alignment from Exonerate_protein2genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG ggtttatcttagtcggggagctataaaaatatgtgttctgttaaaagtagGAAAGTTTGTTATGAGGAAGTTTCCCAGTGCCTTTGGGGTCTGTCAAGTCGCATTGAGGTTCAAGATACTTGTGGGGGAACTACAGCATTAAAGCCCACTGCCAGTACCCAAgtaagactttgagggtgtagatagtgtcccaatcccttcaaaaattggat Alignment from Exonerate_coding2genome ggtttatcttagtcggggagctataaaaatatgtgttctgttaaaagtaggaaagtttgttatgaggaagtttcccagtgcctttggggtctgtcaagtcgcattgaggttcaagatacttgtgggggaactacagcattaaagcccactgccagtacccaagtaagactttgagggtgtagatagtgtcccaatcccttcaaaaattggat Alignment from GeneWise -AGGAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG ggtttatcttagtcggggagctataaaaatatgtgttctgttaaaagTAGGAAAGTTTGTTATGAGGAAGTTTCCCAGTGCCTTTGGGGTCTGTCAAGTCGCATTGAGGTTCAAGATACTTGTGGGGGAACTACAGCATTAAAGCCCACTGCCAGTACCCAAgtaagactttgagggtgtagatagtgtcccaatcccttcaaaaattggat #### Ddb1_ID2934_19 --> 0 - 1 Original Alignment GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTT-TTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAA---GAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAg ctcgaattgacttatccagattttttgacatagcccctccccctccccagGCTCTGTCTAGCAGTATCAGTTCCAGCAAACTTCTTCT-CATCAGTACAGCCCCTCATGAAATGTCCTTTGGAGAAGAAGAC---GAGGTCCACAATCTCCTTATCAATGACCAACATACATTTGAGtgtaaacaatgaccctttggggttaaaggcttggttgtagatctacaggtg Alignment from CESAR GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAg ctcgaattgacttatccagattttttgacatagcccctccccctccccagGCTCTGTCTAGCAGTATCAGTTCCAGCAAACTTCTTCTCATCAGTACAGCCCCTCATGAAATGTCCTTTGGAGAAGAAGACGAGGTCCACAATCTCCTTATCAATGACCAACATACATTTGAGtgtaaacaatgaccctttggggttaaaggcttggttgtagatctacaggtg Alignment from Spaln_aa2Genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ctcgaattgacttatccagattttttgacatagcccctccccctccccagGCTCTGTCTAGCAGTATCAGTTCCAGCAAACTTCTTCTCATCAGTACAGCCCCTCATGAAATGTCCTTTGGAGAAGAAGACGAGGTCCACAATCTCCTTATCAATGACCAACATACATTTGAGTgtaaacaatgaccctttggggttaaaggcttggttgtagatctacaggtg Alignment from Spaln_nt2Genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ctcgaattgacttatccagattttttgacatagcccctccccctccccagGCTCTGTCTAGCAGTATCAGTTCCAGCAAACTTCTTCTCATCAGTACAGCCCCTCATGAAATGTCCTTTGGAGAAGAAGACGAGGTCCACAATCTCCTTATCAATGACCAACATACATTTGAGTgtaaacaatgaccctttggggttaaaggcttggttgtagatctacaggtg Alignment from Pairagon GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ctcgaattgacttatccagattttttgacatagcccctccccctccccagGCTCTGTCTAGCAGTATCAGTTCCAGCAAACTTCTTCTCATCAGTACAGCCCCTCATGAAATGTCCTTTGGAGAAGAAGACGAGGTCCACAATCTCCTTATCAATGACCAACATACATTTGAGTgtaaacaatgaccctttggggttaaaggcttggttgtagatctacaggtg Alignment from Exonerate_protein2genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ctcgaattgacttatccagattttttgacatagcccctccccctccccagGCTCTGTCTAGCAGTATCAGTTCCAGCAAACTTCTTCTCATCAGTACAGCCCCTCATGAAATGTCCTTTGGAGAAGAAGACGAGGTCCACAATCTCCTTATCAATGACCAACATACATTTGAGTgtaaacaatgaccctttggggttaaaggcttggttgtagatctacaggtg Alignment from Exonerate_coding2genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ctcgaattgacttatccagattttttgacatagcccctccccctccccagGCTCTGTCTAGCAGTATCAGTTCCAGCAAACTTCTTCTCATCAGTACAGCCCCTCATGAAATGTCCTTTGGAGAAGAAGACGAGGTCCACAATCTCCTTATCAATGACCAACATACATTTGAGTgtaaacaatgaccctttggggttaaaggcttggttgtagatctacaggtg Alignment from GeneWise GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ctcgaattgacttatccagattttttgacatagcccctccccctccccagGCTCTGTCTAGCAGTATCAGTTCCAGCAAACTTCTTCTCATCAGTACAGCCCCTCATGAAATGTCCTTTGGAGAAGAAGACGAGGTCCACAATCTCCTTATCAATGACCAACATACATTTGAGTgtaaacaatgaccctttggggttaaaggcttggttgtagatctacaggtg #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCA-GAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg acagccagaacttaggagatagcagatccctgacctctgcttctgtgcagtgCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCCATGGTGTATCCAGAAGAGGCACGAGCCCAAGC-AGGTCATATTGTGGTTTTCCAATATTCTGATggtaagttgatgaatttgaggctccttttttatttttagagacctgtttgt Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg acagccagaacttaggagatagcagatccctgacctctgcttctgtgcagtgCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCCATGGTGTATCCAGAAGAGGCACGAGCCCAAGCAGGTCATATTGTGGTTTTCCAATATTCTGATggtaagttgatgaatttgaggctccttttttatttttagagacctgtttgt Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG acagccagaacttaggagatagcagatccctgacctctgcttctgtgcagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCCATGGTGTATCCAGAAGAGGCACGAGCCCAAGCAGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgaatttgaggctccttttttatttttagagacctgtttgt Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCA-GAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG acagccagaacttaggagatagcagatccctgacctctgcttctgtgcagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCCATGGTGTATCCAGAAGAGGCACGAGCCCAAGCA-GGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgaatttgaggctccttttttatttttagagacctgtttgt Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCA-GAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG acagccagaacttaggagatagcagatccctgacctctgcttctgtgcagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCCATGGTGTATCCAGAAGAGGCACGAGCCCAAGCA-GGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgaatttgaggctccttttttatttttagagacctgtttgt Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG acagccagaacttaggagatagcagatccctgacctctgcttctgtgcagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCCATGGTGTATCCAGAAGAGGCACGAGCCCAAGCAGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgaatttgaggctccttttttatttttagagacctgtttgt Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG acagccagaacttaggagatagcagatccctgacctctgcttctgtgcagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCCATGGTGTATCCAGAAGAGGCACGAGCCCAAGCAGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgaatttgaggctccttttttatttttagagacctgtttgt Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG acagccagaacttaggagatagcagatccctgacctctgcttctgtgcagTGCTTCATGCCCACCAATTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGTTAAGGATCCCAACACTTACTTCATTGTTGGTACAGCCATGGTGTATCCAGAAGAGGCACGAGCCCAAGCAGGTCATATTGTGGTTTTCCAATATTCTGATGgtaagttgatgaatttgaggctccttttttatttttagagacctgtttgt #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATG-CAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg taaggcttggtagaggggggtgctctggcacctctcaacttgtgttgcagtGCCGCAACAACTGTTGAGGATCGTCAGCATTTACAGGAAATAGTCCTTTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCCAGTTATGCAAGAACCTGG-TGAGGCCTCCACTCCTACGGCTCAGGGGTCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtaaggactgtgggatggcttgcttctgcaaaaaagcttgcttctgcaaa Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg taaggcttggtagaggggggtgctctggcacctctcaacttgtgttgcagtGCCGCAACAACTGTTGAGGATCGTCAGCATTTACAGGAAATAGTCCTTTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCCAGTTATGCAAGAACCTGGTGAGGCCTCCACTCCTACGGCTCAGGGGTCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtaaggactgtgggatggcttgcttctgcaaaaaagcttgcttctgcaaa Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggggtgctctggcacctctcaacttgtgttgcagTGCCGCAACAACTGTTGAGGATCGTCAGCATTTACAGGAAATAGTCCTTTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCCAGTTATGCAAGAACCTGGTGAGGCCTCCACTCCTACGGCTCAGGGGTCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaaggactgtgggatggcttgcttctgcaaaaaagcttgcttctgcaaa Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggggtgctctggcacctctcaacttgtgttgcagTGCCGCAACAACTGTTGAGGATCGTCAGCATTTACAGGAAATAGTCCTTTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCCAGTTATGCAAGAACCTGGTGAGGCCTCCACTCCTACGGCTCAGGGGTCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaaggactgtgggatggcttgcttctgcaaaaaagcttgcttctgcaaa Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggggtgctctggcacctctcaacttgtgttgcagTGCCGCAACAACTGTTGAGGATCGTCAGCATTTACAGGAAATAGTCCTTTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCCAGTTATGCAAGAACCTGGTGAGGCCTCCACTCCTACGGCTCAGGGGTCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaaggactgtgggatggcttgcttctgcaaaaaagcttgcttctgcaaa Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggggtgctctggcacctctcaacttgtgttgcagTGCCGCAACAACTGTTGAGGATCGTCAGCATTTACAGGAAATAGTCCTTTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCCAGTTATGCAAGAACCTGGTGAGGCCTCCACTCCTACGGCTCAGGGGTCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaaggactgtgggatggcttgcttctgcaaaaaagcttgcttctgcaaa Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAGGGCTGGTGA taaggcttggtagaggggggtgctctggcacctctcaacttgtgttgcagTGCCGCAACAACTGTTGAGGATCGTCAGCATTTACAGGAAATAGTCCTTTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCCAGTTATGCAAGAACCTGGTGAGGCCTCCACTCCTACGGCTCAGGGGTCAGTCCTTTTTGGCACAGTCAATGTCATGATAGGTAAGGACTgtgggatggcttgcttctgcaaaaaagcttgcttctgcaaa Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggggtgctctggcacctctcaacttgtgttgcagTGCCGCAACAACTGTTGAGGATCGTCAGCATTTACAGGAAATAGTCCTTTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCCAGTTATGCAAGAACCTGGTGAGGCCTCCACTCCTACGGCTCAGGGGTCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaaggactgtgggatggcttgcttctgcaaaaaagcttgcttctgcaaa #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGAT-GGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcaggcATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATCGGATTTC-CAGA---ACTGCATTGGCATCAAAGATTTATCATACTAAAggtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcaggcATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATCGGATTTCCAGA---ACTGCATTGGCATCAAAGATTTATCATACTAAAggtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATCGGATTTCC---AGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGAT-GGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATCGGATTTCC----AGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGAT-GGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATCGGATTTCC----AGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATCGGATT---TCCAGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATCGGATT---TCCAGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATCGGATT---TCCAGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGAT-GGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagccAAGAAAGGACCTGATCGGATTGGCCC-GCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagccAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Pairagon CCAAGAAAGGACCTGAT-GGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATCGGATTGGCCC-GCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAA-GAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga ttgggtccatggtcaagttctaatttagtttcgcctcctcctctctgcagATCAAGAGCTGGTACCGGAGTGGAGAGACATGGGACAGTGAATCTAGCACAATTGCCTCACGGTATCAACGAGTGTC-TGCCAAGAGTATAGGCCTGTATCTCTGT---ACCCCCCAAGTGTTAgagtaaggaaactcttcaacttcatgggattactccttttgtgtcctctata Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga ttgggtccatggtcaagttctaatttagtttcgcctcctcctctctgcagATCAAGAGCTGGTACCGGAGTGGAGAGACATGGGACAGTGAATCTAGCACAATTGCCTCACGGTATCAACGAGTGTCTGCCAAGAGTATAGGCCTGTATCTCTGT---ACCCCCCAAGTGTTAgagtaaggaaactcttcaacttcatgggattgttatttcttttttcttttta Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA ttgggtccatggtcaagttctaatttagtttcgcctcctcctctctgcagATCAAGAGCTGGTACCGGAGTGGAGAGACATGGGACAGTGAATCTAGCACAATTGCCTCACGGTATCAACGAGTGTCTGCCAAGAGTATAGGCCTGTATCTCTGT---ACCCCCCAAGTGTTAGAgtaaggaaactcttcaacttcatgggattactccttttgtgtcctctata Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAA-GAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA ttgggtccatggtcaagttctaatttagtttcgcctcctcctctctgcagATCAAGAGCTGGTACCGGAGTGGAGAGACATGGGACAGTGAATCTAGCACAATTGCCTCACGGTATCAACGAGTGTC-TGCCAAGAGTATAGGCCTGTATCTCTGT---ACCCCCCAAGTGTTAGAgtaaggaaactcttcaacttcatgggattactccttttgtgtcctctata Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGG---------------GCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA ttgggtccatggtcaagttctaatttagtttcgcctcctcctctctgcagATCAAGAGCTGGTACCGGAGTGGAGAGACATGGGACAGTGAATCTAGCACAATTGCCTC---------------ACGGTATCAACGAGTGTCTGCCAAGAGTATAGGCCTGTATCTCTGT---ACCCCCCAAGTGTTAGAgtaaggaaactcttcaacttcatgggattactccttttgtgtcctctata Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA ttgggtccatggtcaagttctaatttagtttcgcctcctcctctctgcagATCAAGAGCTGGTACCGGAGTGGAGAGACATGGGACAGTGAATCTAGCACAATTGCCTCACGGTATCAACGAGTGTCTGCCAAGAGTATAGGCCTGTATCTCTGT---ACCCCCCAAGTGTTAGAgtaaggaaactcttcaacttcatgggattactccttttgtgtcctctata Alignment from Exonerate_coding2genome ttgggtccatggtcaagttctaatttagtttcgcctcctcctctctgcagatcaagagctggtaccggagtggagagacatgggacagtgaatctagcacaattgcctcacggtatcaacgagtgtctgccaagagtataggcctgtatctctgtaccccccaagtgttagagtaaggaaactcttcaacttcatgggattactccttttgtgtcctctata Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA ttgggtccatggtcaagttctaatttagtttcgcctcctcctctctgcagATCAAGAGCTGGTACCGGAGTGGAGAGACATGGGACAGTGAATCTAGCACAATTGCCTCACGGTATCAACGAGTGTCTGCCAAGAGTATAGGCCTGTATCTCTGT---ACCCCCCAAGTGTTAGAgtaaggaaactcttcaacttcatgggattactccttttgtgtcctctata #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAG-TACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gaatatgtggatggatcaaaatgaagatccccaccacccccataccccagGCGTATGCAGCCAACTGCTACCAGAAGCAGATGCTGTCCCAGCTATGTGG-AAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCAGTTGTAAAGaggtaggtcatcactcaatctttccattcctggtttgttagcaagggtacaa Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gaatatgtggatggatcaaaatgaagatccccaccacccccataccccagGCGTATGCAGCCAACTGCTACCAGAAGCAGATGCTGTCCCAGCTATGTGGAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCAGTTGTAAAGaggtaggtcatcactcaatctttccattcctggtttgttagcaagggtacaa Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatggatcaaaatgaagatccccaccacccccataccccagGCGTATGCAGCCAACTGCTACCAGAAGCAGATGCTGTCCCAGCTATGTGGAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCAGTTGTAAAGAGgtaggtcatcactcaatctttccattcctggtttgttagcaagggtacaa Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAG-TACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatggatcaaaatgaagatccccaccacccccataccccagGCGTATGCAGCCAACTGCTACCAGAAGCAGATGCTGTCCCAGCTATGTGGA-AGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCAGTTGTAAAGAGgtaggtcatcactcaatctttccattcctggtttgttagcaagggtacaa Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAG-TACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatggatcaaaatgaagatccccaccacccccataccccagGCGTATGCAGCCAACTGCTACCAGAAGCAGATGCTGTCCCAGCTATGTGGA-AGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCAGTTGTAAAGAGgtaggtcatcactcaatctttccattcctggtttgttagcaagggtacaa Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatggatcaaaatgaagatccccaccacccccataccccagGCGTATGCAGCCAACTGCTACCAGAAGCAGATGCTGTCCCAGCTATGTGGAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCAGTTGTAAAGAGgtaggtcatcactcaatctttccattcctggtttgttagcaagggtacaa Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatggatcaaaatgaagatccccaccacccccataccccagGCGTATGCAGCCAACTGCTACCAGAAGCAGATGCTGTCCCAGCTATGTGGAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCAGTTGTAAAGAGgtaggtcatcactcaatctttccattcctggtttgttagcaagggtacaa Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gaatatgtggatggatcaaaatgaagatccccaccacccccataccccagGCGTATGCAGCCAACTGCTACCAGAAGCAGATGCTGTCCCAGCTATGTGGAAGCTTCACTGAAGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCAGTTGTAAAGAGgtaggtcatcactcaatctttccattcctggtttgttagcaagggtacaa #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTG-GAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct gttattctgaggtggagttattccacaccagtggtgcttctctgttgcagcaCAGGCACTTGAGCTTTTCTTACGAGTCCTTGC-TAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACttgtaagcattcccaacctgctagcgtgcttaacagtatggggatgttccag Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct gttattctgaggtggagttattccacaccagtggtgcttctctgttgcagcaCAGGCACTTGAGCTTTTCTTACGAGTCCTTGCTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACttgtaagcattcccaacctgctagcgtgcttaacagtatggggatgttccag Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggagttattccacaccagtggtgcttctctgttgcagCACAGGCACTTGAGCTTTTCTTACGAGTCCTTGCTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaagcattcccaacctgctagcgtgcttaacagtatggggatgttccag Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTG-GAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggagttattccacaccagtggtgcttctctgttgcagCACAGGCACTTGAGCTTTTCTTACGAGTCCTTGCT-AAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaagcattcccaacctgctagcgtgcttaacagtatggggatgttccag Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTG-GAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggagttattccacaccagtggtgcttctctgttgcagCACAGGCACTTGAGCTTTTCTTACGAGTCCTTGCT-AAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaagcattcccaacctgctagcgtgcttaacagtatggggatgttccag Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggagttattccacaccagtggtgcttctctgttgcagCACAGGCACTTGAGCTTTTCTTACGAGTCCTTGCTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaagcattcccaacctgctagcgtgcttaacagtatggggatgttccag Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggagttattccacaccagtggtgcttctctgttgcagCACAGGCACTTGAGCTTTTCTTACGAGTCCTTGCTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaagcattcccaacctgctagcgtgcttaacagtatggggatgttccag Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT gttattctgaggtggagttattccacaccagtggtgcttctctgttgcagCACAGGCACTTGAGCTTTTCTTACGAGTCCTTGCTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGATCAACTCTCACTTgtaagcattcccaacctgctagcgtgcttaacagtatggggatgttccag #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACC-TTGGGCATTATGCACCACAACAAACAG cctgagactaagttgttatgtactaaatgactctgtgcttgtcttgtcagtgAGCAATGAGGAACTGCGAGGAAGCGCACCAGAGGCAGCAGCTCAGATAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGCTCCACCAGCAAGTACCTGGGTATTCCCCACCCTTGGGAA-CATGCACCACAACAAACAGgtatgctaattatcagttgagaatggtaagtacacattttgtgagtcatt Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG cctgagactaagttgttatgtactaaatgactctgtgcttgtcttgtcagtgAGCAATGAGGAACTGCGAGGAAGCGCACCAGAGGCAGCAGCTCAGATAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGCTCCACCAGCAAGTACCTGGGTATTCCCCACCCTTGGGAACATGCACCACAACAAACAGgtatgctaattatcagttgagaatggtaagtacacattttgtgagtcatt Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG cctgagactaagttgttatgtactaaatgactctgtgcttgtcttgtcagTGAGCAATGAGGAACTGCGAGGAAGCGCACCAGAGGCAGCAGCTCAGATAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGCTCCACCAGCAAGTACCTGGGTATTCCCCACCCTTGGGAACATGCACCACAACAAACAGgtatgctaattatcagttgagaatggtaagtacacattttgtgagtcatt Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG cctgagactaagttgttatgtactaaatgactctgtgcttgtcttgtcagTGAGCAATGAGGAACTGCGAGGAAGCGCACCAGAGGCAGCAGCTCAGATAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGCTCCACCAGCAAGTACCTGGGTATTCCCCACCCTTGGGAACATGCACCACAACAAACAGgtatgctaattatcagttgagaatggtaagtacacattttgtgagtcatt Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG cctgagactaagttgttatgtactaaatgactctgtgcttgtcttgtcagTGAGCAATGAGGAACTGCGAGGAAGCGCACCAGAGGCAGCAGCTCAGATAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGCTCCACCAGCAAGTACCTGGGTATTCCCCACCCTTGGGAACATGCACCACAACAAACAGgtatgctaattatcagttgagaatggtaagtacacattttgtgagtcatt Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG cctgagactaagttgttatgtactaaatgactctgtgcttgtcttgtcagTGAGCAATGAGGAACTGCGAGGAAGCGCACCAGAGGCAGCAGCTCAGATAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGCTCCACCAGCAAGTACCTGGGTATTCCCCACCCTTGGGAACATGCACCACAACAAACAGgtatgctaattatcagttgagaatggtaagtacacattttgtgagtcatt Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG cctgagactaagttgttatgtactaaatgactctgtgcttgtcttgtcagTGAGCAATGAGGAACTGCGAGGAAGCGCACCAGAGGCAGCAGCTCAGATAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGCTCCACCAGCAAGTACCTGGGTATTCCCCACCCTTGGGAACATGCACCACAACAAACAGgtatgctaattatcagttgagaatggtaagtacacattttgtgagtcatt Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG cctgagactaagttgttatgtactaaatgactctgtgcttgtcttgtcagTGAGCAATGAGGAACTGCGAGGAAGCGCACCAGAGGCAGCAGCTCAGATAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGCTCCACCAGCAAGTACCTGGGTATTCCCCACCCTTGGGAACATGCACCACAACAAACAGgtatgctaattatcagttgagaatggtaagtacacattttgtgagtcatt #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTG-AGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtatgggaataaagagttggggaggacaacggcttgttctggcttttaggtATGTTCCAACGGCTTGACAAGCTGCCGGAAGA-TGCCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAACTTGCCTATCCAgtaagtcctcaatatgagagattcatggtgggggcttaaaagttttgaaa Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtatgggaataaagagttggggaggacaacggcttgttctggcttttaggtATGTTCCAACGGCTTGACAAGCTGCCGGAAGATGCCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAACTTGCCTATCCAgtaagtcctcaatatgagagattcatggtgggggcttaaaagttttgaaa Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtatgggaataaagagttggggaggacaacggcttgttctggcttttagGTATGTTCCAACGGCTTGACAAGCTGCCGGAAGATGCCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAACTTGCCTATCCAgtaagtcctcaatatgagagattcatggtgggggcttaaaagttttgaaa Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtatgggaataaagagttggggaggacaacggcttgttctggcttttagGTATGTTCCAACGGCTTGACAAGCTGCCGGAAGATGCCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAACTTGCCTATCCAgtaagtcctcaatatgagagattcatggtgggggcttaaaagttttgaaa Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtatgggaataaagagttggggaggacaacggcttgttctggcttttagGTATGTTCCAACGGCTTGACAAGCTGCCGGAAGATGCCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAACTTGCCTATCCAgtaagtcctcaatatgagagattcatggtgggggcttaaaagttttgaaa Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtatgggaataaagagttggggaggacaacggcttgttctggcttttagGTATGTTCCAACGGCTTGACAAGCTGCCGGAAGATGCCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAACTTGCCTATCCAgtaagtcctcaatatgagagattcatggtgggggcttaaaagttttgaaa Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtatgggaataaagagttggggaggacaacggcttgttctggcttttagGTATGTTCCAACGGCTTGACAAGCTGCCGGAAGATGCCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAACTTGCCTATCCAgtaagtcctcaatatgagagattcatggtgggggcttaaaagttttgaaa Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtatgggaataaagagttggggaggacaacggcttgttctggcttttagGTATGTTCCAACGGCTTGACAAGCTGCCGGAAGATGCCTTTGCTAGTGTTATACTCTTTGGAACAAATAACAGCAGTTCTCTTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAACTTGCCTATCCAgtaagtcctcaatatgagagattcatggtgggggcttaaaagttttgaaa #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGT-GAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg gatacatccaagttggttggctaggctacaacctctgcctctcctcacagacATTGATGAGTGCCGTTACCACTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCGTTCCGATGTCAATGTCGAGC-AGGTTTCCAATTAGGCCCTAACATTCGTTCTTGTGTGggtaaaacagcgtgtcccaaaggtctttaacctttgagtggaaccactatg Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg gatacatccaagttggttggctaggctacaacctctgcctctcctcacagacATTGATGAGTGCCGTTACCACTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCGTTCCGATGTCAATGTCGAGCAGGTTTCCAATTAGGCCCTAACATTCGTTCTTGTGTGggtaaaacagcgtgtcccaaaggtctttaacctttgagtggaaccactatg Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttggttggctaggctacaacctctgcctctcctcacagACATTGATGAGTGCCGTTACCACTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCGTTCCGATGTCAATGTCGAGCAGGTTTCCAATTAGGCCCTAACATTCGTTCTTGTGTGGgtaaaacagcgtgtcccaaaggtctttaacctttgagtggaaccactatg Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttggttggctaggctacaacctctgcctctcctcacagACATTGATGAGTGCCGTTACCACTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCGTTCCGATGTCAATGTCGAGCAGGTTTCCAATTAGGCCCTAACATTCGTTCTTGTGTGGgtaaaacagcgtgtcccaaaggtctttaacctttgagtggaaccactatg Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttggttggctaggctacaacctctgcctctcctcacagACATTGATGAGTGCCGTTACCACTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCGTTCCGATGTCAATGTCGAGCAGGTTTCCAATTAGGCCCTAACATTCGTTCTTGTGTGGgtaaaacagcgtgtcccaaaggtctttaacctttgagtggaaccactatg Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttggttggctaggctacaacctctgcctctcctcacagACATTGATGAGTGCCGTTACCACTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCGTTCCGATGTCAATGTCGAGCAGGTTTCCAATTAGGCCCTAACATTCGTTCTTGTGTGGgtaaaacagcgtgtcccaaaggtctttaacctttgagtggaaccactatg Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttggttggctaggctacaacctctgcctctcctcacagACATTGATGAGTGCCGTTACCACTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCGTTCCGATGTCAATGTCGAGCAGGTTTCCAATTAGGCCCTAACATTCGTTCTTGTGTGGgtaaaacagcgtgtcccaaaggtctttaacctttgagtggaaccactatg Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttggttggctaggctacaacctctgcctctcctcacagACATTGATGAGTGCCGTTACCACTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCGTTCCGATGTCAATGTCGAGCAGGTTTCCAATTAGGCCCTAACATTCGTTCTTGTGTGGgtaaaacagcgtgtcccaaaggtctttaacctttgagtggaaccactatg #### Efemp2_ID1033_6 --> 2 - 1 Original Alignment atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGG-GATGGCTTCTCCTGCAGCg tgaaatccaaaactttcactttctatctctcttttgtgttgtctgtgtagatGTTAATGAATGTGACATGGGAGCACCTTGTGAGCAGCGTTGTTTCAATTCATATGGGACCTTTTTGTGCCGGTGTAACCAGGGCTATGAGCTACACTGGCGATG-CTTCTCCTGCAGTggtaccagtcaactgagatatcccctatatgctacacaacataaatttgtt Alignment from CESAR atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg tgaaatccaaaactttcactttctatctctcttttgtgttgtctgtgtagatGTTAATGAATGTGACATGGGAGCACCTTGTGAGCAGCGTTGTTTCAATTCATATGGGACCTTTTTGTGCCGGTGTAACCAGGGCTATGAGCTACACTGGCGATGCTTCTCCTGCAGTggtaccagtcaactgagatatcccctatatgctacacaacataaatttgtt Alignment from Spaln_aa2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tgaaatccaaaactttcactttctatctctcttttgtgttgtctgtgtagATGTTAATGAATGTGACATGGGAGCACCTTGTGAGCAGCGTTGTTTCAATTCATATGGGACCTTTTTGTGCCGGTGTAACCAGGGCTATGAGCTACACTGGCGATGCTTCTCCTGCAGTGgtaccagtcaactgagatatcccctatatgctacacaacataaatttgtt Alignment from Spaln_nt2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tgaaatccaaaactttcactttctatctctcttttgtgttgtctgtgtagATGTTAATGAATGTGACATGGGAGCACCTTGTGAGCAGCGTTGTTTCAATTCATATGGGACCTTTTTGTGCCGGTGTAACCAGGGCTATGAGCTACACTGGCGATGCTTCTCCTGCAGTGgtaccagtcaactgagatatcccctatatgctacacaacataaatttgtt Alignment from Pairagon ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tgaaatccaaaactttcactttctatctctcttttgtgttgtctgtgtagATGTTAATGAATGTGACATGGGAGCACCTTGTGAGCAGCGTTGTTTCAATTCATATGGGACCTTTTTGTGCCGGTGTAACCAGGGCTATGAGCTACACTGGCGATGCTTCTCCTGCAGTGgtaccagtcaactgagatatcccctatatgctacacaacataaatttgtt Alignment from Exonerate_protein2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tgaaatccaaaactttcactttctatctctcttttgtgttgtctgtgtagATGTTAATGAATGTGACATGGGAGCACCTTGTGAGCAGCGTTGTTTCAATTCATATGGGACCTTTTTGTGCCGGTGTAACCAGGGCTATGAGCTACACTGGCGATGCTTCTCCTGCAGTGgtaccagtcaactgagatatcccctatatgctacacaacataaatttgtt Alignment from Exonerate_coding2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tgaaatccaaaactttcactttctatctctcttttgtgttgtctgtgtagATGTTAATGAATGTGACATGGGAGCACCTTGTGAGCAGCGTTGTTTCAATTCATATGGGACCTTTTTGTGCCGGTGTAACCAGGGCTATGAGCTACACTGGCGATGCTTCTCCTGCAGTGgtaccagtcaactgagatatcccctatatgctacacaacataaatttgtt Alignment from GeneWise ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tgaaatccaaaactttcactttctatctctcttttgtgttgtctgtgtagATGTTAATGAATGTGACATGGGAGCACCTTGTGAGCAGCGTTGTTTCAATTCATATGGGACCTTTTTGTGCCGGTGTAACCAGGGCTATGAGCTACACTGGCGATGCTTCTCCTGCAGTGgtaccagtcaactgagatatcccctatatgctacacaacataaatttgtt #### Efemp2_ID1036_9 --> 1 - 0 Original Alignment cCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGT-TCTGGAAACACACAGGGGGACTTCTACATTAGG catggtaactaaggccttacctttactttctcttccctctgtgttaacagtCGTTGCCTCTGCCCTGCTTCTATCCCCCTCTGTCGAGATCAGCCTACATCTATTGTCCACCATTATATGAGTATCACTTCAGAACACAGTGTCCCTGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGGGCATACAATGCTTTTCAGATCTGCCTCTGGCATCA-CCAGGGGGAATTCTATATTAGGgtaagttcacattgcatttggtgtttgctaaacaactttgggacatatgg Alignment from CESAR cCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG catggtaactaaggccttacctttactttctcttccctctgtgttaacagtCGTTGCCTCTGCCCTGCTTCTATCCCCCTCTGTCGAGATCAGCCTACATCTATTGTCCACCATTATATGAGTATCACTTCAGAACACAGTGTCCCTGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGGGCATACAATGCTTTTCAGATCTGCCTCTGGCATCACCAGGGGGAATTCTATATTAGGgtaagttcacattgcatttggtgtttgctaaacaactttgggacatatgg Alignment from Spaln_aa2Genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG catggtaactaaggccttacctttactttctcttccctctgtgttaacagTCGTTGCCTCTGCCCTGCTTCTATCCCCCTCTGTCGAGATCAGCCTACATCTATTGTCCACCATTATATGAGTATCACTTCAGAACACAGTGTCCCTGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGGGCATACAATGCTTTTCAGATCTGCCTCTGGCATCACCAGGGGGAATTCTATATTAGGgtaagttcacattgcatttggtgtttgctaaacaactttgggacatatgg Alignment from Spaln_nt2Genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGT-TCTGGAAACACACAGGGGGACTTCTACATTAGG catggtaactaaggccttacctttactttctcttccctctgtgttaacagTCGTTGCCTCTGCCCTGCTTCTATCCCCCTCTGTCGAGATCAGCCTACATCTATTGTCCACCATTATATGAGTATCACTTCAGAACACAGTGTCCCTGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGGGCATACAATGCTTTTCAGATCTGCCTCTGGCATCAC-CAGGGGGAATTCTATATTAGGgtaagttcacattgcatttggtgtttgctaaacaactttgggacatatgg Alignment from Pairagon CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCG-TTCTGGAAACACACAGGGGGACTTCTACATTAGG catggtaactaaggccttacctttactttctcttccctctgtgttaacagTCGTTGCCTCTGCCCTGCTTCTATCCCCCTCTGTCGAGATCAGCCTACATCTATTGTCCACCATTATATGAGTATCACTTCAGAACACAGTGTCCCTGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGGGCATACAATGCTTTTCAGATCTGCCTCTGGCATCAC-CAGGGGGAATTCTATATTAGGgtaagttcacattgcatttggtgtttgctaaacaactttgggacatatgg Alignment from Exonerate_protein2genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG catggtaactaaggccttacctttactttctcttccctctgtgttaacagTCGTTGCCTCTGCCCTGCTTCTATCCCCCTCTGTCGAGATCAGCCTACATCTATTGTCCACCATTATATGAGTATCACTTCAGAACACAGTGTCCCTGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGGGCATACAATGCTTTTCAGATCTGCCTCTGGCATCACCAGGGGGAATTCTATATTAGGgtaagttcacattgcatttggtgtttgctaaacaactttgggacatatgg Alignment from Exonerate_coding2genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG catggtaactaaggccttacctttactttctcttccctctgtgttaacagTCGTTGCCTCTGCCCTGCTTCTATCCCCCTCTGTCGAGATCAGCCTACATCTATTGTCCACCATTATATGAGTATCACTTCAGAACACAGTGTCCCTGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGGGCATACAATGCTTTTCAGATCTGCCTCTGGCATCACCAGGGGGAATTCTATATTAGGgtaagttcacattgcatttggtgtttgctaaacaactttgggacatatgg Alignment from GeneWise CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG catggtaactaaggccttacctttactttctcttccctctgtgttaacagTCGTTGCCTCTGCCCTGCTTCTATCCCCCTCTGTCGAGATCAGCCTACATCTATTGTCCACCATTATATGAGTATCACTTCAGAACACAGTGTCCCTGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGGGCATACAATGCTTTTCAGATCTGCCTCTGGCATCACCAGGGGGAATTCTATATTAGGgtaagttcacattgcatttggtgtttgctaaacaactttgggacatatgg #### Ehbp1l1_ID1220_15 --> 0 - 1 Original Alignment CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAA-CAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg tgaggtttaggtgaggcaacctgtcctcccacctgcccacacctgcctagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACCAGG-ACAGGTTGATGGCAGGGCCCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAggtatgcccccctagtttcatctgtgcttaaaacccaatacaattgagaca Alignment from CESAR CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg tgaggtttaggtgaggcaacctgtcctcccacctgcccacacctgcctagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACCAGGACAGGTTGATGGCAGGGCCCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAggtatgcccccctagtttcatctgtgcttaaaacccaatacaattgagaca Alignment from Spaln_aa2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tgaggtttaggtgaggcaacctgtcctcccacctgcccacacctgcctagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACCAGGACAGGTTGATGGCAGGGCCCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtatgcccccctagtttcatctgtgcttaaaacccaatacaattgagaca Alignment from Spaln_nt2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tgaggtttaggtgaggcaacctgtcctcccacctgcccacacctgcctagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACCAGGACAGGTTGATGGCAGGGCCCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtatgcccccctagtttcatctgtgcttaaaacccaatacaattgagaca Alignment from Pairagon CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tgaggtttaggtgaggcaacctgtcctcccacctgcccacacctgcctagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACCAGGACAGGTTGATGGCAGGGCCCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtatgcccccctagtttcatctgtgcttaaaacccaatacaattgagaca Alignment from Exonerate_protein2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tgaggtttaggtgaggcaacctgtcctcccacctgcccacacctgcctagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACCAGGACAGGTTGATGGCAGGGCCCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtatgcccccctagtttcatctgtgcttaaaacccaatacaattgagaca Alignment from Exonerate_coding2genome tgaggtttaggtgaggcaacctgtcctcccacctgcccacacctgcctagcatcggttacaggacacaagccagtatgtgtgtgcagagcaacaagcccttgagcaggaaccaggacaggttgatggcagggcccctgaagtgcagagacaatttcggagcctgatggaatcaggtatgcccccctagtttcatctgtgcttaaaacccaatacaattgagaca Alignment from GeneWise CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tgaggtttaggtgaggcaacctgtcctcccacctgcccacacctgcctagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACCAGGACAGGTTGATGGCAGGGCCCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtatgcccccctagtttcatctgtgcttaaaacccaatacaattgagaca #### Ehbp1l1_ID1221_14 --> 2 - 0 Original Alignment gtGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tcagcagtggcaggatgggaatggtgatttgccactctttccttactcaggtGGGCCACCACCTACTGAAAAGCTCATCTC-TAGCTTGGAAGAAGAGACAGGGCTGgtgagtactgctacattgattggtggtccttgctttcctgaggtttaggt Alignment from CESAR gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tcagcagtggcaggatgggaatggtgatttgccactctttccttactcaggtGGGCCACCACCTACTGAAAAGCTCATCTCTAGCTTGGAAGAAGAGACAGGGCTGgtgagtactgctacattgattggtggtccttgctttcctgaggtttaggt Alignment from Spaln_aa2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tcagcagtggcaggatgggaatggtgatttgccactctttccttactcagGTGGGCCACCACCTACTGAAAAGCTCATCTCTAGCTTGGAAGAAGAGACAGGGCTGgtgagtactgctacattgattggtggtccttgctttcctgaggtttaggt Alignment from Spaln_nt2Genome GTGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tcagcagtggcaggatgggaatggtgatttgccactctttccttactcagGTGGGCCACCACCTACTGAAAAGCTCATC-TCTAGCTTGGAAGAAGAGACAGGGCTGgtgagtactgctacattgattggtggtccttgctttcctgaggtttaggt Alignment from Pairagon GTGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tcagcagtggcaggatgggaatggtgatttgccactctttccttactcagGTGGGCCACCACCTACTGAAAAGCTCATC-TCTAGCTTGGAAGAAGAGACAGGGCTGgtgagtactgctacattgattggtggtccttgctttcctgaggtttaggt Alignment from Exonerate_protein2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tcagcagtggcaggatgggaatggtgatttgccactctttccttactcagGTGGGCCACCACCTACTGAAAAGCTCATCTCTAGCTTGGAAGAAGAGACAGGGCTGgtgagtactgctacattgattggtggtccttgctttcctgaggtttaggt Alignment from Exonerate_coding2genome tcagcagtggcaggatgggaatggtgatttgccactctttccttactcaggtgggccaccacctactgaaaagctcatctctagcttggaagaagagacagggctggtgagtactgctacattgattggtggtccttgctttcctgaggtttaggt Alignment from GeneWise GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tcagcagtggcaggatgggaatggtgatttgccactctttccttactcagGTGGGCCACCACCTACTGAAAAGCTCATCTCTAGCTTGGAAGAAGAGACAGGGCTGgtgagtactgctacattgattggtggtccttgctttcctgaggtttaggt #### Ehbp1l1_ID1228_7 --> 2 - 1 Original Alignment atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAA-GATGAAGGCCACATACGGCCCCAGCAGGCAg agtccctttgtatgactttgttcctgaattttttttaattgcaaatttagatCTATCATGTGAGTTGAAGAGACTCTGTGAGGAGGAACGACG-AGGTCACATACGTCCCCAGCAGTCAggttagtctagtaatgggatgagatggcaatccaaacctctaaaagctact Alignment from CESAR atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg agtccctttgtatgactttgttcctgaattttttttaattgcaaatttagatCTATCATGTGAGTTGAAGAGACTCTGTGAGGAGGAACGACGAGGTCACATACGTCCCCAGCAGTCAggttagtctagtaatgggatgagatggcaatccaaacctctaaaagctagt Alignment from Spaln_aa2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG agtccctttgtatgactttgttcctgaattttttttaattgcaaatttagATCTATCATGTGAGTTGAAGAGACTCTGTGAGGAGGAACGACGAGGTCACATACGTCCCCAGCAGTCAGgttagtctagtaatgggatgagatggcaatccaaacctctaaaagctact Alignment from Spaln_nt2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG agtccctttgtatgactttgttcctgaattttttttaattgcaaatttagATCTATCATGTGAGTTGAAGAGACTCTGTGAGGAGGAACGACGAGGTCACATACGTCCCCAGCAGTCAGgttagtctagtaatgggatgagatggcaatccaaacctctaaaagctact Alignment from Pairagon ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG agtccctttgtatgactttgttcctgaattttttttaattgcaaatttagATCTATCATGTGAGTTGAAGAGACTCTGTGAGGAGGAACGACGAGGTCACATACGTCCCCAGCAGTCAGgttagtctagtaatgggatgagatggcaatccaaacctctaaaagctact Alignment from Exonerate_protein2genome agtccctttgtatgactttgttcctgaattttttttaattgcaaatttagatctatcatgtgagttgaagagactctgtgaggaggaacgacgaggtcacatacgtccccagcagtcaggttagtctagtaatgggatgagatggcaatccaaacctctaaaagctact Alignment from Exonerate_coding2genome agtccctttgtatgactttgttcctgaattttttttaattgcaaatttagatctatcatgtgagttgaagagactctgtgaggaggaacgacgaggtcacatacgtccccagcagtcaggttagtctagtaatgggatgagatggcaatccaaacctctaaaagctact Alignment from GeneWise ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG agtccctttgtatgactttgttcctgaattttttttaattgcaaatttagATCTATCATGTGAGTTGAAGAGACTCTGTGAGGAGGAACGACGAGGTCACATACGTCCCCAGCAGTCAGgttagtctagtaatgggatgagatggcaatccaaacctctaaaagctact #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAG-CCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTCATT------CATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCCAAGT-CATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCTGTC---CTTCTACAAGAAGGCCGTGCCatgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTC------ATTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCCAAGTCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCatgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTC------ATTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCCAAGTCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCATgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTCA------TTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCCAAGTCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCATgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTCA------TTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCCAAGTCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCATgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Exonerate_protein2genome tacaacagcccatcttcacatttctcccccctctctccgcccatcttcaggagtcaaaaggacagcggaaagttttagctgcagtgggtgtcattcatcatgcaggtcccctacctggccagatctcacttcaattgcggcagaagccccaagtcatcaaagttgtacacgctgagcttaccctcacactcgctgtccttctacaagaaggccgtgccatgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Exonerate_coding2genome tacaacagcccatcttcacatttctcccccctctctccgcccatcttcaggagtcaaaaggacagcggaaagttttagctgcagtgggtgtcattcatcatgcaggtcccctacctggccagatctcacttcaattgcggcagaagccccaagtcatcaaagttgtacacgctgagcttaccctcacactcgctgtccttctacaagaaggccgtgccatgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCC------AC tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTC------ATTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCCAAGTCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCATGCAAGCgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAG-GTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg acaatgcaaatacatcataatgagtgattgccatgctcttctgtggccagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGCGTGGAAACAG-TCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtatgatgtttttgctttctcaactaccaaacatgataccactctgtccc Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg acaatgcaaatacatcataatgagtgattgccatgctcttctgtggccagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGCGTGGAAACAGTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtatgatgtttttgctttctcaactaccaaacatgataccactctgtccc Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaatacatcataatgagtgattgccatgctcttctgtggccagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGCGTGGAAACAGTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtatgatgtttttgctttctcaactaccaaacatgataccactctgtccc Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaatacatcataatgagtgattgccatgctcttctgtggccagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGCGTGGAAACAGTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtatgatgtttttgctttctcaactaccaaacatgataccactctgtccc Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAG-GTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaatacatcataatgagtgattgccatgctcttctgtggccagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGCGTGGAAACAGT-CAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtatgatgtttttgctttctcaactaccaaacatgataccactctgtccc Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaatacatcataatgagtgattgccatgctcttctgtggccagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGCGTGGAAACAGTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtatgatgtttttgctttctcaactaccaaacatgataccactctgtccc Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaatacatcataatgagtgattgccatgctcttctgtggccagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGCGTGGAAACAGTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtatgatgtttttgctttctcaactaccaaacatgataccactctgtccc Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG acaatgcaaatacatcataatgagtgattgccatgctcttctgtggccagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGCGTGGAAACAGTCAGGGGCAACGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtatgatgtttttgctttctcaactaccaaacatgataccactctgtccc #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGC-TCTCTACAGAAGGAGGGTCACtg aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagggGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACCACCCTGC-AAAGGAGGGCCAAtggtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagggGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACCACCCTGCAAAGGAGGGCCAAtggtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACCACCCTGCAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCT-CTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACCACCCTGCA-AAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCC--------GCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACCACCCTGC--------AAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACCACCCTGCAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACCACCCTGCAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACCACCCTGCAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTG-AAGAATCAAGAAAAGAAG gcaagtccctaatgccatagaaatttacgacacatgtgcactcgctgcagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGTTGGAAAAGGAAAAGAAAGAACTTCAAGAACGCCTCCAAGA-ACAAGAAGAGAAGgtgagggtggatcactgataagttctataagtaaagtagatcaaaaggaa Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG gcaagtccctaatgccatagaaatttacgacacatgtgcactcgctgcagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGTTGGAAAAGGAAAAGAAAGAACTTCAAGAACGCCTCCAAGAACAAGAAGAGAAGgtgagggtggatcactgataagttctataagtaaagtagatcaaaaggaa Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG gcaagtccctaatgccatagaaatttacgacacatgtgcactcgctgcagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGTTGGAAAAGGAAAAGAAAGAACTTCAAGAACGCCTCCAAGAACAAGAAGAGAAGgtgagggtggatcactgataagttctataagtaaagtagatcaaaaggaa Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG gcaagtccctaatgccatagaaatttacgacacatgtgcactcgctgcagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGTTGGAAAAGGAAAAGAAAGAACTTCAAGAACGCCTCCAAGAACAAGAAGAGAAGgtgagggtggatcactgataagttctataagtaaagtagatcaaaaggaa Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG gcaagtccctaatgccatagaaatttacgacacatgtgcactcgctgcagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGTTGGAAAAGGAAAAGAAAGAACTTCAAGAACGCCTCCAAGAACAAGAAGAGAAGgtgagggtggatcactgataagttctataagtaaagtagatcaaaaggaa Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG gcaagtccctaatgccatagaaatttacgacacatgtgcactcgctgcagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGTTGGAAAAGGAAAAGAAAGAACTTCAAGAACGCCTCCAAGAACAAGAAGAGAAGgtgagggtggatcactgataagttctataagtaaagtagatcaaaaggaa Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG gcaagtccctaatgccatagaaatttacgacacatgtgcactcgctgcagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGTTGGAAAAGGAAAAGAAAGAACTTCAAGAACGCCTCCAAGAACAAGAAGAGAAGgtgagggtggatcactgataagttctataagtaaagtagatcaaaaggaa Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG gcaagtccctaatgccatagaaatttacgacacatgtgcactcgctgcagGACTTTGAAGAACTGGATCAGGATTTTATAATGGCCAAACAGGTAGAACAGTTGGAAAAGGAAAAGAAAGAACTTCAAGAACGCCTCCAAGAACAAGAAGAGAAGgtgagggtggatcactgataagttctataagtaaagtagatcaaaaggaa #### Eif3a_ID13320_10 --> 0 - 0 Original Alignment GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGAT-GCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccttgttgctattttgttttctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATCGCAG-CCGGCACTGTGACCTGCAGgtaagatttacagatatggtttgcattgtatgacctgtaaaattagttct Alignment from CESAR GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccttgttgctattttgttttctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATCGCAGCCGGCACTGTGACCTGCAGgtaagatttacagatatggtttgcattgtatgacctgtaaaattagttct Alignment from Spaln_aa2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccttgttgctattttgttttctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATCGCAGCCGGCACTGTGACCTGCAGgtaagatttacagatatggtttgcattgtatgacctgtaaaattagttct Alignment from Spaln_nt2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccttgttgctattttgttttctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATCGCAGCCGGCACTGTGACCTGCAGgtaagatttacagatatggtttgcattgtatgacctgtaaaattagttct Alignment from Pairagon GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGAT-GCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccttgttgctattttgttttctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATCGCAGCC-GGCACTGTGACCTGCAGgtaagatttacagatatggtttgcattgtatgacctgtaaaattagttct Alignment from Exonerate_protein2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccttgttgctattttgttttctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATCGCAGCCGGCACTGTGACCTGCAGgtaagatttacagatatggtttgcattgtatgacctgtaaaattagttct Alignment from Exonerate_coding2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccttgttgctattttgttttctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATCGCAGCCGGCACTGTGACCTGCAGgtaagatttacagatatggtttgcattgtatgacctgtaaaattagttct Alignment from GeneWise GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccttgttgctattttgttttctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATCGCAGCCGGCACTGTGACCTGCAGgtaagatttacagatatggtttgcattgtatgacctgtaaaattagttct #### Eml3_ID2504_4 --> 1 - 2 Original Alignment TGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCC-TCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGag TGCAGCCGCTTGAATGTTCAGATacgtttgtgtccttttcctttgtatagaCCCCGAAGAAATTCTTTGCTCCTCACCTT-CCCTTCCAAGCGTCCTAGACAAAAGCTCTCTAAGAAAGCACCTTCTTCCGCTAACTTATTGCTAAGGTCAGGGAGGACAGAAaggtaatccagcataggttgcccattcaggattaatataacttaacttcctc Alignment from CESAR TGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGag TGCAGCCGCTTGAATGTTCAGATacgtgaatgtccttttcctttgtatagaCCCCGAAGAAATTCTTTGCTCCTCACCTTCCCTTCCAAGCGTCCTAGACAAAAGCTCTCTAAGAAAGCACCTTCTTCCGCTAACTTATTGCTAAGGTCAGGGAGGACAGAAaggtaatccagcataggttgcccattcaggattaatataacttaacttcctc Alignment from Spaln_aa2Genome TGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG TGCAGCCGCTTGAATGTTCAGATACgtttgtgtccttttcctttgtatagaccccgaagA---------AATTCTTTGCTCCTCACCTTCCCTTCCAAGCGTCCTAGACAAAAGCTCTCTAAGAAAGCACCTTCTTCCGCTAACTTATTGCTAAGGTCAGGGAGGACAGAAAGgtaatccagcataggttgcccattcaggattaatataacttaacttcctc Alignment from Spaln_nt2Genome TGCAGCCTCTTCAGC GTTCTGACACGCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG TGCAGCCGCTTGAATgttcagatacgtttgtgtccttttcctttgtatag----------ACCCCGAAGAAATTCTTTGCTCCTCACCTTCCCTTCCAAGCGTCCTAGACAAAAGCTCTCTAAGAAAGCACCTTCTTCCGCTAACTTATTGCTAAGGTCAGGGAGGACAGAAAGgtaatccagcataggttgcccattcaggattaatataacttaacttcctc Alignment from Pairagon TGCAGCCTCTTCAGCGTTCTGACACG-------------------------CCCCGAAGAAATTCTTCCTCCTCCT--CCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGC---GGTCAGGGAGCACAGAGAG TGCAGCCGCTTGAATGTTCAGATACGTTTGTGTCCTTTTCCTTTGTATAGACCCCGAAGAAATTCTT--TGCTCCTCACCTTCCCTTCCAAGCGTCCTAGACAAAAGCTCTCTAAGAAAGCACCTTCTTCCGCTAAC---TTATTGCTAAGGTCAGGGAGGACAGAAAGgtaatccagcataggttgcccattcaggattaatataacttaacttcctc Alignment from Exonerate_protein2genome CCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG tgcagccgcttgaatgttcagatacgtttgtgtccttttcctttgtatagaCCCCGAAGAAATTCTTTGCTCCTCACCTTCCCTTCCAAGCGTCCTAGACAAAAGCTCTCTAAGAAAGCACCTTCTTCCGCTAACTTATTGCTAAGGTCAGGGAGGACAGAAAGgtaatccagcataggttgcccattcaggattaatataacttaacttcctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CAGCCTCTTCAGCGTTCTGACACG---------------------------CCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG CAGCCGCTTGAATGTTCAGATACGTTTGTGTCCTTTTCCTTTG--TATAGACCCCGAAGAAATTCTTTGCTCCTCACCTTCCCTTCCAAGCGTCCTAGACAAAAGCTCTCTAAGAAAGCACCTTCTTCCGCTAACTTATTGCTAAGGTCAGGGAGGACAGAAAGgtaatccagcataggttgcccattcaggattaatataacttaacttcctc #### Eml3_ID2506_5 --> 1 - 1 Original Alignment cCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGG-AGGAGCAATTATAACTTAg ccatcactagcgatggacacaggtttcaaaatattctccttttgtttaagtCGGGGGAATAAAGACCCCCTGTCCAGTCCTGGGGGTCCTGGCTCTCGGCAGGA-CAATTATAATTTAggtgggttaaggagggaacatggcattaacacagactagtaatggcattaa Alignment from CESAR cCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAg ccatcactagcgatggacacaggtttcaaaatattctccttttgtttaagtCGGGGGAATAAAGACCCCCTGTCCAGTCCTGGGGGTCCTGGCTCTCGGCAGGACAATTATAATTTAggtgggttaaggagggaacatggcattaacacagactagtaatggcattaa Alignment from Spaln_aa2Genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ccatcactagcgatggacacaggtttcaaaatattctccttttgtttaagTCGGGGGAATAAAGACCCCCTGTCCAGTCCTGGGGGTCCTGGCTCTCGGCAGGACAATTATAATTTAGgtgggttaaggagggaacatggcattaacacagactagtaatggcattaa Alignment from Spaln_nt2Genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ccatcactagcgatggacacaggtttcaaaatattctccttttgtttaagTCGGGGGAATAAAGACCCCCTGTCCAGTCCTGGGGGTCCTGGCTCTCGGCAGGACAATTATAATTTAGgtgggttaaggagggaacatggcattaacacagactagtaatggcattaa Alignment from Pairagon CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ccatcactagcgatggacacaggtttcaaaatattctccttttgtttaagTCGGGGGAATAAAGACCCCCTGTCCAGTCCTGGGGGTCCTGGCTCTCGGCAGGACAATTATAATTTAGgtgggttaaggagggaacatggcattaacacagactagtaatggcattaa Alignment from Exonerate_protein2genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ccatcactagcgatggacacaggtttcaaaatattctccttttgtttaagTCGGGGGAATAAAGACCCCCTGTCCAGTCCTGGGGGTCCTGGCTCTCGGCAGGACAATTATAATTTAGgtgggttaaggagggaacatggcattaacacagactagtaatggcattaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ccatcactagcgatggacacaggtttcaaaatattctccttttgtttaagTCGGGGGAATAAAGACCCCCTGTCCAGTCCTGGGGGTCCTGGCTCTCGGCAGGACAATTATAATTTAGgtgggttaaggagggaacatggcattaacacagactagtaatggcattaa #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAAT-CTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagtTATGGATATAGAGGTCAGGATTCTTGCTCAAATCTTATTTG-GCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGAtggtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagtTATGGATATAGAGGTCAGGATTCTTGCTCAAATCTTATTTGGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGAtggtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATCTTATTTGGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATCTTATTTGGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATCTTATTTGGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATCTTATTTGGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATCTTATTTGGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa #### Eml3_ID2512_11 --> 0 - 0 Original Alignment AGTACAAATGACTCAGTCCTC-GCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tggcttcagggctcaaacaggtgtaccaaagcgtggctttctctccccagAGTACAAATGACTCTGTACTCCGCTGTTGGCT-CAGCCCTCGTGACAGCAGTTGTATTGTTACTAGTGGAAAATCACATGTTCACTTTTGGAATTGGAGTGGTGGTACAGGGGCTCCTGGAAATGGAATCCTTGCACGGAAGCAGGATGTTCTTGGGgtgagacgggtaagatagacaaacgcatggtataatcacaacatactgcg Alignment from CESAR AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tggcttcagggctcaaacaggtgtaccaaagcgtggctttctctccccagAGTACAAATGACTCTGTACTCCGCTGTTGGCTCAGCCCTCGTGACAGCAGTTGTATTGTTACTAGTGGAAAATCACATGTTCACTTTTGGAATTGGAGTGGTGGTACAGGGGCTCCTGGAAATGGAATCCTTGCACGGAAGCAGGATGTTCTTGGGgtgagacgggtaagatagacaaacgcatggtataatcacaacatactgcg Alignment from Spaln_aa2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tggcttcagggctcaaacaggtgtaccaaagcgtggctttctctccccagAGTACAAATGACTCTGTACTCCGCTGTTGGCTCAGCCCTCGTGACAGCAGTTGTATTGTTACTAGTGGAAAATCACATGTTCACTTTTGGAATTGGAGTGGTGGTACAGGGGCTCCTGGAAATGGAATCCTTGCACGGAAGCAGGATGTTCTTGGGgtgagacgggtaagatagacaaacgcatggtataatcacaacatactgcg Alignment from Spaln_nt2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tggcttcagggctcaaacaggtgtaccaaagcgtggctttctctccccagAGTACAAATGACTCTGTACTCCGCTGTTGGCTCAGCCCTCGTGACAGCAGTTGTATTGTTACTAGTGGAAAATCACATGTTCACTTTTGGAATTGGAGTGGTGGTACAGGGGCTCCTGGAAATGGAATCCTTGCACGGAAGCAGGATGTTCTTGGGgtgagacgggtaagatagacaaacgcatggtataatcacaacatactgcg Alignment from Pairagon AGTACAAATGACTCAGTCCT-CGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tggcttcagggctcaaacaggtgtaccaaagcgtggctttctctccccagAGTACAAATGACTCTGTACTCCGCTGTTGGC-TCAGCCCTCGTGACAGCAGTTGTATTGTTACTAGTGGAAAATCACATGTTCACTTTTGGAATTGGAGTGGTGGTACAGGGGCTCCTGGAAATGGAATCCTTGCACGGAAGCAGGATGTTCTTGGGgtgagacgggtaagatagacaaacgcatggtataatcacaacatactgcg Alignment from Exonerate_protein2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tggcttcagggctcaaacaggtgtaccaaagcgtggctttctctccccagAGTACAAATGACTCTGTACTCCGCTGTTGGCTCAGCCCTCGTGACAGCAGTTGTATTGTTACTAGTGGAAAATCACATGTTCACTTTTGGAATTGGAGTGGTGGTACAGGGGCTCCTGGAAATGGAATCCTTGCACGGAAGCAGGATGTTCTTGGGgtgagacgggtaagatagacaaacgcatggtataatcacaacatactgcg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tggcttcagggctcaaacaggtgtaccaaagcgtggctttctctccccagAGTACAAATGACTCTGTACTCCGCTGTTGGCTCAGCCCTCGTGACAGCAGTTGTATTGTTACTAGTGGAAAATCACATGTTCACTTTTGGAATTGGAGTGGTGGTACAGGGGCTCCTGGAAATGGAATCCTTGCACGGAAGCAGGATGTTCTTGGGgtgagacgggtaagatagacaaacgcatggtataatcacaacatactgcg #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATC-TATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gattcagtttaataaagatatgatagcagtaacaggtcttctgtccctagatGGGTTATACCTCGCACTAGGTTCACATGATAATATGATTTATATACTACAGTA-TTCCAGTTGTGGTACCAAATCTACCCACTTTGGAAGGTGTATGgtaagacacgtgcggcctgaacatccacagaacttagaaacccactgtga Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gattcagtttaataaagatatgatagcagtaacaggtcttctgtccctagatGGGTTATACCTCGCACTAGGTTCACATGATAATATGATTTATATACTACAGTATTCCAGTTGTGGTACCAAATCTACCCACTTTGGAAGGTGTATGgtaagacacgtgcggcctgaacatccacagaacttagaaacccactgtga Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gattcagtttaataaagatatgatagcagtaacaggtcttctgtccctagATGGGTTATACCTCGCACTAGGTTCACATGATAATATGATTTATATACTACAGTATTCCAGTTGTGGTACCAAATCTACCCACTTTGGAAGGTGTATGgtaagacacgtgcggcctgaacatccacagaacttagaaacccactgtga Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gattcagtttaataaagatatgatagcagtaacaggtcttctgtccctagATGGGTTATACCTCGCACTAGGTTCACATGATAATATGATTTATATACTACAGTATTCCAGTTGTGGTACCAAATCTACCCACTTTGGAAGGTGTATGgtaagacacgtgcggcctgaacatccacagaacttagaaacccactgtga Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACAT-CTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gattcagtttaataaagatatgatagcagtaacaggtcttctgtccctagATGGGTTATACCTCGCACTAGGTTCACATGATAATATGATTTATATACTACAGTA-TTCCAGTTGTGGTACCAAATCTACCCACTTTGGAAGGTGTATGgtaagacacgtgcggcctgaacatccacagaacttagaaacccactgtga Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gattcagtttaataaagatatgatagcagtaacaggtcttctgtccctagATGGGTTATACCTCGCACTAGGTTCACATGATAATATGATTTATATACTACAGTATTCCAGTTGTGGTACCAAATCTACCCACTTTGGAAGGTGTATGgtaagacacgtgcggcctgaacatccacagaacttagaaacccactgtga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gattcagtttaataaagatatgatagcagtaacaggtcttctgtccctagATGGGTTATACCTCGCACTAGGTTCACATGATAATATGATTTATATACTACAGTATTCCAGTTGTGGTACCAAATCTACCCACTTTGGAAGGTGTATGgtaagacacgtgcggcctgaacatccacagaacttagaaacccactgtga #### Eno4_ID12834_6 --> 0 - 0 Original Alignment GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGG-AAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gcatatgtagagatagagctctcataaggccctctccactaatcctgtagGAGCAACCATCAGCGTACTCTATGCCATTGCTGATGGGATCTATACTTAGTTGTGGTCAAGTCTT-CCCTGGTCGGATACATTTGATGAGAGGGGTAATTTGCATTCCAAGTCCTGGATTGACAGCTAAACAAgtgaatgatataaaaaaccatggcttcaaacagatatacagtcacactgc Alignment from CESAR GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gcatatgtagagatagagctctcataaggccctctccactaatcctgtagGAGCAACCATCAGCGTACTCTATGCCATTGCTGATGGGATCTATACTTAGTTGTGGTCAAGTCTTCCCTGGTCGGATACATTTGATGAGAGGGGTAATTTGCATTCCAAGTCCTGGATTGACAGCTAAACAAgtgaatgatataaaaaaccatggcttcaaacagatatacagtcacactgc Alignment from Spaln_aa2Genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gcatatgtagagatagagctctcataaggccctctccactaatcctgtagGAGCAACCATCAGCGTACTCTATGCCATTGCTGATGGGATCTATACTTAGTTGTGGTCAAGTCTTCCCTGGTCGGATACATTTGATGAGAGGGGTAATTTGCATTCCAAGTCCTGGATTGACAGCTAAACAAgtgaatgatataaaaaaccatggcttcaaacagatatacagtcacactgc Alignment from Spaln_nt2Genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGG-AAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gcatatgtagagatagagctctcataaggccctctccactaatcctgtagGAGCAACCATCAGCGTACTCTATGCCATTGCTGATGGGATCTATACTTAGTTGTGGTCAAGTCTTC-CCTGGTCGGATACATTTGATGAGAGGGGTAATTTGCATTCCAAGTCCTGGATTGACAGCTAAACAAgtgaatgatataaaaaaccatggcttcaaacagatatacagtcacactgc Alignment from Pairagon GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGG-GAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gcatatgtagagatagagctctcataaggccctctccactaatcctgtagGAGCAACCATCAGCGTACTCTATGCCATTGCTGATGGGATCTATACTTAGTTGTGGTCAAGTCTTC-CCTGGTCGGATACATTTGATGAGAGGGGTAATTTGCATTCCAAGTCCTGGATTGACAGCTAAACAAgtgaatgatataaaaaaccatggcttcaaacagatatacagtcacactgc Alignment from Exonerate_protein2genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gcatatgtagagatagagctctcataaggccctctccactaatcctgtagGAGCAACCATCAGCGTACTCTATGCCATTGCTGATGGGATCTATACTTAGTTGTGGTCAAGTCTTCCCTGGTCGGATACATTTGATGAGAGGGGTAATTTGCATTCCAAGTCCTGGATTGACAGCTAAACAAgtgaatgatataaaaaaccatggcttcaaacagatatacagtcacactgc Alignment from Exonerate_coding2genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAAAGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACA gcatatgtagagatagagctctcataaggccctctccactaatcctgtagGAGCAACCATCAGCGTACTCTATGCCATTGCTGATGGGATCTATACTTAGTTGTGGTCAAGTCTTCCCTGGTCGGATACATTTGATGAGAGGGGTAATTTGCATTCCAAGTCCTGGATTGACAGCTAAACAAGTGAATGATATAAAAAACCATGGCTTCAAACAGATATACAgtcacactgc Alignment from GeneWise GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gcatatgtagagatagagctctcataaggccctctccactaatcctgtagGAGCAACCATCAGCGTACTCTATGCCATTGCTGATGGGATCTATACTTAGTTGTGGTCAAGTCTTCCCTGGTCGGATACATTTGATGAGAGGGGTAATTTGCATTCCAAGTCCTGGATTGACAGCTAAACAAgtgaatgatataaaaaaccatggcttcaaacagatatacagtcacactgc #### Exoc6_ID7364_3 --> 0 - 0 Original Alignment GTGCAGGTTACCGATACCAACCGAAGGTTT-CAAGATGCAGGAAAAGAG tgttacatcagagtgactccatgtgtatctgtgttgcttttatttttcagGTGAAATTTAATGATACCAAT---CGCTTCCCAAG-TGCTGGAAAAGAGgttagtccctcattcatactcatgtccaaatcaatccttctctcttccag Alignment from CESAR GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagtgactccatgtgtatctgtgttgcttttatttttcagGTGAAATTTAATGATACCAATCGC---TTCCCAAGTGCTGGAAAAGAGgttagtccctcattcatactcatgtccaggctgttttgtctgttttttag Alignment from Spaln_aa2Genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagtgactccatgtgtatctgtgttgcttttatttttcagGTGAAATTTAATGATACCAAT---CGCTTCCCAAGTGCTGGAAAAGAGgttagtccctcattcatactcatgtccaaatcaatccttctctcttccag Alignment from Spaln_nt2Genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagtgactccatgtgtatctgtgttgcttttatttttcagGTGAAATTTAATGATACCAATC---GCTTCCCAAGTGCTGGAAAAGAGgttagtccctcattcatactcatgtccaaatcaatccttctctcttccag Alignment from Pairagon GTGCAGGTTACCGATACCAACCG------AAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagtgactccatgtgtatctgtgttgcttttatttttcagGTGAAATTTAATGATACCAATCGCTTCCCAAG---------TGCTGGAAAAGAGgttagtccctcattcatactcatgtccaaatcaatccttctctcttccag Alignment from Exonerate_protein2genome tgttacatcagagtgactccatgtgtatctgtgttgcttttatttttcaggtgaaatttaatgataccaatcgcttcccaagtgctggaaaagaggttagtccctcattcatactcatgtccaaatcaatccttctctcttccag Alignment from Exonerate_coding2genome tgttacatcagagtgactccatgtgtatctgtgttgcttttatttttcaggtgaaatttaatgataccaatcgcttcccaagtgctggaaaagaggttagtccctcattcatactcatgtccaaatcaatccttctctcttccag Alignment from GeneWise GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAA tgttacatcagagtgactccatgtgtatctgtgttgcttttatttttcaggtgaaatttaatgataccaatcgcttcccaagtgctggaaaagaggttagTCCCTCATT---CATACTCATGTCCAAATCAATCCTTCTCTCTTC #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGG-CATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG catttttgcatattatgttgcaggcacctagagcgttttatttcttccaggtGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCCATGGCT-CATATCCTCATCATTGGCTGGCTGTCCAGCGAAGACCAGCAAGAATGGTGCAgtaaatactcaaggaggctccctatccagggttcactctgccctccccat Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG catttttgcatattatgttgcaggcacctagagcgttttatttcttccaggtGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCCATGGCTCATATCCTCATCATTGGCTGGCTGTCCAGCGAAGACCAGCAAGAATGGTGCAgtaaatactcaaggaggctccctatccagggttcactctgccctccccat Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG catttttgcatattatgttgcaggcacctagagcgttttatttcttccagGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCCATGGCTCATATCCTCATCATTGGCTGGCTGTCCAGCGAAGACCAGCAAGAATGGTGCAgtaaatactcaaggaggctccctatccagggttcactctgccctccccat Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG catttttgcatattatgttgcaggcacctagagcgttttatttcttccagGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCCATGGCTCATATCCTCATCATTGGCTGGCTGTCCAGCGAAGACCAGCAAGAATGGTGCAgtaaatactcaaggaggctccctatccagggttcactctgccctccccat Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGG-CATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG catttttgcatattatgttgcaggcacctagagcgttttatttcttccagGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCCATGGCT-CATATCCTCATCATTGGCTGGCTGTCCAGCGAAGACCAGCAAGAATGGTGCAgtaaatactcaaggaggctccctatccagggttcactctgccctccccat Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG catttttgcatattatgttgcaggcacctagagcgttttatttcttccagGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCCATGGCTCATATCCTCATCATTGGCTGGCTGTCCAGCGAAGACCAGCAAGAATGGTGCAgtaaatactcaaggaggctccctatccagggttcactctgccctccccat Alignment from Exonerate_coding2genome ATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG catttttgcatattatgttgcaggcacctagagcgttttatttCTTCCAGGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCCATGGCTCATATCCTCATCATTGGCTGGCTGTCCAGCGAAGACCAGCAAGAATGGTGCAgtaaatactcaaggaggctccctatccagggttcactctgccctccccat Alignment from GeneWise GCACCACCGGTGAGGTACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG atattatgttgcaggcacctag------AGCGTTTTATTT---CTTCCAGGTGAACATCTGTGCAACTTAGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCCATGGCTCATATCCTCATCATTGGCTGGCTGTCCAGCGAAGACCAGCAAGAATGGTGCAgtaaatactcaaggaggctccctatccagggttcactctgccctccccat #### Fads1_ID2688_2 --> 0 - 0 Original Alignment GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATT-GGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ttcattctcatttccatcagttttcattatcctgtttttcttcttttcagGATCCTTTTGTGGCATTCCACTTCAACAAGGGTCTTGTGAGAAAATATATGAACTATCTT---CTTCGGGGAGCTAG-TCCCGAGCAACCCAGCTTTGAACCCACCAAGAATgtgagtcaatagaccctgaaaattagggatgctgtcgttgcactagtagt Alignment from CESAR GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ttcattctcatttccatcagttttcattatcctgtttttcttcttttcagGATCCTTTTGTGGCATTCCACTTCAACAAGGGTCTTGTGAGAAAATATATGAACTATCTTCTTCGGGGAGCT---AGTCCCGAGCAACCCAGCTTTGAACCCACCAAGAATgtgagtcaatagaccctgaaaattagggatgctgtcgttgcactagtagt Alignment from Spaln_aa2Genome GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ttcattctcatttccatcagttttcattatcctgtttttcttcttttcagGATCCTTTTGTGGCATTCCACTTCAACAAGGGTCTTGTGAGAAAATATATGAACTATCTTCTTCGGGGAGCT---AGTCCCGAGCAACCCAGCTTTGAACCCACCAAGAATgtgagtcaatagaccctgaaaattagggatgctgtcgttgcactagtagt Alignment from Spaln_nt2Genome GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ttcattctcatttccatcagttttcattatcctgtttttcttcttttcagGATCCTTTTGTGGCATTCCACTTCAACAAGGGTCTTGTGAGAAAATATATGAACTATCTTCT--TCGGGGAGCTAG-TCCCGAGCAACCCAGCTTTGAACCCACCAAGAATgtgagtcaatagaccctgaaaattagggatgctgtcgttgcactagtagt Alignment from Pairagon GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ttcattctcatttccatcagttttcattatcctgtttttcttcttttcagGATCCTTTTGTGGCATTCCACTTCAACAAGGGTCTTGTGAGAAAATATATGAACTATCTTCT--TCGGGGAGCTAG-TCCCGAGCAACCCAGCTTTGAACCCACCAAGAATgtgagtcaatagaccctgaaaattagggatgctgtcgttgcactagtagt Alignment from Exonerate_protein2genome GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ttcattctcatttccatcagttttcattatcctgtttttcttcttttcagGATCCTTTTGTGGCATTCCACTTCAACAAGGGTCTTGTGAGAAAATATATGAACTATCTTCTTCGGGGA---GCTAGTCCCGAGCAACCCAGCTTTGAACCCACCAAGAATgtgagtcaatagaccctgaaaattagggatgctgtcgttgcactagtagt Alignment from Exonerate_coding2genome GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ttcattctcatttccatcagttttcattatcctgtttttcttcttttcagGATCCTTTTGTGGCATTCCACTTCAACAAGGGTCTTGTGAGAAAATATATGAACTATCTTCTTCGGGGA---GCTAGTCCCGAGCAACCCAGCTTTGAACCCACCAAGAATgtgagtcaatagaccctgaaaattagggatgctgtcgttgcactagtagt Alignment from GeneWise GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ttcattctcatttccatcagttttcattatcctgtttttcttcttttcagGATCCTTTTGTGGCATTCCACTTCAACAAGGGTCTTGTGAGAAAATATATGAACTATCTTCTTCGGGGA---GCTAGTCCCGAGCAACCCAGCTTTGAACCCACCAAGAATgtgagtcaatagaccctgaaaattagggatgctgtcgttgcactagtagt #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCAC-ATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gcttagttaggctgaagttcacaaatttcacgaccctttctcttctttagAAAGTAATATCTGATGAGTTTCGAGAACTGCGGGCCACTGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTTTTGGTATACCTGCTTCGCCATTCCTCTGC-TGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGCTCCGTTCAGgtgagtcccacctctcagcctaaaccacaaatattgaagagtgtttgtac Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gcttagttaggctgaagttcacaaatttcacgaccctttctcttctttagAAAGTAATATCTGATGAGTTTCGAGAACTGCGGGCCACTGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTTTTGGTATACCTGCTTCGCCATTCCTCTGCTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGCTCCGTTCAGgtgagtcccacctctcagcctaaaccacaaatattgaagagtgtttgtac Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gcttagttaggctgaagttcacaaatttcacgaccctttctcttctttagAAAGTAATATCTGATGAGTTTCGAGAACTGCGGGCCACTGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTTTTGGTATACCTGCTTCGCCATTCCTCTGCTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGCTCCGTTCAGgtgagtcccacctctcagcctaaaccacaaatattgaagagtgtttgtac Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gcttagttaggctgaagttcacaaatttcacgaccctttctcttctttagAAAGTAATATCTGATGAGTTTCGAGAACTGCGGGCCACTGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTTTTGGTATACCTGCTTCGCCATTCCTCTGCTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGCTCCGTTCAGgtgagtcccacctctcagcctaaaccacaaatattgaagagtgtttgtac Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCA-CATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gcttagttaggctgaagttcacaaatttcacgaccctttctcttctttagAAAGTAATATCTGATGAGTTTCGAGAACTGCGGGCCACTGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTTTTGGTATACCTGCTTCGCCATTCCTCTGCT-GATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGCTCCGTTCAGgtgagtcccacctctcagcctaaaccacaaatattgaagagtgtttgtac Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gcttagttaggctgaagttcacaaatttcacgaccctttctcttctttagAAAGTAATATCTGATGAGTTTCGAGAACTGCGGGCCACTGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTTTTGGTATACCTGCTTCGCCATTCCTCTGCTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGCTCCGTTCAGgtgagtcccacctctcagcctaaaccacaaatattgaagagtgtttgtac Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gcttagttaggctgaagttcacaaatttcacgaccctttctcttctttagAAAGTAATATCTGATGAGTTTCGAGAACTGCGGGCCACTGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTTTTGGTATACCTGCTTCGCCATTCCTCTGCTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGCTCCGTTCAGgtgagtcccacctctcagcctaaaccacaaatattgaagagtgtttgtac Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gcttagttaggctgaagttcacaaatttcacgaccctttctcttctttagAAAGTAATATCTGATGAGTTTCGAGAACTGCGGGCCACTGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTTTTGGTATACCTGCTTCGCCATTCCTCTGCTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACATCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGCTCCGTTCAGgtgagtcccacctctcagcctaaaccacaaatattgaagagtgtttgtac #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACC---TCG-ACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtgtctaggggccgtgttcatgcctgcctgcagGGTCAGGCAGGTTGGCTACAGCATGAGTTTGGGCGTTTGTCACTTTTTGGCACCTCATCACATGTGGA-TTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtgaggactgaagttatgtcaggatatcattaagtctttgctcatctgac Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGG---AATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtgtctaggggccgtgttcatgcctgcctgcagGGTCAGGCAGGTTGGCTACAGCATGAGTTTGGGCGTTTGTCACTTTTTGGCACCTCATCACATGTGGATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtgaggactgaagttatgtcaggatatcattaagtctttgctcatctgac Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGG---AATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtgtctaggggccgtgttcatgcctgcctgcagGGTCAGGCAGGTTGGCTACAGCATGAGTTTGGGCGTTTGTCACTTTTTGGCACCTCATCACATGTGGATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtgaggactgaagttatgtcaggatatcattaagtctttgctcatctgac Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCG--ACATG-GAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtgtctaggggccgtgttcatgcctgcctgcagGGTCAGGCAGGTTGGCTACAGCATGAGTTTGGGCGTTTGTCACTTTTTGGCACCTCATCACATGTGGATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtgaggactgaagttatgtcaggatatcattaagtctttgctcatctgac Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCG--ACATG-GAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtgtctaggggccgtgttcatgcctgcctgcagGGTCAGGCAGGTTGGCTACAGCATGAGTTTGGGCGTTTGTCACTTTTTGGCACCTCATCACATGTGGATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtgaggactgaagttatgtcaggatatcattaagtctttgctcatctgac Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGG---AATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtgtctaggggccgtgttcatgcctgcctgcagGGTCAGGCAGGTTGGCTACAGCATGAGTTTGGGCGTTTGTCACTTTTTGGCACCTCATCACATGTGGATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtgaggactgaagttatgtcaggatatcattaagtctttgctcatctgac Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGG---AATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtgtctaggggccgtgttcatgcctgcctgcagGGTCAGGCAGGTTGGCTACAGCATGAGTTTGGGCGTTTGTCACTTTTTGGCACCTCATCACATGTGGATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtgaggactgaagttatgtcaggatatcattaagtctttgctcatctgac Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGG---AATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttttgactccagcattggtgtctaggggccgtgttcatgcctgcctgcagGGTCAGGCAGGTTGGCTACAGCATGAGTTTGGGCGTTTGTCACTTTTTGGCACCTCATCACATGTGGATTACCTGCTCCACCATTTTGTGATTGGACACCTAAAGgtgaggactgaagttatgtcaggatatcattaagtctttgctcatctgac #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGT-GGCCACCTAAATTTCCAGATTGAACACca tagttcatacacagatacatggaaatttgcctttctccctttcttctaagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACATC-GAATTTCCAGATTGAACACcagtactctgatactgcaaggatacatgggatggcacagggtccgggcaggg Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tagttcatacacagatacatggaaatttgcctttctccctttcttctaagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACATCGAATTTCCAGATTGAACACcagtactctgatactgcaaggatacatgggatggcacagggtccgggcaggg Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tagttcatacacagatacatggaaatttgcctttctccctttcttctaagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACATCGAATTTCCAGATTGAACACCAgtactctgatactgcaaggatacatgggatggcacagggtccgggcaggg Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tagttcatacacagatacatggaaatttgcctttctccctttcttctaagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACATCGAATTTCCAGATTGAACACCAgtactctgatactgcaaggatacatgggatggcacagggtccgggcaggg Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGT--------GGCCACCTAAATTTCCAGATTGAACACCA tagttcatacacagatacatggaaatttgcctttctccctttcttctaagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACATCG--------AATTTCCAGATTGAACACCAgtactctgatactgcaaggatacatgggatggcacagggtccgggcaggg Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tagttcatacacagatacatggaaatttgcctttctccctttcttctaagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACATCGAATTTCCAGATTGAACACCAgtactctgatactgcaaggatacatgggatggcacagggtccgggcaggg Alignment from Exonerate_coding2genome tagttcatacacagatacatggaaatttgcctttctccctttcttctaagctgcaggcaacatgcaatgtccaccaatctgccttcaacaactggttcagtcggacatcgaatttccagattgaacaccagtactctgatactgcaaggatacatgggatggcacagggtccgggcaggg Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tagttcatacacagatacatggaaatttgcctttctccctttcttctaagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACATCGAATTTCCAGATTGAACACCAgtactctgatactgcaaggatacatgggatggcacagggtccgggcaggg #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCCACTTGA-GCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggtaacatc Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCCACTTGAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggatttcgt Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCCACTTGAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggtaacatc Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCCACTTGAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggtaacatc Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCC-GCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCCACTT-GAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggtaacatc Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatCAGGACTCTGCCCACTGGTGGAATTTCCAGCCACTTGAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggtaacatc Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatCAGGACTCTGCCCACTGGTGGAATTTCCAGCCACTTGAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggtaacatc Alignment from GeneWise ---TCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGACTCTGCCCACTGGTGGAATTTCCAGCCACTTGAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggtaacatc #### Fads3_ID2663_6 --> 0 - 1 Original Alignment TATGGCAAGAAGAAACGCAGATACCTGCCCTAC-AACCACCAGCATCTATACTTCTTCCTGa caatctacaggatgtttctttcccctggatttcgtaacttcatcttttagTATGGCAAGAAGAAACAACGATACCTGCCATACCAATCATCAAC-TCTATACTTTTTCCTTggtagggggtgccagcacgatttattggtggcagttggcagccctaacaga Alignment from CESAR TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGa caatctacaggatgtttctttcccctggatttcgtaacttcatcttttagTATGGCAAGAAGAAACAACGATACCTGCCATACCAATCATCAACTCTATACTTTTTCCTTggtagggggtgccagcacgatttattggtggcagttggcagccctaacaga Alignment from Spaln_aa2Genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA caatctacaggatgtttctttcccctggatttcgtaacttcatcttttagTATGGCAAGAAGAAACAACGATACCTGCCATACCAATCATCAACTCTATACTTTTTCCTTGgtagggggtgccagcacgatttattggtggcagttggcagccctaacaga Alignment from Spaln_nt2Genome TATGGCAAGAAGAAACGCAGATACCTGCCCTAC-AACCACCAGCATCTATACTTCTTCCTGA caatctacaggatgtttctttcccctggatttcgtaacttcatcttttagTATGGCAAGAAGAAACAACGATACCTGCCATACCAATCATCAAC-TCTATACTTTTTCCTTGgtagggggtgccagcacgatttattggtggcagttggcagccctaacaga Alignment from Pairagon TATGGCAAGAAGAAACGCAGATACCTGCCCTA--------CAACCACCAGCATCTATACTTCTTCCTGA caatctacaggatgtttctttcccctggatttcgtaacttcatcttttagTATGGCAAGAAGAAACAACGATACCTGCCATACCAATCATCAAC--------TCTATACTTTTTCCTTGgtagggggtgccagcacgatttattggtggcagttggcagccctaacaga Alignment from Exonerate_protein2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA caatctacaggatgtttctttcccctggatttcgtaacttcatcttttagTATGGCAAGAAGAAACAACGATACCTGCCATACCAATCATCAACTCTATACTTTTTCCTTGgtagggggtgccagcacgatttattggtggcagttggcagccctaacaga Alignment from Exonerate_coding2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA caatctacaggatgtttctttcccctggatttcgtaacttcatcttttagTATGGCAAGAAGAAACAACGATACCTGCCATACCAATCATCAACTCTATACTTTTTCCTTGgtagggggtgccagcacgatttattggtggcagttggcagccctaacaga Alignment from GeneWise TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA caatctacaggatgtttctttcccctggatttcgtaacttcatcttttagTATGGCAAGAAGAAACAACGATACCTGCCATACCAATCATCAACTCTATACTTTTTCCTTGgtagggggtgccagcacgatttattggtggcagttggcagccctaacaga #### Fads3_ID2664_7 --> 2 - 0 Original Alignment ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATG-CTGGTGTGCATGCAGTGGACG ccccctggctgagggcttggctaagggccattgtttttttcttgcaatagttGGCCCACCACTCTTCACTTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGCTTGGTAT-CATGCAGTGGACTgtcggggactcaacttcaaaagctaaggaatgaaagctttcaacactatc Alignment from CESAR ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG ccccctggctgagggcttggctaagggccattgtttttttcttgcaatagttGGCCCACCACTCTTCACTTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGCTTGGTATCATGCAGTGGACTgtcggggactcaacttcaaaagctaaggaatgaaagctttcaacactatc Alignment from Spaln_aa2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG ccccctggctgagggcttggctaagggccattgtttttttcttgcaatagTTGGCCCACCACTCTTCACTTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGCTTGGTATCATGCAGTGGACTgtcggggactcaacttcaaaagctaaggaatgaaagctttcaacactatc Alignment from Spaln_nt2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG ccccctggctgagggcttggctaagggccattgtttttttcttgcaatagTTGGCCCACCACTCTTCACTTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGCTTGGTATCATGCAGTGGACTgtcggggactcaacttcaaaagctaaggaatgaaagctttcaacactatc Alignment from Pairagon TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG ccccctggctgagggcttggctaagggccattgtttttttcttgcaatagTTGGCCCACCACTCTTCACTTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGCTTGGTATCATGCAGTGGACTgtcggggactcaacttcaaaagctaaggaatgaaagctttcaacactatc Alignment from Exonerate_protein2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG ccccctggctgagggcttggctaagggccattgtttttttcttgcaatagTTGGCCCACCACTCTTCACTTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGCTTGGTATCATGCAGTGGACTgtcggggactcaacttcaaaagctaaggaatgaaagctttcaacactatc Alignment from Exonerate_coding2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG ccccctggctgagggcttggctaagggccattgtttttttcttgcaatagTTGGCCCACCACTCTTCACTTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGCTTGGTATCATGCAGTGGACTgtcggggactcaacttcaaaagctaaggaatgaaagctttcaacactatc Alignment from GeneWise TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG ccccctggctgagggcttggctaagggccattgtttttttcttgcaatagTTGGCCCACCACTCTTCACTTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGCTTGGTATCATGCAGTGGACTgtcggggactcaacttcaaaagctaaggaatgaaagctttcaacactatc #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCC-AAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG tgagtcatcttgatcgaatgattcaatatgcttttgtctccctcctgcaggGTCTTGGAGAGCCAGTGGTTTGTGTGGATCACACAGATGAACCATATCCCCCAAGAAGA-AGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaaccttcttgtgtgctgaagtgcatactagtggcaaaggtgtctgtgc Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG tgagtcatcttgatcgaatgattcaatatgcttttgtctccctcctgcaggGTCTTGGAGAGCCAGTGGTTTGTGTGGATCACACAGATGAACCATATCCCCCAAGAAGAAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaaccttcttgtgtgctgaagtgcatactagtggcaaaggtgtctgtgc Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG tgagtcatcttgatcgaatgattcaatatgcttttgtctccctcctgcagGGTCTTGGAGAGCCAGTGGTTTGTGTGGATCACACAGATGAACCATATCCCCCAAGAAGAAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaaccttcttgtgtgctgaagtgcatactagtggcaaaggtgtctgtgc Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG tgagtcatcttgatcgaatgattcaatatgcttttgtctccctcctgcagGGTCTTGGAGAGCCAGTGGTTTGTGTGGATCACACAGATGAACCATATCCCCCAAGAAGAAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaaccttcttgtgtgctgaagtgcatactagtggcaaaggtgtctgtgc Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG tgagtcatcttgatcgaatgattcaatatgcttttgtctccctcctgcagGGTCTTGGAGAGCCAGTGGTTTGTGTGGATCACACAGATGAACCATATCCCCCAAGAAGAAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaaccttcttgtgtgctgaagtgcatactagtggcaaaggtgtctgtgc Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG tgagtcatcttgatcgaatgattcaatatgcttttgtctccctcctgcagGGTCTTGGAGAGCCAGTGGTTTGTGTGGATCACACAGATGAACCATATCCCCCAAGAAGAAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaaccttcttgtgtgctgaagtgcatactagtggcaaaggtgtctgtgc Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG tgagtcatcttgatcgaatgattcaatatgcttttgtctccctcctgcagGGTCTTGGAGAGCCAGTGGTTTGTGTGGATCACACAGATGAACCATATCCCCCAAGAAGAAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaaccttcttgtgtgctgaagtgcatactagtggcaaaggtgtctgtgc Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG tgagtcatcttgatcgaatgattcaatatgcttttgtctccctcctgcagGGTCTTGGAGAGCCAGTGGTTTGTGTGGATCACACAGATGAACCATATCCCCCAAGAAGAAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgtaaccttcttgtgtgctgaagtgcatactagtggcaaaggtgtctgtgc #### Fads3_ID2668_11 --> 1 - 2 Original Alignment cCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTG-AAGCCTTTCCTCACCGCTCTGGTGGATATCATCgg taagataacatgattatgggggtatcacttgttttacttttacttgatagcCTTGTTCCTACTATGTCCAGGCATAACTACCGGAGGGTGGCACCACTTGTTGAGGCATTCTGTGCTACACATGGACTCCACCGTAAGGTACAAGCCATTTC-TATGGCATTGGTGGAAATCATTgggtaaatgtttggagccaagcaacctgggtctcataagtattactaaagca Alignment from CESAR cCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCgg taagataacatgattatgggggtatcacttgttttacttttacttgatagcCTTGTTCCTACTATGTCCAGGCATAACTACCGGAGGGTGGCACCACTTGTTGAGGCATTCTGTGCTACACATGGACTCCACCGTAAGGTACAAGCCATTTCTATGGCATTGGTGGAAATCATTgggtaaatgtttggagccaagcaacctgggtctcataagtattactaaagca Alignment from Spaln_aa2Genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG taagataacatgattatgggggtatcacttgttttacttttacttgatagCCTTGTTCCTACTATGTCCAGGCATAACTACCGGAGGGTGGCACCACTTGTTGAGGCATTCTGTGCTACACATGGACTCCACCGTAAGGTACAAGCCATTTCTATGGCATTGGTGGAAATCATTGGgtaaatgtttggagccaagcaacctgggtctcataagtattactaaagca Alignment from Spaln_nt2Genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTG-AAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG taagataacatgattatgggggtatcacttgttttacttttacttgatagCCTTGTTCCTACTATGTCCAGGCATAACTACCGGAGGGTGGCACCACTTGTTGAGGCATTCTGTGCTACACATGGACTCCACCGTAAGGTACAAGCCATTTCT-ATGGCATTGGTGGAAATCATTGGgtaaatgtttggagccaagcaacctgggtctcataagtattactaaagca Alignment from Pairagon CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTC---------------------------TGGTGGATATCATCGG taagataacatgattatgggggtatcacttgttttacttttacttgatagCCTTGTTCCTACTATGTCCAGGCATAACTACCGGAGGGTGGCACCACTTGTTGAGGCATTCTGTGCTACACATGGACTCCAC---------------------------CGTAAGGTACAAGCCATTTCTATGGCATTGGTGGAAATCATTGGgtaaatgtttggagccaagcaacctgggtctcataagtattactaaagca Alignment from Exonerate_protein2genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG taagataacatgattatgggggtatcacttgttttacttttacttgatagCCTTGTTCCTACTATGTCCAGGCATAACTACCGGAGGGTGGCACCACTTGTTGAGGCATTCTGTGCTACACATGGACTCCACCGTAAGGTACAAGCCATTTCTATGGCATTGGTGGAAATCATTGGgtaaatgtttggagccaagcaacctgggtctcataagtattactaaagca Alignment from Exonerate_coding2genome CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGGG taagataacatgattatgggggtatcacttgttttacttttacttgatagCCTTGTTCCTACTATGTCCAGGCATAACTACCGGAGGGTGGCACCACTTGTTGAGGCATTCTGTGCTACACATGGACTCCACCGTAAGGTACAAGCCATTTCTATGGCATTGGTGGAAATCATTGGGtaaatgtttggagccaagcaacctgggtctcataagtattactaaagca Alignment from GeneWise CCTCTTCCCCACGATGCCAAGGCACAACTACCGGAGGGTGGCCCCCCTGGTCAAGGCGTTCTGCGCCAAGCACGGCCTACACTACGAGGTGAAGCCTTTCCTCACCGCTCTGGTGGATATCATCGG taagataacatgattatgggggtatcacttgttttacttttacttgatagCCTTGTTCCTACTATGTCCAGGCATAACTACCGGAGGGTGGCACCACTTGTTGAGGCATTCTGTGCTACACATGGACTCCACCGTAAGGTACAAGCCATTTCTATGGCATTGGTGGAAATCATTGGgtaaatgtttggagccaagcaacctgggtctcataagtattactaaagca #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTC-TATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTCTACACCAAAC-CCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagataggttatctctccaacccacagCAGTTG Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTG-TTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTCTACACCAAA-CCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagatcctcccatcctgtgcttcacagCAGTTG Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTCTACACCAAACCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagataggttatctctccaacccacagCAGTTG Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTG-TTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCC------TGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTCTACACCAAAC-CCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagataggttatctctccaacccacagCAGTTG Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTG-TTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTCTACACCAAAC-CCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagataggttatctctccaacccacagCAGTTG Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTCTACACCAAACCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagataggttatctctccaacccacagCAGTTG Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTCTACACCAAACCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagataggttatctctccaacccacagCAGTTG Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTCTACACCAAACCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagataggttatctctccaacccacagCAGTTG #### Fas_ID6926_7 --> 2 - 0 Original Alignment taTTTATATATCGAAAGTACCGGAAAAGAAAGTGCTGGAAAAGGAGA-CAGGATGACCCTGAATCTAGAACCTCCAGTCGT atcgtcaactattcacagcaatatgacatcggctgagtttgcacccttagtaTTTATATATAGAAAGTACCGAAAAAGAAAGTGCTGGAAAAGGAGACCAAGATG-CCCCGAATCCAGAACCTCAAGTCGTgtgagcatctagtgcaatacagtgattctctttccaatactcccaatcaa Alignment from CESAR taTTTATATATCGAAAGTACCGGAAAAGAAAGTGCTGGAAAAGGAGACAGGATGACCCTGAATCTAGAACCTCCAGTCGT atcgtcaactattcacagcaatatgacatcggctgagtttgcacccttagtaTTTATATATAGAAAGTACCGAAAAAGAAAGTGCTGGAAAAGGAGACCAAGATGCCCCGAATCCAGAACCTCAAGTCGTgtgagcatctagtgcaatacagtgattctctttccaatactcccaatcaa Alignment from Spaln_aa2Genome TATTTATATATCGAAAGTACCGGAAAAGAAAGTGCTGGAAAAGGAGACAGGATGACCCTGAATCTAGAACCTCCAGTCGT atcgtcaactattcacagcaatatgacatcggctgagtttgcacccttagTATTTATATATAGAAAGTACCGAAAAAGAAAGTGCTGGAAAAGGAGACCAAGATGCCCCGAATCCAGAACCTCAAGTCGTgtgagcatctagtgcaatacagtgattctctttccaatactcccaatcaa Alignment from Spaln_nt2Genome TATTTATATATCGAAAGTACCGGAAAAGAAAGTGCTGGAAAAGGAGACAGGATGACCCTGAATCTAGAACCTCCAGTCGT atcgtcaactattcacagcaatatgacatcggctgagtttgcacccttagTATTTATATATAGAAAGTACCGAAAAAGAAAGTGCTGGAAAAGGAGACCAAGATGCCCCGAATCCAGAACCTCAAGTCGTgtgagcatctagtgcaatacagtgattctctttccaatactcccaatcaa Alignment from Pairagon TATTTATATATCGAAAGTACCGGAAAAGAAAGTGCTGGAAAAGGAGA-CAGGATGACCCTGAATCTAGAACCTCCAGTCGT atcgtcaactattcacagcaatatgacatcggctgagtttgcacccttagTATTTATATATAGAAAGTACCGAAAAAGAAAGTGCTGGAAAAGGAGACCAAGATG-CCCCGAATCCAGAACCTCAAGTCGTgtgagcatctagtgcaatacagtgattctctttccaatactcccaatcaa Alignment from Exonerate_protein2genome TATTTATATATCGAAAGTACCGGAAAAGAAAGTGCTGGAAAAGGAGACAGGATGACCCTGAATCTAGAACCTCCAGTCGTGAAACCATACCAATGAATGCC atcgtcaactattcacagcaatatgacatcggctgagtttgcacccttagTATTTATATATAGAAAGTACCGAAAAAGAAAGTGCTGGAAAAGGAGACCAAGATGCCCCGAATCCAGAACCTCAAGTCGTGTGAGCATCTAGTGCAATACAgtgattctctttccaatactcccaatcaa Alignment from Exonerate_coding2genome TATTTATATATCGAAAGTACCGGAAAAGAAAGTGCTGGAAAAGGAGACAGGATGACCCTGAATCTAGAACCTCCAGTCGTGAAACCATACCAATGAATGCC atcgtcaactattcacagcaatatgacatcggctgagtttgcacccttagTATTTATATATAGAAAGTACCGAAAAAGAAAGTGCTGGAAAAGGAGACCAAGATGCCCCGAATCCAGAACCTCAAGTCGTGTGAGCATCTAGTGCAATACAgtgattctctttccaatactcccaatcaa Alignment from GeneWise TATTTATATATCGAAAGTACCGGAAAAGAAAGTGCTGGAAAAGGAGACAGGATGACCCTGAATCTAGAACCTCCAGTCGTGAAACCATA-- atcgtcaactattcacagcaatatgacatcggctgagtttgcacccttagTATTTATATATAGAAAGTACCGAAAAAGAAAGTGCTGGAAAAGGAGACCAAGATGCCCCGAATCCAGAACCTCAAGTCGTGTGAGCATCTAgtgcaatacagtgattctctttccaatactcccaatcaa #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTG-CAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tattttgttggtacttgttcccttactgtgtctggtctctgtcttcccagaTTCCTGGACCTGCCTTGGGAAGAATTGCTGCTCGTTCATGTTGTAAACTGGGTCCCACTTCACCAG---CTTCGACTGCCAGC-GGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCATTTGGCCAGATTACGCCGCTTTGATGCTGCTCAAgtgagtatagcatcaaacagggaccataattatgaggtggtaagcagggg Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tattttgttggtacttgttcccttactgtgtctggtctctgtcttcccagaTTCCTGGACCTGCCTTGGGAAGAATTGCTGCTCGTTCATGTTGTAAACTGGGTCCCACTTCACCAG---CTTCGACTGCCAGCGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCATTTGGCCAGATTACGCCGCTTTGATGCTGCTCAAgtgagtatagcatcaaacagggaccataattatgaggtggtaagcagggg Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tattttgttggtacttgttcccttactgtgtctggtctctgtcttcccagATTCCTGGACCTGCCTTGGGAAGAATTGCTGCTCGTTCATGTTGTAAACTGGGTCCCACTTCACCAG---CTTCGACTGCCAGCGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCATTTGGCCAGATTACGCCGCTTTGATGCTGCTCAAgtgagtatagcatcaaacagggaccataattatgaggtggtaagcagggg Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tattttgttggtacttgttcccttactgtgtctggtctctgtcttcccagATTCCTGGACCTGCCTTGGGAAGAATTGCTGCTCGTTCATGTTGTAAACTGGGTCCCACTTCACCAGCTTCGACTGC--CAGCG-GTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCATTTGGCCAGATTACGCCGCTTTGATGCTGCTCAAgtgagtatagcatcaaacagggaccataattatgaggtggtaagcagggg Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGC----------------------------TGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tattttgttggtacttgttcccttactgtgtctggtctctgtcttcccagATTCCTGGACCTGCCTTGGGAAGAATTGCTGCTCGTTCATGTTGTAAACTGGGTCCCACTTCACCAGCTTCGACTGCCAGCGGTGAGTAGAACTTTTG-------------------------------GGGCACTTGTTCAGTTGCATTTGGCCAGATTACGCCGCTTTGATGCTGCTCAAgtgagtatagcatcaaacagggaccataattatgaggtggtaagcagggg Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tattttgttggtacttgttcccttactgtgtctggtctctgtcttcccagATTCCTGGACCTGCCTTGGGAAGAATTGCTGCTCGTTCATGTTGTAAACTGGGTCCCACTTCACCAG---CTTCGACTGCCAGCGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCATTTGGCCAGATTACGCCGCTTTGATGCTGCTCAAgtgagtatagcatcaaacagggaccataattatgaggtggtaagcagggg Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tattttgttggtacttgttcccttactgtgtctggtctctgtcttcccagATTCCTGGACCTGCCTTGGGAAGAATTGCTGCTCGTTCATGTTGTAAACTGGGTCCCACTTCACCAG---CTTCGACTGCCAGCGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCATTTGGCCAGATTACGCCGCTTTGATGCTGCTCAAgtgagtatagcatcaaacagggaccataattatgaggtggtaagcagggg Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tattttgttggtacttgttcccttactgtgtctggtctctgtcttcccagATTCCTGGACCTGCCTTGGGAAGAATTGCTGCTCGTTCATGTTGTAAACTGGGTCCCACTTCACCAGCTT---CGACTGCCAGCGGTGAGTAGAACTTTTGGGGCACTTGTTCAGTTGCATTTGGCCAGATTACGCCGCTTTGATGCTGCTCAAgtgagtatagcatcaaacagggaccataattatgaggtggtaagcagggg #### Fibp_ID1012_9 --> 0 - 2 Original Alignment GGAGAAG TTTGTGGAACCCTGCCGCTCTGACCACTGGCCA-CTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg CAAGAGGgtaagcagcagttagaatttgccccctccttatgccctttcagTTTGTAGAACCATGCCGGTCTGACCACTGGCCACCTGA-TGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCcggtaacgaaaagagagggacatatatttgtttggtctagtttaatatcaca Alignment from CESAR GGAGAAG TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg CAAGAGGgtgagtagcagttagaatttgccccctccttatgccctttcagTTTGTAGAACCATGCCGGTCTGACCACTGGCCACCTGATGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCcggtaacgaaaagagagggacatatatttgtttggtctagtttaatatcaca Alignment from Spaln_aa2Genome GGAGAAG TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG CAAGAGGgtaagcagcagttagaatttgccccctccttatgccctttcagTTTGTAGAACCATGCCGGTCTGACCACTGGCCACCTGATGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtaacgaaaagagagggacatatatttgtttggtctagtttaatatcaca Alignment from Spaln_nt2Genome GGAGAAG TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG CAAGAGGgtaagcagcagttagaatttgccccctccttatgccctttcagTTTGTAGAACCATGCCGGTCTGACCACTGGCCACCTGATGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtaacgaaaagagagggacatatatttgtttggtctagtttaatatcaca Alignment from Pairagon GGAGAAG TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG CAAGAGGgtaagcagcagttagaatttgccccctccttatgccctttcagTTTGTAGAACCATGCCGGTCTGACCACTGGCCACCTGATGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtaacgaaaagagagggacatatatttgtttggtctagtttaatatcaca Alignment from Exonerate_protein2genome GGAGAAG TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG CAAGAGGgtaagcagcagttagaatttgccccctccttatgccctttcagTTTGTAGAACCATGCCGGTCTGACCACTGGCCACCTGATGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtaacgaaaagagagggacatatatttgtttggtctagtttaatatcaca Alignment from Exonerate_coding2genome GGAGAAG TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG CAAGAGGgtaagcagcagttagaatttgccccctccttatgccctttcagTTTGTAGAACCATGCCGGTCTGACCACTGGCCACCTGATGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtaacgaaaagagagggacatatatttgtttggtctagtttaatatcaca Alignment from GeneWise GGAGAAG TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG CAAGAGGgtaagcagcagttagaatttgccccctccttatgccctttcagTTTGTAGAACCATGCCGGTCTGACCACTGGCCACCTGATGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGCATGGATTCCGgtaacgaaaagagagggacatatatttgtttggtctagtttaatatcaca #### Fkbp2_ID1946_3 --> 1 - 1 Original Alignment gATGTGTGAAGGG-GAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg tgttacttttggctagctttttttatacgctcacactcatctccccacagaATGTGTGAAGGACGAGAGGC-GAAGTTGTTCATCCTGTCAGAGTTAggtaagttaacataatatccagaacaagtttagacagtttaatggttgggg Alignment from CESAR gATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg tgttacttttggctagctttttttatacgctcacactcatctccccacagaATGTGTGAAGGACGAGAGGCGAAGTTGTTCATCCTGTCAGAGTTAggtaagttaacataatatccagaacaagtttagacagtttaatggttgggg Alignment from Spaln_aa2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG tgttacttttggctagctttttttatacgctcacactcatctccccacagAATGTGTGAAGGACGAGAGGCGAAGTTGTTCATCCTGTCAGAGTTAGgtaagttaacataatatccagaacaagtttagacagtttaatggttgggg Alignment from Spaln_nt2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG tgttacttttggctagctttttttatacgctcacactcatctccccacagAATGTGTGAAGGACGAGAGGCGAAGTTGTTCATCCTGTCAGAGTTAGgtaagttaacataatatccagaacaagtttagacagtttaatggttgggg Alignment from Pairagon GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG tgttacttttggctagctttttttatacgctcacactcatctccccacagAATGTGTGAAGGACGAGAGGCGAAGTTGTTCATCCTGTCAGAGTTAGgtaagttaacataatatccagaacaagtttagacagtttaatggttgggg Alignment from Exonerate_protein2genome tgttacttttggctagctttttttatacgctcacactcatctccccacagaatgtgtgaaggacgagaggcgaagttgttcatcctgtcagagttaggtaagttaacataatatccagaacaagtttagacagtttaatggttgggg Alignment from Exonerate_coding2genome tgttacttttggctagctttttttatacgctcacactcatctccccacagaatgtgtgaaggacgagaggcgaagttgttcatcctgtcagagttaggtaagttaacataatatccagaacaagtttagacagtttaatggttgggg Alignment from GeneWise GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG tgttacttttggctagctttttttatacgctcacactcatctccccacagAATGTGTGAAGGACGAGAGGCGAAGTTGTTCATCCTGTCAGAGTTAGgtaagttaacataatatccagaacaagtttagacagtttaatggttgggg #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACC-CAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ctttaggaggcggcaagtgggtatgaataggccccttgctccctccacagCCAGAGGAGACCCCAAGAAAAGG-TGAGAAAGATGAGCCAGGAGCTTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtactgaagtagccttgatgctaattttggaattgacatgtcttagatcc Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ctttaggaggcggcaagtgggtatgaataggccccttgctccctccacagCCAGAGGAGACCCCAAGAAAAGGTGAGAAAGATGAGCCAGGAGCTTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtactgaagtagccttgatgctaattttggaattgacatgtcttagatcc Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ctttaggaggcggcaagtgggtatgaataggccccttgctccctccacagCCAGAGGAGACCCCAAGAAAAGGTGAGAAAGATGAGCCAGGAGCTTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtactgaagtagccttgatgctaattttggaattgacatgtcttagatcc Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ctttaggaggcggcaagtgggtatgaataggccccttgctccctccacagCCAGAGGAGACCCCAAGAAAAGGTGAGAAAGATGAGCCAGGAGCTTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtactgaagtagccttgatgctaattttggaattgacatgtcttagatcc Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ctttaggaggcggcaagtgggtatgaataggccccttgctccctccacagCCAGAGGAGACCCCAAGAAAAGGTGAGAAAGATGAGCCAGGAGCTTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtactgaagtagccttgatgctaattttggaattgacatgtcttagatcc Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ctttaggaggcggcaagtgggtatgaataggccccttgctccctccacagCCAGAGGAGACCCCAAGAAAAGGTGAGAAAGATGAGCCAGGAGCTTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtactgaagtagccttgatgctaattttggaattgacatgtcttagatcc Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ctttaggaggcggcaagtgggtatgaataggccccttgctccctccacagCCAGAGGAGACCCCAAGAAAAGGTGAGAAAGATGAGCCAGGAGCTTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtactgaagtagccttgatgctaattttggaattgacatgtcttagatcc Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ctttaggaggcggcaagtgggtatgaataggccccttgctccctccacagCCAGAGGAGACCCCAAGAAAAGGTGAGAAAGATGAGCCAGGAGCTTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtactgaagtagccttgatgctaattttggaattgacatgtcttagatcc #### Ganab_ID2472_11 --> 0 - 1 Original Alignment ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTC-CTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg atgaggtctgccttaaacatctcatcagactgtctgtcctgtttccacagACACTATTTGGTAAGATGCTTGATTACCTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCCTAA-GCTTGGTCCTCCAGTTTTCGATGTCTTTAGACAGTATGCTAGTCTCACAggtaagtatgattctacttcctcacaaattaagtgacaaagcatttatact Alignment from CESAR ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg atgaggtctgccttaaacatctcatcagactgtctgtcctgtttccacagACACTATTTGGTAAGATGCTTGATTACCTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCCTAAGCTTGGTCCTCCAGTTTTCGATGTCTTTAGACAGTATGCTAGTCTCACAggtaagtatgattctacttcctcacaaattaagtgacaaagcatttatact Alignment from Spaln_aa2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG atgaggtctgccttaaacatctcatcagactgtctgtcctgtttccacagACACTATTTGGTAAGATGCTTGATTACCTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCCTAAGCTTGGTCCTCCAGTTTTCGATGTCTTTAGACAGTATGCTAGTCTCACAGgtaagtatgattctacttcctcacaaattaagtgacaaagcatttatact Alignment from Spaln_nt2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG atgaggtctgccttaaacatctcatcagactgtctgtcctgtttccacagACACTATTTGGTAAGATGCTTGATTACCTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCCTAAGCTTGGTCCTCCAGTTTTCGATGTCTTTAGACAGTATGCTAGTCTCACAGgtaagtatgattctacttcctcacaaattaagtgacaaagcatttatact Alignment from Pairagon ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG atgaggtctgccttaaacatctcatcagactgtctgtcctgtttccacagACACTATTTGGTAAGATGCTTGATTACCTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCCTAAGCTTGGTCCTCCAGTTTTCGATGTCTTTAGACAGTATGCTAGTCTCACAGgtaagtatgattctacttcctcacaaattaagtgacaaagcatttatact Alignment from Exonerate_protein2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG atgaggtctgccttaaacatctcatcagactgtctgtcctgtttccacagACACTATTTGGTAAGATGCTTGATTACCTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCCTAAGCTTGGTCCTCCAGTTTTCGATGTCTTTAGACAGTATGCTAGTCTCACAGgtaagtatgattctacttcctcacaaattaagtgacaaagcatttatact Alignment from Exonerate_coding2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG atgaggtctgccttaaacatctcatcagactgtctgtcctgtttccacagACACTATTTGGTAAGATGCTTGATTACCTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCCTAAGCTTGGTCCTCCAGTTTTCGATGTCTTTAGACAGTATGCTAGTCTCACAGgtaagtatgattctacttcctcacaaattaagtgacaaagcatttatact Alignment from GeneWise --------------------------------------------GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ATGAGGTCTGCCTTAAACATCTCATCAGACTGTCTGTCCTGTTTCCACAGACACTATTTGGTAAGATGCTTGATTACCTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCCTAAGCTTGGTCCTCCAGTTTTCGATGTCTTTAGACAGTATGCTAGTCTCACAGgtaagtatgattctacttcctcacaaattaagtgacaaagcatttatact #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAA-ACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc gaattggcattgtaacctaaacaattccttcctaatcttcctcatcctagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTT---CATGAATTGCAA---------------ATCAAGCACTCGGGATG-CTCTGACTACGAAGGCTGGAGTTGGCCAggtaacttccatgaccaatgaagtttttaaacactgtaaacttttacaggc Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc gaattggcattgtaacctaaacaattccttcctaatcttcctcatcctagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGAA------------------TTGCAAATCAAGCACTCGGGATGCTCTGACTACGAAGGCTGGAGTTGGCCAggtaacttccatgaccaatgaagttttgcctttctcctttccattgcaggc Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaattggcattgtaacctaaacaattccttcctaatcttcctcatcctagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGAA------------------TTGCAAATCAAGCACTCGGGATGCTCTGACTACGAAGGCTGGAGTTGGCCAGgtaacttccatgaccaatgaagtttttaaacactgtaaacttttacagGC Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATCAAGGT------AGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaattggcattgtaacctaaacaattccttcctaatcttcctcatcctagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTC---ATGAATTGC-AAATCA-------------AGCACTCGGGAT-GCTCTGACTACGAAGGCTGGAGTTGGCCAGgtaacttccatgaccaatgaagtttttaaacactgtaaacttttacagGC Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAA------ACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaattggcattgtaacctaaacaattccttcctaatcttcctcatcctagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCAT---GAATTGC--------------------AAATCAAGCACTCGGGAT-GCTCTGACTACGAAGGCTGGAGTTGGCCAGgtaacttccatgaccaatgaagtttttaaacactgtaaacttttacagGC Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaattggcattgtaacctaaacaattccttcctaatcttcctcatcctagCTAGTTGCTACTGTGGACCCACATATCAAGGTT------------AAAGTAGACTCTGGCTACCAGGTTCATGAATTGCAAATCAAGCACTCGGGATGCTCTGACTACGAAGGCTGGAGTTGGCCAGgtaacttccatgaccaatgaagtttttaaacactgtaaacttttacagGC Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaattggcattgtaacctaaacaattccttcctaatcttcctcatcctagCTAGTTGCTACTGTGGACCCACATATCAAGGTT------------AAAGTAGACTCTGGCTACCAGGTTCATGAATTGCAAATCAAGCACTCGGGATGCTCTGACTACGAAGGCTGGAGTTGGCCAGgtaacttccatgaccaatgaagtttttaaacactgtaaacttttacagGC Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaattggcattgtaacctaaacaattccttcctaatcttcctcatcctagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGAA------------------TTGCAAATCAAGCACTCGGGATGCTCTGACTACGAAGGCTGGAGTTGGCCAGgtaacttccatgaccaatgaagtttttaaacactgtaaacttttacagGC #### Ganab_ID2475_14 --> 2 - 0 Original Alignment Ag gcTCAGCTAGTTACCCTGAC-TTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AggtgagatccatgaccaatgaagttttgcctttctcctttccattgcaggcTCAGCTAGTTACCCTGACCTACACCA-TCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from CESAR Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AggtaacttccatgaccaatgaagttttgcctttctcctttccattgcaggcTCAGCTAGTTACCCTGACCTACACCATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Spaln_aa2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACCTACACCATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Spaln_nt2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACCTACACCATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Pairagon AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACCTACACCATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Exonerate_protein2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACCTACACCATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Exonerate_coding2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACCTACACCATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from GeneWise AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtgagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACCTACACCATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAG-CGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accaggaagcctggtttagattttttttaagaccacttttgttctttcagCATATGGCAACCACTGATGGCCTGATACAGCTGTTCAGGAG-GGTTGAGCGTTCATTTGTGTTGAGTCGGTCCTTTTCTTCAGGGTTCCAGCGCTTTggtcagattaaactagcatcaacactctactcacttctggttaacctgtca Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accaggaagcctggtttagattttttttaagaccacttttgttctttcagCATATGGCAACCACTGATGGCCTGATACAGCTGTTCAGGAGGGTTGAGCGTTCATTTGTGTTGAGTCGGTCCTTTTCTTCAGGGTTCCAGCGCTTTggtcagattaaactagcatcaacactctactcacttctggttaacctgtca Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagcctggtttagattttttttaagaccacttttgttctttcagCATATGGCAACCACTGATGGCCTGATACAGCTGTTCAGGAGGGTTGAGCGTTCATTTGTGTTGAGTCGGTCCTTTTCTTCAGGGTTCCAGCGCTTTGgtcagattaaactagcatcaacactctactcacttctggttaacctgtca Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagcctggtttagattttttttaagaccacttttgttctttcagCATATGGCAACCACTGATGGCCTGATACAGCTGTTCAGGAGGGTTGAGCGTTCATTTGTGTTGAGTCGGTCCTTTTCTTCAGGGTTCCAGCGCTTTGgtcagattaaactagcatcaacactctactcacttctggttaacctgtca Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagcctggtttagattttttttaagaccacttttgttctttcagCATATGGCAACCACTGATGGCCTGATACAGCTGTTCAGGAGGGTTGAGCGTTCATTTGTGTTGAGTCGGTCCTTTTCTTCAGGGTTCCAGCGCTTTGgtcagattaaactagcatcaacactctactcacttctggttaacctgtca Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagcctggtttagattttttttaagaccacttttgttctttcagCATATGGCAACCACTGATGGCCTGATACAGCTGTTCAGGAGGGTTGAGCGTTCATTTGTGTTGAGTCGGTCCTTTTCTTCAGGGTTCCAGCGCTTTGgtcagattaaactagcatcaacactctactcacttctggttaacctgtca Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagcctggtttagattttttttaagaccacttttgttctttcagCATATGGCAACCACTGATGGCCTGATACAGCTGTTCAGGAGGGTTGAGCGTTCATTTGTGTTGAGTCGGTCCTTTTCTTCAGGGTTCCAGCGCTTTGgtcagattaaactagcatcaacactctactcacttctggttaacctgtca Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagcctggtttagattttttttaagaccacttttgttctttcagCATATGGCAACCACTGATGGCCTGATACAGCTGTTCAGGAGGGTTGAGCGTTCATTTGTGTTGAGTCGGTCCTTTTCTTCAGGGTTCCAGCGCTTTGgtcagattaaactagcatcaacactctactcacttctggttaacctgtca #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg cagtgactaatatcttgtcggcgtagtctccagctttcttgacctcataggaGCTGTGTGGGCAGGGGACAACACTGCTGAATGGCGATCATT-GAAGATCTCTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTGTCATTCTGTGGAggtaagtgcagttatcatctgggctcttgcattgggttggtgtgttggtac Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg cagtgactaatatcttgtcggcgtagtctccagctttcttgacctcataggaGCTGTGTGGGCAGGGGACAACACTGCTGAATGGCGATCATTGAAGATCTCTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTGTCATTCTGTGGAggtaagtgcagttatcatctgggctcttgcattgggttggtgtgttggtac Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgactaatatcttgtcggcgtagtctccagctttcttgacctcatagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGCGATCATTGAAGATCTCTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTGTCATTCTGTGGAGgtaagtgcagttatcatctgggctcttgcattgggttggtgtgttggtac Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgactaatatcttgtcggcgtagtctccagctttcttgacctcatagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGCGATCATTGAAGATCTCTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTGTCATTCTGTGGAGgtaagtgcagttatcatctgggctcttgcattgggttggtgtgttggtac Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgactaatatcttgtcggcgtagtctccagctttcttgacctcatagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGCGATCA-TTGAAGATCTCTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTGTCATTCTGTGGAGgtaagtgcagttatcatctgggctcttgcattgggttggtgtgttggtac Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgactaatatcttgtcggcgtagtctccagctttcttgacctcatagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGCGATCATTGAAGATCTCTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTGTCATTCTGTGGAGgtaagtgcagttatcatctgggctcttgcattgggttggtgtgttggtac Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgactaatatcttgtcggcgtagtctccagctttcttgacctcatagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGCGATCATTGAAGATCTCTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTGTCATTCTGTGGAGgtaagtgcagttatcatctgggctcttgcattgggttggtgtgttggtac Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG cagtgactaatatcttgtcggcgtagtctccagctttcttgacctcatagGAGCTGTGTGGGCAGGGGACAACACTGCTGAATGGCGATCATTGAAGATCTCTATCCATATGTGCCTCAGCTTGGCATTGGTGGGGCTGTCATTCTGTGGAGgtaagtgcagttatcatctgggctcttgcattgggttggtgtgttggtac #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCC-CACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctaggtGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCCATGGTGTGC-GGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccaccttccatc Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctaggtGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCCATGGTGTGCGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccagcatgctga Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCCATGGTGTGCGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccaccttccatc Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCCATGGTGTGCGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccaccttccatc Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGG-CCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCCATGGTGTGC-GGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccaccttccatc Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCCATGGTGTGCGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccaccttccatc Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCCATGGTGTGCGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccaccttccatc Alignment from GeneWise ----------------------------------------------CTTGGTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA-------------------------------------------------- GGAACAGGCTGCTCAGATGTGTCCAAAGTGCTCTCTTCTCATTGATCTAGGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCCATGGTGTGCGGTTTATTTGCCCGGCCAAGAAGAAGTAAGTTGCCAAATGGCAATACATAGGTGTGTCAGGAGCCACCTTCCATC #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCT-CGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatggcataagagaaataaaattatgaccaatttatttttttattttagATCCCTGTGTTCCAGTGTGGTGGCACAATTGTCCCTCCGATGGA-GCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCTTTTTGTTGCTCTCAGTCCCCAGgtgagtatttaatcaccaggactgggttcattatagatttatcttaaacc Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatggcataagagaaataaaattatgaccaatttatttttttattttagATCCCTGTGTTCCAGTGTGGTGGCACAATTGTCCCTCCGATGGAGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCTTTTTGTTGCTCTCAGTCCCCAGgtgagtatttaatcaccaggactgggttcattatagatttatcttaaacc Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatggcataagagaaataaaattatgaccaatttatttttttattttagATCCCTGTGTTCCAGTGTGGTGGCACAATTGTCCCTCCGATGGAGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCTTTTTGTTGCTCTCAGTCCCCAGgtgagtatttaatcaccaggactgggttcattatagatttatcttaaacc Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatggcataagagaaataaaattatgaccaatttatttttttattttagATCCCTGTGTTCCAGTGTGGTGGCACAATTGTCCCTCCGATGGAGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCTTTTTGTTGCTCTCAGTCCCCAGgtgagtatttaatcaccaggactgggttcattatagatttatcttaaacc Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCT-CGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatggcataagagaaataaaattatgaccaatttatttttttattttagATCCCTGTGTTCCAGTGTGGTGGCACAATTGTCCCTCCGATGGA-GCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCTTTTTGTTGCTCTCAGTCCCCAGgtgagtatttaatcaccaggactgggttcattatagatttatcttaaacc Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatggcataagagaaataaaattatgaccaatttatttttttattttagATCCCTGTGTTCCAGTGTGGTGGCACAATTGTCCCTCCGATGGAGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCTTTTTGTTGCTCTCAGTCCCCAGgtgagtatttaatcaccaggactgggttcattatagatttatcttaaacc Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatggcataagagaaataaaattatgaccaatttatttttttattttagATCCCTGTGTTCCAGTGTGGTGGCACAATTGTCCCTCCGATGGAGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCTTTTTGTTGCTCTCAGTCCCCAGgtgagtatttaatcaccaggactgggttcattatagatttatcttaaacc Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatggcataagagaaataaaattatgaccaatttatttttttattttagATCCCTGTGTTCCAGTGTGGTGGCACAATTGTCCCTCCGATGGAGCGTGTCAGGCGCCCTTCAGACTGCATGAAGGATGATCCTATCACTCTTTTTGTTGCTCTCAGTCCCCAGgtgagtatttaatcaccaggactgggttcattatagatttatcttaaacc #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCC-CGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg acccagctgcaagcatggggagaatgatataaatttctgtatccatttagctGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGGATTCTCCGCGGGCTTT-CTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGCAAACCAGGATGCAGAGATCTAGAAGAATCAGGTGATTCTAGTcgtaattaacacaatacattcaactggcttgaactaccagtcaacgtttta Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg acccagctgcaagcatggggagaatgatataaatttctgtatccatttagctGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGGATTCTCCGCGGGCTTTCTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGCAAACCAGGATGCAGAGATCTAGAAGAATCAGGTGATTCTAGTcgtaattaacacaatacattcaactggcttgaactaccagtcaacgtttta Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG acccagctgcaagcatggggagaatgatataaatttctgtatccatttagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGGATTCTCCGCGGGCTTTCTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGCAAACCAGGATGCAGAGATCTAGAAGAATCAGGTGATTCTAGTCgtaattaacacaatacattcaactggcttgaactaccagtcaacgtttta Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGC-CCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG acccagctgcaagcatggggagaatgatataaatttctgtatccatttagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGGATTCTCCGCGGGCTT-TCTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGCAAACCAGGATGCAGAGATCTAGAAGAATCAGGTGATTCTAGTCgtaattaacacaatacattcaactggcttgaactaccagtcaacgtttta Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGC-CCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG acccagctgcaagcatggggagaatgatataaatttctgtatccatttagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGGATTCTCCGCGGGCTTTCTTTCCCAC-TGGAGGGTGGTTG---ACAGATTATGGCAAACCAGGATGCAGAGATCTAGAAGAATCAGGTGATTCTAGTCgtaattaacacaatacattcaactggcttgaactaccagtcaacgtttta Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG acccagctgcaagcatggggagaatgatataaatttctgtatccatttagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGGATTCTCCGCGGGCTTTCTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGCAAACCAGGATGCAGAGATCTAGAAGAATCAGGTGATTCTAGTCgtaattaacacaatacattcaactggcttgaactaccagtcaacgtttta Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG acccagctgcaagcatggggagaatgatataaatttctgtatccatttagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGGATTCTCCGCGGGCTTTCTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGCAAACCAGGATGCAGAGATCTAGAAGAATCAGGTGATTCTAGTCgtaattaacacaatacattcaactggcttgaactaccagtcaacgtttta Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG acccagctgcaagcatggggagaatgatataaatttctgtatccatttagCTGAAGGAGCAACCATTGATGGGAAATCCACAGGGGTTGCCTTGGATTCTCCGCGGGCTTTCTTTCCCACTGGAGGGTGGTTG---ACAGATTATGGCAAACCAGGATGCAGAGATCTAGAAGAATCAGGTGATTCTAGTCgtaattaacacaatacattcaactggcttgaactaccagtcaacgtttta #### Gbf1_ID9804_23 --> 0 - 0 Original Alignment TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGC-TGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ctgcttttccagtggtgactgggcaatctgaagccatgtgctttttgcagTCTATAGAAAACCTTCCCAGTGTTTTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGAGAGGGGCTGGAAGA-TATCATGGAGGCCATGTTGCAGCTTTTCCGAGCTCAACTTTTACCTAAAGCTATGGTTGAGgtgagtgcaaatcaaggctccttgtcatactatagccttgtgtcccacta Alignment from CESAR TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ctgcttttccagtggtgactgggcaatctgaagccatgtgctttttgcagTCTATAGAAAACCTTCCCAGTGTTTTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGAGAGGGGCTGGAAGATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCTCAACTTTTACCTAAAGCTATGGTTGAGgtgagtgcaaatcaaggctccttgtcatactatagccttgtgtcccacta Alignment from Spaln_aa2Genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ctgcttttccagtggtgactgggcaatctgaagccatgtgctttttgcagTCTATAGAAAACCTTCCCAGTGTTTTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGAGAGGGGCTGGAAGATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCTCAACTTTTACCTAAAGCTATGGTTGAGgtgagtgcaaatcaaggctccttgtcatactatagccttgtgtcccacta Alignment from Spaln_nt2Genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ctgcttttccagtggtgactgggcaatctgaagccatgtgctttttgcagTCTATAGAAAACCTTCCCAGTGTTTTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGAGAGGGGCTGGAAGATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCTCAACTTTTACCTAAAGCTATGGTTGAGgtgagtgcaaatcaaggctccttgtcatactatagccttgtgtcccacta Alignment from Pairagon TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGA-GGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ctgcttttccagtggtgactgggcaatctgaagccatgtgctttttgcagTCTATAGAAAACCTTCCCAGTGTTTTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGAGAGGGGCTGGAAG-ATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCTCAACTTTTACCTAAAGCTATGGTTGAGgtgagtgcaaatcaaggctccttgtcatactatagccttgtgtcccacta Alignment from Exonerate_protein2genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ctgcttttccagtggtgactgggcaatctgaagccatgtgctttttgcagTCTATAGAAAACCTTCCCAGTGTTTTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGAGAGGGGCTGGAAGATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCTCAACTTTTACCTAAAGCTATGGTTGAGgtgagtgcaaatcaaggctccttgtcatactatagccttgtgtcccacta Alignment from Exonerate_coding2genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ctgcttttccagtggtgactgggcaatctgaagccatgtgctttttgcagTCTATAGAAAACCTTCCCAGTGTTTTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGAGAGGGGCTGGAAGATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCTCAACTTTTACCTAAAGCTATGGTTGAGgtgagtgcaaatcaaggctccttgtcatactatagccttgtgtcccacta Alignment from GeneWise TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ctgcttttccagtggtgactgggcaatctgaagccatgtgctttttgcagTCTATAGAAAACCTTCCCAGTGTTTTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGAGAGGGGCTGGAAGATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCTCAACTTTTACCTAAAGCTATGGTTGAGgtgagtgcaaatcaaggctccttgtcatactatagccttgtgtcccacta #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGG-GAGGAGACACCATCCAACcg acttagcagttgcttcacccatagacagggtgacactttattctttgtagGTGGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATCAAGG-AATACCATCCAACcagtgtgttttggttaatatgtgggccagaggaagcagatactatcagtagt Alignment from CESAR GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg acttagcagttgcttcacccatagacagggtgacactttattctttgtagGTGGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATCAAGGAATACCATCCAACcagtgtgttttggttaatatgtgggccagaggaagcagatactatcagtagt Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG acttagcagttgcttcacccatagacagggtgacactttattctttgtagGTGGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATCAAGGAATACCATCCAACCAgtgtgttttggttaatatgtgggccagaggaagcagatactatcagtagt Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG acttagcagttgcttcacccatagacagggtgacactttattctttgtagGTGGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATCAAGGAATACCATCCAACCAgtgtgttttggttaatatgtgggccagaggaagcagatactatcagtagt Alignment from Pairagon GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG acttagcagttgcttcacccatagacagggtgacactttattctttgtagGTGGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATCAAGGAATACCATCCAACCAgtgtgttttggttaatatgtgggccagaggaagcagatactatcagtagt Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG acttagcagttgcttcacccatagacagggtgacactttattctttgtagGTGGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATCAAGGAATACCATCCAACCAgtgtgttttggttaatatgtgggccagaggaagcagatactatcagtagt Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG acttagcagttgcttcacccatagacagggtgacactttattctttgtagGTGGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATCAAGGAATACCATCCAACCAgtgtgttttggttaatatgtgggccagaggaagcagatactatcagtagt Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG acttagcagttgcttcacccatagacagggtgacactttattctttgtagGTGGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATCAAGGAATACCATCCAACCAgtgtgttttggttaatatgtgggccagaggaagcagatactatcagtagt #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAG-TCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG cagaggaagcagatactatcagtagtgtaaattatttcattctttccaagaGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACCTTGAGTGGCCCTCAACAGCTCAA-TGTCCAGGGTCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCTTTAGATTGTATTAAGgtaacgtgatgacccaatggcaccgattttatagccaagatacctattca Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG cagaggaagcagatactatcagtagtgtaaattatttcattctttccaagaGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACCTTGAGTGGCCCTCAACAGCTCAATGTCCAGGGTCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCTTTAGATTGTATTAAGgtaacgtgatgacccaatggcaccgattttatagccaagatacctattca Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG cagaggaagcagatactatcagtagtgtaaattatttcattctttccaagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACCTTGAGTGGCCCTCAACAGCTCAATGTCCAGGGTCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCTTTAGATTGTATTAAGgtaacgtgatgacccaatggcaccgattttatagccaagatacctattca Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG cagaggaagcagatactatcagtagtgtaaattatttcattctttccaagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACCTTGAGTGGCCCTCAACAGCTCAATGTCCAGGGTCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCTTTAGATTGTATTAAGgtaacgtgatgacccaatggcaccgattttatagccaagatacctattca Alignment from Pairagon -------------------------------------------------GAGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG CAGAGGAAGCAGATACTATCAGTAGTGTAAATTATTTCATTCTTTCCAAGAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACCTTGAGTGGCCCTCAACAGCTCAATGTCCAGGGTCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCTTTAGATTGTATTAAGgtaacgtgatgacccaatggcaccgattttatagccaagatacctattca Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG cagaggaagcagatactatcagtagtgtaaattatttcattctttccaagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACCTTGAGTGGCCCTCAACAGCTCAATGTCCAGGGTCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCTTTAGATTGTATTAAGgtaacgtgatgacccaatggcaccgattttatagccaagatacctattca Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG cagaggaagcagatactatcagtagtgtaaattatttcattctttccaagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACCTTGAGTGGCCCTCAACAGCTCAATGTCCAGGGTCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCTTTAGATTGTATTAAGgtaacgtgatgacccaatggcaccgattttatagccaagatacctattca Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG cagaggaagcagatactatcagtagtgtaaattatttcattctttccaagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACCTTGAGTGGCCCTCAACAGCTCAATGTCCAGGGTCCTTCTACAGAGAACCAGGAGGCCAAAAGGGTGGCTTTAGATTGTATTAAGgtaacgtgatgacccaatggcaccgattttatagccaagatacctattca #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG atagccaagatacctattcaaaagggcttggattcctgccttgcccttagCAGTGCGACCCACGAAAAGATGA-CACAGAAAGCAAGTTCCTCCAGCTGGAATCTCTGCAGGAACTCATGAAGgtaccctatgaacagatcatggaaaaatagaattatactggtgcagtgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG atagccaagatacctattcaaaagggcttggattcctgccttgcccttagCAGTGCGACCCACGAAAAGATGACACAGAAAGCAAGTTCCTCCAGCTGGAATCTCTGCAGGAACTCATGAAGgtaccctatgaacagatcatggaaaaatagaattatactggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG atagccaagatacctattcaaaagggcttggattcctgccttgcccttagCAGTGCGACCCACGAAAAGATGACACAGAAAGCAAGTTCCTCCAGCTGGAATCTCTGCAGGAACTCATGAAGgtaccctatgaacagatcatggaaaaatagaattatactggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG atagccaagatacctattcaaaagggcttggattcctgccttgcccttagCAGTGCGACCCACGAAAAGATGA-CACAGAAAGCAAGTTCCTCCAGCTGGAATCTCTGCAGGAACTCATGAAGgtaccctatgaacagatcatggaaaaatagaattatactggtgcagtgca Alignment from Pairagon CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG atagccaagatacctattcaaaagggcttggattcctgccttgcccttagCAGTGCGACCCACGAAAAGATGA-CACAGAAAGCAAGTTCCTCCAGCTGGAATCTCTGCAGGAACTCATGAAGgtaccctatgaacagatcatggaaaaatagaattatactggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG atagccaagatacctattcaaaagggcttggattcctgccttgcccttagCAGTGCGACCCACGAAAAGATGACACAGAAAGCAAGTTCCTCCAGCTGGAATCTCTGCAGGAACTCATGAAGgtaccctatgaacagatcatggaaaaatagaattatactggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG atagccaagatacctattcaaaagggcttggattcctgccttgcccttagCAGTGCGACCCACGAAAAGATGACACAGAAAGCAAGTTCCTCCAGCTGGAATCTCTGCAGGAACTCATGAAGgtaccctatgaacagatcatggaaaaatagaattatactggtgcagtgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG atagccaagatacctattcaaaagggcttggattcctgccttgcccttagCAGTGCGACCCACGAAAAGATGACACAGAAAGCAAGTTCCTCCAGCTGGAATCTCTGCAGGAACTCATGAAGgtaccctatgaacagatcatggaaaaatagaattatactggtgcagtgca #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAA-GAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAACGAGACATATG-TGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACaggtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAA-GAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAACGAGACATAT-GTGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACaggtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAACGAGACATATGTGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAACGAGACATATGTGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAA-GAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAACGAGACATATG-TGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAACGAGACATATGTGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAACGAGACATATGTGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAACGAGACATATGTGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCC-CTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccaggaATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCCTTGACAT-TCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccaggaATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCCTTGACATTCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCCTTGACATTCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCT-GACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCCTTGACAT-TCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCC-TGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCCTTGACAT-TCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCCTTGACATTCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Exonerate_coding2genome gaacacttggtgactttcacaattgctctgcccttttctctctctcccaggaattgcttgcttatgctgtgatgctcgacgccaggtgcggatgcaggcccttgacattctccaacatgcacttcttgtccctgacctgcagcaactagatgccctggagtgggagtcttgttcaaacaaggtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG-------------------------------------------------- gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCCTTGACATTCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGGTAGGTGTAACTCATAATAGATGCTGGTTCACAGCATACACCCCAAAGGG #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAA-AATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacagcatacaccccaaagggttggtaaggctcacccttgtccctacagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGCAATA-TAGTCCTGCAGAGGTAGGTGGGATGAAAGAGACACGGATGCGGGCATCCACACTCCTTTCAAAGgtaccataccttgtatgcacactgacatgattgctatctcatcactgtag Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacagcatacaccccaaagggttggtaaggctcacccttgtccctacagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGCAATATAGTCCTGCAGAGGTAGGTGGGATGAAAGAGACACGGATGCGGGCATCCACACTCCTTTCAAAGgtaccataccttgtatgcacactgacatgattgctatctcatcactgtag Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacagcatacaccccaaagggttggtaaggctcacccttgtccctacagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGCAATATAGTCCTGCAGAGGTAGGTGGGATGAAAGAGACACGGATGCGGGCATCCACACTCCTTTCAAAGgtaccataccttgtatgcacactgacatgattgctatctcatcactgtag Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAA-AATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacagcatacaccccaaagggttggtaaggctcacccttgtccctacagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGCAATAT-AGTCCTGCAGAGGTAGGTGGGATGAAAGAGACACGGATGCGGGCATCCACACTCCTTTCAAAGgtaccataccttgtatgcacactgacatgattgctatctcatcactgtag Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAA-AATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacagcatacaccccaaagggttggtaaggctcacccttgtccctacagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGCAATAT-AGTCCTGCAGAGGTAGGTGGGATGAAAGAGACACGGATGCGGGCATCCACACTCCTTTCAAAGgtaccataccttgtatgcacactgacatgattgctatctcatcactgtag Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacagcatacaccccaaagggttggtaaggctcacccttgtccctacagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGCAATATAGTCCTGCAGAGGTAGGTGGGATGAAAGAGACACGGATGCGGGCATCCACACTCCTTTCAAAGgtaccataccttgtatgcacactgacatgattgctatctcatcactgtag Alignment from Exonerate_coding2genome tcacagcatacaccccaaagggttggtaaggctcacccttgtccctacaggtgctatttccccttctttccaagctcttagagcaatatagtcctgcagaggtaggtgggatgaaagagacacggatgcgggcatccacactcctttcaaaggtaccataccttgtatgcacactgacatgattgctatctcatcactgtag Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG tcacagcatacaccccaaagggttggtaaggctcacccttgtccctacagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGCAATATAGTCCTGCAGAGGTAGGTGGGATGAAAGAGACACGGATGCGGGCATCCACACTCCTTTCAAAGgtaccataccttgtatgcacactgacatgattgctatctcatcactgtag #### Gif_ID3278_2 --> 2 - 1 Original Alignment ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTC-ATGGCCAGTGACAGTGCAg agtcattctgtggagctgcacacagtagaatgtcctgggtcttcccacagctGTTCCCCTAGATCAACATCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAACTCAGTAACTGACTCCGACTTCCCTAACCCAACCATG---ATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGGCCTCAAAAACTCCTGACTTACCAACTACATGG-CAGTGAAAGTGCAggtgagacactaagggtacatttttaccatgagtcttttatgttcgcccaa Alignment from CESAR ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAg agtcattctgtggagctgcacacagtagaatgtcctgggtcttcccacagctGTTCCCCTAGATCAACATCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAACTCAGTAACTGACTCCGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGGCCTCAAAAACTCCTGACTTACCAACTACATGGCAGTGAAAGTGCAggtgagacactaagggtacatttttaccatgagtcttttatgttcgcccaa Alignment from Spaln_aa2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agtcattctgtggagctgcacacagtagaatgtcctgggtcttcccacagCTGTTCCCCTAGATCAACATCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAACTCAGTAACTGACTCCGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGGCCTCAAAAACTCCTGACTTACCAACTACATGGCAGTGAAAGTGCAGgtgagacactaagggtacatttttaccatgagtcttttatgttcgcccaa Alignment from Spaln_nt2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCT-CATGGCCAGTGACAGTGCAG agtcattctgtggagctgcacacagtagaatgtcctgggtcttcccacagCTGTTCCCCTAGATCAACATCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAACTCAGTAACTGACTCCGACTTCCCTAACCCAACCA---TGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGGCCTCAAAAACTCCTGACTTACCAACTACATGG-CAGTGAAAGTGCAGgtgagacactaagggtacatttttaccatgagtcttttatgttcgcccaa Alignment from Pairagon CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCT-CATGGCCAGTGACAGTGCAG agtcattctgtggagctgcacacagtagaatgtcctgggtcttcccacagCTGTTCCCCTAGATCAACATCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAACTCAGTAACTGACTCCGACTTCCCTAACCCAACCA---TGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGGCCTCAAAAACTCCTGACTTACCAACTACATGG-CAGTGAAAGTGCAGgtgagacactaagggtacatttttaccatgagtcttttatgttcgcccaa Alignment from Exonerate_protein2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agtcattctgtggagctgcacacagtagaatgtcctgggtcttcccacagCTGTTCCCCTAGATCAACATCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAACTCAGTAACTGACTCCGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGGCCTCAAAAACTCCTGACTTACCAACTACATGGCAGTGAAAGTGCAGgtgagacactaagggtacatttttaccatgagtcttttatgttcgcccaa Alignment from Exonerate_coding2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agtcattctgtggagctgcacacagtagaatgtcctgggtcttcccacagCTGTTCCCCTAGATCAACATCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAACTCAGTAACTGACTCCGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGGCCTCAAAAACTCCTGACTTACCAACTACATGGCAGTGAAAGTGCAGgtgagacactaagggtacatttttaccatgagtcttttatgttcgcccaa Alignment from GeneWise CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agtcattctgtggagctgcacacagtagaatgtcctgggtcttcccacagCTGTTCCCCTAGATCAACATCCTTGGGTTGAAGGCTTACAAACACTCATGGAAAACTCAGTAACTGACTCCGACTTCCCTAACCCAACC---ATGATTGCCAAGAACCTGGCTGGTGCATACATTGTGGGGCCTCAAAAACTCCTGACTTACCAACTACATGGCAGTGAAAGTGCAGgtgagacactaagggtacatttttaccatgagtcttttatgttcgcccaa #### Gldc_ID6401_14 --> 0 - 0 Original Alignment GGATCCTGCACCATGAAGCTCAAT-AGCTCCTCCGAACTTGCA gtatgcctatagcagtgctgactatgtctttgaacttgtgaatttctcagGGATCTTGCACCATGAAGCTTAATCAGCT-AGCCGAGCTTGGTgtctgtccagtaattaccatacgatgtcatgcttcacttcataagttcaa Alignment from CESAR GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA gtatgcctatagcagtgctgactatgtctttgaacttgtgaatttctcagGGATCTTGCACCATGAAGCTTAATCAGCTAGCCGAGCTTGGTgtctgtccagtaattaccatacgatgtcatgcttcacttcataagttcaa Alignment from Spaln_aa2Genome GGGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGC gtatgcctatagcagtgctgactatgtctttgaacttgtgaatttctcagGGATCTTGCACCATGAAGCTTAATCAGCTAGCCGAGCTTGGTgtctgtccagtaattaccatacgatgtcatgcttcacttcataagttcaa Alignment from Spaln_nt2Genome GGATCCTGCACCATGAAGCTCAAT-AGCTCCTCCGAACTTG gtatgcctatagcagtgctgactatgtctttgaacttgtgaatttctcagGGATCTTGCACCATGAAGCTTAATCAGCT-AGCCGAGCTTGgtgtctgtccagtaattaccatacgatgtcatgcttcacttcataagttcaa Alignment from Pairagon GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA gtatgcctatagcagtgctgactatgtctttgaacttgtgaatttctcagGGATCTTGCACCATGAAGCTTAAT----------------CAgctagccgagcttggtgtctgtccagtaattaccatacgatgtcatgcttcacttcataagttcaa Alignment from Exonerate_protein2genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA gtatgcctatagcagtgctgactatgtctttgaacttgtgaatttctcagGGATCTTGCACCATGAAGCTTAATCAGCTAGCCGAGCTTGGTgtctgtccagtaattaccatacgatgtcatgcttcacttcataagttcaa Alignment from Exonerate_coding2genome gtatgcctatagcagtgctgactatgtctttgaacttgtgaatttctcagggatcttgcaccatgaagcttaatcagctagccgagcttggtgtctgtccagtaattaccatacgatgtcatgcttcacttcataagttcaa Alignment from GeneWise GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA gtatgcctatagcagtgctgactatgtctttgaacttgtgaatttctcagGGATCTTGCACCATGAAGCTTAATCAGCTAGCCGAGCTTGGTgtctgtccagtaattaccatacgatgtcatgcttcacttcataagttcaa #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTC-GTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagtTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCCTTACACA-TATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagtTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCCTTACACATATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Spaln_aa2Genome GCTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACT cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCCTTACACATATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCCTTACACATATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTT-CACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCCTTACACA-TATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCCTTACACATATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Exonerate_coding2genome CTATCACTCAGA cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagttaccacttagaaactaaccttgtcccatacatgaagagattggaaaaccgagatatttccctccttacacatatgatccctctagtaagtgcagtctgacttgttaccatgtacattggtatCTATCAGGTGTG Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCCTTACACATATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTC-CAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCCAGGGTTTCC-TAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCCAGGGTTTCCTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCCAGGGTTTCCTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCT-CCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCCAGGGTTTCCT-AATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACC-TCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCCAGGGTTTCCT-AATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCCAGGGTTTCCTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCCAGGGTTTCCTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCCAGGGTTTCCTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc #### Gpam_ID11532_17 --> 0 - 0 Original Alignment CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAAC-TGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG actagattctcatataccaacaagtgtctgtaacctcatcaattttacagCAAGATGATCAG---GATGTTAGTCCAAGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAGCTCAACCTGGAGAA-TGATGAGGACGATGAGGATAGTGATTATGGTGAAGAGCACCAAGATTGTTATCTAAAAgtaaggggtagtggacatgcaagaactgctaataatcttaagagagaatc Alignment from CESAR CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG actagattctcatataccaacaagtgtctgtaacctcatcaattttacagCAAGATGATCAG---GATGTTAGTCCAAGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAGCTCAACCTGGAGAATGATGAGGACGATGAGGATAGTGATTATGGTGAAGAGCACCAAGATTGTTATCTAAAAgtaaggggtagtggacatgcaagaactgctaataatcttaagagagaatc Alignment from Spaln_aa2Genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG actagattctcatataccaacaagtgtctgtaacctcatcaattttacagCAAGATGATCAG---GATGTTAGTCCAAGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAGCTCAACCTGGAGAATGATGAGGACGATGAGGATAGTGATTATGGTGAAGAGCACCAAGATTGTTATCTAAAAgtaaggggtagtggacatgcaagaactgctaataatcttaagagagaatc Alignment from Spaln_nt2Genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG actagattctcatataccaacaagtgtctgtaacctcatcaattttacagCAAGATGATCAG---GATGTTAGTCCAAGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAGCTCAACCTGGAGAATGATGAGGACGATGAGGATAGTGATTATGGTGAAGAGCACCAAGATTGTTATCTAAAAgtaaggggtagtggacatgcaagaactgctaataatcttaagagagaatc Alignment from Pairagon CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAA-CTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG actagattctcatataccaacaagtgtctgtaacctcatcaattttacagCAAGATGATCAG---GATGTTAGTCCAAGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAGCTCAACCTGGAGAA-TGATGAGGACGATGAGGATAGTGATTATGGTGAAGAGCACCAAGATTGTTATCTAAAAgtaaggggtagtggacatgcaagaactgctaataatcttaagagagaatc Alignment from Exonerate_protein2genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG actagattctcatataccaacaagtgtctgtaacctcatcaattttacagCAAGATGATCAG---GATGTTAGTCCAAGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAGCTCAACCTGGAGAATGATGAGGACGATGAGGATAGTGATTATGGTGAAGAGCACCAAGATTGTTATCTAAAAgtaaggggtagtggacatgcaagaactgctaataatcttaagagagaatc Alignment from Exonerate_coding2genome actagattctcatataccaacaagtgtctgtaacctcatcaattttacagcaagatgatcaggatgttagtccaagtcttgcagaacagcagtgggacaaaaagcttccagagctcaacctggagaatgatgaggacgatgaggatagtgattatggtgaagagcaccaagattgttatctaaaagtaaggggtagtggacatgcaagaactgctaataatcttaagagagaatc Alignment from GeneWise CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG actagattctcatataccaacaagtgtctgtaacctcatcaattttacagCAAGATGATCAG---GATGTTAGTCCAAGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAGCTCAACCTGGAGAATGATGAGGACGATGAGGATAGTGATTATGGTGAAGAGCACCAAGATTGTTATCTAAAAgtaaggggtagtggacatgcaagaactgctaataatcttaagagagaatc #### Gpha2_ID1505_2 --> 2 - 0 Original Alignment ccTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGC-CAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGT---GAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG tgataggtagtttattgtagtttgtcaatctatctctgtttcctccacagcaTTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAAAATGTCCAGGCAT-CCAATTATCACAGGGTTGTGTAGGATATTGTTGTGAGTCCAGTGCTTTTCCTTCCCAGTATTCCATATTGGTGGTCAGTGGTTATTGGCACAATACTACGTCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtggtgggcggtggcatataactttgtccaaagacacctcatcaat Alignment from CESAR ccTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACAC---TGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG tgataggtagtttattgtagtttgtcaatctatctctgtttcctccacagcaTTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAAAATGTCCAGGCATCCAATTATCACAGGGTTGTGTAGGATATTGTTGTGAGTCCAGTGCTTTTCCTTCCCAGTATTCCATATTGGTGGTCAGTGGTTATTGGCACAATACTACGTCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtggtgggcggtggcatataactttgtccaaagacacctcatcaat Alignment from Spaln_aa2Genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACAC---TGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG tgataggtagtttattgtagtttgtcaatctatctctgtttcctccacagCATTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAAAATGTCCAGGCATCCAATTATCACAGGGTTGTGTAGGATATTGTTGTGAGTCCAGTGCTTTTCCTTCCCAGTATTCCATATTGGTGGTCAGTGGTTATTGGCACAATACTACGTCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtggtgggcggtggcatataactttgtccaaagacacctcatcaat Alignment from Spaln_nt2Genome CCTTCAATGTGACGG---TGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGT---GAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG tgataggtagtttattgtagtttgtcaatctatctctgtttcctccacagCATTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAAAATGTCCAGGCATCCAATTATCACAGGGTTGTGTAGGATATTGTTGTGAGTCCAGTGCTTTTCCTTCCCAGTATTCCATATTGGTGGTCAGTGGTTATTGGCACAATACTACGTCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtggtgggcggtggcatataactttgtccaaagacacctcatcaat Alignment from Pairagon CGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACA---CTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG tgataggtagtttattgtagtttgtcaatctatctctgtttcctccacagcattcaatattgcagCAGTGCATAGTGACCACCTTGGAAAATGTCCAGGCATCCAATTATCACAGGGTTGTGTAGGATATTGTTGTGAGTCCAGTGCTTTTCCTTCCCAGTATTCCATATTGGTGGTCAGTGGTTATTGGCACAATACTACGTCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtggtgggcggtggcatataactttgtccaaagacacctcatcaat Alignment from Exonerate_protein2genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACAC---TGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG tgataggtagtttattgtagtttgtcaatctatctctgtttcctccacagCATTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAAAATGTCCAGGCATCCAATTATCACAGGGTTGTGTAGGATATTGTTGTGAGTCCAGTGCTTTTCCTTCCCAGTATTCCATATTGGTGGTCAGTGGTTATTGGCACAATACTACGTCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtggtgggcggtggcatataactttgtccaaagacacctcatcaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTTCAATGTGACG---GTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGT---GAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG tgataggtagtttattgtagtttgtcaatctatctctgtttcctccacagCATTCAATATTGCAGCAGTGCATAGTGACCACCTTGGAAAATGTCCAGGCATCCAATTATCACAGGGTTGTGTAGGATATTGTTGTGAGTCCAGTGCTTTTCCTTCCCAGTATTCCATATTGGTGGTCAGTGGTTATTGGCACAATACTACGTCATCATCACCCTGCTGCACTATCAGCAGTCTTAGGAAGgtgagtggtgggcggtggcatataactttgtccaaagacacctcatcaat #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGT-CGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggttggctatagctgctgcaaggtgtcccctgacctcatttgtgttccaggCTGGCTGTTCAAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTTAATGTACTGTGTGCAGTTTTATCATGCCAGCGTCAGCAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGT------GCTCTTGCTGGATGCCTCTGCCTAGTAGCCCGTCCGTGCCC-AACGACCAGCATCTACTTAGATGCAAAGgtgagtgtgtaatatagatgtggcattgttggatttgtggacagaattct Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggttggctatagctgctgcaaggtgtcccctgacctcatttgtgttccaggCTGGCTGTTCAAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTTAATGTACTGTGTGCAGTTTTATCATGCCAGCGTCAGCAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCT------CTTGCTGGATGCCTCTGCCTAGTAGCCCGTCCGTGCCCAACGACCAGCATCTACTTAGATGCAAAGgtgagtgtgtaatatagatgtggcattgttggatttgtggacagaattct Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggttggctatagctgctgcaaggtgtcccctgacctcatttgtgttccagGCTGGCTGTTCAAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTTAATGTACTGTGTGCAGTTTTATCATGCCAGCGTCAGCAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCT------CTTGCTGGATGCCTCTGCCTAGTAGCCCGTCCGTGCCCAACGACCAGCATCTACTTAGATGCAAAGgtgagtgtgtaatatagatgtggcattgttggatttgtggacagaattct Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggttggctatagctgctgcaaggtgtcccctgacctcatttgtgttccagGCTGGCTGTTCAAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTTAATGTACTGTGTGCAGTTTTATCATGCCAGCGTCAGCAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTG------CTCTTGCTGGATGCCTCTGCCTAGTAGCCCGTCCGTGCCCAACGACCAGCATCTACTTAGATGCAAAGgtgagtgtgtaatatagatgtggcattgttggatttgtggacagaattct Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggttggctatagctgctgcaaggtgtcccctgacctcatttgtgttccagGCTGGCTGTTCAAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTTAATGTACTGTGTGCAGTTTTATCATGCCAGCGTCAGCAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCT------CTTGCTGGATGCCTCTGCCTAGTAGCCCGTCCGTGCCCAACGACCAGCATCTACTTAGATGCAAAGgtgagtgtgtaatatagatgtggcattgttggatttgtggacagaattct Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggttggctatagctgctgcaaggtgtcccctgacctcatttgtgttccagGCTGGCTGTTCAAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTTAATGTACTGTGTGCAGTTTTATCATGCCAGCGTCAGCAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCT------CTTGCTGGATGCCTCTGCCTAGTAGCCCGTCCGTGCCCAACGACCAGCATCTACTTAGATGCAAAGgtgagtgtgtaatatagatgtggcattgttggatttgtggacagaattct Alignment from Exonerate_coding2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggttggctatagctgctgcaaggtgtcccctgacctcatttgtgttccagGCTGGCTGTTCAAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTTAATGTACTGTGTGCAGTTTTATCATGCCAGCGTCAGCAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCT------CTTGCTGGATGCCTCTGCCTAGTAGCCCGTCCGTGCCCAACGACCAGCATCTACTTAGATGCAAAGgtgagtgtgtaatatagatgtggcattgttggatttgtggacagaattct Alignment from GeneWise ----GCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG ggttggctatagctgctgcaaggtgtcccctgacctcatttgtgttccagGCTGGCTGTTCAAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTGGTTAATGTACTGTGTGCAGTTTTATCATGCCAGCGTCAGCAACAACCCTGGATACTTTCACTGGAACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCTCTT------GCTGGATGCCTCTGCCTAGTAGCCCGTCCGTGCCCAACGACCAGCATCTACTTAGATGCAAAGgtgagtgtgtaatatagatgtggcattgttggatttgtggacagaattct #### Gucy2g_ID11571_20 --> 2 - 0 Original Alignment ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCAT-CTGCAAAAGAGA---GGCACCATT------TCAGTCAAG ggattgaaaatattgggttgatacaacgccttgctttacttcccgttcagctCTCCGTATTCATATTTCACACAGTACTTCTGGTGCTCTTCTGGCAGCAGGGGGGTACCCACCTGCAAG-GAGAGGCAGCACTGTTTCTGTATCTGTGAAAgtaagactgggcctgtttgtgctcagcattaaaaaaatctaaaccttgaa Alignment from CESAR ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACC---------ATTTCAGTCAAG ggattgaaaatattgggttgatacaacgccttgctttacttcccgttcagctCTCCGTATTCATATTTCACACAGTACTTCTGGTGCTCTTCTGGCAGCAGGGGGGTACCCACCTGCAAGGAGAGGCAGCACTGTTTCTGTATCTGTGAAAgtaagactgggcctgtttgtgctcagcattaaaaaaatctaaaccttgaa Alignment from Spaln_aa2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---------ACCATTTCAGTCAAG ggattgaaaatattgggttgatacaacgccttgctttacttcccgttcagCTCTCCGTATTCATATTTCACACAGTACTTCTGGTGCTCTTCTGGCAGCAGGGGGGTACCCACCTGCAAGGAGAGGCAGCACTGTTTCTGTATCTGTGAAAgtaagactgggcctgtttgtgctcagcattaaaaaaatctaaaccttgaa Alignment from Spaln_nt2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACCATT---------TCAGTCAAG ggattgaaaatattgggttgatacaacgccttgctttacttcccgttcagCTCTCCGTATTCATATTTCACACAGTACTTCTGGTGCTCTTCTGGCAGCAGGGGGGTACCCACCTGCAAGGAGAGGCAGCACTGTTTCTGTATCTGTGAAAgtaagactgggcctgtttgtgctcagcattaaaaaaatctaaaccttgaa Alignment from Pairagon CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACC-------------------------------ATCTGCAAAA ggattgaaaatattgggttgatacaacgccttgctttacttcccgttcagCTCTCCGTATTCATATTTCACACAGTACTTCTGGTGCTCTTCTGGCAGCAGGGGGGTACCCACCTGCAAGGAGAGGCAGCACTGTTTCTGTATCTGTGAAAgtaagactgggcctgtttgtgctcagcattaaaaaaatctaaaccttgaa Alignment from Exonerate_protein2genome ggattgaaaatattgggttgatacaacgccttgctttacttcccgttcagctctccgtattcatatttcacacagtacttctggtgctcttctggcagcaggggggtacccacctgcaaggagaggcagcactgtttctgtatctgtgaaagtaagactgggcctgtttgtgctcagcattaaaaaaatctaaaccttgaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG ggattgaaaatattgggttgatacaacgccttgctttacttcccgttcagCTCTCCGTATTCATATTTCACACAGTACTTCTGGTGCTCTTCTGGCAGCAGGGGGGTACCCACCTGCAAGGAGAGGCAGCACTGTTTCTGTATCTgtgaaagtaagactgggcctgtttgtgctcagcattaaaaaaatctaaaccttgaa #### Hectd2_ID7162_18 --> 2 - 0 Original Alignment agTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTAT-AAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttctgctgtgtgtttgtctcttcagagTACATTCAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATCAAGCAATTTG-TGCATTCTACTGTGGCTTTCAGAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaatgggtccaataattgataactaatccca Alignment from CESAR agTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttctgctgtgtgtttgtctcttcagagTACATTCAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATCAAGCAATTTGTGCATTCTACTGTGGCTTTCAGAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaatgggtccaataattgataactaatccca Alignment from Spaln_aa2Genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttctgctgtgtgtttgtctcttcagAGTACATTCAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATCAAGCAATTTGTGCATTCTACTGTGGCTTTCAGAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaatgggtccaataattgataactaatccca Alignment from Spaln_nt2Genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttctgctgtgtgtttgtctcttcagAGTACATTCAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATCAAGCAATTTGTGCATTCTACTGTGGCTTTCAGAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaatgggtccaataattgataactaatccca Alignment from Pairagon AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTAT-AAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttctgctgtgtgtttgtctcttcagAGTACATTCAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATCAAGCAATTTG-TGCATTCTACTGTGGCTTTCAGAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaatgggtccaataattgataactaatccca Alignment from Exonerate_protein2genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttctgctgtgtgtttgtctcttcagAGTACATTCAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATCAAGCAATTTGTGCATTCTACTGTGGCTTTCAGAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaatgggtccaataattgataactaatccca Alignment from Exonerate_coding2genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttctgctgtgtgtttgtctcttcagAGTACATTCAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATCAAGCAATTTGTGCATTCTACTGTGGCTTTCAGAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaatgggtccaataattgataactaatccca Alignment from GeneWise AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttctgctgtgtgtttgtctcttcagAGTACATTCAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATCAAGCAATTTGTGCATTCTACTGTGGCTTTCAGAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaatgggtccaataattgataactaatccca #### Hells_ID7707_14 --> 1 - 0 Original Alignment gACTGTTGTGGAAGGTAATATC-CCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagaACAGCTGTGCAAGGTAATATTCCCTATAGAAT-AGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from CESAR gACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG gagtcagataagaacctataaactaggactttcgttcttttgtttttcagaACAGCTGTGCAAGGTAATATTCCCTATAGAATAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Spaln_aa2Genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCCTATAGAATAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Spaln_nt2Genome GACTGTTGTGGAAGGTAATAT-CCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCCTATAGAAT-AGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Pairagon GACTGTTGTGGAAGGTAATA-TCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCCTATAGAATA-GAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Exonerate_protein2genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCCTATAGAATAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Exonerate_coding2genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCCTATAGAATAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from GeneWise GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCCTATAGAATAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGA-AATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTCAATGTGG-TGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATtggtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTCAATGTGGTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATtggtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTCAATGTGGTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTCAATGTGGTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCG-AAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTCAATGTGG-TGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTCAATGTGGTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTCAATGTGGTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTCAATGTGGTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGG-GCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagttaacctaataatgctcataatctgtgcctgcctttgtgttcagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGCGCACTAAAAT-CGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaagaaatttatcaggttttatgagcagaattggtaaaagtcataatct Alignment from CESAR GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagttaacctaataatgctcataatctgtgcctgcctttgtgttcagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGCGCACTAAAATCGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaagaaatttatcaggttttatgagcagaattggtaaaagtcataatct Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagttaacctaataatgctcataatctgtgcctgcctttgtgttcagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGCGCACTAAAATCGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaagaaatttatcaggttttatgagcagaattggtaaaagtcataatct Alignment from Spaln_nt2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagttaacctaataatgctcataatctgtgcctgcctttgtgttcagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGCGCACTAAAATCGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaagaaatttatcaggttttatgagcagaattggtaaaagtcataatct Alignment from Pairagon GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGG-GCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagttaacctaataatgctcataatctgtgcctgcctttgtgttcagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGCGCACTAAAAT-CGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaagaaatttatcaggttttatgagcagaattggtaaaagtcataatct Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagttaacctaataatgctcataatctgtgcctgcctttgtgttcagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGCGCACTAAAATCGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaagaaatttatcaggttttatgagcagaattggtaaaagtcataatct Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagttaacctaataatgctcataatctgtgcctgcctttgtgttcagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGCGCACTAAAATCGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaagaaatttatcaggttttatgagcagaattggtaaaagtcataatct Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagttaacctaataatgctcataatctgtgcctgcctttgtgttcagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGCGCACTAAAATCGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaagaaatttatcaggttttatgagcagaattggtaaaagtcataatct #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCC-TACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgggtttgtaacaatttcatttcatgtttttcagtgGGCGGACAGCACCGAGGCTATGACAACCAGGCCCTATGGGC-GCAGTACTGGGGGGAGCCTGGAACCAGAGGAgtaagtgcacatcctacataactcatccttccacctgttcctctaactgt Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgggtttgtaacaatttcatttcatgtttttcagtgGGCGGACAGCACCGAGGCTATGACAACCAGGCCCTATGGGCGCAGTACTGGGGGGAGCCTGGAACCAGAGGAgtaagtgcacatcctacataactcatccttccacctgttcctctaactgt Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgggtttgtaacaatttcatttcatgtttttcagTGGGCGGACAGCACCGAGGCTATGACAACCAGGCCCTATGGGCGCAGTACTGGGGGGAGCCTGGAACCAGAGGAgtaagtgcacatcctacataactcatccttccacctgttcctctaactgt Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgggtttgtaacaatttcatttcatgtttttcagTGGGCGGACAGCACCGAGGCTATGACAACCAGGCCCTATGGGCGCAGTACTGGGGGGAGCCTGGAACCAGAGGAgtaagtgcacatcctacataactcatccttccacctgttcctctaactgt Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGG-CCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgggtttgtaacaatttcatttcatgtttttcagTGGGCGGACAGCACCGAGGCTATGACAACCAGGCCCTATGGGC-GCAGTACTGGGGGGAGCCTGGAACCAGAGGAgtaagtgcacatcctacataactcatccttccacctgttcctctaactgt Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgggtttgtaacaatttcatttcatgtttttcagTGGGCGGACAGCACCGAGGCTATGACAACCAGGCCCTATGGGCGCAGTACTGGGGGGAGCCTGGAACCAGAGGAgtaagtgcacatcctacataactcatccttccacctgttcctctaactgt Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgggtttgtaacaatttcatttcatgtttttcagTGGGCGGACAGCACCGAGGCTATGACAACCAGGCCCTATGGGCGCAGTACTGGGGGGAGCCTGGAACCAGAGGAgtaagtgcacatcctacataactcatccttccacctgttcctctaactgt Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgggtttgtaacaatttcatttcatgtttttcagTGGGCGGACAGCACCGAGGCTATGACAACCAGGCCCTATGGGCGCAGTACTGGGGGGAGCCTGGAACCAGAGGAgtaagtgcacatcctacataactcatccttccacctgttcctctaactgt #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGAT-GTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtagattaacatatcaagtggtggctgtcccctgatttctcctgagcagctATGCAAGCTACAGTAGATATGACTGTCAGCATGGCTCAAGTTGGTGTTGATCGTCGCCATGG-GGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATCCACCACTACACTAAGgtgagcaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGAT-GTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtagattaacatatcaagtggtggctgtcccctgatttctcctgagcagctATGCAAGCTACAGTAGATATGACTGTCAGCATGGCTCAAGTTGGTGTTGATCGTCGCCATG-GGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATCCACCACTACACTAAGgtgagcaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtagattaacatatcaagtggtggctgtcccctgatttctcctgagcagCTATGCAAGCTACAGTAGATATGACTGTCAGCATGGCTCAAGTTGGTGTTGATCGTCGCCATGGGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATCCACCACTACACTAAGgtgagcaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGAT-GTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtagattaacatatcaagtggtggctgtcccctgatttctcctgagcagCTATGCAAGCTACAGTAGATATGACTGTCAGCATGGCTCAAGTTGGTGTTGATCGTCGCCATGG-GGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATCCACCACTACACTAAGgtgagcaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGAT-GTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtagattaacatatcaagtggtggctgtcccctgatttctcctgagcagCTATGCAAGCTACAGTAGATATGACTGTCAGCATGGCTCAAGTTGGTGTTGATCGTCGCCATGG-GGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATCCACCACTACACTAAGgtgagcaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtagattaacatatcaagtggtggctgtcccctgatttctcctgagcagCTATGCAAGCTACAGTAGATATGACTGTCAGCATGGCTCAAGTTGGTGTTGATCGTCGCCATGGGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATCCACCACTACACTAAGgtgagcaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from Exonerate_coding2genome TCCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtagattaacatatcaagtggtggctgtcccctgatttctcctgagcaGCTATGCAAGCTACAGTAGATATGACTGTCAGCATGGCTCAAGTTGGTGTTGATCGTCGCCATGGGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATCCACCACTACACTAAGgtgagcaggaatggttgagatatgctttaagtattgattgaaggaagcta Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG agtagattaacatatcaagtggtggctgtcccctgatttctcctgagcagCTATGCAAGCTACAGTAGATATGACTGTCAGCATGGCTCAAGTTGGTGTTGATCGTCGCCATGGGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATCCACCACTACACTAAGgtgagcaggaatggttgagatatgctttaagtattgattgaaggaagcta #### Hoga1_ID8381_4 --> 0 - 0 Original Alignment GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCC-GTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT taaacaggggttgacatggtaaatgcctcctcctctgactttgcttccagATTGCTGATGTTCCCCCAATCCCCGTAGTGTTATACAGTGTCCCAGCCAATACAGGACTAGAGCTACCTGTGGATGCTCGTGGTCACAT-GTCTCAACACCCAAACATTATTGGCCTGAAGGTCAGTGGTGGAGGTgtactgtgctatagggtccgatttgctcaagcaacctcaacctcaggtca Alignment from CESAR GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT taaacaggggttgacatggtaaatgcctcctcctctgactttgcttccagATTGCTGATGTTCCCCCAATCCCCGTAGTGTTATACAGTGTCCCAGCCAATACAGGACTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAACATTATTGGCCTGAAGGTCAGTGGTGGAGGTgtactgtgctatagggtccgatttgctcaagcaacctcaacctcaggtca Alignment from Spaln_aa2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT taaacaggggttgacatggtaaatgcctcctcctctgactttgcttccagATTGCTGATGTTCCCCCAATCCCCGTAGTGTTATACAGTGTCCCAGCCAATACAGGACTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAACATTATTGGCCTGAAGGTCAGTGGTGGAGGTgtactgtgctatagggtccgatttgctcaagcaacctcaacctcaggtca Alignment from Spaln_nt2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT taaacaggggttgacatggtaaatgcctcctcctctgactttgcttccagATTGCTGATGTTCCCCCAATCCCCGTAGTGTTATACAGTGTCCCAGCCAATACAGGACTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAACATTATTGGCCTGAAGGTCAGTGGTGGAGGTgtactgtgctatagggtccgatttgctcaagcaacctcaacctcaggtca Alignment from Pairagon GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGC-CGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT taaacaggggttgacatggtaaatgcctcctcctctgactttgcttccagATTGCTGATGTTCCCCCAATCCCCGTAGTGTTATACAGTGTCCCAGCCAATACAGGACTAGAGCTACCTGTGGATGCTCGTGGTCACA-TGTCTCAACACCCAAACATTATTGGCCTGAAGGTCAGTGGTGGAGGTgtactgtgctatagggtccgatttgctcaagcaacctcaacctcaggtca Alignment from Exonerate_protein2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT taaacaggggttgacatggtaaatgcctcctcctctgactttgcttccagATTGCTGATGTTCCCCCAATCCCCGTAGTGTTATACAGTGTCCCAGCCAATACAGGACTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAACATTATTGGCCTGAAGGTCAGTGGTGGAGGTgtactgtgctatagggtccgatttgctcaagcaacctcaacctcaggtca Alignment from Exonerate_coding2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT taaacaggggttgacatggtaaatgcctcctcctctgactttgcttccagATTGCTGATGTTCCCCCAATCCCCGTAGTGTTATACAGTGTCCCAGCCAATACAGGACTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAACATTATTGGCCTGAAGGTCAGTGGTGGAGGTgtactgtgctatagggtccgatttgctcaagcaacctcaacctcaggtca Alignment from GeneWise GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT taaacaggggttgacatggtaaatgcctcctcctctgactttgcttccagATTGCTGATGTTCCCCCAATCCCCGTAGTGTTATACAGTGTCCCAGCCAATACAGGACTAGAGCTACCTGTGGATGCTCGTGGTCACATGTCTCAACACCCAAACATTATTGGCCTGAAGGTCAGTGGTGGAGGTgtactgtgctatagggtccgatttgctcaagcaacctcaacctcaggtca #### Hoga1_ID8382_5 --> 0 - 1 Original Alignment GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTC-CTCCTGGCCAGCTATGCTGTGg cagacagatgtactggggagacaatcatttaactttgatttgctttctagGTGACCAAGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTTCTGGCGGGGTCTGTTGGCTCCCCTCCTAG-TAGCTATTCTGTAggtaccgttgccatcagttctaaaccaccatccacaatggcgccctgtcac Alignment from CESAR GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg cagacagatgtactggggagacaatcatttaactttgatttgctttctagGTGACCAAGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTTCTGGCGGGGTCTGTTGGCTCCCCTCCTAGTAGCTATTCTGTAggtaccgttgccatcagttctaaaccaccatccacaatggcgccctgtcac Alignment from Spaln_aa2Genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG cagacagatgtactggggagacaatcatttaactttgatttgctttctagGTGACCAAGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTTCTGGCGGGGTCTGTTGGCTCCCCTCCTAGTAGCTATTCTGTAGgtaccgttgccatcagttctaaaccaccatccacaatggcgccctgtcac Alignment from Spaln_nt2Genome GTGACCAGGATTGGACTGATAGT---TCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCC-TCCTGGCCAGCTATGCTGTGG cagacagatgtactggggagacaatcatttaactttgatttgctttctagGTGACCAAGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTTCTGGCGGGGTCTGTTGGCTCCCCTCCTAG-TAGCTATTCTGTAGgtaccgttgccatcagttctaaaccaccatccacaatggcgccctgtcac Alignment from Pairagon GTGACCAGGATTGGACTGATAGT---TCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG cagacagatgtactggggagacaatcatttaactttgatttgctttctagGTGACCAAGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTTCTGGCGGGGTCTGTTGGCTCCCCTCCTAGTAGCTATTCTGTAGgtaccgttgccatcagttctaaaccaccatccacaatggcgccctgtcac Alignment from Exonerate_protein2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG cagacagatgtactggggagacaatcatttaactttgatttgctttctagGTGACCAAGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTTCTGGCGGGGTCTGTTGGCTCCCCTCCTAGTAGCTATTCTGTAGgtaccgttgccatcagttctaaaccaccatccacaatggcgccctgtcac Alignment from Exonerate_coding2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGGGAGCTGTT cagacagatgtactggggagacaatcatttaactttgatttgctttctagGTGACCAAGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTTCTGGCGGGGTCTGTTGGCTCCCCTCCTAGTAGCTATTCTGTAGGTACCGTTgccatcagttctaaaccaccatccacaatggcgccctgtcac Alignment from GeneWise GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG cagacagatgtactggggagacaatcatttaactttgatttgctttctagGTGACCAAGATTGGACTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTTCTGGCGGGGTCTGTTGGCTCCCCTCCTAGTAGCTATTCTGTAGgtaccgttgccatcagttctaaaccaccatccacaatggcgccctgtcac #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAG-GAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cttggctcccactccacttggctcccccgatctctcttggggactttgagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGGTTTTCCCTTCTGGAGAAATGGTTGAAGGAGGGCCAGCGAAGCTGGTA-TGCTTTACGTTCCCAGCCCCTTGTGACTGACCCGCACCAGAAC---AACAAGTTCATCAGAAATCGGGTCAGGCAGGAAGTCCAGgtaaccccatggactgattttgggaccctctacagccttgctatctatat Alignment from CESAR AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cttggctcccactccacttggctcccccgatctctcttggggactttgagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGGTTTTCCCTTCTGGAGAAATGGTTGAAGGAGGGCCAGCGAAGCTGGTATGCTTTACGTTCCCAGCCCCTTGTGACTGACCCGCACCAGAAC---AACAAGTTCATCAGAAATCGGGTCAGGCAGGAAGTCCAGgtaaccccatggactgattttgggaccctctacagccttgctatctatat Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cttggctcccactccacttggctcccccgatctctcttggggactttgagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGGTTTTCCCTTCTGGAGAAATGGTTGAAGGAGGGCCAGCGAAGCTGGTATGCTTTACGTTCCCAGCCCCTTGTGACTGACCCGCACCAGAAC---AACAAGTTCATCAGAAATCGGGTCAGGCAGGAAGTCCAGgtaaccccatggactgattttgggaccctctacagccttgctatctatat Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAG-GAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cttggctcccactccacttggctcccccgatctctcttggggactttgagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGGTTTTCCCTTCTGGAGAAATGGTTGAAGGAGGGCCAGCGAAGCTGGTA-TGCTTTACGTTCCCAGCCCCTTGTGACTGACCCGCACCAGAACA---ACAAGTTCATCAGAAATCGGGTCAGGCAGGAAGTCCAGgtaaccccatggactgattttgggaccctctacagccttgctatctatat Alignment from Pairagon AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGA------------------TCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cttggctcccactccacttggctcccccgatctctcttggggactttgagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGGTTTTCCCTTCTGGAGAAATGGTTGAAGGAGGGCCA------------------GCGAAGCTGGTATGCTTTACGTTCCCAGCCCCTTGTGACTGACCCGCACCAGAACA---ACAAGTTCATCAGAAATCGGGTCAGGCAGGAAGTCCAGgtaaccccatggactgattttgggaccctctacagccttgctatctatat Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cttggctcccactccacttggctcccccgatctctcttggggactttgagAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGGTTTTCCCTTCTGGAGAAATGGTTGAAGGAGGGCCAGCGAAGCTGGTATGCTTTACGTTCCCAGCCCCTTGTGACTGACCCGCACCAGAAC---AACAAGTTCATCAGAAATCGGGTCAGGCAGGAAGTCCAGgtaaccccatggactgattttgggaccctctacagccttgctatctatat Alignment from Exonerate_coding2genome cttggctcccactccacttggctcccccgatctctcttggggactttgagagccctggtgccccactaacccaaatcctatgccaactgctggatgggttttcccttctggagaaatggttgaaggagggccagcgaagctggtatgctttacgttcccagccccttgtgactgacccgcaccagaacaacaagttcatcagaaatcgggtcaggcaggaagtccaggtaaccccatggactgattttgggaccctctacagccttgctatctatat Alignment from GeneWise --------------------------------------------------AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAGAACACC---TGGCTGGAGTTTAAG---------AGCAAAGCCTTCTCTAG CTTGGCTCCCACTCCACTTGGCTCCCCCGATCTCTCTTGGGGACTTTGAGAGCCCTGGTGCCCCACTAACCCAAATCCTATGCCAACTGCTGGATGGGTTTTCCCTTCTGGAGAAATGGTTGAAGGAGGGCCAGCGAAGCTGGTATGCTTTACGTTCCCAGCCCCTTGTGACTGACCCGCACCAGAAC---AACAAGTTCATCAGAAATCGGGTCAGGCAGGAAGTCCAGGTAACCCCATGGACTGATTTTGGGACCCTCTACAGCCTTGCTATCTATAT #### Hps1_ID8620_8 --> 0 - 1 Original Alignment GACACAGACAGCATCTCCCTCCCTGAAGAG-TACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg tggtaagcaaactacggtgtattctctgcacatgcagtgtccttccttagGATACTGAT---AATTCC---CCGGAAGAGCTATTTCA-TCCCTCTCCTCCCCCAAGT------GGTCCAggtgagaggagtgggtgtggcaccttactatgtcacttagttaagtacaga Alignment from CESAR GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg tggtaagcaaactacggtgtattctctgcacatgcagtgtccttccttagGATACTGATAAT---TCC---CCGGAAGAGCTATTTCATCCCTCTCCTCCCCCAAGT------GGTCCAggtgagaggagtgggtgtggcaccttactatgtcacttagttaagtacaga Alignment from Spaln_aa2Genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTA tggtaagcaaactacggtgtattctctgcacatgcagtgtccttccttagGATACTGATAATTCC------CCGGAAGAGCTATTTCATCCCTCTCCTCCCCCAAGTGGTCCAGGTGAGAGGAgtgggtgtggcaccttactatgtcacttagttaagtacaga Alignment from Spaln_nt2Genome GACACAGACAGCATCTCCCTCCCTGAAGAG-TACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG tggtaagcaaactacggtgtattctctgcacatgcagtgtccttccttagGATACTGATA--AT-TC---CCCGGAAGAGCTATTTCA-TCCCTCTCCTCCCCCAAGTG------GTCCAGgtgagaggagtgggtgtggcaccttactatgtcacttagttaagtacaga Alignment from Pairagon tggtaagcaaactacggtgtattctctgcacatgcagtgtccttccttaggatactgataattccccggaagagctatttcatccctctcctcccccaagtggtccaggtgagaggagtgggtgtggcaccttactatgtcacttagttaagtacaga Alignment from Exonerate_protein2genome TC TGgtaagcaaactacggtgtattctctgcacatgcagtgtccttccttaggatactgataattccccggaagagctatttcatccctctcctcccccaagtggtccaggtgagaggagtgggtgtggcaccttactatgtcacttagttaagtacaga Alignment from Exonerate_coding2genome tggtaagcaaactacggtgtattctctgcacatgcagtgtccttccttaggatactgataattccccggaagagctatttcatccctctcctcccccaagtggtccaggtgagaggagtgggtgtggcaccttactatgtcacttagttaagtacaga Alignment from GeneWise GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCT---------TCCCCAGGCGATCAGAGTTCAG tggtaagcaaactacggtgtattctctgcacatgcagtgtccttccttagGATACTGATAATTCC------CCGGAAGAGCTATTTCATCCCTCTCCTCCCCCAAGTGGTCCAGGTGAGAGGAGTGGGTgtggcaccttactatgtcacttagttaagtacaga #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTG-CGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC---CCTCAG ccaccctaacaacccaagctcctattctgttctttctttttctttttcagcCAAGGTGCAAGCACTCTACTGTCCAGAAG-TTTTCTT---------CTCCTAGTTCATGACCCACAGCCTTCACCAGCCATGACAGAGGAAGAGGGGGAGCAAGAAGATGGTCCCAGCAGTCCACAGgtaaatgcaaagcccagaattgtgattgactacctatcagaaggagctgg Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG ccaccctaacaacccaagctcctattctgttctttctttttctttttcagcCAAGGTGCAAGCACTCTACTGTCCAGAAGTTTTCTT---------CTCCTAGTTCATGACCCACAGCCTTCACCAGCCATGACAGAGGAAGAGGGGGAGCAAGAAGATGGTCCCAGCAGTCCACAGgtaaatgcaaagcccagaattgtgattgactacctatcagaaggagctgg Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGAT---AGCGACAGCCCTCAGAGGAGACCCAAGAGCAGCCAA ccaccctaacaacccaagctcctattctgttctttctttttctttttcagCCAAGGTGCAAGCACTCTACTGTCCAGAAGTTTTCTT---------CTCCTAGTTCATGACCCACAGCCTTCACCAGCCATGACAGAGGAAGAGGGGGAGCAAGAAGATGGTCCCAGCAGTCCACAGGTAAATGCAAAGCCCAGAATTgtgattgactacctatcagaaggagctgg Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGC-GCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC---CCTCAG ccaccctaacaacccaagctcctattctgttctttctttttctttttcagCCAAGGTGCAAGCACTCTACTGTCCAGAAGTTTTC----------TTCTCCTAGTTCATGACCCACAGCCTTCACCAGCCATGACAGAGGAAGAGGGGGAGCAAGAAGATGGTCCCAGCAGTCCACAGgtaaatgcaaagcccagaattgtgattgactacctatcagaaggagctgg Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATC--------------------CTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGA ccaccctaacaacccaagctcctattctgttctttctttttctttttcagCCAAGGTGCAAGCAC-----------------------------TCTACTGTCCAGAAGTTTTCTTCTCCTAGTTCATGACCCACAGCCTTCACCAGCCATGACAGAGGAAGAGGGGGAgcaagaagatggtcccagcagtccacaggtaaatgcaaagcccagaattgtgattgactacctatcagaaggagctgg Alignment from Exonerate_protein2genome ccaccctaacaacccaagctcctattctgttctttctttttctttttcagccaaggtgcaagcactctactgtccagaagttttcttctcctagttcatgacccacagccttcaccagccatgacagaggaagagggggagcaagaagatggtcccagcagtccacaggtaaatgcaaagcccagaattgtgattgactacctatcagaaggagctgg Alignment from Exonerate_coding2genome ccaccctaacaacccaagctcctattctgttctttctttttctttttcagccaaggtgcaagcactctactgtccagaagttttcttctcctagttcatgacccacagccttcaccagccatgacagaggaagagggggagcaagaagatggtcccagcagtccacaggtaaatgcaaagcccagaattgtgattgactacctatcagaaggagctgg Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAGAGGAGACCCAAGAGCAGCCAA ccaccctaacaacccaagctcctattctgttctttctttttctttttcagCCAAGGTGCAAGCACTCTACTGTCCAGAAGTTTTCTT---------CTCCTAGTTCATGACCCACAGCCTTCACCAGCCATGACAGAGGAAGAGGGGGAGCAAGAAGATGGTCCCAGCAGTCCACAGGTAAATGCAAAGCCCAGAATTgtgattgactacctatcagaaggagctgg #### Il33_ID6361_4 --> 2 - 1 Original Alignment gaACTTCACTTTTAACACAGTCTCCTGCC-TCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAg ctagttgggctgatagacacataatatgtcactcactgccaggcctacaggaACTGCGCTTTTAACTCAAACACCAGCTCTCCCTAA-TGCATACAACGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATggtaatgcttaaccatgccacaagtccttggggtaatgcttaatgagaacg Alignment from CESAR gaACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAg ctagttgggctgatagacacataatatgtcactcactgccaggcctacaggaACTGCGCTTTTAACTCAAACACCAGCTCTCCCTAATGCATACAACGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATggtaatgcttaaccatgccacaagtccttggggtaatgcttaatgagaacg Alignment from Spaln_aa2Genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctagttgggctgatagacacataatatgtcactcactgccaggcctacagGAACTGCGCTTTTAACTCAAACACCAGCTCTCCCTAATGCATACAACGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtaatgcttaaccatgccacaagtccttggggtaatgcttaatgagaacg Alignment from Spaln_nt2Genome GAACTTCACTTTTAACACAGTCTCCTGC-CTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctagttgggctgatagacacataatatgtcactcactgccaggcctacagGAACTGCGCTTTTAACTCAAACACCAGCTCTCCCT-AATGCATACAACGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtaatgcttaaccatgccacaagtccttggggtaatgcttaatgagaacg Alignment from Pairagon GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctagttgggctgatagacacataatatgtcactcactgccaggcctacagGAACTGCGCTTTTAACTCAAACACCAGCTCTCCCTAATGCATACAACGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtaatgcttaaccatgccacaagtccttggggtaatgcttaatgagaacg Alignment from Exonerate_protein2genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctagttgggctgatagacacataatatgtcactcactgccaggcctacagGAACTGCGCTTTTAACTCAAACACCAGCTCTCCCTAATGCATACAACGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtaatgcttaaccatgccacaagtccttggggtaatgcttaatgagaacg Alignment from Exonerate_coding2genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctagttgggctgatagacacataatatgtcactcactgccaggcctacagGAACTGCGCTTTTAACTCAAACACCAGCTCTCCCTAATGCATACAACGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtaatgcttaaccatgccacaagtccttggggtaatgcttaatgagaacg Alignment from GeneWise GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctagttgggctgatagacacataatatgtcactcactgccaggcctacagGAACTGCGCTTTTAACTCAAACACCAGCTCTCCCTAATGCATACAACGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtaatgcttaaccatgccacaagtccttggggtaatgcttaatgagaacg #### Il33_ID6363_6 --> 2 - 0 Original Alignment gcGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGAC-ATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG cccctaaataaacacctagctcacatttcaaatccttcttcatttgacagggGATGGTGTGGATGGGAAGAAGCTAATGGTGAAGATGAGTCCAATTAAAGACACAGACCATCTGGCTGC-CGCCAATGACAAGGACTACCCAGTGGAGgtaaggggaagatactctaataaccctgatggatccttttcttcatataa Alignment from CESAR gcGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG cccctaaataaacacctagctcacatttcaaatccttcttcatttgacagggGATGGTGTGGATGGGAAGAAGCTAATGGTGAAGATGAGTCCAATTAAAGACACAGACCATCTGGCTGCCGCCAATGACAAGGACTACCCAGTGGAGgtaaggggaagatactctaataaccctgatggatccttttcttcatataa Alignment from Spaln_aa2Genome GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG cccctaaataaacacctagctcacatttcaaatccttcttcatttgacagGGGATGGTGTGGATGGGAAGAAGCTAATGGTGAAGATGAGTCCAATTAAAGACACAGACCATCTGGCTGCCGCCAATGACAAGGACTACCCAGTGGAGgtaaggggaagatactctaataaccctgatggatccttttcttcatataa Alignment from Spaln_nt2Genome GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGAC-ATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG cccctaaataaacacctagctcacatttcaaatccttcttcatttgacagGGGATGGTGTGGATGGGAAGAAGCTAATGGTGAAGATGAGTCCAATTAAAGACACAGACCATCTGGCTGC-CGCCAATGACAAGGACTACCCAGTGGAGgtaaggggaagatactctaataaccctgatggatccttttcttcatataa Alignment from Pairagon GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGA-CATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG cccctaaataaacacctagctcacatttcaaatccttcttcatttgacagGGGATGGTGTGGATGGGAAGAAGCTAATGGTGAAGATGAGTCCAATTAAAGACACAGACCATCTGGCTGC-CGCCAATGACAAGGACTACCCAGTGGAGgtaaggggaagatactctaataaccctgatggatccttttcttcatataa Alignment from Exonerate_protein2genome GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG cccctaaataaacacctagctcacatttcaaatccttcttcatttgacagGGGATGGTGTGGATGGGAAGAAGCTAATGGTGAAGATGAGTCCAATTAAAGACACAGACCATCTGGCTGCCGCCAATGACAAGGACTACCCAGTGGAGgtaaggggaagatactctaataaccctgatggatccttttcttcatataa Alignment from Exonerate_coding2genome GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG cccctaaataaacacctagctcacatttcaaatccttcttcatttgacagGGGATGGTGTGGATGGGAAGAAGCTAATGGTGAAGATGAGTCCAATTAAAGACACAGACCATCTGGCTGCCGCCAATGACAAGGACTACCCAGTGGAGgtaaggggaagatactctaataaccctgatggatccttttcttcatataa Alignment from GeneWise GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG cccctaaataaacacctagctcacatttcaaatccttcttcatttgacagGGGATGGTGTGGATGGGAAGAAGCTAATGGTGAAGATGAGTCCAATTAAAGACACAGACCATCTGGCTGCCGCCAATGACAAGGACTACCCAGTGGAGgtaaggggaagatactctaataaccctgatggatccttttcttcatataa #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTG-CGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tttattggtaactagcagactactacttctgacatcaccacttgctgtaggGAGATGCAAGAGAGAGAAAAGGCCTTGCAGACTCC-GAAAGAACGGCTCCAAAAGGAACTTGGGGAAAAGAAGCAGAAGgtgagggcggccctgcagacatatattctgcagagtaaagtctgatctgg Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tttattggtaactagcagactactacttctgacatcaccacttgctgtaggGAGATGCAAGAGAGAGAAAAGGCCTTGCAGACTCCGAAAGAACGGCTCCAAAAGGAACTTGGGGAAAAGAAGCAGAAGgtgagggcggccctgcagacatatattctgcagagtaaagtctgatctgg Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tttattggtaactagcagactactacttctgacatcaccacttgctgtagGGAGATGCAAGAGAGAGAAAAGGCCTTGCAGACTCCGAAAGAACGGCTCCAAAAGGAACTTGGGGAAAAGAAGCAGAAGgtgagggcggccctgcagacatatattctgcagagtaaagtctgatctgg Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tttattggtaactagcagactactacttctgacatcaccacttgctgtagGGAGATGCAAGAGAGAGAAAAGGCCTTGCAGACTCCGAAAGAACGGCTCCAAAAGGAACTTGGGGAAAAGAAGCAGAAGgtgagggcggccctgcagacatatattctgcagagtaaagtctgatctgg Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGC-GACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tttattggtaactagcagactactacttctgacatcaccacttgctgtagGGAGATGCAAGAGAGAGAAAAGGCCTTGCAGACTCCGAAA-GAACGGCTCCAAAAGGAACTTGGGGAAAAGAAGCAGAAGgtgagggcggccctgcagacatatattctgcagagtaaagtctgatctgg Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tttattggtaactagcagactactacttctgacatcaccacttgctgtagGGAGATGCAAGAGAGAGAAAAGGCCTTGCAGACTCCGAAAGAACGGCTCCAAAAGGAACTTGGGGAAAAGAAGCAGAAGgtgagggcggccctgcagacatatattctgcagagtaaagtctgatctgg Alignment from Exonerate_coding2genome tttattggtaactagcagactactacttctgacatcaccacttgctgtagggagatgcaagagagagaaaaggccttgcagactccgaaagaacggctccaaaaggaacttggggaaaagaagcagaaggtgagggcggccctgcagacatatattctgcagagtaaagtctgatctgg Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tttattggtaactagcagactactacttctgacatcaccacttgctgtagGGAGATGCAAGAGAGAGAAAAGGCCTTGCAGACTCCGAAAGAACGGCTCCAAAAGGAACTTGGGGAAAAGAAGCAGAAGgtgagggcggccctgcagacatatattctgcagagtaaagtctgatctgg #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTACAAACAGGCAATA-AGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG atggcagtgatgacgagtaatattctagctcttttctgttttttttacagaAGGAAGCGTAGTTACAAAAAGGCTACACGGCAAGC-TGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCC------CCACCCAACAAAgtaagtgtctgctcatcttttatgcccttattctggattctatccaagca Alignment from CESAR gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG atggcagtgatgacgagtaatattctagctcttttctgttttttttacagaAGGAAGCGTAGTTACAAAAAGGCTACACGGCAAGCTGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCC------CCACCCAACAAAgtaagtgtctgctcatcttttatgcccttattctggattctatccaagca Alignment from Spaln_aa2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG atggcagtgatgacgagtaatattctagctcttttctgttttttttacagAAGGAAGCGTAGTTACAAAAAGGCTACACGGCAAGCTGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCC------CCACCCAACAAAgtaagtgtctgctcatcttttatgcccttattctggattctatccaagca Alignment from Spaln_nt2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG atggcagtgatgacgagtaatattctagctcttttctgttttttttacagAAGGAAGCGTAGTTACAAAAAGGCTACACGGCAAGCTGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTT---CAGCC---CCACCCAACAAAgtaagtgtctgctcatcttttatgcccttattctggattctatccaagca Alignment from Pairagon GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTT---CCCCACCCTGTCCAGCCAACAAG atggcagtgatgacgagtaatattctagctcttttctgttttttttacagAAGGAAGCGTAGTTACAAAAAGGCTACACGGCAAGCTGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCCCCAC---------CCAACAAAgtaagtgtctgctcatcttttatgcccttattctggattctatccaagca Alignment from Exonerate_protein2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG atggcagtgatgacgagtaatattctagctcttttctgttttttttacagAAGGAAGCGTAGTTACAAAAAGGCTACACGGCAAGCTGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCA------GCCCCACCCAACAAAgtaagtgtctgctcatcttttatgcccttattctggattctatccaagca Alignment from Exonerate_coding2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG atggcagtgatgacgagtaatattctagctcttttctgttttttttacagAAGGAAGCGTAGTTACAAAAAGGCTACACGGCAAGCTGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCA------GCCCCACCCAACAAAgtaagtgtctgctcatcttttatgcccttattctggattctatccaagca Alignment from GeneWise GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCC------------------TGT-------------------------------------- atggcagtgatgacgagtaatattctagctcttttctgttttttttacagAAGGAAGCGTAGTTACAAAAAGGCTACACGGCAAGCTGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCCCCACCCAACAAAGTAAGTGTCTGCTCATCTTTTATGCCCTTATTCTGGATTCTATCCAAGCA #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagacatgtggtgcacgctttctctcctagcCTGGAGCAGGAGTCAGTTGAGGTTACTGAGCCTCGAAGATACAG-AGAGGAGCAAGAGgtaccgctgggccaactcttactcccctcagcttatgaggcactctcgct Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagacatgtggtgcacgctttctctcctagcCTGGAGCAGGAGTCAGTTGAGGTTACTGAGCCTCGAAGATACAGAGAGGAGCAAGAGgtaccgctgggccaactcttactcccctcagcttatgaggcactctcgct Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagacatgtggtgcacgctttctctcctagCCTGGAGCAGGAGTCAGTTGAGGTTACTGAGCCTCGAAGATACAGAGAGGAGCAAGAGgtaccgctgggccaactcttactcccctcagcttatgaggcactctcgct Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagacatgtggtgcacgctttctctcctagCCTGGAGCAGGAGTCAGTTGAGGTTACTGAGCCTCGAAGATACAG-AGAGGAGCAAGAGgtaccgctgggccaactcttactcccctcagcttatgaggcactctcgct Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagacatgtggtgcacgctttctctcctagCCTGGAGCAGGAGTCAGTTGAGGTTACTGAGCCTCGAAGATACAG-AGAGGAGCAAGAGgtaccgctgggccaactcttactcccctcagcttatgaggcactctcgct Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagacatgtggtgcacgctttctctcctagCCTGGAGCAGGAGTCAGTTGAGGTTACTGAGCCTCGAAGATACAGAGAGGAGCAAGAGgtaccgctgggccaactcttactcccctcagcttatgaggcactctcgct Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagacatgtggtgcacgctttctctcctagCCTGGAGCAGGAGTCAGTTGAGGTTACTGAGCCTCGAAGATACAGAGAGGAGCAAGAGgtaccgctgggccaactcttactcccctcagcttatgaggcactctcgct Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagacatgtggtgcacgctttctctcctagCCTGGAGCAGGAGTCAGTTGAGGTTACTGAGCCTCGAAGATACAGAGAGGAGCAAGAGgtaccgctgggccaactcttactcccctcagcttatgaggcactctcgct #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGG-CCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg atagatccaaccttcccagatgtgtgcatctaaattggctggttttgcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTGCCTGCCCCTGGGTGGACAGAGTTAGCAAACCTTATAAAC---AGTATGGACTATGAACCAGATTTCAGACCCTGCTTTCA-AGCTCTTGTACGTGATCTTAACAGTCTTTTTACACCTggttggacaggttttttacctctgatggatttgatttgtctaacttgagaa Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg atagatccaaccttcccagatgtgtgcatctaaattggctggttttgcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTGCCTGCCCCTGGGTGGACAGAGTTAGCAAACCTTATAAACAGT---ATGGACTATGAACCAGATTTCAGACCCTGCTTTCAAGCTCTTGTACGTGATCTTAACAGTCTTTTTACACCTggttggacaggttttttacctctgatggatttgatttgtctaacttgagaa Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG atagatccaaccttcccagatgtgtgcatctaaattggctggttttgcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTGCCTGCCCCTGGGTGGACAGAGTTAGCAAACCTTATAAACAGT---ATGGACTATGAACCAGATTTCAGACCCTGCTTTCAAGCTCTTGTACGTGATCTTAACAGTCTTTTTACACCTGgttggacaggttttttacctctgatggatttgatttgtctaacttgagaa Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG atagatccaaccttcccagatgtgtgcatctaaattggctggttttgcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTGCCTGCCCCTGGGTGGACAGAGTTAGCAAACCTTATAAACA---GTATGGACTATGAACCAGATTTCAGACCCTGCTTTCAAGCTCTTGTACGTGATCTTAACAGTCTTTTTACACCTGgttggacaggttttttacctctgatggatttgatttgtctaacttgagaa Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGG-CCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG atagatccaaccttcccagatgtgtgcatctaaattggctggttttgcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTGCCTGCCCCTGGGTGGACAGAGTTAGCAAACCTTATAAACA---GTATGGACTATGAACCAGATTTCAGACCCTGCTTTCA-AGCTCTTGTACGTGATCTTAACAGTCTTTTTACACCTGgttggacaggttttttacctctgatggatttgatttgtctaacttgagaa Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG atagatccaaccttcccagatgtgtgcatctaaattggctggttttgcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTGCCTGCCCCTGGGTGGACAGAGTTAGCAAACCTTATAAACAGT---ATGGACTATGAACCAGATTTCAGACCCTGCTTTCAAGCTCTTGTACGTGATCTTAACAGTCTTTTTACACCTGgttggacaggttttttacctctgatggatttgatttgtctaacttgagaa Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG atagatccaaccttcccagatgtgtgcatctaaattggctggttttgcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTGCCTGCCCCTGGGTGGACAGAGTTAGCAAACCTTATAAACAGT---ATGGACTATGAACCAGATTTCAGACCCTGCTTTCAAGCTCTTGTACGTGATCTTAACAGTCTTTTTACACCTGgttggacaggttttttacctctgatggatttgatttgtctaacttgagaa Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG atagatccaaccttcccagatgtgtgcatctaaattggctggttttgcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTGCCTGCCCCTGGGTGGACAGAGTTAGCAAACCTTATAAACAGT---ATGGACTATGAACCAGATTTCAGACCCTGCTTTCAAGCTCTTGTACGTGATCTTAACAGTCTTTTTACACCTGgttggacaggttttttacctctgatggatttgatttgtctaacttgagaa #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTG-CAGTATCTCAACCTCATCAATTACTACAAG tgtgctatgatctcacaggtgtatactgagcatggctatgtctttctcagtGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGTTGCCAGTATC-CAACCTAATCAATTACTACAAGgtaaacgggcataatccaattgaagcaaaaacttgcttatacttaggtgt Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG tgtgctatgatctcacaggtgtatactgagcatggctatgtctttctcagtGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGTTGCCAGTATCCAACCTAATCAATTACTACAAGgtaaacgggcataatccaattgaagcaaaaacttgcttatacttaggtgt Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG tgtgctatgatctcacaggtgtatactgagcatggctatgtctttctcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGTTGCCAGTATCCAACCTAATCAATTACTACAAGgtaaacgggcataatccaattgaagcaaaaacttgcttatacttaggtgt Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGC-AGTATCTCAACCTCATCAATTACTACAAG tgtgctatgatctcacaggtgtatactgagcatggctatgtctttctcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGTTGCCAGTATC-CAACCTAATCAATTACTACAAGgtaaacgggcataatccaattgaagcaaaaacttgcttatacttaggtgt Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTG-CAGTATCTCAACCTCATCAATTACTACAAG tgtgctatgatctcacaggtgtatactgagcatggctatgtctttctcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGTTGCCAGTATC-CAACCTAATCAATTACTACAAGgtaaacgggcataatccaattgaagcaaaaacttgcttatacttaggtgt Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG tgtgctatgatctcacaggtgtatactgagcatggctatgtctttctcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGTTGCCAGTATCCAACCTAATCAATTACTACAAGgtaaacgggcataatccaattgaagcaaaaacttgcttatacttaggtgt Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG tgtgctatgatctcacaggtgtatactgagcatggctatgtctttctcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGTTGCCAGTATCCAACCTAATCAATTACTACAAGgtaaacgggcataatccaattgaagcaaaaacttgcttatacttaggtgt Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG tgtgctatgatctcacaggtgtatactgagcatggctatgtctttctcagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGTTGCCAGTATCCAACCTAATCAATTACTACAAGgtaaacgggcataatccaattgaagcaaaaacttgcttatacttaggtgt #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACT-CCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaaggcTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCCTG-GAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaaggcTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCCTGGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCCTGGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCCTGGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCCTGGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCCTGGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCCTGGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCCTGGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCC-TACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa agagagttgcgattacgtgccaacctgtctcacatcctctctctttacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCTACCCCCCCTACCAACGGC-GGGCTATGGTAGATTGCTTATTGAGTTCagtgagtgtatactatctgctcatgggctgagataaatagatcaggttgag Alignment from CESAR GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCC-TACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa agagagttgcgattacgtgccaacctgtctcacatcctctctctttacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCTACCCCCCCTACCAACGGC-GGGCTATGGTAGATTGCTTATTGAGTTCagtgagtgtatactatctgctcatgggctgagataaatagatcaggttgag Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcgattacgtgccaacctgtctcacatcctctctctttacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCTACCCCCCCTACCAACGGCGGGCTATGGTAGATTGCTTATTGAGTTCAgtgagtgtatactatctgctcatgggctgagataaatagatcaggttgag Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcgattacgtgccaacctgtctcacatcctctctctttacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCTACCCCCCCTACCAACGGCGGGCTATGGTAGATTGCTTATTGAGTTCAgtgagtgtatactatctgctcatgggctgagataaatagatcaggttgag Alignment from Pairagon GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTG-CCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcgattacgtgccaacctgtctcacatcctctctctttacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCTACCCCCCCTACCAACGGC-GGGCTATGGTAGATTGCTTATTGAGTTCAgtgagtgtatactatctgctcatgggctgagataaatagatcaggttgag Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcgattacgtgccaacctgtctcacatcctctctctttacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCTACCCCCCCTACCAACGGCGGGCTATGGTAGATTGCTTATTGAGTTCAgtgagtgtatactatctgctcatgggctgagataaatagatcaggttgag Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcgattacgtgccaacctgtctcacatcctctctctttacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCTACCCCCCCTACCAACGGCGGGCTATGGTAGATTGCTTATTGAGTTCAgtgagtgtatactatctgctcatgggctgagataaatagatcaggttgag Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA agagagttgcgattacgtgccaacctgtctcacatcctctctctttacagGAGAAAGAGTCCACAGAAGATTACAACATTGCTTGCATCTTAACCCTACCCCCCCTACCAACGGCGGGCTATGGTAGATTGCTTATTGAGTTCAgtgagtgtatactatctgctcatgggctgagataaatagatcaggttgag #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGG-AAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcacatggtatccctcaattccatgccttttctttttttttcccctccagCCGGCCTCAGCCCAGGCCAGCGGGCAAGA-ATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAATCgtgctttgcaaaaacggtcatcttcataccagctgttgtgtcttcgactt Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcacatggtatccctcaattccatgccttttctttttttttcccctccagCCGGCCTCAGCCCAGGCCAGCGGGCAAGAATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAATCgtgctttgcaaaaacggtcatcttcataccagctgttgtgtcttctatgg Alignment from Spaln_aa2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcacatggtatccctcaattccatgccttttctttttttttcccctccagCCGGCCTCAGCCCAGGCCAGCGGGCAAGAATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAATCgtgctttgcaaaaacggtcatcttcataccagctgttgtgtcttcgactt Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcacatggtatccctcaattccatgccttttctttttttttcccctccagCCGGCCTCAGCCCAGGCCAGCGGGCAAGAATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAATCgtgctttgcaaaaacggtcatcttcataccagctgttgtgtcttcgactt Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAAC--------------------------------------------------- tcacatggtatccctcaattccatgccttttctttttttttcccctccagCCGGCCTCAGCCCAGGCCAGCGGGCAAGAATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAATCGTGCTTTGCAAAAACGGTCATCTTCATACCAGCTGTTGTGTCTTCGACTT Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcacatggtatccctcaattccatgccttttctttttttttcccctccagCCGGCCTCAGCCCAGGCCAGCGGGCAAGAATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAATCgtgctttgcaaaaacggtcatcttcataccagctgttgtgtcttcgactt Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcacatggtatccctcaattccatgccttttctttttttttcccctccagCCGGCCTCAGCCCAGGCCAGCGGGCAAGAATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAATCgtgctttgcaaaaacggtcatcttcataccagctgttgtgtcttcgactt Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcacatggtatccctcaattccatgccttttctttttttttcccctccagCCGGCCTCAGCCCAGGCCAGCGGGCAAGAATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAATCgtgctttgcaaaaacggtcatcttcataccagctgttgtgtcttcgactt #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACC-CTCACAGTGCTCACACCAg ttgacaagattatccacaaggttaggggttctctgttgtgttttccacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGGAATGTTCTCAGCCAAGCAGAAGCCACAGCAACTCCTGA-AGTGCTTACACCAggtatgtattaattgtgggtagtagcatgtgtcaggcatcacattttaaga Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ttgacaagattatccacaaggttaggggttctctgttgtgttttccacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGGAATGTTCTCAGCCAAGCAGAAGCCACAGCAACTCCTGAAGTGCTTACACCAggtatgtattaattgtgggtagtagcatgtgtcaggcatcacattttaaga Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ttgacaagattatccacaaggttaggggttctctgttgtgttttccacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGGAATGTTCTCAGCCAAGCAGAAGCCACAGCAACTCCTGAAGTGCTTACACCAGgtatgtattaattgtgggtagtagcatgtgtcaggcatcacattttaaga Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ttgacaagattatccacaaggttaggggttctctgttgtgttttccacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGGAATGTTCTCAGCCAAGCAGAAGCCACAGCAACTCCTGAAGTGCTTACACCAGgtatgtattaattgtgggtagtagcatgtgtcaggcatcacattttaaga Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ttgacaagattatccacaaggttaggggttctctgttgtgttttccacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGGAATGTTCTCAGCCAAGCAGAAGCCACAGCAACTCCTGAAGTGCTTACACCAGgtatgtattaattgtgggtagtagcatgtgtcaggcatcacattttaaga Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ttgacaagattatccacaaggttaggggttctctgttgtgttttccacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGGAATGTTCTCAGCCAAGCAGAAGCCACAGCAACTCCTGAAGTGCTTACACCAGgtatgtattaattgtgggtagtagcatgtgtcaggcatcacattttaaga Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ttgacaagattatccacaaggttaggggttctctgttgtgttttccacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGGAATGTTCTCAGCCAAGCAGAAGCCACAGCAACTCCTGAAGTGCTTACACCAGgtatgtattaattgtgggtagtagcatgtgtcaggcatcacattttaaga Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ttgacaagattatccacaaggttaggggttctctgttgtgttttccacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGGAATGTTCTCAGCCAAGCAGAAGCCACAGCAACTCCTGAAGTGCTTACACCAGgtatgtattaattgtgggtagtagcatgtgtcaggcatcacattttaaga #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGAT-AGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atcgattattatgcagtgtcttaagtgcctggattcatatttatgttcagGATTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGA---TATT-GGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtgtgttgcaactccagatttcggtgacattagggccagttttgaatcgc Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atcgattattatgcagtgtcttaagtgcctggattcatatttatgttcagGATTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATA---TTGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtgtgttgcaactccagatttcggtgacattagggccagttttgaatcgc Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atcgattattatgcagtgtcttaagtgcctggattcatatttatgttcagGATTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATA---TTGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtgtgttgcaactccagatttcggtgacattagggccagttttgaatcgc Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atcgattattatgcagtgtcttaagtgcctggattcatatttatgttcagGATTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGA---CCAGATATTGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtgtgttgcaactccagatttcggtgacattagggccagttttgaatcgc Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atcgattattatgcagtgtcttaagtgcctggattcatatttatgttcagGATTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGAC---CAGATATTGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtgtgttgcaactccagatttcggtgacattagggccagttttgaatcgc Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atcgattattatgcagtgtcttaagtgcctggattcatatttatgttcagGATTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATA---TTGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtgtgttgcaactccagatttcggtgacattagggccagttttgaatcgc Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atcgattattatgcagtgtcttaagtgcctggattcatatttatgttcagGATTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATA---TTGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtgtgttgcaactccagatttcggtgacattagggccagttttgaatcgc Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atcgattattatgcagtgtcttaagtgcctggattcatatttatgttcagGATTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACCAGATA---TTGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtgtgttgcaactccagatttcggtgacattagggccagttttgaatcgc #### Kdm2a_ID517_4 --> 1 - 1 Original Alignment gATGCCGGATCCAGACTTC-ACAGTGAATGATGTCAAAATGTGTGTGg cttaaaagtcattcagtcaagtcaacactacctgtcgtttctcccggcaggATGCCAGATCCAGACTTCCACAGTGA-TGATGTTAAAATGTGTGTGggtgagatcccataaagatacataggtttcctgtaaggtgaccattttggt Alignment from CESAR gATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGg cttaaaagtcattcagtcaagtcaacactacctgtcgtttctcccggcaggATGCCAGATCCAGACTTCCACAGTGATGATGTTAAAATGTGTGTGggtgagatcccataaagatacataggtttcctgtaaggtgaccattttggt Alignment from Spaln_aa2Genome GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG cttaaaagtcattcagtcaagtcaacactacctgtcgtttctcccggcagGATGCCAGATCCAGACTTCCACAGTGATGATGTTAAAATGTGTGTGGgtgagatcccataaagatacataggtttcctgtaaggtgaccattttggt Alignment from Spaln_nt2Genome GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG cttaaaagtcattcagtcaagtcaacactacctgtcgtttctcccggcagGATGCCAGATCCAGACTTCCACAGTGATGATGTTAAAATGTGTGTGGgtgagatcccataaagatacataggtttcctgtaaggtgaccattttggt Alignment from Pairagon GATGCCGGATCCAGACTT-CACAGTGAATGATGTCAAAATGTGTGTGG cttaaaagtcattcagtcaagtcaacactacctgtcgtttctcccggcagGATGCCAGATCCAGACTTCCACAGTG-ATGATGTTAAAATGTGTGTGGgtgagatcccataaagatacataggtttcctgtaaggtgaccattttggt Alignment from Exonerate_protein2genome GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG cttaaaagtcattcagtcaagtcaacactacctgtcgtttctcccggcagGATGCCAGATCCAGACTTCCACAGTGATGATGTTAAAATGTGTGTGGgtgagatcccataaagatacataggtttcctgtaaggtgaccattttggt Alignment from Exonerate_coding2genome GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG cttaaaagtcattcagtcaagtcaacactacctgtcgtttctcccggcagGATGCCAGATCCAGACTTCCACAGTGATGATGTTAAAATGTGTGTGGgtgagatcccataaagatacataggtttcctgtaaggtgaccattttggt Alignment from GeneWise GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG cttaaaagtcattcagtcaagtcaacactacctgtcgtttctcccggcagGATGCCAGATCCAGACTTCCACAGTGATGATGTTAAAATGTGTGTGGgtgagatcccataaagatacataggtttcctgtaaggtgaccattttggt #### Kif11_ID7326_16 --> 0 - 0 Original Alignment GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAAC-ACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG ctggtttcatttaatgaggaacacccaaaccagggcctctctgtgcctagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCCTGAGTATACTATGTAACAATCTACATGAGCTCCAAGACAACCACGGTCT-TTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACCGAAGACCTTAGGACAATAAAGGAGGCCCATTCCCAGgtaggtagagggggtgctacattgagtgacaccagttaattaacttgggg Alignment from CESAR GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG ctggtttcatttaatgaggaacacccaaaccagggcctctctgtgcctagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCCTGAGTATACTATGTAACAATCTACATGAGCTCCAAGACAACCACGGTCTTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACCGAAGACCTTAGGACAATAAAGGAGGCCCATTCCCAGgtaggtagagggggtgctacattgagtgacaccagttaattaacttgggg Alignment from Spaln_aa2Genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG ctggtttcatttaatgaggaacacccaaaccagggcctctctgtgcctagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCCTGAGTATACTATGTAACAATCTACATGAGCTCCAAGACAACCACGGTCTTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACCGAAGACCTTAGGACAATAAAGGAGGCCCATTCCCAGgtaggtagagggggtgctacattgagtgacaccagttaattaacttgggg Alignment from Spaln_nt2Genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG ctggtttcatttaatgaggaacacccaaaccagggcctctctgtgcctagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCCTGAGTATACTATGTAACAATCTACATGAGCTCCAAGACAACCACGGTCTTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACCGAAGACCTTAGGACAATAAAGGAGGCCCATTCCCAGgtaggtagagggggtgctacattgagtgacaccagttaattaacttgggg Alignment from Pairagon GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG ctggtttcatttaatgaggaacacccaaaccagggcctctctgtgcctagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCCTGAGTATACTATGTAACAATCTACATGAGCTCCAAGACAACCACGGTCTTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACCGAAGACCTTAGGACAATAAAGGAGGCCCATTCCCAGgtaggtagagggggtgctacattgagtgacaccagttaattaacttgggg Alignment from Exonerate_protein2genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG ctggtttcatttaatgaggaacacccaaaccagggcctctctgtgcctagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCCTGAGTATACTATGTAACAATCTACATGAGCTCCAAGACAACCACGGTCTTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACCGAAGACCTTAGGACAATAAAGGAGGCCCATTCCCAGgtaggtagagggggtgctacattgagtgacaccagttaattaacttgggg Alignment from Exonerate_coding2genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG ctggtttcatttaatgaggaacacccaaaccagggcctctctgtgcctagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCCTGAGTATACTATGTAACAATCTACATGAGCTCCAAGACAACCACGGTCTTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACCGAAGACCTTAGGACAATAAAGGAGGCCCATTCCCAGgtaggtagagggggtgctacattgagtgacaccagttaattaacttgggg Alignment from GeneWise GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG ctggtttcatttaatgaggaacacccaaaccagggcctctctgtgcctagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCCTGAGTATACTATGTAACAATCTACATGAGCTCCAAGACAACCACGGTCTTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACCGAAGACCTTAGGACAATAAAGGAGGCCCATTCCCAGgtaggtagagggggtgctacattgagtgacaccagttaattaacttgggg #### Kif20b_ID7001_6 --> 0 - 1 Original Alignment GTTACCATACATAATGAC-AGTTATGACGTTCTTTGTg cggagggcccaaagagcactcaatattaacttaagccttggtttccccagGTTCCAATACATAATGAACAGTT-TGATATACTCTGCggtaagttctttcccctacttatgttcttttacttctttggagattttctg Alignment from CESAR GTTACCATACATAATGACAGTTATGACGTTCTTTGTg cggagggcccaaagagcactcaatattaacttaagccttggtttccccagGTTCCAATACATAATGAACAGTTTGATATACTCTGCggtaagttctttcccctacttatgttcttttacttctttggagattttctg Alignment from Spaln_aa2Genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTG cggagggcccaaagagcactcaatattaacttaagccttggtttccccagGTTCCAATACATAATGAACAGTTTGATATACTCTGCGgtaagttctttcccctacttatgttcttttacttctttggagattttctg Alignment from Spaln_nt2Genome GTTACCATACATAATGA-CAGTTATGACGTTCTTTGTG cggagggcccaaagagcactcaatattaacttaagccttggtttccccagGTTCCAATACATAATGAACAGTT-TGATATACTCTGCGgtaagttctttcccctacttatgttcttttacttctttggagattttctg Alignment from Pairagon GTTACCATACATAATG-ACAGTTATGACGTTCTTTGTG cggagggcccaaagagcactcaatattaacttaagccttggtttccccagGTTCCAATACATAATGAACAGTT-TGATATACTCTGCGgtaagttctttcccctacttatgttcttttacttctttggagattttctg Alignment from Exonerate_protein2genome cggagggcccaaagagcactcaatattaacttaagccttggtttccccaggttccaatacataatgaacagtttgatatactctgcggtaagttctttcccctacttatgttcttttacttctttggagattttctg Alignment from Exonerate_coding2genome cggagggcccaaagagcactcaatattaacttaagccttggtttccccaggttccaatacataatgaacagtttgatatactctgcggtaagttctttcccctacttatgttcttttacttctttggagattttctg Alignment from GeneWise GTTACCATACATAATGACAGTTATGACGTTCTTTGTG cggagggcccaaagagcactcaatattaacttaagccttggtttccccagGTTCCAATACATAATGAACAGTTTGATATACTCTGCGgtaagttctttcccctacttatgttcttttacttctttggagattttctg #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTT-GAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg attttaaggtttgctttgcagttgaactacgtaaccctttttccttccagggCACTTTACAAACTCTTTGACTATTCCAGAGTTTCGAGGAAC-TGTCAACAGG---------CCAAGTTTAAATGTAGATAATATAAAGTATTCTGTGTGGGTCTCATTTTTTGAAATCTATAACAAAAGTATATTC---TTGTTTGTGCCTGTTTCTTCCAAGTTTCAAAAGAGAAAAATGTTACGAATTGCTCAGGACATAAAGGGATATTCTTTTATTAAAggtatggccatcttgttaaagagggagcatatgttacaactatttcacatt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg attttaaggtttgctttgcagttgaactacgtaaccctttttccttccagggCACTTTACAAACTCTTTGACTATTCCAGAGTTTCGAGGAACTGTCAAC---------AGGCCAAGTTTAAATGTAGATAATATAAAGTATTCTGTGTGGGTCTCATTTTTTGAAATCTATAACAAAAGTATATTC---TTGTTTGTGCCTGTTTCTTCCAAGTTTCAAAAGAGAAAAATGTTACGAATTGCTCAGGACATAAAGGGATATTCTTTTATTAAAggtatggccatcttgttaaagagggagcatatgttacaactatttcacatt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG attttaaggtttgctttgcagttgaactacgtaaccctttttccttccagGGCACTTTACAAACTCTTTGACTATTCCAGAGTTTCGAGGAACTGTCAAC---------AGGCCAAGTTTAAATGTAGATAATATAAAGTATTCTGTGTGGGTCTCATTTTTTGAAATCTATAACAAAAGTATATTC---TTGTTTGTGCCTGTTTCTTCCAAGTTTCAAAAGAGAAAAATGTTACGAATTGCTCAGGACATAAAGGGATATTCTTTTATTAAAGgtatggccatcttgttaaagagggagcatatgttacaactatttcacatt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG attttaaggtttgctttgcagttgaactacgtaaccctttttccttccagGGCACTTTACAAACTCTTTGACTATTCCAGAGTTTCGAGGAACTGTCAACAG---------GCCAAGTTTAAATGTAGATAATATAAAGTATTCTGTGTGGGTCTCATTTTTTGAAATCTATAACAAAAGTATATTC---TTGTTTGTGCCTGTTTCTTCCAAGTTTCAAAAGAGAAAAATGTTACGAATTGCTCAGGACATAAAGGGATATTCTTTTATTAAAGgtatggccatcttgttaaagagggagcatatgttacaactatttcacatt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG attttaaggtttgctttgcagttgaactacgtaaccctttttccttccagGGCACTTTACAAACTCTTTGACTATTCCAGAGTTTCGAGGAACTGTCAACAG---------GCCAAGTTTAAATGTAGATAATATAAAGTATTCTGTGTGGGTCTCATTTTTTGAAATCTATAACAAAAGTATATTC---TTGTTTGTGCCTGTTTCTTCCAAGTTTCAAAAGAGAAAAATGTTACGAATTGCTCAGGACATAAAGGGATATTCTTTTATTAAAGgtatggccatcttgttaaagagggagcatatgttacaactatttcacatt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG attttaaggtttgctttgcagttgaactacgtaaccctttttccttccagGGCACTTTACAAACTCTTTGACTATTCCAGAGTTTCGAGGAACTGTCAAC---------AGGCCAAGTTTAAATGTAGATAATATAAAGTATTCTGTGTGGGTCTCATTTTTTGAAATCTATAACAAAAGTATATTC---TTGTTTGTGCCTGTTTCTTCCAAGTTTCAAAAGAGAAAAATGTTACGAATTGCTCAGGACATAAAGGGATATTCTTTTATTAAAGgtatggccatcttgttaaagagggagcatatgttacaactatttcacatt Alignment from Exonerate_coding2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTGGACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG attttaaggtttgCTTTGCAGTTGAACTACGTAACCCTTTTTCCTTCCAGGGCACTTTACAAACTCTTTGACTATTCCAGAGTTTCGAGGAACTGTCAAC---------AGGCCAAGTTTAAATGTAGATAATATAAAGTATTCTGTGTGGGTCTCATTTTTTGAAATCTATAACAAAAGTATATTC---TTGTTTGTGCCTGTTTCTTCCAAGTTTCAAAAGAGAAAAATGTTACGAATTGCTCAGGACATAAAGGGATATTCTTTTATTAAAGgtatggccatcttgttaaagagggagcatatgttacaactatttcacatt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG attttaaggtttgctttgcagttgaactacgtaaccctttttccttccagGGCACTTTACAAACTCTTTGACTATTCCAGAGTTTCGAGGAACTGTCAAC---------AGGCCAAGTTTAAATGTAGATAATATAAAGTATTCTGTGTGGGTCTCATTTTTTGAAATCTATAACAAAAGTATATTC---TTGTTTGTGCCTGTTTCTTCCAAGTTTCAAAAGAGAAAAATGTTACGAATTGCTCAGGACATAAAGGGATATTCTTTTATTAAAGgtatggccatcttgttaaagagggagcatatgttacaactatttcacatt #### Kif20b_ID7008_13 --> 0 - 2 Original Alignment GAACTGTTGGATTTA-ATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTACATAGAAA-GTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATaagtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from CESAR GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTACATAGAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATaagtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Spaln_aa2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTACATAGAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Spaln_nt2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTACATAGAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Pairagon GAACTGTTGGATTTA-ATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTACATAG-AAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Exonerate_protein2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTACATAGAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Exonerate_coding2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTACATAGAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from GeneWise GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTACATAGAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGA-GCACTGGAGATCCGGGAGAAG agctccccattagccgtgaagcgaggtaggtgctttcattttctttgtagGTA------GCCCTTAATAATCTGGCAGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGACTCAC-GGAGCTCCAGGAG---gtgagtataggcataatagtgccacacggatgttatacagcaccaaaact Alignment from CESAR GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agctccccattagccgtgaagcgaggtaggtgctttcattttctttgtagGTAGCC------CTTAATAATCTGGCAGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGACTCACGGAGCTCCAGGAG---gtgagtataggcataatagtgccacacggatgttatacagcaccaaa Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAG agctccccattagccgtgaagcgaggtaggtgctttcattttctttgtagGTAGCC------CTTAATAATCTGGCAGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGACTCACGGAGCTCCAGGAGgtgagtataggcataatagtgccacacggatgttatacagcaccaaaact Alignment from Spaln_nt2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAG agctccccattagccgtgaagcgaggtaggtgctttcattttctttgtagGTAG------CCCTTAATAATCTGGCAGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGACTCACGGAGCTCCAGGAGgtgagtataggcataatagtgccacacggatgttatacagcaccaaaact Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAG agctccccattagccgtgaagcgaggtaggtgctttcattttctttgtagGTAG------CCCTTAATAATCTGGCAGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGACTCACGGAGCTCCAGGAGgtgagtataggcataatagtgccacacggatgttatacagcaccaaaact Alignment from Exonerate_protein2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agctccccattagccgtgaagcgaggtaggtgctttcattttctttgtagGTAGCC------CTTAATAATCTGGCAGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGACTCACGGAGCTCCAGGAG---gtgagtataggcataatagtgccacacggatgttatacagcaccaaa Alignment from Exonerate_coding2genome AACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAGGTCCTG AGCTCCCCATTAGCCGTGAAGCGAGGTAGGTGCTTTCATTTTCTTTGTAGGTAGCCCTTAATAATCTGgcagtgctttatggcaaacggggtaactaccaggaagctgagcctcactgcagaagactcacggagctccaggaggtgagtataggcataatagtgccacacggatgttatacagcaccaaaact Alignment from GeneWise --CTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG agctccccattagccgtgaagcgaggtaggtgctttcattttctttgtaggtagCCCTTAATAATCTGGCAGTGCTTTATGGCAAACGGGGTAACTACCAGGAAGCTGAGCCTCACTGCAGAAGACTCACGGAGCTC---CAGGAGgtgagtataggcataatagtgccacacggatgttatacagcaccaaaact #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAAGAC-TCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg agcaatcaacattcaacactagatggtgctctttcctcgattcactgaagAAAGAGAAA------GTCCCCAAAGACCTTTCTTG-TGACCTATTTCCAAATGAAGATGAAGAGAGGTCAggtaagaagggtgaattaatcgaggtaagcaccagctagttaggagtctag Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg agcaatcaacattcaacactagatggtgctctttcctcgattcactgaagAAAGAGAAA------GTCCCCAAAGACCTTTCTTGTGACCTATTTCCAAATGAAGATGAAGAGAGGTCAggtaagaagggtgaattaatcgaggtaagcaccagctagttaggagtctag Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG agcaatcaacattcaacactagatggtgctctttcctcgattcactgaagAAAGAGAAA------GTCCCCAAAGACCTTTCTTGTGACCTATTTCCAAATGAAGATGAAGAGAGGTCAGgtaagaagggtgaattaatcgaggtaagcaccagctagttaggagtctag Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG agcaatcaacattcaacactagatggtgctctttcctcgattcactgaagAAAGAGA------AAGTCCCCAAAGACCTTTCTTGTGACCTATTTCCAAATGAAGATGAAGAGAGGTCAGgtaagaagggtgaattaatcgaggtaagcaccagctagttaggagtctag Alignment from Pairagon ---------------------------------------------------AGGAGAAGGGTGATGTCCCCAAAGAC--TCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG AGCAATCAACATTCAACACTAGATGGTGCTCTTTCCTCGATTCACTGAAGAAAGAGAAA------GTCCCCAAAGACCTTTCTTG--TGACCTATTTCCAAATGAAGATGAAGAGAGGTCAGgtaagaagggtgaattaatcgaggtaagcaccagctagttaggagtctag Alignment from Exonerate_protein2genome AAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG agcaatcaacattcaacactagatggtgctctttcctcgattcactgaagAAAGAGAAAGTCCCCAAAGACCTTTCTTGTGACCTATTTCCAAATGAAGATGAAGAGAGGTCAGgtaagaagggtgaattaatcgaggtaagcaccagctagttaggagtctag Alignment from Exonerate_coding2genome AAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG agcaatcaacattcaacactagatggtgctctttcctcgattcactgaagAAAGAGAAAGTCCCCAAAGACCTTTCTTGTGACCTATTTCCAAATGAAGATGAAGAGAGGTCAGgtaagaagggtgaattaatcgaggtaagcaccagctagttaggagtctag Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG agcaatcaacattcaacactagatggtgctctttcctcgattcactgaagAAAGAGAAA------GTCCCCAAAGACCTTTCTTGTGACCTATTTCCAAATGAAGATGAAGAGAGGTCAGgtaagaagggtgaattaatcgaggtaagcaccagctagttaggagtctag #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTC-AGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTCAGTC-TCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTggtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTCAGTCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTggtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTCAGTCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTCAGTCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTCAGTCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTCAGTCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTCAGTCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTCAGTCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAG-CTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACCTTATTCCAA-AAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACCTTATTCCAAAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACCTTATTCCAAAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACCTTATTCCAAAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACCTTATTCCAAAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACCTTATTCCAAAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACCTTATTCCAAAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACCTTATTCCAAAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct #### Ldb1_ID9694_6 --> 2 - 0 Original Alignment ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAG-GCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggttctgggtgagatgctttctctctttttccatgtttgtctcattttagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAAGAGCGCATTCCACA-CAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagcaaagtgtagggatagcataacctgataccatgagaggcaacacc Alignment from CESAR ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggttctgggtgagatgctttctctctttttccatgtttgtctcattttagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAAGAGCGCATTCCACACAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagcaaagtgtagggatagcataacctgataccatgagaggcaacacc Alignment from Spaln_aa2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggttctgggtgagatgctttctctctttttccatgtttgtctcattttagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAAGAGCGCATTCCACACAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagcaaagtgtagggatagcataacctgataccatgagaggcaacacc Alignment from Spaln_nt2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggttctgggtgagatgctttctctctttttccatgtttgtctcattttagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAAGAGCGCATTCCACACAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagcaaagtgtagggatagcataacctgataccatgagaggcaacacc Alignment from Pairagon CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAG-GCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggttctgggtgagatgctttctctctttttccatgtttgtctcattttagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAAGAGCGCATTCCACA-CAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagcaaagtgtagggatagcataacctgataccatgagaggcaacacc Alignment from Exonerate_protein2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggttctgggtgagatgctttctctctttttccatgtttgtctcattttagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAAGAGCGCATTCCACACAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagcaaagtgtagggatagcataacctgataccatgagaggcaacacc Alignment from Exonerate_coding2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggttctgggtgagatgctttctctctttttccatgtttgtctcattttagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAAGAGCGCATTCCACACAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagcaaagtgtagggatagcataacctgataccatgagaggcaacacc Alignment from GeneWise ----------------------------------------------------ATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG GGTTCTGGGTGAGATGCTTTCTCTCTTTTTCCATGTTTGTCTCATTTTAGCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAAGAGCGCATTCCACACAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagcaaagtgtagggatagcataacctgataccatgagaggcaacacc #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGG-TGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGCTGGGATG-TTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACagtgagttggttctgggtgagatgctttctctctttaagtgaccctcttga Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGCTGGGATGTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACagtgagttggttctgggtgagatgctttctctctttttccatgtttgtctc Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGCTGGGATGTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttaagtgaccctcttga Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGG-TGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGCTGGGATG-TTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttaagtgaccctcttga Alignment from Pairagon ------------------------------------------------AGGAGTGTGACAATCTCTGG-TGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA AGGATGAGAGGTTGATGGGGGTGTGTCTCGTATGATTTTTCATATTAAAGGAGTGTGATAATCTTTGGCTGGGATG-TTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttaagtgaccctcttga Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGCTGGGATGTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttaagtgaccctcttga Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGCTGGGATGTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttaagtgaccctcttga Alignment from GeneWise GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGCTGGGATGTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttaagtgaccctcttga #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGA-ATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcaggAGGCACAGTCCATATGGTAATCAGACTGATTATAGGCATATTTG-GCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtctcaaaaattctgcgtt Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcaggAGGCACAGTCCATATGGTAATCAGACTGATTATAGGCATATTTGGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtctcgtatgatttttcat Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGCATATTTGGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtctcaaaaattctgcgtt Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGA-ATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGCATATTTG-GCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtctcaaaaattctgcgtt Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGA-ATATTTGAGCTTAACAAACGGCTACAGAACTGGACAG---------------------------------------------------- ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGCATATTTG-GCTAAACAAGCGGCGTCAGAATTGGACAGAAGTAGAACAGGATGAGAGGTTGATGGGGGTGTGTCTCAAAAATTCTGCGTT Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGCATATTTGGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtctcaaaaattctgcgtt Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGCATATTTGGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtctcaaaaattctgcgtt Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG-------------------------------------------------- ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGCATATTTGGCTAAACAAGCGGCGTCAGAATTGGACAGAAGTAGAACAGGATGAGAGGTTGATGGGGGTGTGTCTCAAAAATTCTGCGTT #### Lipf_ID6846_2 --> 0 - 1 Original Alignment AGTCAGATGATAACT-TACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg gtccacttaatcacactaccattttttttggttctctttcccttttatagAGTCAAATCGTAACTCTATTGGG-ATATCCAAGTGAAGAATATGAAGGGGTGTCTAAAGATGGATATATTCTGGGGATCTATAGAATTCCCTATAGCAAAAGGAACTCTGAAAACATAggtacgtatatcctgttaatgggaagaaaaatcatgagcaagtcaatccac Alignment from CESAR AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg gtccacttaatcacactaccattttttttggttctctttcccttttatagAGTCAAATCGTAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTAAAGATGGATATATTCTGGGGATCTATAGAATTCCCTATAGCAAAAGGAACTCTGAAAACATAggtacgtatatcctgttaatgggaagaaaaatcatgagcaagtcaatccac Alignment from Spaln_aa2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccacttaatcacactaccattttttttggttctctttcccttttatagAGTCAAATCGTAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTAAAGATGGATATATTCTGGGGATCTATAGAATTCCCTATAGCAAAAGGAACTCTGAAAACATAGgtacgtatatcctgttaatgggaagaaaaatcatgagcaagtcaatccac Alignment from Spaln_nt2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCC--------------------------------------------TTATGGGAAGAAAAATTCTGAG-AA gtccacttaatcacactaccattttttttggttctctttcccttttatagAGTCAAATCGTAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTAAAGATGGATATATTCTGGGGATCTATAGAATTCCCTATAGCAAAAGGAACTCTGAAAACATAGGTACGTATATCCTGTTAATGGGAAGAAAAATCATGAGCAAgtcaatccac Alignment from Pairagon AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccacttaatcacactaccattttttttggttctctttcccttttatagAGTCAAATCGTAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTAAAGATGGATATATTCTGGGGATCTATAGAATTCCCTATAGCAAAAGGAACTCTGAAAACATAGgtacgtatatcctgttaatgggaagaaaaatcatgagcaagtcaatccac Alignment from Exonerate_protein2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccacttaatcacactaccattttttttggttctctttcccttttatagAGTCAAATCGTAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTAAAGATGGATATATTCTGGGGATCTATAGAATTCCCTATAGCAAAAGGAACTCTGAAAACATAGgtacgtatatcctgttaatgggaagaaaaatcatgagcaagtcaatccac Alignment from Exonerate_coding2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccacttaatcacactaccattttttttggttctctttcccttttatagAGTCAAATCGTAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTAAAGATGGATATATTCTGGGGATCTATAGAATTCCCTATAGCAAAAGGAACTCTGAAAACATAGgtacgtatatcctgttaatgggaagaaaaatcatgagcaagtcaatccac Alignment from GeneWise AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccacttaatcacactaccattttttttggttctctttcccttttatagAGTCAAATCGTAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTGTCTAAAGATGGATATATTCTGGGGATCTATAGAATTCCCTATAGCAAAAGGAACTCTGAAAACATAGgtacgtatatcctgttaatgggaagaaaaatcatgagcaagtcaatccac #### Ltbp3_ID1251_3 --> 2 - 0 Original Alignment tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCT-GAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCAT---CCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT aatcagacccattattaatcgggtgctagctctgttttctcttacattagttCAGGCTCCCCCTTCGCTTGTGAACGTGCGGGTCCATCATTCCTTAGAACCCTCTGTGCAGGAGCAGCGCATTGAAAGACCTAATACTCGAAGGCCCAG-TTCTTTACAGCATTTACTGCCTCACCACCTAACACCCCAGCACCCAAGAGCACCTACCCGGAAGCCACTTGGACATTGTTTTCAAGACACATTGCCCAAACAGCCAgtgagggagggttctaccccttaagagttgccctgtcagaaagtgttacc Alignment from CESAR tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCC---AAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT aatcagacccattattaatcgggtgctagctctgttttctcttacattagttCAGGCTCCCCCTTCGCTTGTGAACGTGCGGGTCCATCATTCCTTAGAACCCTCTGTGCAGGAGCAGCGCATTGAAAGACCTAATACTCGAAGGCCCAGTTCTTTACAGCATTTACTGCCTCACCACCTAACACCCCAGCACCCAAGAGCACCTACCCGGAAGCCACTTGGACATTGTTTTCAAGACACATTGCCCAAACAGCCAgtgagggagggttctaccccttaagagttgccctgtcagaaagtgttacc Alignment from Spaln_aa2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCC---AAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT aatcagacccattattaatcgggtgctagctctgttttctcttacattagTTCAGGCTCCCCCTTCGCTTGTGAACGTGCGGGTCCATCATTCCTTAGAACCCTCTGTGCAGGAGCAGCGCATTGAAAGACCTAATACTCGAAGGCCCAGTTCTTTACAGCATTTACTGCCTCACCACCTAACACCCCAGCACCCAAGAGCACCTACCCGGAAGCCACTTGGACATTGTTTTCAAGACACATTGCCCAAACAGCCAgtgagggagggttctaccccttaagagttgccctgtcagaaagtgttacc Alignment from Spaln_nt2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCT-GAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCC---AAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT aatcagacccattattaatcgggtgctagctctgttttctcttacattagTTCAGGCTCCCCCTTCGCTTGTGAACGTGCGGGTCCATCATTCCTTAGAACCCTCTGTGCAGGAGCAGCGCATTGAAAGACCTAATACTCGAAGGCCCAG-TTCTTTACAGCATTTACTGCCTCACCACCTAACACCCCAGCACCCAAGAGCACCTACCCGGAAGCCACTTGGACATTGTTTTCAAGACACATTGCCCAAACAGCCAgtgagggagggttctaccccttaagagttgccctgtcagaaagtgttacc Alignment from Pairagon TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCT-GAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCC---AAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT aatcagacccattattaatcgggtgctagctctgttttctcttacattagTTCAGGCTCCCCCTTCGCTTGTGAACGTGCGGGTCCATCATTCCTTAGAACCCTCTGTGCAGGAGCAGCGCATTGAAAGACCTAATACTCGAAGGCCCAG-TTCTTTACAGCATTTACTGCCTCACCACCTAACACCCCAGCACCCAAGAGCACCTACCCGGAAGCCACTTGGACATTGTTTTCAAGACACATTGCCCAAACAGCCAgtgagggagggttctaccccttaagagttgccctgtcagaaagtgttacc Alignment from Exonerate_protein2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCC---AAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT aatcagacccattattaatcgggtgctagctctgttttctcttacattagTTCAGGCTCCCCCTTCGCTTGTGAACGTGCGGGTCCATCATTCCTTAGAACCCTCTGTGCAGGAGCAGCGCATTGAAAGACCTAATACTCGAAGGCCCAGTTCTTTACAGCATTTACTGCCTCACCACCTAACACCCCAGCACCCAAGAGCACCTACCCGGAAGCCACTTGGACATTGTTTTCAAGACACATTGCCCAAACAGCCAgtgagggagggttctaccccttaagagttgccctgtcagaaagtgttacc Alignment from Exonerate_coding2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCC---AAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT aatcagacccattattaatcgggtgctagctctgttttctcttacattagTTCAGGCTCCCCCTTCGCTTGTGAACGTGCGGGTCCATCATTCCTTAGAACCCTCTGTGCAGGAGCAGCGCATTGAAAGACCTAATACTCGAAGGCCCAGTTCTTTACAGCATTTACTGCCTCACCACCTAACACCCCAGCACCCAAGAGCACCTACCCGGAAGCCACTTGGACATTGTTTTCAAGACACATTGCCCAAACAGCCAgtgagggagggttctaccccttaagagttgccctgtcagaaagtgttacc Alignment from GeneWise TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCC---AAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT aatcagacccattattaatcgggtgctagctctgttttctcttacattagTTCAGGCTCCCCCTTCGCTTGTGAACGTGCGGGTCCATCATTCCTTAGAACCCTCTGTGCAGGAGCAGCGCATTGAAAGACCTAATACTCGAAGGCCCAGTTCTTTACAGCATTTACTGCCTCACCACCTAACACCCCAGCACCCAAGAGCACCTACCCGGAAGCCACTTGGACATTGTTTTCAAGACACATTGCCCAAACAGCCAgtgagggagggttctaccccttaagagttgccctgtcagaaagtgttacc #### Ltbp3_ID1252_4 --> 0 - 1 Original Alignment TGTGGCAGCAACCCT-TTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGt ccattccaaccatcaagctggtgctgataccctgtcccttctgtccctagTGTGGCAGCAACCCTCTTGC-TGGTCTTACCAAGCAGGAAGATTGCTGTGGTAGCATAGGTACTGCCTGGGGACCAAGCAAGTGTCACAAGTGCCCACAGCTTCAGtgtaagagcataacatggacttacaatttttctgatcatgattagtagttg Alignment from CESAR TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGt ccattccaaccatcaagctggtgctgataccctgtcccttctgtccctagTGTGGCAGCAACCCTCTTGCTGGTCTTACCAAGCAGGAAGATTGCTGTGGTAGCATAGGTACTGCCTGGGGACCAAGCAAGTGTCACAAGTGCCCACAGCTTCAGtgtaagagcataacatggacttacaatttttctgatcatgattagtagttg Alignment from Spaln_aa2Genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccattccaaccatcaagctggtgctgataccctgtcccttctgtccctagTGTGGCAGCAACCCTCTTGCTGGTCTTACCAAGCAGGAAGATTGCTGTGGTAGCATAGGTACTGCCTGGGGACCAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagagcataacatggacttacaatttttctgatcatgattagtagttg Alignment from Spaln_nt2Genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccattccaaccatcaagctggtgctgataccctgtcccttctgtccctagTGTGGCAGCAACCCTCTTGCTGGTCTTACCAAGCAGGAAGATTGCTGTGGTAGCATAGGTACTGCCTGGGGACCAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagagcataacatggacttacaatttttctgatcatgattagtagttg Alignment from Pairagon TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccattccaaccatcaagctggtgctgataccctgtcccttctgtccctagTGTGGCAGCAACCCTCTTGCTGGTCTTACCAAGCAGGAAGATTGCTGTGGTAGCATAGGTACTGCCTGGGGACCAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagagcataacatggacttacaatttttctgatcatgattagtagttg Alignment from Exonerate_protein2genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccattccaaccatcaagctggtgctgataccctgtcccttctgtccctagTGTGGCAGCAACCCTCTTGCTGGTCTTACCAAGCAGGAAGATTGCTGTGGTAGCATAGGTACTGCCTGGGGACCAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagagcataacatggacttacaatttttctgatcatgattagtagttg Alignment from Exonerate_coding2genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccattccaaccatcaagctggtgctgataccctgtcccttctgtccctagTGTGGCAGCAACCCTCTTGCTGGTCTTACCAAGCAGGAAGATTGCTGTGGTAGCATAGGTACTGCCTGGGGACCAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagagcataacatggacttacaatttttctgatcatgattagtagttg Alignment from GeneWise TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccattccaaccatcaagctggtgctgataccctgtcccttctgtccctagTGTGGCAGCAACCCTCTTGCTGGTCTTACCAAGCAGGAAGATTGCTGTGGTAGCATAGGTACTGCCTGGGGACCAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagagcataacatggacttacaatttttctgatcatgattagtagttg #### Ltbp3_ID1253_5 --> 2 - 1 Original Alignment atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTAC-AAGAGGCTCAACAGCACCCACTGCCAGg taccaagcttactctctcttttcactatgtgccctctttgcctcctgcagatACAGGAGTACAAAAGCCTGGACCTGTTCGAGGG---GTGGGCACTGACTGTCCCAAAGGCTATCAAAAGACTTA-TAGCACCCATTCCCAGggtgagcatcaccaatgaccgaagcttccattaattgggcaataattgttg Alignment from CESAR atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg taccaagcttactctctcttttcactatgtgccctctttgcctcctgcagatACAGGAGTACAAAAGCCTGGACCTGTTCGAGGG---GTGGGCACTGACTGTCCCAAAGGCTATCAAAAGACTTATAGCACCCATTCCCAGggtgagcatcaccaatgaccgaagcttccattaattgggcaataattgttg Alignment from Spaln_aa2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccaagcttactctctcttttcactatgtgccctctttgcctcctgcagATACAGGAGTACAAAAGCCTGGACCTGTTCGAGGG---GTGGGCACTGACTGTCCCAAAGGCTATCAAAAGACTTATAGCACCCATTCCCAGGgtgagcatcaccaatgaccgaagcttccattaattgggcaataattgttg Alignment from Spaln_nt2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTA-CAAGAGGCTCAACAGCACCCACTGCCAGG taccaagcttactctctcttttcactatgtgccctctttgcctcctgcagATACAGGAGTACAAAAGCCTGGACCTGTTCGAGG---GGTGGGCACTGACTGTCCCAAAGGCTATCAAAAGACT-TATAGCACCCATTCCCAGGgtgagcatcaccaatgaccgaagcttccattaattgggcaataattgttg Alignment from Pairagon ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAA--------CAGCACCCACTGCCAGG taccaagcttactctctcttttcactatgtgccctctttgcctcctgcagATACAGGAGTACAAAAGCCTGGACCTGTTCGAGG---GGTGGGCACTGACTGTCCCAAAGGCTA--------TCAAAAGACTTATAGCACCCATTCCCAGGgtgagcatcaccaatgaccgaagcttccattaattgggcaataattgttg Alignment from Exonerate_protein2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccaagcttactctctcttttcactatgtgccctctttgcctcctgcagATACAGGAGTACAAAAGCCTGGACCTGTTCGAGGG---GTGGGCACTGACTGTCCCAAAGGCTATCAAAAGACTTATAGCACCCATTCCCAGGgtgagcatcaccaatgaccgaagcttccattaattgggcaataattgttg Alignment from Exonerate_coding2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccaagcttactctctcttttcactatgtgccctctttgcctcctgcagATACAGGAGTACAAAAGCCTGGACCTGTTCGAGGG---GTGGGCACTGACTGTCCCAAAGGCTATCAAAAGACTTATAGCACCCATTCCCAGGgtgagcatcaccaatgaccgaagcttccattaattgggcaataattgttg Alignment from GeneWise ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG taccaagcttactctctcttttcactatgtgccctctttgcctcctgcagATACAGGAGTACAAAAGCCTGGACCTGTTCGAGGG---GTGGGCACTGACTGTCCCAAAGGCTATCAAAAGACTTATAGCACCCATTCCCAGGgtgagcatcaccaatgaccgaagcttccattaattgggcaataattgttg #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTCGTCTGCCCAC-TGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAggtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTCGTCTGCCCACTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAggtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTCGTCTGCCCACTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTCGTCTGCCC-ACTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTCGTCTGCCCA-CTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTCGTCTGCCCACTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTCGTCTGCCCACTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTCGTCTGCCCACTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCA-CCCCCCCGGCCTTACCCAg tgtagtgccttggattacaaacatgaggataactccggtcttcctcccagCCAGTGAGTGAGGAGCGTTCTGTACAACAGAGCCACCCTGCCACTGTTACCGCGCCCAT-TCAGCCTTTCCTTggtgagttggttggtgggggacagactgtacctacaggggtaagcctagct Alignment from CESAR CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tgtagtgccttggattacaaacatgaggataactccggtcttcctcccagCCAGTGAGTGAGGAGCGTTCTGTACAACAGAGCCACCCTGCCACTGTTACCGCGCCCATTCAGCCTTTCCTTggtgagttggttggtgggggacagactgtacctacaggggtaagcctagct Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tgtagtgccttggattacaaacatgaggataactccggtcttcctcccagCCAGTGAGTGAGGAGCGTTCTGTACAACAGAGCCACCCTGCCACTGTTACCGCGCCCATTCAGCCTTTCCTTGgtgagttggttggtgggggacagactgtacctacaggggtaagcctagct Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tgtagtgccttggattacaaacatgaggataactccggtcttcctcccagCCAGTGAGTGAGGAGCGTTCTGTACAACAGAGCCACCCTGCCACTGTTACCGCGCCCATTCAGCCTTTCCTTGgtgagttggttggtgggggacagactgtacctacaggggtaagcctagct Alignment from Pairagon CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACC---CCACT tgtagtgccttggattacaaacatgaggataactccggtcttcctcccagCCAGTGAGTGAGGAGCGTTCTGTACAACAGAGCCACCCTGCCACTgttaccgcgcccattcagcctttccttggtgagttggttggtgggggacagactgtacctacaggggtaagcctagct Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tgtagtgccttggattacaaacatgaggataactccggtcttcctcccagCCAGTGAGTGAGGAGCGTTCTGTACAACAGAGCCACCCTGCCACTGTTACCGCGCCCATTCAGCCTTTCCTTGgtgagttggttggtgggggacagactgtacctacaggggtaagcctagct Alignment from Exonerate_coding2genome TGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTAC tgtagtgccttggattacaaacatgaggataactccggtcttcctcccagccagTGAGTGAGGAGCGTTCTGTACAACAGAGCCACCCTGCCACTGTTACCGCGCCCATTCAGCCTTTCcttggtgagttggttggtgggggacagactgtacctacaggggtaagcctagct Alignment from GeneWise CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tgtagtgccttggattacaaacatgaggataactccggtcttcctcccagCCAGTGAGTGAGGAGCGTTCTGTACAACAGAGCCACCCTGCCACTGTTACCGCGCCCATTCAGCCTTTCCTTGgtgagttggttggtgggggacagactgtacctacaggggtaagcctagct #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGC-AACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagatTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCCAACTGTT-TCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAggtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagatTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCCAACTGTTTCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAggtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCCAACTGTTTCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCCAACTGTTTCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATG-CAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCCAACTGTT-TCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCCAACTGTTTCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Exonerate_coding2genome atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagatttaaatgagtgcacaaagccccatctgtgtggtgatggtggcttctgcatcaatttcccaggccactacacatgccaactgtttcctggttacaggctaaaggcctccagaccaccaatctgggaaggtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCCAACTGTTTCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGC-TACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tagggatataagatattagagaccacactcatactttcttataatttcagcaGAATTTCATAGG---TGTCCTGATGGTAAAGGCCTATATGCAAG-GAATAACATTGTGAACTATGGCATCCCTACCCACCGGggtgaggatgccaatcgaggataagtatcctgatgaggcatgactagcaac Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGC---TACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tagggatataagatattagagaccacactcatactttcttataatttcagcaGAATTTCATAGG---TGTCCTGATGGTAAAGGCCTATATGCAAGG---AATAACATTGTGAACTATGGCATCCCTACCCACCGGggtgaggatgccaatcgaggataagtatcctgatgaggcatgactagcaac Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tagggatataagatattagagaccacactcatactttcttataatttcagCAGAATTTCATAGG---TGTCCTGATGGTAAAGGCCTATATGCAAGGAATAACATTGTGAACTATGGCATCCCTACCCACCGGGgtgaggatgccaatcgaggataagtatcctgatgaggcatgactagcaac Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tagggatataagatattagagaccacactcatactttcttataatttcagCAGAATTTCATAG---GTGTCCTGATGGTAAAGGCCTATATGCAAGGAATAACATTGTGAACTATGGCATCCCTACCCACCGGGgtgaggatgccaatcgaggataagtatcctgatgaggcatgactagcaac Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGAC-----------AACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tagggatataagatattagagaccacactcatactttcttataatttcagCAGAATTTCATAG---GTGTCCTGATGGTAAAGGC-----------CTATATGCAAGGAATAACATTGTGAACTATGGCATCCCTACCCACCGGGgtgaggatgccaatcgaggataagtatcctgatgaggcatgactagcaac Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tagggatataagatattagagaccacactcatactttcttataatttcagCAGAATTTCATAGG---TGTCCTGATGGTAAAGGCCTATATGCAAGGAATAACATTGTGAACTATGGCATCCCTACCCACCGGGgtgaggatgccaatcgaggataagtatcctgatgaggcatgactagcaac Alignment from Exonerate_coding2genome tagggatataagatattagagaccacactcatactttcttataatttcagcagaatttcataggtgtcctgatggtaaaggcctatatgcaaggaataacattgtgaactatggcatccctacccaccggggtgaggatgccaatcgaggataagtatcctgatgaggcatgactagcaac Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tagggatataagatattagagaccacactcatactttcttataatttcagCAGAATTTCATAGG---TGTCCTGATGGTAAAGGCCTATATGCAAGGAATAACATTGTGAACTATGGCATCCCTACCCACCGGGgtgaggatgccaatcgaggataagtatcctgatgaggcatgactagcaac #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGC-AACCTGCTGGAGTGCGTGg aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagacACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTCAATC-TTTAGAGTGTGTAggttggttagactacttttccaatcaaggaaaacagctgtttaatctcctt Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagacACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTCAATCTTTAGAGTGTGTAggttggttagactacttttccaatcaaggaaaacagctgtttaacccctgc Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTCAATCTTTAGAGTGTGTAGgttggttagactacttttccaatcaaggaaaacagctgtttaatctcctt Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGG-CAACCTGCTGGAGTGCGTGG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTCAATCT-TTAGAGTGTGTAGgttggttagactacttttccaatcaaggaaaacagctgtttaatctcctt Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGgtcaatctttagagtgtgtaggttggttagactacttttccaatcaaggaaaacagctgtttaatctcctt Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTCAATCTTTAGAGTGTGTAGgttggttagactacttttccaatcaaggaaaacagctgtttaatctcctt Alignment from Exonerate_coding2genome aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagacactgatgaatgcatattgtttggggcagagatctgtaaggagggtaaattcgtgaacatgcagcctggctatgagtgctattgcaagcagggcttctatttcgatggtcaatctttagagtgtgtaggttggttagactacttttccaatcaaggaaaacagctgtttaatctcctt Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTCAATCTTTAGAGTGTGTAGgttggttagactacttttccaatcaaggaaaacagctgtttaatctcctt #### Ltbp3_ID1271_23 --> 2 - 1 Original Alignment acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGC-ACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg ttttccaatcaaggaaaacagctgtttaacccctgcctctctctctgcagatTTGGATGAGTGCTTAGATGAGTCTAACTGCAGGAATGGGGTATTTGAAAATACACATGGTGGCTACCGCTGTGCATGTCACACCAC-AACTGAATATAGCTCAGCTCAACATCAATGTTCAAGCCCTGAGGCGATGggtgaggcgttagaaaacaagcctcacaactcctgtaccttaagtgctgct Alignment from CESAR acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg ttttccaatcaaggaaaacagctgtttaacccctgcctctctctctgcagatTTGGATGAGTGCTTAGATGAGTCTAACTGCAGGAATGGGGTATTTGAAAATACACATGGTGGCTACCGCTGTGCATGTCACACCACAACTGAATATAGCTCAGCTCAACATCAATGTTCAAGCCCTGAGGCGATGggtgaggcgttagaaaacaagcctcacaactcctgtaccttaagtgctgct Alignment from Spaln_aa2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG ttttccaatcaaggaaaacagctgtttaacccctgcctctctctctgcagATTTGGATGAGTGCTTAGATGAGTCTAACTGCAGGAATGGGGTATTTGAAAATACACATGGTGGCTACCGCTGTGCATGTCACACCACAACTGAATATAGCTCAGCTCAACATCAATGTTCAAGCCCTGAGGCGATGGgtgaggcgttagaaaacaagcctcacaactcctgtaccttaagtgctgct Alignment from Spaln_nt2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTG-CACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG ttttccaatcaaggaaaacagctgtttaacccctgcctctctctctgcagATTTGGATGAGTGCTTAGATGAGTCTAACTGCAGGAATGGGGTATTTGAAAATACACATGGTGGCTACCGCTGTGCATGTCACACC-ACAACTGAATATAGCTCAGCTCAACATCAATGTTCAAGCCCTGAGGCGATGGgtgaggcgttagaaaacaagcctcacaactcctgtaccttaagtgctgct Alignment from Pairagon ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTG-----------------------------------------CACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG ttttccaatcaaggaaaacagctgtttaacccctgcctctctctctgcagATTTGGATGAGTGCTTAGATGAGTCTAACTGCAGGAATGGGGTATTTGAAAATACACATGGTGGCTACCGCTGTGCATGTCACACCACAACTGAATATAGCTCAGCTCAACATCAATGTTCA-----------------------------------------AGCCCTGAGGCGATGGgtgaggcgttagaaaacaagcctcacaactcctgtaccttaagtgctgct Alignment from Exonerate_protein2genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG ttttccaatcaaggaaaacagctgtttaacccctgcctctctctctgcagATTTGGATGAGTGCTTAGATGAGTCTAACTGCAGGAATGGGGTATTTGAAAATACACATGGTGGCTACCGCTGTGCATGTCACACCACAACTGAATATAGCTCAGCTCAACATCAATGTTCAAGCCCTGAGGCGATGGgtgaggcgttagaaaacaagcctcacaactcctgtaccttaagtgctgct Alignment from Exonerate_coding2genome ttttccaatcaaggaaaacagctgtttaacccctgcctctctctctgcagatttggatgagtgcttagatgagtctaactgcaggaatggggtatttgaaaatacacatggtggctaccgctgtgcatgtcacaccacaactgaatatagctcagctcaacatcaatgttcaagccctgaggcgatgggtgaggcgttagaaaacaagcctcacaactcctgtaccttaagtgctgct Alignment from GeneWise ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG ttttccaatcaaggaaaacagctgtttaacccctgcctctctctctgcagATTTGGATGAGTGCTTAGATGAGTCTAACTGCAGGAATGGGGTATTTGAAAATACACATGGTGGCTACCGCTGTGCATGTCACACCACAACTGAATATAGCTCAGCTCAACATCAATGTTCAAGCCCTGAGGCGATGGgtgaggcgttagaaaacaagcctcacaactcctgtaccttaagtgctgct #### Ltbp3_ID1273_25 --> 2 - 1 Original Alignment ACGTGGCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCA-TTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg ACGTGGTACTggtaagtagattcgaaggatgactccccctggccctgcagggTCCCAGTGCTTCACTTTACAGGGTGAGATGCTTAACTCACTTTTGGGATA-CACCCCAGTGCTACTAGGG---------CAAggtacaccaaggccggtaattgcatgcaaagcctatgataggcttaatttt Alignment from CESAR ACGTGGCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg ACGTGGTACTggtaaagagattcgaaggatgactccccctggccctgcagggTCCCAGTGCTTCACTTTACAGGGTGAGATGCTTAACTCACTTTTGGGATACACCCCAGTGCTACTAGGG---------CAAggtacaccaaggccggtaattgcatgcaaagcctatgataggctaacattt Alignment from Spaln_aa2Genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAG- ACGTGGTACTGgtaagtagattcgaaggatgactccccctggccctgcagGGTCCCAGTGCTTCACTTTACAGGGTGAGATGCTTAACTCACTTTTGGGATACACCCCAGTGCTACTAGGGCAAGgtacaccaaggccggtaattgcatgcaaagcctatgataggcttaatttt Alignment from Spaln_nt2Genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGA-GC--AATTCA-TTCTGGGACACAAGCCCCCTGCTACTGGGG-AAGTCTCCGCGAG ACGTGGTACTGgtaagtagattcgaaggatgactccccctggccctgcagGGTCCCAGTGCTTCACTTTACAGGGTGAGATGCTTAACTCACTTTTGGGATAC-ACCCCAGTGCTACTAGGGCAAGGTACACCAAGgccggtaattgcatgcaaagcctatgataggcttaatttt Alignment from Pairagon ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGA----------------------------------------------------------------------------------------------- ACGTGGTACTGgtaagtagattcgaaggatgactccccctggccctgcagGGTCCCAGTGCTTCACTTTACAGGGTGAGATGCTTAACTCACTTTTGGGATACACCCCAGTGCTACTAGGGCAAGGTACACCAAGGCCGGTAATTGCATGCAAAGCCTATGATAGGCTTAATTTT Alignment from Exonerate_protein2genome ACGTGGCACCGGG ACGTGGTACTGGTaagtagattcgaaggatgactccccctggccctgcagggtcccagtgcttcactttacagggtgagatgcttaactcacttttgggatacaccccagtgctactagggcaaggtacaccaaggccggtaattgcatgcaaagcctatgataggcttaatttt Alignment from Exonerate_coding2genome acgtggtactggtaagtagattcgaaggatgactccccctggccctgcagggtcccagtgcttcactttacagggtgagatgcttaactcacttttgggatacaccccagtgctactagggcaaggtacaccaaggccggtaattgcatgcaaagcctatgataggcttaatttt Alignment from GeneWise ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAG- ---------- ACGTGGTACTGgtaagtagattcgaaggatgactccccctggccctgcagGGTCCCAGTGCTTCACTTTACAGGGTGAGATGCTTAACTCACTTTTGGGATACACCCCAGTGCTACTAGGGCAAGgtacaccaaggccggtaattgcatgcaaagcctatgatagGCTTAATTTT #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCC-TCCCGTGCCCGCTGCGTGg gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCCTCCC-TGCCCGTCGAGTAggtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCCTCCCTGCCCGTCGAGTAggtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Spaln_aa2Genome TCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG tgcaaagcctatgataggctaacattttgtatttctttca gATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCCTCCCTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCCTCCCTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Pairagon GAAGTCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcag--------------ATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCCTCCCTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Exonerate_protein2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCCTCCCTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Exonerate_coding2genome gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagatgaagacagctcagaggaagattcagatgagtgccgttgtgtcattgggcactgtgccccgcgtcccggtggggctgtatgtgagtgtcctggtggtttcccactggatgccctccctgcccgtcgagtaggtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from GeneWise ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCCTCCCTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGC-CTTCCCCATTATTTCCCAGTAg ttcacctgatagggtcaaagtttaagtaaaatattcccttctgtttctagGTGGATCGACTCATTATCTGTGTATGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCCTTCCAC-TTATTTCCCAGTAggtaagtataagtagctcttgtacttgaagagaccctccccaccctgcctt Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg ttcacctgatagggtcaaagtttaagtaaaatattcccttctgtttctagGTGGATCGACTCATTATCTGTGTATGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCCTTCCACTTATTTCCCAGTAggtaagtataagtagctcttgtacttgaagagacccaacctccgtatctct Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC--------- ttcacctgatagggtcaaagtttaagtaaaatattcccttctgtttctagGTGGATCGACTCATTATCTGTGTATGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCCTTCCACTTATTTCCCAGTAGGTAAGTATAAGtagctcttgtacttgaagagaccctccccaccctgcctt Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgatagggtcaaagtttaagtaaaatattcccttctgtttctagGTGGATCGACTCATTATCTGTGTATGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCCTTCCACTTATTTCCCAGTAGGTaagtataagtagctcttgtacttgaagagaccctccccaccctgcctt Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgatagggtcaaagtttaagtaaaatattcccttctgtttctagGTGGATCGACTCATTATCTGTGTATGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCCTTCCACTTATTTCCCAGTAGGTaagtataagtagctcttgtacttgaagagaccctccccaccctgcctt Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA ttcacctgatagggtcaaagtttaagtaaaatattcccttctgtttctagGTGGATCGACTCATTATCTGTGTATGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCCTTCCACTTATTTCCCAGTAggtaagtataagtagctcttgtacttgaagagaccctccccaccctgcctt Alignment from Exonerate_coding2genome ttcacctgatagggtcaaagtttaagtaaaatattcccttctgtttctaggtggatcgactcattatctgtgtatgcttggagaaagaagagggcatttacagggaacatccttccacttatttcccagtaggtaagtataagtagctcttgtacttgaagagaccctccccaccctgcctt Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgatagggtcaaagtttaagtaaaatattcccttctgtttctagGTGGATCGACTCATTATCTGTGTATGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCCTTCCACTTATTTCCCAGTAGGTaagtataagtagctcttgtacttgaagagaccctccccaccctgcctt #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTG-ACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg acTGCTGGGCACAGG taagcaggtgataaaggctgataacccagactcctttttttccccctaagtTTTGGAGTGTTATTGTGGGACCTGCTGCACTG-CAAAGTGCCGTACCGGGGCATTGACTGTCTCACAGTGGTTTATGGTGTGGCTGTGAATAAATTAACATTACCTATCCCATCTACTTGTCCTGAGCCCTTTGCACAACTAATGGCTggtaatttgagattgaaggttcttgtgcgtttctagatTGCTGGGCACAGG Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg acTGCTGGGCACAGG taagcaggtgataaaggctgataacccagactcctttttttccccctaagtTTTGGAGTGTTATTGTGGGACCTGCTGCACTGCAAAGTGCCGTACCGGGGCATTGACTGTCTCACAGTGGTTTATGGTGTGGCTGTGAATAAATTAACATTACCTATCCCATCTACTTGTCCTGAGCCCTTTGCACAACTAATGGCTggtaatttgagatttcttttgtttctcctctttcagatTGCTGGGCACAGG Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG ACTGCTGGGCACAGG taagcaggtgataaaggctgataacccagactcctttttttccccctaagTTTTGGAGTGTTATTGTGGGACCTGCTGCACTGCAAAGTGCCGTACCGGGGCATTGACTGTCTCACAGTGGTTTATGGTGTGGCTGTGAATAAATTAACATTACCTATCCCATCTACTTGTCCTGAGCCCTTTGCACAACTAATGGCTGgtaatttgagattgaaggttcttgtgcgtttctagATTGCTGGGCACAGG Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG ACTGCTGGGCACAGG taagcaggtgataaaggctgataacccagactcctttttttccccctaagTTTTGGAGTGTTATTGTGGGACCTGCTGCACTGCAAAGTGCCGTACCGGGGCATTGACTGTCTCACAGTGGTTTATGGTGTGGCTGTGAATAAATTAACATTACCTATCCCATCTACTTGTCCTGAGCCCTTTGCACAACTAATGGCTGgtaatttgagattgaaggttcttgtgcgtttctagATTGCTGGGCACAGG Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG ACTGCTGGGCACAGG taagcaggtgataaaggctgataacccagactcctttttttccccctaagTTTTGGAGTGTTATTGTGGGACCTGCTGCACTGCAAAGTGCCGTACCGGGGCATTGACTGTCTCACAGTGGTTTATGGTGTGGCTGTGAATAAATTAACATTACCTATCCCATCTACTTGTCCTGAGCCCTTTGCACAACTAATGGCTGgtaatttgagattgaaggttcttgtgcgtttctagATTGCTGGGCACAGG Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG ACTGCTGGGCACAGG taagcaggtgataaaggctgataacccagactcctttttttccccctaagTTTTGGAGTGTTATTGTGGGACCTGCTGCACTGCAAAGTGCCGTACCGGGGCATTGACTGTCTCACAGTGGTTTATGGTGTGGCTGTGAATAAATTAACATTACCTATCCCATCTACTTGTCCTGAGCCCTTTGCACAACTAATGGCTGgtaatttgagattgaaggttcttgtgcgtttctagATTGCTGGGCACAGG Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG ACTGCTGGGCACAGG taagcaggtgataaaggctgataacccagactcctttttttccccctaagTTTTGGAGTGTTATTGTGGGACCTGCTGCACTGCAAAGTGCCGTACCGGGGCATTGACTGTCTCACAGTGGTTTATGGTGTGGCTGTGAATAAATTAACATTACCTATCCCATCTACTTGTCCTGAGCCCTTTGCACAACTAATGGCTGgtaatttgagattgaaggttcttgtgcgtttctagATTGCTGGGCACAGG Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG ACTGCTGGGCACAGG taagcaggtgataaaggctgataacccagactcctttttttccccctaagTTTTGGAGTGTTATTGTGGGACCTGCTGCACTGCAAAGTGCCGTACCGGGGCATTGACTGTCTCACAGTGGTTTATGGTGTGGCTGTGAATAAATTAACATTACCTATCCCATCTACTTGTCCTGAGCCCTTTGCACAACTAATGGCTGgtaatttgagattgaaggttcttgtgcgtttctagATTGCTGGGCACAGG #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctacattgtgagttgatggctatgtactagccagatgttgttcccctcagGAACTCCTTAGTCAAGAGCGAAGAAT-GACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGCTGGCGCAATGGGAGCTAGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCGAACTGAGCCAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTAggtaactgctgtgactccaagcagtggcattaaggattactgctttgcaaa Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctacattgtgagttgatggctatgtactagccagatgttgttcccctcagGAACTCCTTAGTCAAGAGCGAAGAATGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGCTGGCGCAATGGGAGCTAGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCGAACTGAGCCAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTAggtaactgctgtgactccaagcagtggcattaaggattactgctttgcaaa Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctacattgtgagttgatggctatgtactagccagatgttgttcccctcagGAACTCCTTAGTCAAGAGCGAAGAATGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGCTGGCGCAATGGGAGCTAGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCGAACTGAGCCAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTAGgtaactgctgtgactccaagcagtggcattaaggattactgctttgcaaa Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGC------GAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctacattgtgagttgatggctatgtactagccagatgttgttcccctcagGAACTCCTTAGTCAAGAGCGAAGAA-TGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGCTGGCGCAATGGGAGCTAGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCGAACTGAGCCAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTAGgtaactgctgtgactccaagcagtggcattaaggattactgctttgcaaa Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGC------GACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctacattgtgagttgatggctatgtactagccagatgttgttcccctcagGAACTCCTTAGTCAAGAGCGAAGAATGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGCTGGCGCAATGGGAGCTAGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCGAACTGAGCCAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTAGgtaactgctgtgactccaagcagtggcattaaggattactgctttgcaaa Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctacattgtgagttgatggctatgtactagccagatgttgttcccctcagGAACTCCTTAGTCAAGAGCGAAGAATGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGCTGGCGCAATGGGAGCTAGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCGAACTGAGCCAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTAGgtaactgctgtgactccaagcagtggcattaaggattactgctttgcaaa Alignment from Exonerate_coding2genome ctacattgtgagttgatggctatgtactagccagatgttgttcccctcaggaactccttagtcaagagcgaagaatgacatgggctgcatgtgtgcagtggtctcaggcagaacagctccagctgagccgccatgagcatttgctggcgcaatgggagctagaggtttttgaacaactgcctgcactgacattactactccagcaggtggatcgagaacaggcacatgtacaccgacggcaggccacctccgaactgagccagctccgagccagagatagtgaagaacgggtcagcatgactttaggtaactgctgtgactccaagcagtggcattaaggattactgctttgcaaa Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctacattgtgagttgatggctatgtactagccagatgttgttcccctcagGAACTCCTTAGTCAAGAGCGAAGAATGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAACAGCTCCAGCTGAGCCGCCATGAGCATTTGCTGGCGCAATGGGAGCTAGAGGTTTTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACACCGACGGCAGGCCACCTCCGAACTGAGCCAGCTCCGAGCCAGAGATAGTGAAGAACGGGTCAGCATGACTTTAGgtaactgctgtgactccaagcagtggcattaaggattactgctttgcaaa #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCC-AGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag gactaagtgcactactttagaggcaataattctcctttttcttcatgaagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTC-TGGCCAGGCTTCCATTCAGAATGGAAAAGACaggtataataattaactctggttcctttcccaaagaagtatgctgtgcttta Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag gactaagtgcactactttagaggcaataattctcctttttcttcatgaagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTGGCCAGGCTTCCATTCAGAATGGAAAAGACaggtataataattaactctggttcctttcccaaagaagtatgctgtgcttta Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaataattctcctttttcttcatgaagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtataataattaactctggttcctttcccaaagaagtatgctgtgcttta Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaataattctcctttttcttcatgaagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtataataattaactctggttcctttcccaaagaagtatgctgtgcttta Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaataattctcctttttcttcatgaagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtataataattaactctggttcctttcccaaagaagtatgctgtgcttta Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaataattctcctttttcttcatgaagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtataataattaactctggttcctttcccaaagaagtatgctgtgcttta Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaataattctcctttttcttcatgaagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtataataattaactctggttcctttcccaaagaagtatgctgtgcttta Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaataattctcctttttcttcatgaagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtataataattaactctggttcctttcccaaagaagtatgctgtgcttta #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGG-GTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG attctctgcaacaacttatatgtcagatcaatttacattctctattgtagGAGCTACGGGAACGGCGTGTTGA-GGGGAAATACCGTATTCCGTTCTACATATCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtaacagacctgagctaacagtcaggaaaggagagcaatgtactaattaa Alignment from CESAR GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG attctctgcaacaacttatatgtcagatcaatttacattctctattgtagGAGCTACGGGAACGGCGTGTTGAGGGGAAATACCGTATTCCGTTCTACATATCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtaacagacctgagctaacagtcaggaaaggagagcaatgtactaattaa Alignment from Spaln_aa2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG attctctgcaacaacttatatgtcagatcaatttacattctctattgtagGAGCTACGGGAACGGCGTGTTGAGGGGAAATACCGTATTCCGTTCTACATATCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtaacagacctgagctaacagtcaggaaaggagagcaatgtactaattaa Alignment from Spaln_nt2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG attctctgcaacaacttatatgtcagatcaatttacattctctattgtagGAGCTACGGGAACGGCGTGTTGAGGGGAAATACCGTATTCCGTTCTACATATCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtaacagacctgagctaacagtcaggaaaggagagcaatgtactaattaa Alignment from Pairagon GAGCTGCGGGAACGG-GTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG attctctgcaacaacttatatgtcagatcaatttacattctctattgtagGAGCTACGGGAACGGCGTGTTGA-GGGGAAATACCGTATTCCGTTCTACATATCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtaacagacctgagctaacagtcaggaaaggagagcaatgtactaattaa Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG attctctgcaacaacttatatgtcagatcaatttacattctctattgtagGAGCTACGGGAACGGCGTGTTGAGGGGAAATACCGTATTCCGTTCTACATATCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtaacagacctgagctaacagtcaggaaaggagagcaatgtactaattaa Alignment from Exonerate_coding2genome attctctgcaacaacttatatgtcagatcaatttacattctctattgtaggagctacgggaacggcgtgttgaggggaaataccgtattccgttctacatatccactgactgtgaaaatctacttaagaaattccttatacttaatcctagtaaaagaggcactctagatgtaacagacctgagctaacagtcaggaaaggagagcaatgtactaattaa Alignment from GeneWise GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG attctctgcaacaacttatatgtcagatcaatttacattctctattgtagGAGCTACGGGAACGGCGTGTTGAGGGGAAATACCGTATTCCGTTCTACATATCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtaacagacctgagctaacagtcaggaaaggagagcaatgtactaattaa #### Mark2_ID2116_5 --> 2 - 1 Original Alignment ttAAGTTGTTTGAAGTGATCGAGACT-GAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg ctacttctagctggtatcattcaactccggacaagggccttctctttcagtcAAGTGGTTTGATATC------GTTCGAGA-GACACTTTACTTAGTAATGGAGTATGCCAGTGGTggtaagactcaagttgctcccattgtctgttggtgcttgtctatgtacaga Alignment from CESAR ttAAGTTGTTTGAAGTGATC---GAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg ctacttctagctggtatcattcaactccggacaagggccttctctttcagtcAAGTGGTTTGATATCGTTCGAGAG---------ACACTTTACTTAGTAATGGAGTATGCCAGTGGTggtaagactcaagttgctcccattgtctgttggtgcttgtctatgtacaga Alignment from Spaln_aa2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG ctacttctagctggtatcattcaactccggacaagggccttctctttcagTCAAGTGGTTTGATATCGTT------CGAGAGACACTTTACTTAGTAATGGAGTATGCCAGTGGTGgtaagactcaagttgctcccattgtctgttggtgcttgtctatgtacaga Alignment from Spaln_nt2Genome TTAAGTTGTTTGAAGT-GATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG ctacttctagctggtatcattcaactccggacaagggccttctctttcagTCAAGTGGTTTGATATCGTTCGAG-------AGACACTTTACTTAGTAATGGAGTATGCCAGTGGTGgtaagactcaagttgctcccattgtctgttggtgcttgtctatgtacaga Alignment from Pairagon TTAAGTTGTTTGA---------AGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG ctacttctagctggtatcattcaactccggacaagggccttctctttcagTCAAGTGGTTTGATATCGTTCGAG---------------AGACACTTTACTTAGTAATGGAGTATGCCAGTGGTGgtaagactcaagttgctcccattgtctgttggtgcttgtctatgtacaga Alignment from Exonerate_protein2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG ctacttctagctggtatcattcaactccggacaagggccttctctttcagTCAAGTGGTTTGATATCGTT------CGAGAGACACTTTACTTAGTAATGGAGTATGCCAGTGGTGgtaagactcaagttgctcccattgtctgttggtgcttgtctatgtacaga Alignment from Exonerate_coding2genome ctacttctagctggtatcattcaactccggacaagggccttctctttcagtcaagtggtttgatatcgttcgagagacactttacttagtaatggagtatgccagtggtggtaagactcaagttgctcccattgtctgttggtgcttgtctatgtacaga Alignment from GeneWise TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG ctacttctagctggtatcattcaactccggacaagggccttctctttcagTCAAGTGGTTTGATATCGTTCGA------GAGACACTTTACTTAGTAATGGAGTATGCCAGTGGTGgtaagactcaagttgctcccattgtctgttggtgcttgtctatgtacaga #### Mrpl16_ID3289_2 --> 2 - 1 Original Alignment atTCTTGGGCAGCCCTTCCCACCAGTGCT-GGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAa aaggggtgtgagcacctatataaacctcaagtttctgtctgtctttgaagatGCT---GCAACTCTTCCCACCAGTGATCGGTC-AAAAACTCTTTTCCCTGTTCCAACATATGAAagtactatgtaccctgaggattactacataactccagctatgcctcaaatg Alignment from CESAR atTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAa aaggggtgtgagcacctatataaacctcaagtttctgtctgtctttgaagatGCT---GCAACTCTTCCCACCAGTGATCGGTCAAAAACTCTTTTCCCTGTTCCAACATATGAAagtactatgtaccctgaggattactacataactccagctatgcctcaaatg Alignment from Spaln_aa2Genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA aaggggtgtgagcacctatataaacctcaagtttctgtctgtctttgaagATGCT---GCAACTCTTCCCACCAGTGATCGGTCAAAAACTCTTTTCCCTGTTCCAACATATGAAAgtactatgtaccctgaggattactacataactccagctatgcctcaaatg Alignment from Spaln_nt2Genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA aaggggtgtgagcacctatataaacctcaagtttctgtctgtctttgaagATGCT---GCAACTCTTCCCACCAGTGATCGGTCAAAAACTCTTTTCCCTGTTCCAACATATGAAAgtactatgtaccctgaggattactacataactccagctatgcctcaaatg Alignment from Pairagon ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA aaggggtgtgagcacctatataaacctcaagtttctgtctgtctttgaagATGCT---GCAACTCTTCCCACCAGTGATCGGTCAAAAACTCTTTTCCCTGTTCCAACATATGAAAgtactatgtaccctgaggattactacataactccagctatgcctcaaatg Alignment from Exonerate_protein2genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA aaggggtgtgagcacctatataaacctcaagtttctgtctgtctttgAAGATGCTGCAACTCTTCCCACCAGTGATCGGTCAAAAACTCTTTTCCCTGTTCCAACATATGAAAgtactatgtaccctgaggattactacataactccagctatgcctcaaatg Alignment from Exonerate_coding2genome GCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA aaggggtgtgagcacctatataaacctcaagtttctgtctgtctttgaagatgctGCAACTCTTCCCACCAGTGATCGGTCAAAAACTCTTTTCCCTGTTCCAACATATGAAAgtactatgtaccctgaggattactacataactccagctatgcctcaaatg Alignment from GeneWise ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA aaggggtgtgagcacctatataaacctcaagtttctgtctgtctttgaagATGCT---GCAACTCTTCCCACCAGTGATCGGTCAAAAACTCTTTTCCCTGTTCCAACATATGAAAgtactatgtaccctgaggattactacataactccagctatgcctcaaatg #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGA-GTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ggcacaaaacttagaactagcttaatacgtttgactgactttgtccccagaGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGACGTTGTGG-ATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACtgtatgtccagctgaatgagggcaggggtatcaagtatttaatatgtcata Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ggcacaaaacttagaactagcttaatacgtttgactgactttgtccccagaGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGACGTTGTGGATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACtgtatgtccagctgaatgagggcaggggtatcaagtatttaatatgtcata Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcttaatacgtttgactgactttgtccccagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGACGTTGTGGATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtatgtccagctgaatgagggcaggggtatcaagtatttaatatgtcata Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcttaatacgtttgactgactttgtccccagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGACGTTGTGGATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtatgtccagctgaatgagggcaggggtatcaagtatttaatatgtcata Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGT--ATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcttaatacgtttgactgactttgtccccagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGA--CGTTGTGGATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtatgtccagctgaatgagggcaggggtatcaagtatttaatatgtcata Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcttaatacgtttgactgactttgtccccagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGACGTTGTGGATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtatgtccagctgaatgagggcaggggtatcaagtatttaatatgtcata Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcttaatacgtttgactgactttgtccccagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGACGTTGTGGATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtatgtccagctgaatgagggcaggggtatcaagtatttaatatgtcata Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcttaatacgtttgactgactttgtccccagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGACGTTGTGGATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtatgtccagctgaatgagggcaggggtatcaagtatttaatatgtcata #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCA-GCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attgaggtctgttcaggacactggtagcgagttcggttttatccctgcagtGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCACGCTCCAC-AAAGCAGACATGGCGGACTTTTCTGAAAAAAGAACTTGAGTTCCTGGGTgtattattgttggcttatttgtcaatgtcaaaagcattgccttctccaaa Alignment from CESAR tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attgaggtctgttcaggacactggtagcgagttcggttttatccctgcagtGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCACGCTCCACAAAGCAGACATGGCGGACTTTTCTGAAAAAAGAACTTGAGTTCCTGGGTgtattattgttggcttatttgtcaatgtcaaaagcattgccttctccaaa Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attgaggtctgttcaggacactggtagcgagttcggttttatccctgcagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCACGCTCCACAAAGCAGACATGGCGGACTTTTCTGAAAAAAGAACTTGAGTTCCTGGGTgtattattgttggcttatttgtcaatgtcaaaagcattgccttctccaaa Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attgaggtctgttcaggacactggtagcgagttcggttttatccctgcagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCACGCTCCACAAAGCAGACATGGCGGACTTTTCTGAAAAAAGAACTTGAGTTCCTGGGTgtattattgttggcttatttgtcaatgtcaaaagcattgccttctccaaa Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attgaggtctgttcaggacactggtagcgagttcggttttatccctgcagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCACGCTCCACAAAGCAGACATGGCGGACTTTTCTGAAAAAAGAACTTGAGTTCCTGGGTgtattattgttggcttatttgtcaatgtcaaaagcattgccttctccaaa Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attgaggtctgttcaggacactggtagcgagttcggttttatccctgcagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCACGCTCCACAAAGCAGACATGGCGGACTTTTCTGAAAAAAGAACTTGAGTTCCTGGGTgtattattgttggcttatttgtcaatgtcaaaagcattgccttctccaaa Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attgaggtctgttcaggacactggtagcgagttcggttttatccctgcagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCACGCTCCACAAAGCAGACATGGCGGACTTTTCTGAAAAAAGAACTTGAGTTCCTGGGTgtattattgttggcttatttgtcaatgtcaaaagcattgccttctccaaa Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attgaggtctgttcaggacactggtagcgagttcggttttatccctgcagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCACGCTCCACAAAGCAGACATGGCGGACTTTTCTGAAAAAAGAACTTGAGTTCCTGGGTgtattattgttggcttatttgtcaatgtcaaaagcattgccttctccaaa #### Mta2_ID2532_5 --> 1 - 0 Original Alignment gGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTA-AACCAGTATCTAGACAAGGAG agtgtcttgtgtctctatatcctaagttctcttgtctttgctcaccacaggGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTACAATCAGT-TCTAGACAAGGAGgtgggtagccatctggagaacagggtgggtggatattgaatgtaggaggc Alignment from CESAR gGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG agtgtcttgtgtctctatatcctaagttctcttgtctttgctcaccacaggGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTACAATCAGTTCTAGACAAGGAGgtgggtagccatctggagaacagggtgggtggatattgaatgtaggaggc Alignment from Spaln_aa2Genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG agtgtcttgtgtctctatatcctaagttctcttgtctttgctcaccacagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTACAATCAGTTCTAGACAAGGAGgtgggtagccatctggagaacagggtgggtggatattgaatgtaggaggc Alignment from Spaln_nt2Genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTA-AACCAGTATCTAGACAAGGAG agtgtcttgtgtctctatatcctaagttctcttgtctttgctcaccacagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTACAATCAGT-TCTAGACAAGGAGgtgggtagccatctggagaacagggtgggtggatattgaatgtaggaggc Alignment from Pairagon GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTA-AACCAGTATCTAGACAAGGAG agtgtcttgtgtctctatatcctaagttctcttgtctttgctcaccacagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTACAATCAGT-TCTAGACAAGGAGgtgggtagccatctggagaacagggtgggtggatattgaatgtaggaggc Alignment from Exonerate_protein2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG agtgtcttgtgtctctatatcctaagttctcttgtctttgctcaccacagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTACAATCAGTTCTAGACAAGGAGgtgggtagccatctggagaacagggtgggtggatattgaatgtaggaggc Alignment from Exonerate_coding2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG agtgtcttgtgtctctatatcctaagttctcttgtctttgctcaccacagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTACAATCAGTTCTAGACAAGGAGgtgggtagccatctggagaacagggtgggtggatattgaatgtaggaggc Alignment from GeneWise GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG agtgtcttgtgtctctatatcctaagttctcttgtctttgctcaccacagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTACAATCAGTTCTAGACAAGGAGgtgggtagccatctggagaacagggtgggtggatattgaatgtaggaggc #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAG-ATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg gtgcaacttctacagcccaaagaggttctgccagcccttatcatccctaggaGAGTCAGATAACAGAAACCAACAGATGATGGAGCATGAAAG-CTGGGACCCAGGAAATCCACTTACAGACCAGCAGAATGACCAGTTCCTAATTGTGGCTcggtactgaaaggttaggaggacacataggtgcactacatcttattctggat Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg gtgcaacttctacagcccaaagaggttctgccagcccttatcatccctaggaGAGTCAGATAACAGAAACCAACAGATGATGGAGCATGAAAGCTGGGACCCAGGAAATCCACTTACAGACCAGCAGAATGACCAGTTCCTAATTGTGGCTcggtactgaaaggttaggaggacacataggtgcactacatcttattctggat Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtgcaacttctacagcccaaagaggttctgccagcccttatcatccctagGAGAGTCAGATAACAGAAACCAACAGATGATGGAGCATGAAAGCTGGGACCCAGGAAATCCACTTACAGACCAGCAGAATGACCAGTTCCTAATTGTGGCTCGgtactgaaaggttaggaggacacataggtgcactacatcttattctggat Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtgcaacttctacagcccaaagaggttctgccagcccttatcatccctagGAGAGTCAGATAACAGAAACCAACAGATGATGGAGCATGAAAGCTGGGACCCAGGAAATCCACTTACAGACCAGCAGAATGACCAGTTCCTAATTGTGGCTCGgtactgaaaggttaggaggacacataggtgcactacatcttattctggat Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAG-ATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtgcaacttctacagcccaaagaggttctgccagcccttatcatccctagGAGAGTCAGATAACAGAAACCAACAGATGATGGAGCATGAAAG-CTGGGACCCAGGAAATCCACTTACAGACCAGCAGAATGACCAGTTCCTAATTGTGGCTCGgtactgaaaggttaggaggacacataggtgcactacatcttattctggat Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtgcaacttctacagcccaaagaggttctgccagcccttatcatccctagGAGAGTCAGATAACAGAAACCAACAGATGATGGAGCATGAAAGCTGGGACCCAGGAAATCCACTTACAGACCAGCAGAATGACCAGTTCCTAATTGTGGCTCGgtactgaaaggttaggaggacacataggtgcactacatcttattctggat Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtgcaacttctacagcccaaagaggttctgccagcccttatcatccctagGAGAGTCAGATAACAGAAACCAACAGATGATGGAGCATGAAAGCTGGGACCCAGGAAATCCACTTACAGACCAGCAGAATGACCAGTTCCTAATTGTGGCTCGgtactgaaaggttaggaggacacataggtgcactacatcttattctggat Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtgcaacttctacagcccaaagaggttctgccagcccttatcatccctagGAGAGTCAGATAACAGAAACCAACAGATGATGGAGCATGAAAGCTGGGACCCAGGAAATCCACTTACAGACCAGCAGAATGACCAGTTCCTAATTGTGGCTCGgtactgaaaggttaggaggacacataggtgcactacatcttattctggat #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCG-GTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagcacatcaaaactctcaatttttttttttttttttttaagTTTCACGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACCCTCGTACCACAGGGAGGTCCACGTTCTTTGCC-AGATGAGATGGGGGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCACCAAGACTTTgtgagtgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagcacatcaaaactctcaatttttttttttttttttttaagTTTCACGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACCCTCGTACCACAGGGAGGTCCACGTTCTTTGCCAGATGAGATGGGGGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCACCAAGACTTTgtgagtgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagcacatcaaaactctcaatttttttttttttttttttaagTTTCACGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACCCTCGTACCACAGGGAGGTCCACGTTCTTTGCCAGATGAGATGGGGGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCACCAAGACTTTgtgagtgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagcacatcaaaactctcaatttttttttttttttttttaagTTTCACGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACCCTCGTACCACAGGGAGGTCCACGTTCTTTGCCAGATGAGATGGGGGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCACCAAGACTTTgtgagtgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCC-------------GGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagcacatcaaaactctcaatttttttttttttttttttaagTTTCACGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACCCTCGTACCACAGGGAGGTCCACGTTCTTTGCCAG-------------ATGAGATGGGGGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCACCAAGACTTTgtgagtgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagcacatcaaaactctcaatttttttttttttttttttaagTTTCACGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACCCTCGTACCACAGGGAGGTCCACGTTCTTTGCCAGATGAGATGGGGGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCACCAAGACTTTgtgagtgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Exonerate_coding2genome AGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTGTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT AGGGTAAAAAGCACATCAAAACTCTCAATTTTTTTTTTTTTTTTTTTAAGTTTCACGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACCCTCGTACCACAGGGAGGTCCACGTTCTTTGCCAGATGAGATGGGGGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCACCAAGACTTTgtgagtgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagcacatcaaaactctcaatttttttttttttttttttaagTTTCACGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACCCTCGTACCACAGGGAGGTCCACGTTCTTTGCCAGATGAGATGGGGGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCACCAAGACTTTgtgagtgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAA-CAGGTCTACATCCCCACTta gcactcatgggatgactccaagtttggcctttattgcactttttgctcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATATTGAAACCAGG-GTATATCCCCACCtagtaagtgccattccacaattagaacacctaatatggtaacctaatgactg Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTta gcactcatgggatgactccaagtttggcctttattgcactttttgctcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATATTGAAACCAGGGTATATCCCCACCtagtaagtgccattccacaattagaacacctaatatggtaacctaatgactg Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gcactcatgggatgactccaagtttggcctttattgcactttttgctcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATATTGAAACCAGGGTATATCCCCACCTAgtaagtgccattccacaattagaacacctaatatggtaacctaatgactg Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gcactcatgggatgactccaagtttggcctttattgcactttttgctcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATATTGAAACCAGGGTATATCCCCACCTAgtaagtgccattccacaattagaacacctaatatggtaacctaatgactg Alignment from Pairagon AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gcactcatgggatgactccaagtttggcctttattgcactttttgctcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATATTGAAACCAGGGTATATCCCCACCTAgtaagtgccattccacaattagaacacctaatatggtaacctaatgactg Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gcactcatgggatgactccaagtttggcctttattgcactttttgctcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATATTGAAACCAGGGTATATCCCCACCTAgtaagtgccattccacaattagaacacctaatatggtaacctaatgactg Alignment from Exonerate_coding2genome gcactcatgggatgactccaagtttggcctttattgcactttttgctcagaaaaggctaaaagctgccgaagcagacagtatattgaaaccagggtatatccccacctagtaagtgccattccacaattagaacacctaatatggtaacctaatgactg Alignment from GeneWise AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA gcactcatgggatgactccaagtttggcctttattgcactttttgctcagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATATTGAAACCAGGGTATATCCCCACCTAgtaagtgccattccacaattagaacacctaatatggtaacctaatgactg #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTG-AAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactgtaatacagtaattcttttatctctgatttcactcttcccagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGCAAAACTC-TACGCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaagggtgagtgtgtctggagcgaccataagaactgaaggtaaggaaga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactgtaatacagtaattcttttatctctgatttcactcttcccagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGCAAAACTCTACGCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaagggtgagtgtgtctggagcgaccataagaactgaaggtaaggaaga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactgtaatacagtaattcttttatctctgatttcactcttcccagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGCAAAACTCTACGCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaagggtgagtgtgtctggagcgaccataagaactgaaggtaaggaaga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactgtaatacagtaattcttttatctctgatttcactcttcccagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGCAAAACTCTACGCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaagggtgagtgtgtctggagcgaccataagaactgaaggtaaggaaga Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactgtaatacagtaattcttttatctctgatttcactcttcccagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGCAAAACTCTACGCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaagggtgagtgtgtctggagcgaccataagaactgaaggtaaggaaga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactgtaatacagtaattcttttatctctgatttcactcttcccagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGCAAAACTCTACGCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaagggtgagtgtgtctggagcgaccataagaactgaaggtaaggaaga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactgtaatacagtaattcttttatctctgatttcactcttcccagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGCAAAACTCTACGCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaagggtgagtgtgtctggagcgaccataagaactgaaggtaaggaaga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA gaatcactgtaatacagtaattcttttatctctgatttcactcttcccagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAATATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAGACATATGGAGGCTTGCAAAACTCTACGCAGCTAGAAGGAGCAGCTCGGATAACAACCgtaagggtgagtgtgtctggagcgaccataagaactgaaggtaaggaaga #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAA-AAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagcCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAACAAAAGGCCCC-CAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagcCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAACAAAAGGCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAACAAAAGGCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAACAAAAGGCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAACAAAAGGCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAACAAAAGGCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Exonerate_coding2genome ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagccatgctggtagtgaatttagtaggactggcagtgtccctcacaaacaaaaggcccccaggcttgccaataaggcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGTCATCGCCAGCGG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAACAAAAGGCCCCCAGGCTTGCCAATAAG---------GCAAgtcggtccaacagccacatacacttctacccattcat #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAA-GTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAAT---GGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagggATCCTTGCGCGGGAGCGTGAAGGTGA-TCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagggATCCTTGCGCGGGAGCGTGAAGGTGATCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGCGTGAAGGTGATCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAA-GTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAA---TGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGCGTGAAGGTGAT-CTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Pairagon GTGTCATCGCCCAGGAA-GTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGC---CAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGCGTGAAGGTGAT-CTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGCGTGAAGGTGATCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGCGTGAAGGTGATCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGCGTGAAGGTGATCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGAT-ACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aaataattgactcaccatgattgagataatacgtcttttgttgctttcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTATGGCAACGGGCACAGCTA---GATCACAGTTTTTC-CCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGGAACATAAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaacatgtgcagagatgcacatgcatacatgggtttggtggcatagttg Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aaataattgactcaccatgattgagataatacgtcttttgttgctttcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTATGGCAACGGGCACAGCTA---GATCACAGTTTTTCCCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGGAACATAAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaacatgtgcagagatgcacatgcatacatgggtttggtggcatagttg Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aaataattgactcaccatgattgagataatacgtcttttgttgctttcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTATGGCAACGGGCACAGCTA---GATCACAGTTTTTCCCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGGAACATAAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaacatgtgcagagatgcacatgcatacatgggtttggtggcatagttg Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGAT-ACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aaataattgactcaccatgattgagataatacgtcttttgttgctttcagGCCTCTAACCCAGGGCCATT---GAGTGATAGTGATGTGTTATGGCAACGGGCACAGCT---AGATCACAGTTTTTC-CCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGGAACATAAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaacatgtgcagagatgcacatgcatacatgggtttggtggcatagttg Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCA--------------CCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aaataattgactcaccatgattgagataatacgtcttttgttgctttcagGCCTCTAACCCAGGGCCATT---GAGTGATAGTGATGTGTTATGGCAACGGGCACAGCT-----------------AGATCACAGTTTTTCCCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGGAACATAAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaacatgtgcagagatgcacatgcatacatgggtttggtggcatagttg Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aaataattgactcaccatgattgagataatacgtcttttgttgctttcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTATGGCAACGGGCACAGCTA---GATCACAGTTTTTCCCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGGAACATAAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaacatgtgcagagatgcacatgcatacatgggtttggtggcatagttg Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aaataattgactcaccatgattgagataatacgtcttttgttgctttcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTATGGCAACGGGCACAGCTA---GATCACAGTTTTTCCCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGGAACATAAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaacatgtgcagagatgcacatgcatacatgggtttggtggcatagttg Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aaataattgactcaccatgattgagataatacgtcttttgttgctttcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTATGGCAACGGGCACAGCTA---GATCACAGTTTTTCCCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGGAACATAAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaacatgtgcagagatgcacatgcatacatgggtttggtggcatagttg #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACA-CTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ttgagaatggttccacggatacagatagttcttctgccttctccccctaggTATTTCATGCTGGTGGTTGCCCTCCAAGCACATGCACAGAACCAAAACTACACCCCTGGCAG-CCAAATTTCAGAGCGTATCATTGTACGGgtaattgccatacctacaccctagcagtccagggtccaaggcatgtcatt Alignment from CESAR gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ttgagaatggttccacggatacagatagttcttctgccttctccccctaggTATTTCATGCTGGTGGTTGCCCTCCAAGCACATGCACAGAACCAAAACTACACCCCTGGCAGCCAAATTTCAGAGCGTATCATTGTACGGgtaattgccatacctacaccctagcagtccagggtccaaggcatgtcatt Alignment from Spaln_aa2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ttgagaatggttccacggatacagatagttcttctgccttctccccctagGTATTTCATGCTGGTGGTTGCCCTCCAAGCACATGCACAGAACCAAAACTACACCCCTGGCAGCCAAATTTCAGAGCGTATCATTGTACGGgtaattgccatacctacaccctagcagtccagggtccaaggcatgtcatt Alignment from Spaln_nt2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ttgagaatggttccacggatacagatagttcttctgccttctccccctagGTATTTCATGCTGGTGGTTGCCCTCCAAGCACATGCACAGAACCAAAACTACACCCCTGGCAGCCAAATTTCAGAGCGTATCATTGTACGGgtaattgccatacctacaccctagcagtccagggtccaaggcatgtcatt Alignment from Pairagon GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACA-CACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ttgagaatggttccacggatacagatagttcttctgccttctccccctagGTATTTCATGCTGGTGGTTGCCCTCCAAGCACATGCACAGAACCAAAACTACACCCCTGGCAG-CCAAATTTCAGAGCGTATCATTGTACGGgtaattgccatacctacaccctagcagtccagggtccaaggcatgtcatt Alignment from Exonerate_protein2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ttgagaatggttccacggatacagatagttcttctgccttctccccctagGTATTTCATGCTGGTGGTTGCCCTCCAAGCACATGCACAGAACCAAAACTACACCCCTGGCAGCCAAATTTCAGAGCGTATCATTGTACGGgtaattgccatacctacaccctagcagtccagggtccaaggcatgtcatt Alignment from Exonerate_coding2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ttgagaatggttccacggatacagatagttcttctgccttctccccctagGTATTTCATGCTGGTGGTTGCCCTCCAAGCACATGCACAGAACCAAAACTACACCCCTGGCAGCCAAATTTCAGAGCGTATCATTGTACGGgtaattgccatacctacaccctagcagtccagggtccaaggcatgtcatt Alignment from GeneWise GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ttgagaatggttccacggatacagatagttcttctgccttctccccctagGTATTTCATGCTGGTGGTTGCCCTCCAAGCACATGCACAGAACCAAAACTACACCCCTGGCAGCCAAATTTCAGAGCGTATCATTGTACGGgtaattgccatacctacaccctagcagtccagggtccaaggcatgtcatt #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAG-TTCTTCCGAGAGGCACTGca gtaaagagactgaccatgtctgtatgtgggccgtggttgtttcctttcagcACACAGAGAAAGAAAGTCATGTTAACTGTGTTTAAACACAATCATGATGCCTACCAGCTTTT-CCATGAGACACTTcagtgagtaagagaagttagtcatctcaaaacttagttaggacacaaagggc Alignment from CESAR cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca gtaaagagactgaccatgtctgtatgtgggccgtggttgtttcctttcagcACACAGAGAAAGAAAGTCATGTTAACTGTGTTTAAACACAATCATGATGCCTACCAGCTTTTCCATGAGACACTTcagtgagtaagagaagttagtcatctcaaaacttagttaggacacaaagggc Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA gtaaagagactgaccatgtctgtatgtgggccgtggttgtttcctttcagCACACAGAGAAAGAAAGTCATGTTAACTGTGTTTAAACACAATCATGATGCCTACCAGCTTTTCCATGAGACACTTCAgtgagtaagagaagttagtcatctcaaaacttagttaggacacaaagggc Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA gtaaagagactgaccatgtctgtatgtgggccgtggttgtttcctttcagCACACAGAGAAAGAAAGTCATGTTAACTGTGTTTAAACACAATCATGATGCCTACCAGCTTTTCCATGAGACACTTCAgtgagtaagagaagttagtcatctcaaaacttagttaggacacaaagggc Alignment from Pairagon CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA gtaaagagactgaccatgtctgtatgtgggccgtggttgtttcctttcagCACACAGAGAAAGAAAGTCATGTTAACTGTGTTTAAACACAATCATGATGCCTACCAGCTTTTCCATGAGACACTTCAgtgagtaagagaagttagtcatctcaaaacttagttaggacacaaagggc Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA gtaaagagactgaccatgtctgtatgtgggccgtggttgtttcctttcagCACACAGAGAAAGAAAGTCATGTTAACTGTGTTTAAACACAATCATGATGCCTACCAGCTTTTCCATGAGACACTTCAgtgagtaagagaagttagtcatctcaaaacttagttaggacacaaagggc Alignment from Exonerate_coding2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA gtaaagagactgaccatgtctgtatgtgggccgtggttgtttcctttcagCACACAGAGAAAGAAAGTCATGTTAACTGTGTTTAAACACAATCATGATGCCTACCAGCTTTTCCATGAGACACTTCAgtgagtaagagaagttagtcatctcaaaacttagttaggacacaaagggc Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA gtaaagagactgaccatgtctgtatgtgggccgtggttgtttcctttcagCACACAGAGAAAGAAAGTCATGTTAACTGTGTTTAAACACAATCATGATGCCTACCAGCTTTTCCATGAGACACTTCAgtgagtaagagaagttagtcatctcaaaacttagttaggacacaaagggc #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAA-ATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg atcaatcccagagagcagtctacttaaataataatgttttctgactcaaggTACGAACAAAGTGAATGGGGCTGGAAGGACCAACAAAAACGAGAGGAGCATGACTG-TGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAATGTGGGGATGAGGTTTTATATtggtaagggatttttgcctgtgctgtaggaggttatgccactgattgagtag Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg atcaatcccagagagcagtctacttaaataataatgttttctgactcaaggTACGAACAAAGTGAATGGGGCTGGAAGGACCAACAAAAACGAGAGGAGCATGACTGTGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAATGTGGGGATGAGGTTTTATATtggtaagggatttttgcctgtgctgtaggaggttatgccactgattgagtag Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaatcccagagagcagtctacttaaataataatgttttctgactcaagGTACGAACAAAGTGAATGGGGCTGGAAGGACCAACAAAAACGAGAGGAGCATGACTGTGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAATGTGGGGATGAGGTTTTATATTGgtaagggatttttgcctgtgctgtaggaggttatgccactgattgagtag Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAA-ATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaatcccagagagcagtctacttaaataataatgttttctgactcaagGTACGAACAAAGTGAATGGGGCTGGAAGGACCAACAAAAACGAGAGGAGCATGACTG-TGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAATGTGGGGATGAGGTTTTATATTGgtaagggatttttgcctgtgctgtaggaggttatgccactgattgagtag Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAA-ATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaatcccagagagcagtctacttaaataataatgttttctgactcaagGTACGAACAAAGTGAATGGGGCTGGAAGGACCAACAAAAACGAGAGGAGCATGACTG-TGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAATGTGGGGATGAGGTTTTATATTGgtaagggatttttgcctgtgctgtaggaggttatgccactgattgagtag Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaatcccagagagcagtctacttaaataataatgttttctgactcaagGTACGAACAAAGTGAATGGGGCTGGAAGGACCAACAAAAACGAGAGGAGCATGACTGTGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAATGTGGGGATGAGGTTTTATATTGgtaagggatttttgcctgtgctgtaggaggttatgccactgattgagtag Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaatcccagagagcagtctacttaaataataatgttttctgactcaagGTACGAACAAAGTGAATGGGGCTGGAAGGACCAACAAAAACGAGAGGAGCATGACTGTGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAATGTGGGGATGAGGTTTTATATTGgtaagggatttttgcctgtgctgtaggaggttatgccactgattgagtag Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atcaatcccagagagcagtctacttaaataataatgttttctgactcaagGTACGAACAAAGTGAATGGGGCTGGAAGGACCAACAAAAACGAGAGGAGCATGACTGTGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAATGTGGGGATGAGGTTTTATATTGgtaagggatttttgcctgtgctgtaggaggttatgccactgattgagtag #### Naaladl1_ID1444_3 --> 2 - 0 Original Alignment tgGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCT-TATGCTGCCTACGCTCCCCCTGGGACTCCAAAG gagaatcagaagtcactaggcagcacactccttacttggtctgtctgcagttGGCCCCAATGGAACAACGTTCCACTCCTTTCAACCTTTCAAAAGGAATATAATTGGAGAGCAGGCAGGGCCTAATGCATTGCAACCACTATG-TGCCTATGCTCCTCCAGGGACCCCTAAAgcatgttaacgatttaagatggtttcctccctaaattgctgggttcagac Alignment from CESAR tgGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG gagtatcagaagtcactaggcagcacactccttacttggtctgtctgcagttGGCCCCAATGGAACAACGTTCCACTCCTTTCAACCTTTCAAAAGGAATATAATTGGAGAGCAGGCAGGGCCTAATGCATTGCAACCACTATGTGCCTATGCTCCTCCAGGGACCCCTAAAgcatgttaacgatttaagatggtttcctccctaaattgctgggttcagac Alignment from Spaln_aa2Genome TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG gagaatcagaagtcactaggcagcacactccttacttggtctgtctgcagTTGGCCCCAATGGAACAACGTTCCACTCCTTTCAACCTTTCAAAAGGAATATAATTGGAGAGCAGGCAGGGCCTAATGCATTGCAACCACTATGTGCCTATGCTCCTCCAGGGACCCCTAAAgcatgttaacgatttaagatggtttcctccctaaattgctgggttcagac Alignment from Spaln_nt2Genome TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG gagaatcagaagtcactaggcagcacactccttacttggtctgtctgcagTTGGCCCCAATGGAACAACGTTCCACTCCTTTCAACCTTTCAAAAGGAATATAATTGGAGAGCAGGCAGGGCCTAATGCATTGCAACCACTATGTGCCTATGCTCCTCCAGGGACCCCTAAAgcatgttaacgatttaagatggtttcctccctaaattgctgggttcagac Alignment from Pairagon TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACC-TTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG gagaatcagaagtcactaggcagcacactccttacttggtctgtctgcagTTGGCCCCAATGGAACAACGTTCCACTCCTTTCAACCTTTCAAAAGGAATATAATTGGAGAGCAGGCAGGGCCTAATGCATTGCAACCACTATG-TGCCTATGCTCCTCCAGGGACCCCTAAAgcatgttaacgatttaagatggtttcctccctaaattgctgggttcagac Alignment from Exonerate_protein2genome TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG gagaatcagaagtcactaggcagcacactccttacttggtctgtctgcagTTGGCCCCAATGGAACAACGTTCCACTCCTTTCAACCTTTCAAAAGGAATATAATTGGAGAGCAGGCAGGGCCTAATGCATTGCAACCACTATGTGCCTATGCTCCTCCAGGGACCCCTAAAgcatgttaacgatttaagatggtttcctccctaaattgctgggttcagac Alignment from Exonerate_coding2genome TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAG gagaatcagaagtcactaggcagcacactccttacttggtctgtctgcagTTGGCCCCAATGGAACAACGTTCCACTCCTTTCAACCTTTCAAAAGGAATATAATTGGAGAGCAGGCAGGGCCTAATGCATTGCAACCACTATGTGCCTATGCTCCTCCAGGGACCCCTAAAgcatgttaacgatttaagatggtttcctccctaaattgctgggttcagac Alignment from GeneWise TGGGCCCCAATGGAACAACCTTCCACTCCTTCCAACCCTTCGAGAAGAATCTGACCGGGGAGCAGGCGGGGCCCAATGTATTGCAACCTTATGCTGCCTACGCTCCCCCTGGGACTCCAAAGGGCC gagaatcagaagtcactaggcagcacactccttacttggtctgtctgcagTTGGCCCCAATGGAACAACGTTCCACTCCTTTCAACCTTTCAAAAGGAATATAATTGGAGAGCAGGCAGGGCCTAATGCATTGCAACCACTATGTGCCTATGCTCCTCCAGGGACCCCTAAAGCATgttaacgatttaagatggtttcctccctaaattgctgggttcagac #### Naaladl1_ID1455_14 --> 0 - 1 Original Alignment AGCAAGACCTCGGCCAGG-ATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTg gttctcacccacatttccgtctactggttacttattgttctctattatagAGCAAGACCTCAGCCAGGCATCTACC-ATCCTATTATGCTGCATTCGATGCACTTGACTATGTTGAAAAATTCCTGGACCCAggtaagactcctctggtgatgtgacacaaccacaggcttgaccagcggagt Alignment from CESAR AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTg gttctcacccacatttccgtctactggttacttattgttctctattatagAGCAAGACCTCAGCCAGGCATCTACCATCCTATTATGCTGCATTCGATGCACTTGACTATGTTGAAAAATTCCTGGACCCAggtaagactcctctggtgatgtgacacaaccacaggcttgaccagcggagt Alignment from Spaln_aa2Genome AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gttctcacccacatttccgtctactggttacttattgttctctattatagAGCAAGACCTCAGCCAGGCATCTACCATCCTATTATGCTGCATTCGATGCACTTGACTATGTTGAAAAATTCCTGGACCCAGgtaagactcctctggtgatgtgacacaaccacaggcttgaccagcggagt Alignment from Spaln_nt2Genome AGCAAGACCTCGGCCAGG-ATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gttctcacccacatttccgtctactggttacttattgttctctattatagAGCAAGACCTCAGCCAGGCATCTA-CCATCCTATTATGCTGCATTCGATGCACTTGACTATGTTGAAAAATTCCTGGACCCAGgtaagactcctctggtgatgtgacacaaccacaggcttgaccagcggagt Alignment from Pairagon AGCAAGACCTCGGCCAGGATCTACCCCACCTACC--------ACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gttctcacccacatttccgtctactggttacttattgttctctattatagAGCAAGACCTCAGCCAGG--------CATCTACCATCCTATTATGCTGCATTCGATGCACTTGACTATGTTGAAAAATTCCTGGACCCAGgtaagactcctctggtgatgtgacacaaccacaggcttgaccagcggagt Alignment from Exonerate_protein2genome AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gttctcacccacatttccgtctactggttacttattgttctctattatagAGCAAGACCTCAGCCAGGCATCTACCATCCTATTATGCTGCATTCGATGCACTTGACTATGTTGAAAAATTCCTGGACCCAGgtaagactcctctggtgatgtgacacaaccacaggcttgaccagcggagt Alignment from Exonerate_coding2genome gttctcacccacatttccgtctactggttacttattgttctctattatagagcaagacctcagccaggcatctaccatcctattatgctgcattcgatgcacttgactatgttgaaaaattcctggacccaggtaagactcctctggtgatgtgacacaaccacaggcttgaccagcggagt Alignment from GeneWise AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gttctcacccacatttccgtctactggttacttattgttctctattatagAGCAAGACCTCAGCCAGGCATCTACCATCCTATTATGCTGCATTCGATGCACTTGACTATGTTGAAAAATTCCTGGACCCAGgtaagactcctctggtgatgtgacacaaccacaggcttgaccagcggagt #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAGGAA-CAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATT---CTGATGTGGACAGAACTCATCCGAg ccaggattctaacgattaatttccttgttccattccaccttgttcctcagagTATGTAAACAAAAAAGAGCCAAGAGG-AGAAGTAGACATGAAGGCAGGT---GACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGggtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAg ccaggattctaacgattaatttccttgttccattccaccttgttcctcagagTATGTAAACAAAAAAGAGCCAAGAGGAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGggtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCCAAGAGGAGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAGGAAC-AGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCCAAGAG-GAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Pairagon AGTATGTGAATAAGAAGGAAC----AGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTC---TGATGTGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCCAAGAGGA----GAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCCAAGAGGAGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Exonerate_coding2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCCAAGAGGAGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCCAAGAGGAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGC-CGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gatggtgcttgattatgactcagttaatcaatccctgtgtgtcttttcaggaGTGTTTGGCTGTCCCACCACTGTGACCAATGTTAAAACAGTGGCTGTGTCCCCCACAATCTGTCCGCCGTGGGG-CACCTGGTTTGCTGGCTTTGGCCGGGAGCACAATTCAGGTACAAAATTGTTCAACATCTTTGGCCATGTCAACCGCCCATGCACTGTGGAGGAAGAGATGGCAGTACCCCTCAAGGAGCTGATTGAGAAACATACTggtaaagctttagccaattaaaggtcagggcatcagaggggtgcttgcaaa Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gatggtgcttgattatgactcagttaatcaatccctgtgtgtcttttcaggaGTGTTTGGCTGTCCCACCACTGTGACCAATGTTAAAACAGTGGCTGTGTCCCCCACAATCTGTCCGCCGTGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAGCACAATTCAGGTACAAAATTGTTCAACATCTTTGGCCATGTCAACCGCCCATGCACTGTGGAGGAAGAGATGGCAGTACCCCTCAAGGAGCTGATTGAGAAACATACTggtaaagctttagccaattaaaggtcagggcatcagaggggtgcttgcaaa Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatggtgcttgattatgactcagttaatcaatccctgtgtgtcttttcagGAGTGTTTGGCTGTCCCACCACTGTGACCAATGTTAAAACAGTGGCTGTGTCCCCCACAATCTGTCCGCCGTGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAGCACAATTCAGGTACAAAATTGTTCAACATCTTTGGCCATGTCAACCGCCCATGCACTGTGGAGGAAGAGATGGCAGTACCCCTCAAGGAGCTGATTGAGAAACATACTGgtaaagctttagccaattaaaggtcagggcatcagaggggtgcttgcaaa Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatggtgcttgattatgactcagttaatcaatccctgtgtgtcttttcagGAGTGTTTGGCTGTCCCACCACTGTGACCAATGTTAAAACAGTGGCTGTGTCCCCCACAATCTGTCCGCCGTGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAGCACAATTCAGGTACAAAATTGTTCAACATCTTTGGCCATGTCAACCGCCCATGCACTGTGGAGGAAGAGATGGCAGTACCCCTCAAGGAGCTGATTGAGAAACATACTGgtaaagctttagccaattaaaggtcagggcatcagaggggtgcttgcaaa Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTG-CCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatggtgcttgattatgactcagttaatcaatccctgtgtgtcttttcagGAGTGTTTGGCTGTCCCACCACTGTGACCAATGTTAAAACAGTGGCTGTGTCCCCCACAATCTGTCCGCCGT-GGGGCACCTGGTTTGCTGGCTTTGGCCGGGAGCACAATTCAGGTACAAAATTGTTCAACATCTTTGGCCATGTCAACCGCCCATGCACTGTGGAGGAAGAGATGGCAGTACCCCTCAAGGAGCTGATTGAGAAACATACTGgtaaagctttagccaattaaaggtcagggcatcagaggggtgcttgcaaa Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatggtgcttgattatgactcagttaatcaatccctgtgtgtcttttcagGAGTGTTTGGCTGTCCCACCACTGTGACCAATGTTAAAACAGTGGCTGTGTCCCCCACAATCTGTCCGCCGTGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAGCACAATTCAGGTACAAAATTGTTCAACATCTTTGGCCATGTCAACCGCCCATGCACTGTGGAGGAAGAGATGGCAGTACCCCTCAAGGAGCTGATTGAGAAACATACTGgtaaagctttagccaattaaaggtcagggcatcagaggggtgcttgcaaa Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatggtgcttgattatgactcagttaatcaatccctgtgtgtcttttcagGAGTGTTTGGCTGTCCCACCACTGTGACCAATGTTAAAACAGTGGCTGTGTCCCCCACAATCTGTCCGCCGTGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAGCACAATTCAGGTACAAAATTGTTCAACATCTTTGGCCATGTCAACCGCCCATGCACTGTGGAGGAAGAGATGGCAGTACCCCTCAAGGAGCTGATTGAGAAACATACTGgtaaagctttagccaattaaaggtcagggcatcagaggggtgcttgcaaa Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatggtgcttgattatgactcagttaatcaatccctgtgtgtcttttcagGAGTGTTTGGCTGTCCCACCACTGTGACCAATGTTAAAACAGTGGCTGTGTCCCCCACAATCTGTCCGCCGTGGGGCACCTGGTTTGCTGGCTTTGGCCGGGAGCACAATTCAGGTACAAAATTGTTCAACATCTTTGGCCATGTCAACCGCCCATGCACTGTGGAGGAAGAGATGGCAGTACCCCTCAAGGAGCTGATTGAGAAACATACTGgtaaagctttagccaattaaaggtcagggcatcagaggggtgcttgcaaa #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggcctgtggggcactcagctatatagaatattccttttcttcttttccagATATGTAACTATGAGGGACCCAGAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGCACGGCAAGC-GTGTTCAGAAGTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTcagtgagtcgcttaacagtcttggagctaatccaagggatatctggatgtcc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggcctgtggggcactcagctatatagaatattccttttcttcttttccagATATGTAACTATGAGGGACCCAGAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGCACGGCAAGCGTGTTCAGAAGTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTcagtgagtcgcttaacagtcttggagctaatccaagggatatctggatgtcc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggcctgtggggcactcagctatatagaatattccttttcttcttttccagATATGTAACTATGAGGGACCCAGAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGCACGGCAAGCGTGTTCAGAAGTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcgcttaacagtcttggagctaatccaagggatatctggatgtcc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggcctgtggggcactcagctatatagaatattccttttcttcttttccagATATGTAACTATGAGGGACCCAGAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGCACGGCAAGC-GTGTTCAGAAGTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcgcttaacagtcttggagctaatccaagggatatctggatgtcc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggcctgtggggcactcagctatatagaatattccttttcttcttttccagATATGTAACTATGAGGGACCCAGAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGCACGGCAAGC-GTGTTCAGAAGTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcgcttaacagtcttggagctaatccaagggatatctggatgtcc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggcctgtggggcactcagctatatagaatattccttttcttcttttccagATATGTAACTATGAGGGACCCAGAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGCACGGCAAGCGTGTTCAGAAGTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcgcttaacagtcttggagctaatccaagggatatctggatgtcc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggcctgtggggcactcagctatatagaatattccttttcttcttttccagATATGTAACTATGAGGGACCCAGAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGCACGGCAAGCGTGTTCAGAAGTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcgcttaacagtcttggagctaatccaagggatatctggatgtcc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggcctgtggggcactcagctatatagaatattccttttcttcttttccagATATGTAACTATGAGGGACCCAGAAAGATTGTCGTTGACCTGGCAACACACAGTGACCCACCTCGTGCACATGCCCACAGTCTGGCACGGCAAGCGTGTTCAGAAGTCGGGGTATGTGCCATTTCTGTAGGCCCCAAGGACATGACTGCTCAgtgagtcgcttaacagtcttggagctaatccaagggatatctggatgtcc #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATC-GAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAg tagtgtgccattctgtttcagacccaacctgagctcacctctctctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTCGAAAGAC-TTTGACTGTGTACCTTCAGCTGAAACGTAAGCGTGGGGGTGATGTTTCAGACTGCAGAGAATACACCTATTATTACTCTTTAGTAGAGggtaagacatcaggggtcactattctgcaaagccagtggaacccctaccca Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAg tagtgtgccattctgtttcagacccaacctgagctcacctctctctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTCGAAAGACTTTGACTGTGTACCTTCAGCTGAAACGTAAGCGTGGGGGTGATGTTTCAGACTGCAGAGAATACACCTATTATTACTCTTTAGTAGAGggtaagacatcaggggtcactattctgcaaagccagtggaacccctaccca Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG tagtgtgccattctgtttcagacccaacctgagctcacctctctctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTCGAAAGACTTTGACTGTGTACCTTCAGCTGAAACGTAAGCGTGGGGGTGATGTTTCAGACTGCAGAGAATACACCTATTATTACTCTTTAGTAGAGGgtaagacatcaggggtcactattctgcaaagccagtggaacccctaccca Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTA---CCCTCTGGTGGAAG tagtgtgccattctgtttcagacccaacctgagctcacctctctctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTCGAAAGACTTTGACTGTGTACCTTCAGCTGAAACGTAAGCGTGGGGGTGATGTTTCAGACTGCAGAGAATACACCTATTATTACTCTTTAGTAGAGGgtaagacatcaggggtcactattctgcaaagccagtggaacccctaccca Alignment from Pairagon TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG tagtgtgccattctgtttcagacccaacctgagctcacctctctctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTCGAAAGACTTTGACTGTGTACCTTCAGCTGAAACGTAAGCGTGGGGGTGATGTTTCAGACTGCAGAGAATACACCTATTATTACTCTTTAGTAGAGGgtaagacatcaggggtcactattctgcaaagccagtggaacccctaccca Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG tagtgtgccattctgtttcagacccaacctgagctcacctctctctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTCGAAAGACTTTGACTGTGTACCTTCAGCTGAAACGTAAGCGTGGGGGTGATGTTTCAGACTGCAGAGAATACACCTATTATTACTCTTTAGTAGAGGgtaagacatcaggggtcactattctgcaaagccagtggaacccctaccca Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG tagtgtgccattctgtttcagacccaacctgagctcacctctctctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTCGAAAGACTTTGACTGTGTACCTTCAGCTGAAACGTAAGCGTGGGGGTGATGTTTCAGACTGCAGAGAATACACCTATTATTACTCTTTAGTAGAGGgtaagacatcaggggtcactattctgcaaagccagtggaacccctaccca Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAG tagtgtgccattctgtttcagacccaacctgagctcacctctctctttagTATGCCATTCCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTCGAAAGACTTTGACTGTGTACCTTCAGCTGAAACGTAAGCGTGGGGGTGATGTTTCAGACTGCAGAGAATACACCTATTATTACTCTTTAGTAGAGGgtaagacatcaggggtcactattctgcaaagccagtggaacccctaccca #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGT-TCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg tgtacatgcttgtatttattaagcctcataatgtttttattttttcacagacAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTACCTACTTTCTCGCAGCCCTTTGGGGGTGGGACCCATATGGGTGGACACCTTTG-TGGGTCCGCGGGGGGTTATGGAGATGCTGGAGGAagtaaccaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg tgtacatgcttgtatttattaagcctcataatgtttttattttttcacagacAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTACCTACTTTCTCGCAGCCCTTTGGGGGTGGGACCCATATGGGTGGACACCTTTGTGGGTCCGCGGGGGGTTATGGAGATGCTGGAGGAagtaaccaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG tgtacatgcttgtatttattaagcctcataatgtttttattttttcacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTACCTACTTTCTCGCAGCCCTTTGGGGGTGGGACCCATATGGGTGGACACCTTTGTGGGTCCGCGGGGGGTTATGGAGATGCTGGAGGAAgtaaccaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG tgtacatgcttgtatttattaagcctcataatgtttttattttttcacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTACCTACTTTCTCGCAGCCCTTTGGGGGTGGGACCCATATGGGTGGACACCTTTGTGGGTCCGCGGGGGGTTATGGAGATGCTGGAGGAAgtaaccaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG tgtacatgcttgtatttattaagcctcataatgtttttattttttcacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTACCTACTTTCTCGCAGCCCTTTGGGGGTGGGACCCATATGGGTGGACACCTTTGTGGGTCCGCGGGGGGTTATGGAGATGCTGGAGGAAgtaaccaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG tgtacatgcttgtatttattaagcctcataatgtttttattttttcacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTACCTACTTTCTCGCAGCCCTTTGGGGGTGGGACCCATATGGGTGGACACCTTTGTGGGTCCGCGGGGGGTTATGGAGATGCTGGAGGAAgtaaccaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG tgtacatgcttgtatttattaagcctcataatgtttttattttttcacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTACCTACTTTCTCGCAGCCCTTTGGGGGTGGGACCCATATGGGTGGACACCTTTGTGGGTCCGCGGGGGGTTATGGAGATGCTGGAGGAAgtaaccaagaaaaatggaaggagaaagaaagaagattagttgatgatatt Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG tgtacatgcttgtatttattaagcctcataatgtttttattttttcacagACAAGGAAGAA------AGTAAAAGGAGGAAGTCGTTACCTACTTTCTCGCAGCCCTTTGGGGGTGGGACCCATATGGGTGGACACCTTTGTGGGTCCGCGGGGGGTTATGGAGATGCTGGAGGAAgtaaccaagaaaaatggaaggagaaagaaagaagattagttgatgatatt #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCC-CCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg atattgcctttgtaaggaccctgattaatcaccccgcttcccctctgcaggtGGAAGCCTTGGTTTCCTATCCCCCCCTTTGGCCTATAATCCATATCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGCGGAACACAAACGGCTGGGTCTAGACGTGACACCGACGCTGGTGAGGGTCCTAAGGAGCCCAGGACGCCCCCCAGAGG-TCCCCAGGGTGAACCACAAGCCCTAGACACACTGCATCGAagcatgtgttggcacgaatcaacacatgctattaaaggagcaacacaggat Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg atattgcctttgtaaggaccctgattaatcaccccgcttcccctctgcaggtGGAAGCCTTGGTTTCCTATCCCCCCCTTTGGCCTATAATCCATATCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGCGGAACACAAACGGCTGGGTCTAGACGTGACACCGACGCTGGTGAGGGTCCTAAGGAGCCCAGGACGCCCCCCAGAGGTCCCCAGGGTGAACCACAAGCCCTAGACACACTGCATCGAagcatgtgttggcacgaatcaacacatgctattaaaggagcaacacaggat Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG atattgcctttgtaaggaccctgattaatcaccccgcttcccctctgcagGTGGAAGCCTTGGTTTCCTATCCCCCCCTTTGGCCTATAATCCATATCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGCGGAACACAAACGGCTGGGTCTAGACGTGACACCGACGCTGGTGAGGGTCCTAAGGAGCCCAGGACGCCCCCCAGAGGTCCCCAGGGTGAACCACAAGCCCTAGACACACTGCATCGAAgcatgtgttggcacgaatcaacacatgctattaaaggagcaacacaggat Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG atattgcctttgtaaggaccctgattaatcaccccgcttcccctctgcagGTGGAAGCCTTGGTTTCCTATCCCCCCCTTTGGCCTATAATCCATATCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGCGGAACACAAACGGCTGGGTCTAGACGTGACACCGACGCTGGTGAGGGTCCTAAGGAGCCCAGGACGCCCCCCAGAGGTCCCCAGGGTGAACCACAAGCCCTAGACACACTGCATCGAAgcatgtgttggcacgaatcaacacatgctattaaaggagcaacacaggat Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG atattgcctttgtaaggaccctgattaatcaccccgcttcccctctgcagGTGGAAGCCTTGGTTTCCTATCCCCCCCTTTGGCCTATAATCCATATCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGCGGAACACAAACGGCTGGGTCTAGACGTGACACCGACGCTGGTGAGGGTCCTAAGGAGCCCAGGACGCCCCCCAGAGGTCCCCAGGGTGAACCACAAGCCCTAGACACACTGCATCGAAgcatgtgttggcacgaatcaacacatgctattaaaggagcaacacaggat Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG atattgcctttgtaaggaccctgattaatcaccccgcttcccctctgcagGTGGAAGCCTTGGTTTCCTATCCCCCCCTTTGGCCTATAATCCATATCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGCGGAACACAAACGGCTGGGTCTAGACGTGACACCGACGCTGGTGAGGGTCCTAAGGAGCCCAGGACGCCCCCCAGAGGTCCCCAGGGTGAACCACAAGCCCTAGACACACTGCATCGAAgcatgtgttggcacgaatcaacacatgctattaaaggagcaacacaggat Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAGCT atattgcctttgtaaggaccctgattaatcaccccgcttcccctctgcagGTGGAAGCCTTGGTTTCCTATCCCCCCCTTTGGCCTATAATCCATATCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGCGGAACACAAACGGCTGGGTCTAGACGTGACACCGACGCTGGTGAGGGTCCTAAGGAGCCCAGGACGCCCCCCAGAGGTCCCCAGGGTGAACCACAAGCCCTAGACACACTGCATCGAAGCatgtgttggcacgaatcaacacatgctattaaaggagcaacacaggat Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAGCTCGC- atattgcctttgtaaggaccctgattaatcaccccgcttcccctctgcagGTGGAAGCCTTGGTTTCCTATCCCCCCCTTTGGCCTATAATCCATATCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGCGGAACACAAACGGCTGGGTCTAGACGTGACACCGACGCTGGTGAGGGTCCTAAGGAGCCCAGGACGCCCCCCAGAGGTCCCCAGGGTGAACCACAAGCCCTAGACACACTGCATCGAAGCATGTgttggcacgaatcaacacatgctattaaaggagcaacacaggat #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTG-CATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttgcctagtcagagtggccactttggattctctgctttgtaaaatcctaggaCTATACCCTGTGCACCTGGCAGTACATGCACAAAGCCCTAAATGTCTGGATCTTTTAGTTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAAGCAAGGGGGCCATAATCCCCTGCCACCTGGCAA-AGAGATGGAAGAATTGGGGTTA---GCCCATTTGGTCACCAAAgtttgtatgtttagactaaaaattgtgataaaatgatatatgctgtatcc Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttgcctagtcagagtggccactttggattctctgctttgtaaaatcctaggaCTATACCCTGTGCACCTGGCAGTACATGCACAAAGCCCTAAATGTCTGGATCTTTTAGTTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAAGCAAGGGGGCCATAATCCCCTGCCACCTGGCAAAGAGATGGAAGAATTGGGGTTA---GCCCATTTGGTCACCAAAgtttgtatgtttagactaaaaattgtgataaaatgatatatgctgtatcc Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttgcctagtcagagtggccactttggattctctgctttgtaaaatcctagGACTATACCCTGTGCACCTGGCAGTACATGCACAAAGCCCTAAATGTCTGGATCTTTTAGTTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAAGCAAGGGGGCCATAATCCCCTGCCACCTGGCAAAGAGATGGAAGAATTGGGGTTA---GCCCATTTGGTCACCAAAgtttgtatgtttagactaaaaattgtgataaaatgatatatgctgtatcc Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttgcctagtcagagtggccactttggattctctgctttgtaaaatcctagGACTATACCCTGTGCACCTGGCAGTACATGCACAAAGCCCTAAATGTCTGGATCTTTTAGTTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAAGCAAGGGGGCCATAATCCCCTGCCACCTGGCAAAGAGATGGAAGAATTGGGGTTAG---CCCATTTGGTCACCAAAgtttgtatgtttagactaaaaattgtgataaaatgatatatgctgtatcc Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttgcctagtcagagtggccactttggattctctgctttgtaaaatcctagGACTATACCCTGTGCACCTGGCAGTACATGCACAAAGCCCTAAATGTCTGGATCTTTTAGTTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAAGCAAGGGGGCCATAATCCCCTGCCACCTGGCAAAGAGATGGAAGAATTGGGGTTAG---CCCATTTGGTCACCAAAgtttgtatgtttagactaaaaattgtgataaaatgatatatgctgtatcc Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttgcctagtcagagtggccactttggattctctgctttgtaaaatcctagGACTATACCCTGTGCACCTGGCAGTACATGCACAAAGCCCTAAATGTCTGGATCTTTTAGTTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAAGCAAGGGGGCCATAATCCCCTGCCACCTGGCAAAGAGATGGAAGAATTGGGGTTA---GCCCATTTGGTCACCAAAgtttgtatgtttagactaaaaattgtgataaaatgatatatgctgtatcc Alignment from Exonerate_coding2genome ttgcctagtcagagtggccactttggattctctgctttgtaaaatcctaggactataccctgtgcacctggcagtacatgcacaaagccctaaatgtctggatcttttagttgattgtggagcagttgtggaggctccagggaagcaagggggccataatcccctgccacctggcaaagagatggaagaattggggttagcccatttggtcaccaaagtttgtatgtttagactaaaaattgtgataaaatgatatatgctgtatcc Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttgcctagtcagagtggccactttggattctctgctttgtaaaatcctagGACTATACCCTGTGCACCTGGCAGTACATGCACAAAGCCCTAAATGTCTGGATCTTTTAGTTGATTGTGGAGCAGTTGTGGAGGCTCCAGGGAAGCAAGGGGGCCATAATCCCCTGCCACCTGGCAAAGAGATGGAAGAATTGGGGTTAGCC---CATTTGGTCACCAAAgtttgtatgtttagactaaaaattgtgataaaatgatatatgctgtatcc #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAAC-TTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG taccccaatgcctcaatttacctttcaaatgagcatgcgcattcccccaggtGCTGACACCCATACAGAGAATGAAGAGCCACTGTGCCCCTTGCCATCTCCCTCAACTTCTGGGAGTGATTCTGACTCTGAGGGGCCTGAAACAGACACCCAAAGAACCCTTCCACGGTC-TACCCCTCTTGACCTCACTCACAGCACAAAGgtgagtaaatggagtctgtgactgtttcgaaaggactcgggtggttgtac Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG taccccaatgcctcaatttacctttcaaatgagcatgcgcattcccccaggtGCTGACACCCATACAGAGAATGAAGAGCCACTGTGCCCCTTGCCATCTCCCTCAACTTCTGGGAGTGATTCTGACTCTGAGGGGCCTGAAACAGACACCCAAAGAACCCTTCCACGGTCTACCCCTCTTGACCTCACTCACAGCACAAAGgtgagtaaatggagtctgtgactgtttcgaaaggactcgggtggttgtac Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG taccccaatgcctcaatttacctttcaaatgagcatgcgcattcccccagGTGCTGACACCCATACAGAGAATGAAGAGCCACTGTGCCCCTTGCCATCTCCCTCAACTTCTGGGAGTGATTCTGACTCTGAGGGGCCTGAAACAGACACCCAAAGAACCCTTCCACGGTCTACCCCTCTTGACCTCACTCACAGCACAAAGgtgagtaaatggagtctgtgactgtttcgaaaggactcgggtggttgtac Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG taccccaatgcctcaatttacctttcaaatgagcatgcgcattcccccagGTGCTGACACCCATACAGAGAATGAAGAGCCACTGTGCCCCTTGCCATCTCCCTCAACTTCTGGGAGTGATTCTGACTCTGAGGGGCCTGAAACAGACACCCAAAGAACCCTTCCACGGTCTACCCCTCTTGACCTCACTCACAGCACAAAGgtgagtaaatggagtctgtgactgtttcgaaaggactcgggtggttgtac Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGGTGA taccccaatgcctcaatttacctttcaaatgagcatgcgcattcccccagGTGCTGACACCCATACAGAGAATGAAGAGCCACTGTGCCCCTTGCCATCTCCCTCAACTTCTGGGAGTGATTCTGACTCTGAGGGGCCTGAAACAGACACCCAAAGAACCCTTCCACGGTCTACCCCTCTTGACCTCACTCACAGCACAAAGGTGAgtaaatggagtctgtgactgtttcgaaaggactcgggtggttgtac Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG taccccaatgcctcaatttacctttcaaatgagcatgcgcattcccccagGTGCTGACACCCATACAGAGAATGAAGAGCCACTGTGCCCCTTGCCATCTCCCTCAACTTCTGGGAGTGATTCTGACTCTGAGGGGCCTGAAACAGACACCCAAAGAACCCTTCCACGGTCTACCCCTCTTGACCTCACTCACAGCACAAAGgtgagtaaatggagtctgtgactgtttcgaaaggactcgggtggttgtac Alignment from Exonerate_coding2genome taccccaatgcctcaatttacctttcaaatgagcatgcgcattcccccaggtgctgacacccatacagagaatgaagagccactgtgccccttgccatctccctcaacttctgggagtgattctgactctgaggggcctgaaacagacacccaaagaacccttccacggtctacccctcttgacctcactcacagcacaaaggtgagtaaatggagtctgtgactgtttcgaaaggactcgggtggttgtac Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG taccccaatgcctcaatttacctttcaaatgagcatgcgcattcccccagGTGCTGACACCCATACAGAGAATGAAGAGCCACTGTGCCCCTTGCCATCTCCCTCAACTTCTGGGAGTGATTCTGACTCTGAGGGGCCTGAAACAGACACCCAAAGAACCCTTCCACGGTCTACCCCTCTTGACCTCACTCACAGCACAAAGgtgagtaaatggagtctgtgactgtttcgaaaggactcgggtggttgtac #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment CTGGCTGGTGGGGACTTGGTGGGT-CTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg ctcagtcaacactgctgcggcctcaactttgatatttgatgttccaatagTCAGCTGGTGGGGACCTGATTGGGCCTATTGG-GGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGCAAAggtaagcaatgaacgggcacttgatagatcatgtctgattagagaagacag Alignment from CESAR CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg ctcagtcaacactgctgcggcctcaactttgatatttgatgttccaatagTCAGCTGGTGGGGACCTGATTGGGCCTATTGGGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGCAAAggtaagcaatgaacgggcacttgatagatcatgtctgattagagaagacag Alignment from Spaln_aa2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG ctcagtcaacactgctgcggcctcaactttgatatttgatgttccaatagTCAGCTGGTGGGGACCTGATTGGGCCTATTGGGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGCAAAGgtaagcaatgaacgggcacttgatagatcatgtctgattagagaagacag Alignment from Spaln_nt2Genome CTGGCTGGTGGGGACTTGGT-GGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG ctcagtcaacactgctgcggcctcaactttgatatttgatgttccaatagTCAGCTGGTGGGGACCTGATTGGGCCTATTGG-GGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGCAAAGgtaagcaatgaacgggcacttgatagatcatgtctgattagagaagacag Alignment from Pairagon CTGGCTGGTGGGGACTTGG-TGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG ctcagtcaacactgctgcggcctcaactttgatatttgatgttccaatagTCAGCTGGTGGGGACCTGATTGGGCCTATTGG-GGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGCAAAGgtaagcaatgaacgggcacttgatagatcatgtctgattagagaagacag Alignment from Exonerate_protein2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG ctcagtcaacactgctgcggcctcaactttgatatttgatgttccaatagTCAGCTGGTGGGGACCTGATTGGGCCTATTGGGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGCAAAGgtaagcaatgaacgggcacttgatagatcatgtctgattagagaagacag Alignment from Exonerate_coding2genome ctcagtcaacactgctgcggcctcaactttgatatttgatgttccaatagtcagctggtggggacctgattgggcctattggggccttatctgacatgggacttcatgagggattcaggcttctgaaaggtccagagacccgtgacaagctacccagcaaaggtaagcaatgaacgggcacttgatagatcatgtctgattagagaagacag Alignment from GeneWise CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG ctcagtcaacactgctgcggcctcaactttgatatttgatgttccaatagTCAGCTGGTGGGGACCTGATTGGGCCTATTGGGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGCAAAGgtaagcaatgaacgggcacttgatagatcatgtctgattagagaagacag #### Noc3l_ID7658_17 --> 2 - 0 Original Alignment gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTT-GCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT accaacatcatcctaccaatgaacacctaggatgtgtgtcttccctgcaggcACGACTAATGATGGCATAGGGATAGTACTTCACTGCTTGGATGTCATGGTTAGTAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATCGCCTTCATCAAGCATCTTTGTACCCTGCGCAT-GCAAGTTCTTCCAAATTCAAGCAATGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaggtcaagggccttgaggtggtgcaggtcaatcaggctacagtctag Alignment from CESAR gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT accaacatcatcctaccaatgaacacctaggatgtgtgtcttccctgcaggcACGACTAATGATGGCATAGGGATAGTACTTCACTGCTTGGATGTCATGGTTAGTAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATCGCCTTCATCAAGCATCTTTGTACCCTGCGCATGCAAGTTCTTCCAAATTCAAGCAATGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaggtcaagggccttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Spaln_aa2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT accaacatcatcctaccaatgaacacctaggatgtgtgtcttccctgcagGCACGACTAATGATGGCATAGGGATAGTACTTCACTGCTTGGATGTCATGGTTAGTAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATCGCCTTCATCAAGCATCTTTGTACCCTGCGCATGCAAGTTCTTCCAAATTCAAGCAATGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaggtcaagggccttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Spaln_nt2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT accaacatcatcctaccaatgaacacctaggatgtgtgtcttccctgcagGCACGACTAATGATGGCATAGGGATAGTACTTCACTGCTTGGATGTCATGGTTAGTAAATGCAGAAAGCATGTCTC---TCAGAGGGCTATCGCCTTCATCAAGCATCTTTGTACCCTGCGCATGCAAGTTCTTCCAAATTCAAGCAATGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaggtcaagggccttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Pairagon GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT accaacatcatcctaccaatgaacacctaggatgtgtgtcttccctgcagGCACGACTAATGATGGCATAGGGATAGTACTTCACTGCTTGGATGTCATGGTTAGTAAATGCAGAAAGCATGTCTC---TCAGAGGGCTATCGCCTTCATCAAGCATCTTTGTACCCTGCGCATGCAAGTTCTTCCAAATTCAAGCAATGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaggtcaagggccttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Exonerate_protein2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT accaacatcatcctaccaatgaacacctaggatgtgtgtcttccctgcagGCACGACTAATGATGGCATAGGGATAGTACTTCACTGCTTGGATGTCATGGTTAGTAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATCGCCTTCATCAAGCATCTTTGTACCCTGCGCATGCAAGTTCTTCCAAATTCAAGCAATGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaggtcaagggccttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Exonerate_coding2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT accaacatcatcctaccaatgaacacctaggatgtgtgtcttccctgcagGCACGACTAATGATGGCATAGGGATAGTACTTCACTGCTTGGATGTCATGGTTAGTAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATCGCCTTCATCAAGCATCTTTGTACCCTGCGCATGCAAGTTCTTCCAAATTCAAGCAATGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaggtcaagggccttgaggtggtgcaggtcaatcaggctacagtctag Alignment from GeneWise GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT accaacatcatcctaccaatgaacacctaggatgtgtgtcttccctgcagGCACGACTAATGATGGCATAGGGATAGTACTTCACTGCTTGGATGTCATGGTTAGTAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATCGCCTTCATCAAGCATCTTTGTACCCTGCGCATGCAAGTTCTTCCAAATTCAAGCAATGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaggtcaagggccttgaggtggtgcaggtcaatcaggctacagtctag #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGT-CTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaatgcatggagtttaattgggccatgtgagttcctctcttcagGAACTTAGTTATCATGAAAGTCCTCCACTGTG-TCAAACTGCTTTTCATGTTCTTTCTGGACCAggtaagtaactcattctgccaccctttcatttcaataaattgttttgcttt Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaatgcatggagtttaattgggccatgtgagttcctctcttcagGAACTTAGTTATCATGAAAGTCCTCCACTGTGTCAAACTGCTTTTCATGTTCTTTCTGGACCAggtaagtaactcattctgccaccctttcatttcaataaaaaatctgtttgt Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaatgcatggagtttaattgggccatgtgagttcctctcttcagGAACTTAGTTATCATGAAAGTCCTCCACTGTGTCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtaagtaactcattctgccaccctttcatttcaataaattgttttgcttt Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTC-TCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaatgcatggagtttaattgggccatgtgagttcctctcttcagGAACTTAGTTATCATGAAAGTCCTCCACTGTG-TCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtaagtaactcattctgccaccctttcatttcaataaattgttttgcttt Alignment from Pairagon GAGCTAAGTTATCAAGAAAGT-CTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaatgcatggagtttaattgggccatgtgagttcctctcttcagGAACTTAGTTATCATGAAAGTCCTCCACTGTG-TCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtaagtaactcattctgccaccctttcatttcaataaattgttttgcttt Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaatgcatggagtttaattgggccatgtgagttcctctcttcagGAACTTAGTTATCATGAAAGTCCTCCACTGTGTCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtaagtaactcattctgccaccctttcatttcaataaattgttttgcttt Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaatgcatggagtttaattgggccatgtgagttcctctcttcagGAACTTAGTTATCATGAAAGTCCTCCACTGTGTCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtaagtaactcattctgccaccctttcatttcaataaattgttttgcttt Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaatgcatggagtttaattgggccatgtgagttcctctcttcagGAACTTAGTTATCATGAAAGTCCTCCACTGTGTCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtaagtaactcattctgccaccctttcatttcaataaattgttttgcttt #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTG-CGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg gcaaggtcctatcctcaagtgccctcatctcccgcgttctgtgttcgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTATGATATTCTGGACCCTACTGACCATCTAACAGTGCTGTCAAC-ACTCACAATGCCCTCTGCTCTTGATGCAggtgagactatcatgaacatgatttcctatgtgtttggtgcacttactaat Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg gcaaggtcctatcctcaagtgccctcatctcccgcgttctgtgttcgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTATGATATTCTGGACCCTACTGACCATCTAACAGTGCTGTCAACACTCACAATGCCCTCTGCTCTTGATGCAggtgagactatcatgaacatgatttcctatgtgtttggtgcacttactaat Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gcaaggtcctatcctcaagtgccctcatctcccgcgttctgtgttcgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTATGATATTCTGGACCCTACTGACCATCTAACAGTGCTGTCAACACTCACAATGCCCTCTGCTCTTGATGCAGgtgagactatcatgaacatgatttcctatgtgtttggtgcacttactaat Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gcaaggtcctatcctcaagtgccctcatctcccgcgttctgtgttcgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTATGATATTCTGGACCCTACTGACCATCTAACAGTGCTGTCAACACTCACAATGCCCTCTGCTCTTGATGCAGgtgagactatcatgaacatgatttcctatgtgtttggtgcacttactaat Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGC-GCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gcaaggtcctatcctcaagtgccctcatctcccgcgttctgtgttcgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTATGATATTCTGGACCCTACTGACCATCTAACAGTGCTGTCAACA-CTCACAATGCCCTCTGCTCTTGATGCAGgtgagactatcatgaacatgatttcctatgtgtttggtgcacttactaat Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gcaaggtcctatcctcaagtgccctcatctcccgcgttctgtgttcgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTATGATATTCTGGACCCTACTGACCATCTAACAGTGCTGTCAACACTCACAATGCCCTCTGCTCTTGATGCAGgtgagactatcatgaacatgatttcctatgtgtttggtgcacttactaat Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gcaaggtcctatcctcaagtgccctcatctcccgcgttctgtgttcgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTATGATATTCTGGACCCTACTGACCATCTAACAGTGCTGTCAACACTCACAATGCCCTCTGCTCTTGATGCAGgtgagactatcatgaacatgatttcctatgtgtttggtgcacttactaat Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gcaaggtcctatcctcaagtgccctcatctcccgcgttctgtgttcgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTATGATATTCTGGACCCTACTGACCATCTAACAGTGCTGTCAACACTCACAATGCCCTCTGCTCTTGATGCAGgtgagactatcatgaacatgatttcctatgtgtttggtgcacttactaat #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAG-GAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccaggtTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCACGAGGAAG-TGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccaggtTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCACGAGGAAGTGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCACGAGGAAGTGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCACGAGGAAGTGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTG-AGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCACGAGGAAG-TGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCACGAGGAAGTGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCACGAGGAAGTGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc #### Nrxn2_ID1761_12 --> 2 - 1 Original Alignment gtAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTC-CGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGg tgcataagagacttcctgctgatttctctattgccctggtcttctttcaggtAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCCAGC-TGGCAAGAGCCTCCAGCTATTTGTTGACAATGTGACTGTGGAGggtaggtggttgagactgcccctgtggttgggagtcctgctcaatctcatt Alignment from CESAR gtAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGg tgcataagagacttcctgctgatttctctattgccctggtcttctttcaggtAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCCAGCTGGCAAGAGCCTCCAGCTATTTGTTGACAATGTGACTGTGGAGggtaggtggttgagactgcccctgtggttgggagtcctgctcaatctcatt Alignment from Spaln_aa2Genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG tgcataagagacttcctgctgatttctctattgccctggtcttctttcagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCCAGCTGGCAAGAGCCTCCAGCTATTTGTTGACAATGTGACTGTGGAGGgtaggtggttgagactgcccctgtggttgggagtcctgctcaatctcatt Alignment from Spaln_nt2Genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG tgcataagagacttcctgctgatttctctattgccctggtcttctttcagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCCAGCTGGCAAGAGCCTCCAGCTATTTGTTGACAATGTGACTGTGGAGGgtaggtggttgagactgcccctgtggttgggagtcctgctcaatctcatt Alignment from Pairagon GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG tgcataagagacttcctgctgatttctctattgccctggtcttctttcagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCCAGCTGGCAAGAGCCTCCAGCTATTTGTTGACAATGTGACTGTGGAGGgtaggtggttgagactgcccctgtggttgggagtcctgctcaatctcatt Alignment from Exonerate_protein2genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG tgcataagagacttcctgctgatttctctattgccctggtcttctttcagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCCAGCTGGCAAGAGCCTCCAGCTATTTGTTGACAATGTGACTGTGGAGGgtaggtggttgagactgcccctgtggttgggagtcctgctcaatctcatt Alignment from Exonerate_coding2genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG tgcataagagacttcctgctgatttctctattgccctggtcttctttcagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCCAGCTGGCAAGAGCCTCCAGCTATTTGTTGACAATGTGACTGTGGAGGgtaggtggttgagactgcccctgtggttgggagtcctgctcaatctcatt Alignment from GeneWise GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG tgcataagagacttcctgctgatttctctattgccctggtcttctttcagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCCAGCTGGCAAGAGCCTCCAGCTATTTGTTGACAATGTGACTGTGGAGGgtaggtggttgagactgcccctgtggttgggagtcctgctcaatctcatt #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATG-GGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggattagatactggcacctttttcttgtctacatttaagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGCGGAAGTTTGT-CCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCTTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgagcactggtctatatggctaccacatgatgcaacatcagagtcacta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggattagatactggcacctttttcttgtctacatttaagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGCGGAAGTTTGTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCTTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgagcactggtctatatggctaccacatgatgcaacatcagagtcacta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggattagatactggcacctttttcttgtctacatttaagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGCGGAAGTTTGTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCTTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgagcactggtctatatggctaccacatgatgcaacatcagagtcacta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATG-GGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggattagatactggcacctttttcttgtctacatttaagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGCGGAAGTTTG-TCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCTTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgagcactggtctatatggctaccacatgatgcaacatcagagtcacta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATG-GGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggattagatactggcacctttttcttgtctacatttaagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGCGGAAGTTTG-TCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCTTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgagcactggtctatatggctaccacatgatgcaacatcagagtcacta Alignment from Exonerate_protein2genome AGACGGATTAAGAAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggattagatactggcacctttttcttgTCTACATTTAAGGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGCGGAAGTTTGTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCTTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgagcactggtctatatggctaccacatgatgcaacatcagagtcacta Alignment from Exonerate_coding2genome ggattgccaaaggattagatactggcacctttttcttgtctacatttaaggaagtaactcatgatatggatatgtgctatggcatgatgcggaagtttgtccggagtagctcccagcagacactctttgccagcttagttatgcgttatgcagacctctacacatcctcattcattaacctactgtactacccattcagctacctcttcagagctgcccacgtcctggtgagcactggtctatatggctaccacatgatgcaacatcagagtcacta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggattagatactggcacctttttcttgtctacatttaagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGCGGAAGTTTGTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCTTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgagcactggtctatatggctaccacatgatgcaacatcagagtcacta #### Nt5c2_ID10037_16 --> 1 - 0 Original Alignment gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATT-AGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcaggCATTTAGACAGCAGCAGC------------AATATACAGTCCTA-CCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from CESAR gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcaggCATTTAGACAGCAGCAGCAAT------------ATACAGTCCTACCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from Spaln_aa2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAAT------------ATACAGTCCTACCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from Spaln_nt2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAAT------------ATACAGTCCTACCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from Pairagon GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTA---------------------------------------------------------------------------- gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAA------------------------------------TATACAGTCCTACCAACGGCAGATCAAAGTAATTAGTTCACATCTGAGAGACAAAACTAGATACTAGGATTGCCAAAG Alignment from Exonerate_protein2genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAAT------------ATACAGTCCTACCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from Exonerate_coding2genome gaggttactcaatgtgtataatataaggtttaccctttcttttttttcaggcatttagacagcagcagcaatatacagtcctaccaacggcagatcaaagtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from GeneWise GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAAT------------ATACAGTCCTACCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCC-CTGCAGCACGGCATTGTCTACTCAGGGg tgagtaccagaccaatgagaaaggtgagaaaaaaaaaaatctccttttagAAAACTGGAAAACTAAAAAATGGC---TACACAGGCCCTCTTACAACAT---GTTGTCTATTCTGGGggtgagtaggccattggcctgcaaggggtcttttcatggaaggtactcttt Alignment from CESAR AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTG-CAGCACGGCATTGTCTACTCAGGGg tgagtaccagaccaatgagaaaggtgagaaaaaaaaaaatctccttttagAAAACTGGAAAACTAAAAAATGGC---TACACAGGCCCTCTTACAACAT---GTTGTCTATTCTGGGggtgagtaggccattggcctgcaaggggtcttttcatggaaggtactcttt Alignment from Spaln_aa2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCC-CTGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagaccaatgagaaaggtgagaaaaaaaaaaatctccttttagAAAACTGGAAAACTAAAAAATGGC---TACACAGGCCCTcTTACAACAT---GTTGTCTATTCTGGGGgtgagtaggccattggcctgcaaggggtcttttcatggaaggtactcttt Alignment from Spaln_nt2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTG-CAGCACGGCATTGTCTACTCAGGGG tgagtaccagaccaatgagaaaggtgagaaaaaaaaaaatctccttttagAAAACTGGAAAACTAAAAAATGG---CTACACAGGCCCTCTTACAACATG---TTGTCTATTCTGGGGgtgagtaggccattggcctgcaaggggtcttttcatggaaggtactcttt Alignment from Pairagon AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCC--------TGCAGCACGGCATTGTCTACTCAGGGG tgagtaccagaccaatgagaaaggtgagaaaaaaaaaaatctccttttagAAAACTGGAAAACTAAAAAATGG---CTACACAGGCCCTCTTACAACATG----------TTGTCTATTCTGGGGgtgagtaggccattggcctgcaaggggtcttttcatggaaggtactcttt Alignment from Exonerate_protein2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGG tgagtaccagaccaatgagaaaggtgagaaaaaaaaaaatctccttttagAAAACTGGAAAACTAAAAAATGGC---TACACAGGCCCTCTTACAACATGTTGTCTATTCTGGGGgtgagtaggccattggcctgcaaggggtcttttcatggaaggtactcttt Alignment from Exonerate_coding2genome tgagtaccagaccaatgagaaaggtgagaaaaaaaaaaatctccttttagaaaactggaaaactaaaaaatggctacacaggccctcttacaacatgttgtctattctgggggtgagtaggccattggcctgcaaggggtcttttcatggaaggtactcttt Alignment from GeneWise AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACG GCATTGTCT tgagtaccagaccaatgagaaaggtgagaaaaaaaaaaatctccttttagAAAACTGGAAAACTAAAAAATGGC---TACACAGGCCCTCTTACAACATgttgtctattctgggggtgagtaggccattggcctgcaaggggtcttttcatggaagGTACTCTTT #### Nt5c2_ID10041_12 --> 0 - 0 Original Alignment CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGG-AAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT cagagccacctctggcttccatagaagacttgtccttttctgtgttacagCCTGGGAGCTCACACCGGCCATGGCAGTCGTACTTTGATCTGATTCTT---GATGCTCGGCAAACCACTCT-TTTTGGTGAAGGAACTGTGCTGCGTCAGATTGACACTgtaagtgtgaaataaattggattaagtagatataaagcctgctcgaccct Alignment from CESAR CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT cagagccacctctggcttccatagaagacttgtccttttctgtgttacagCCTGGGAGCTCACACCGGCCATGGCAGTCGTACTTTGATCTGATTCTT---GATGCTCGGCAAACCACTCTTTTTGGTGAAGGAACTGTGCTGCGTCAGATTGACACTgtaagtgtgaaataaattggattaagtagatataaagcctgctcgaccct Alignment from Spaln_aa2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT cagagccacctctggcttccatagaagacttgtccttttctgtgttacagCCTGGGAGCTCACACCGGCCATGGCAGTCGTACTTTGATCTGATTCTT---GATGCTCGGCAAACCACTCTTTTTGGTGAAGGAACTGTGCTGCGTCAGATTGACACTgtaagtgtgaaataaattggattaagtagatataaagcctgctcgaccct Alignment from Spaln_nt2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT cagagccacctctggcttccatagaagacttgtccttttctgtgttacagCCTGGGAGCTCACACCGGCCATGGCAGTCGTACTTTGATCTGATT---CTTGATGCTCGGCAAACCACTCTTTTTGGTGAAGGAACTGTGCTGCGTCAGATTGACACTgtaagtgtgaaataaattggattaagtagatataaagcctgctcgaccct Alignment from Pairagon CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGG-AAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT cagagccacctctggcttccatagaagacttgtccttttctgtgttacagCCTGGGAGCTCACACCGGCCATGGCAGTCGTACTTTGATCTGATTC---TTGATGCTCGGCAAACCACTC-TTTTTGGTGAAGGAACTGTGCTGCGTCAGATTGACACTgtaagtgtgaaataaattggattaagtagatataaagcctgctcgaccct Alignment from Exonerate_protein2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT cagagccacctctggcttccatagaagacttgtccttttctgtgttacagCCTGGGAGCTCACACCGGCCATGGCAGTCGTACTTTGATCTGATTCTT---GATGCTCGGCAAACCACTCTTTTTGGTGAAGGAACTGTGCTGCGTCAGATTGACACTgtaagtgtgaaataaattggattaagtagatataaagcctgctcgaccct Alignment from Exonerate_coding2genome cagagccacctctggcttccatagaagacttgtccttttctgtgttacagcctgggagctcacaccggccatggcagtcgtactttgatctgattcttgatgctcggcaaaccactctttttggtgaaggaactgtgctgcgtcagattgacactgtaagtgtgaaataaattggattaagtagatataaagcctgctcgaccct Alignment from GeneWise CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT cagagccacctctggcttccatagaagacttgtccttttctgtgttacagCCTGGGAGCTCACACCGGCCATGGCAGTCGTACTTTGATCTGATTCTT---GATGCTCGGCAAACCACTCTTTTTGGTGAAGGAACTGTGCTGCGTCAGATTGACACTgtaagtgtgaaataaattggattaagtagatataaagcctgctcgaccct #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCC-GAACAAATAGAGCAGCTCAAG caaatgtaaaaatgcagcaactgtcctgggtggtgctgttgattctacagATATCTATCATAATCAATACTTCTGCCCCGGCCTACACTGTGCAGAACAAAGTAGAGGCACGAAC-AATAGAGCAGCTCAAAgtgagtttgcatatgtctaccccctgaaatctctagggaaagttaaactg Alignment from CESAR ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG caaatgtaaaaatgcagcaactgtcctgggtggtgctgttgattctacagATATCTATCATAATCAATACTTCTGCCCCGGCCTACACTGTGCAGAACAAAGTAGAGGCACGAACAATAGAGCAGCTCAAAgtgagtttgcatatgtctaccccctgaaatctctagggaaagttaaactg Alignment from Spaln_aa2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG caaatgtaaaaatgcagcaactgtcctgggtggtgctgttgattctacagATATCTATCATAATCAATACTTCTGCCCCGGCCTACACTGTGCAGAACAAAGTAGAGGCACGAACAATAGAGCAGCTCAAAgtgagtttgcatatgtctaccccctgaaatctctagggaaagttaaactg Alignment from Spaln_nt2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACT-GAAGCCCGAACAAATAGAGCAGCTCAAG caaatgtaaaaatgcagcaactgtcctgggtggtgctgttgattctacagATATCTATCATAATCAATACTTCTGCCCCGGCCTACACTGTGCAGAACAAAGTAGAGGCACGAAC-AATAGAGCAGCTCAAAgtgagtttgcatatgtctaccccctgaaatctctagggaaagttaaactg Alignment from Pairagon ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACT-GAAGCCCGAACAAATAGAGCAGCTCAAGCTGA caaatgtaaaaatgcagcaactgtcctgggtggtgctgttgattctacagATATCTATCATAATCAATACTTCTGCCCCGGCCTACACTGTGCAGAACAAAGTAGAGGCACGAAC-AATAGAGCAGCTCAAAGTGAgtttgcatatgtctaccccctgaaatctctagggaaagttaaactg Alignment from Exonerate_protein2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG caaatgtaaaaatgcagcaactgtcctgggtggtgctgttgattctacagATATCTATCATAATCAATACTTCTGCCCCGGCCTACACTGTGCAGAACAAAGTAGAGGCACGAACAATAGAGCAGCTCAAAgtgagtttgcatatgtctaccccctgaaatctctagggaaagttaaactg Alignment from Exonerate_coding2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG caaatgtaaaaatgcagcaactgtcctgggtggtgctgttgattctacagATATCTATCATAATCAATACTTCTGCCCCGGCCTACACTGTGCAGAACAAAGTAGAGGCACGAACAATAGAGCAGCTCAAAgtgagtttgcatatgtctaccccctgaaatctctagggaaagttaaactg Alignment from GeneWise ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG caaatgtaaaaatgcagcaactgtcctgggtggtgctgttgattctacagATATCTATCATAATCAATACTTCTGCCCCGGCCTACACTGTGCAGAACAAAGTAGAGGCACGAACAATAGAGCAGCTCAAAgtgagtttgcatatgtctaccccctgaaatctctagggaaagttaaactg #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTG-CGGATCATTGAAGAGAACATTCCTGAG aggggcccccattttgattagttgtctgatagttttctttaccattctagatTTGGTAGCTCAGAACATTGTCGTAATTCTAAACCGGAGGAGTTGCATGGCAGCAACACTTCCGTACCA-CAAGGATAACATTCCTGAGgtgtgttttattctctctgtgataattaatcgcgtttacttaattggatg Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG aggggcccccattttgattagttgtctgatagttttctttaccattctagatTTGGTAGCTCAGAACATTGTCGTAATTCTAAACCGGAGGAGTTGCATGGCAGCAACACTTCCGTACCACAAGGATAACATTCCTGAGgtgtgttttattctctctgtgataattaatcgcgtttacttaattggatg Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG aggggcccccattttgattagttgtctgatagttttctttaccattctagATTTGGTAGCTCAGAACATTGTCGTAATTCTAAACCGGAGGAGTTGCATGGCAGCAACACTTCCGTACCACAAGGATAACATTCCTGAGgtgtgttttattctctctgtgataattaatcgcgtttacttaattggatg Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG aggggcccccattttgattagttgtctgatagttttctttaccattctagATTTGGTAGCTCAGAACATTGTCGTAATTCTAAACCGGAGGAGTTGCATGGCAGCAACACTTCCGTACCACAAGGATAACATTCCTGAGgtgtgttttattctctctgtgataattaatcgcgtttacttaattggatg Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGC----------GGATCATTGAAGAGAACATTCCTGAG aggggcccccattttgattagttgtctgatagttttctttaccattctagATTTGGTAGCTCAGAACATTGTCGTAATTCTAAACCGGAGGAGTTGCATGGCAGCAACACTTCCGTACCACAAGGAT----------AACATTCCTGAGgtgtgttttattctctctgtgataattaatcgcgtttacttaattggatg Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG aggggcccccattttgattagttgtctgatagttttctttaccattctagATTTGGTAGCTCAGAACATTGTCGTAATTCTAAACCGGAGGAGTTGCATGGCAGCAACACTTCCGTACCACAAGGATAACATTCCTGAGgtgtgttttattctctctgtgataattaatcgcgtttacttaattggatg Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG aggggcccccattttgattagttgtctgatagttttctttaccattctagATTTGGTAGCTCAGAACATTGTCGTAATTCTAAACCGGAGGAGTTGCATGGCAGCAACACTTCCGTACCACAAGGATAACATTCCTGAGgtgtgttttattctctctgtgataattaatcgcgtttacttaattggatg Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG aggggcccccattttgattagttgtctgatagttttctttaccattctagATTTGGTAGCTCAGAACATTGTCGTAATTCTAAACCGGAGGAGTTGCATGGCAGCAACACTTCCGTACCACAAGGATAACATTCCTGAGgtgtgttttattctctctgtgataattaatcgcgtttacttaattggatg #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGCAGC-AACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccag---TTGTCTTTGAACTTGAGTGGACAACCGGC-ATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from CESAR CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccag---TTGTCTTTGAACTTGAGTGGACAACCGGCATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccag---TTGTCTTTGAACTTGAGTGGACAACCGGCATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Spaln_nt2Genome ---- TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA GGAGgcatttgtcatagacaagttcataaactacctcttgtcctacccagTTGTCTTTGAACTTGAGTGGACAACCGGCATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Pairagon CTATTGTCTTTGAACTTGAGCAG-CAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccag---TTGTCTTTGAACTTGAGTGGACAACCGGC-ATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Exonerate_protein2genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccagTTGTCTTTGAACTTGAGTGGACAACCGGCATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Exonerate_coding2genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccagTTGTCTTTGAACTTGAGTGGACAACCGGCATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from GeneWise CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccagTTG---TCTTTGAACTTGAGTGGACAACCGGCATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa #### Nxf1_ID2352_12 --> 0 - 0 Original Alignment GATGGCCATGAGCTACCCCCTCCAATT-TCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTCTCTTTTG-TGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from CESAR GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTCTCTTTTGTGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Spaln_aa2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTCTCTTTTGTGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Spaln_nt2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTCTCTTTTGTGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Pairagon GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTCTCTTTTGTGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Exonerate_protein2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTCTCTTTTGTGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Exonerate_coding2genome atcattacaagttcttagtctatcacatcctatgaaaatattttttctaggatggtcatcaggtacctcccccaattctcttttgtgttgaagctcctacaatgctaccaccctgtaaggtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from GeneWise GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTCTCTTTTGTGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTTGGAACCGAGAAC-CTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca atgagaagatattgcagaacatatgcctaaataaagttttctcctttcagGGATGCTTCTTTGGGGCCAAGAATCTTGAAAAGTT-GGTCATACACTTCTTGCAAcagtatgagccccatataatagtcattgcagtaacaaggggtttataaatat Alignment from CESAR GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca atgagaagatattgcagaacatatgcctaaataaagttttctcctttcagGGATGCTTCTTTGGGGCCAAGAATCTTGAAAAGTTGGTCATACACTTCTTGCAAcagtatgagccccatataatagtcattgcagtaacaaggggtttataaatat Alignment from Spaln_aa2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA atgagaagatattgcagaacatatgcctaaataaagttttctcctttcagGGATGCTTCTTTGGGGCCAAGAATCTTGAAAAGTTGGTCATACACTTCTTGCAACAgtatgagccccatataatagtcattgcagtaacaaggggtttataaatat Alignment from Spaln_nt2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA atgagaagatattgcagaacatatgcctaaataaagttttctcctttcagGGATGCTTCTTTGGGGCCAAGAATCTTGAAAAGTTGGTCATACACTTCTTGCAACAgtatgagccccatataatagtcattgcagtaacaaggggtttataaatat Alignment from Pairagon GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA atgagaagatattgcagaacatatgcctaaataaagttttctcctttcagGGATGCTTCTTTGGGGCCAAGAATCTTGAAAAGTTGGTCATACACTTCTTGCAACAgtatgagccccatataatagtcattgcagtaacaaggggtttataaatat Alignment from Exonerate_protein2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGT atgagaagatattgcagaacatatgcctaaataaagttttctcctttcagggatgcttctttggggccaagaatcttgaaaagttggtcatacacttcttgcaacagtatgagccccatataaTAGTCATTGCAGTAACAAGGGGTTTATAAATAT Alignment from Exonerate_coding2genome GGATGGCCATGAGCTACCCCCTCCAATT---TCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAGGGAAGCTATTTTGGAACCGAGAACCTAAAGAGT atgagaagatattgcagaacatatgcctaaataaagttttctcctttcagGGATGCTTCTTTGGGGCCAAGAATCTTGAAAAGTTGGTCATACACTTCTTGCAACAGTATGAGCCCCATATAATAGTCATTGCAGTAACAAGGGGTTTATAAATAT Alignment from GeneWise --------------------------------------------------GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA ATGAGAAGATATTGCAGAACATATGCCTAAATAAAGTTTTCTCCTTTCAGGGATGCTTCTTTGGGGCCAAGAATCTTGAAAAGTTGGTCATACACTTCTTGCAACAgtatgagccccatataatagtcattgcagtaacaaggggtttataaatat #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGTTTT-TCTGTCAATGGAGTCTTCAAGGAAg acaacagtagctataggcctcttaggttatttccctgacttgtgtttcagAGCACATTACTCAGTCTACTCCT-AAATGGAGTCCTCAAGGAAggtacatgtttttgaatactctttgcagactctgctgtatctccctccttt Alignment from CESAR AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAg acaacagtagctataggcctcttaggttatttccctgacttgtgtttcagAGCACATTACTCAGTCTACTCCTAAATGGAGTCCTCAAGGAAggtacatgtttttgaatactctttgcagactctgctgtatctccctccttt Alignment from Spaln_aa2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acaacagtagctataggcctcttaggttatttccctgacttgtgtttcagAGCACATTACTCAGTCTACTCCTAAATGGAGTCCTCAAGGAAGgtacatgtttttgaatactctttgcagactctgctgtatctccctccttt Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acaacagtagctataggcctcttaggttatttccctgacttgtgtttcagAGCACATTACTCAGTCTACTCCTAAATGGAGTCCTCAAGGAAGgtacatgtttttgaatactctttgcagactctgctgtatctccctccttt Alignment from Pairagon AGCACATTACTGTGTTTTTCTGTC--------AATGGAGTCTTCAAGGAAG acaacagtagctataggcctcttaggttatttccctgacttgtgtttcagAGCACATTAC--------TCAGTCTACTCCTAAATGGAGTCCTCAAGGAAGgtacatgtttttgaatactctttgcagactctgctgtatctccctccttt Alignment from Exonerate_protein2genome acaacagtagctataggcctcttaggttatttccctgacttgtgtttcagagcacattactcagtctactcctaaatggagtcctcaaggaaggtacatgtttttgaatactctttgcagactctgctgtatctccctccttt Alignment from Exonerate_coding2genome acaacagtagctataggcctcttaggttatttccctgacttgtgtttcagagcacattactcagtctactcctaaatggagtcctcaaggaaggtacatgtttttgaatactctttgcagactctgctgtatctccctccttt Alignment from GeneWise acaacagtagctataggcctcttaggttatttccctgacttgtgtttcagagcacattactcagtctactcctaaatggagtcctcaaggaaggtacatgtttttgaatactctttgcagactctgctgtatctccctccttt #### Osbp_ID3347_6 --> 1 - 0 Original Alignment aCGTACTGGCAGC-AATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG agctatgaactagaatccttattatagtatgttgttttctttatttttagaCGTACTGGCAGCCAATATCA-TGGGCCCAGCAGTGATGTCAGCCTTGATGAGCAAgtcagtatacatcctcctaaggtgtgttatgtcctggtaacccctcacaa Alignment from CESAR aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG agctatgaactagaatccttattatagtatgttgttttctttatttttagaCGTACTGGCAGCCAATATCATGGGCCCAGCAGTGATGTCAGCCTTGATGAGCAAgtcagtatacatcctcctaaggtgtgttatgtcctggtaacccctcacaa Alignment from Spaln_aa2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG agctatgaactagaatccttattatagtatgttgttttctttatttttagACGTACTGGCAGCCAATATCATGGGCCCAGCAGTGATGTCAGCCTTGATGAGCAAgtcagtatacatcctcctaaggtgtgttatgtcctggtaacccctcacaa Alignment from Spaln_nt2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG agctatgaactagaatccttattatagtatgttgttttctttatttttagACGTACTGGCAGCCAATATCATGGGCCCAGCAGTGATGTCAGCCTTGATGAGCAAgtcagtatacatcctcctaaggtgtgttatgtcctggtaacccctcacaa Alignment from Pairagon ACGTACTGGCAG-CAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG agctatgaactagaatccttattatagtatgttgttttctttatttttagACGTACTGGCAGCCAATATCA-TGGGCCCAGCAGTGATGTCAGCCTTGATGAGCAAgtcagtatacatcctcctaaggtgtgttatgtcctggtaacccctcacaa Alignment from Exonerate_protein2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG agctatgaactagaatccttattatagtatgttgttttctttatttttagACGTACTGGCAGCCAATATCATGGGCCCAGCAGTGATGTCAGCCTTGATGAGCAAgtcagtatacatcctcctaaggtgtgttatgtcctggtaacccctcacaa Alignment from Exonerate_coding2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG agctatgaactagaatccttattatagtatgttgttttctttatttttagACGTACTGGCAGCCAATATCATGGGCCCAGCAGTGATGTCAGCCTTGATGAGCAAgtcagtatacatcctcctaaggtgtgttatgtcctggtaacccctcacaa Alignment from GeneWise ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG agctatgaactagaatccttattatagtatgttgttttctttatttttagACGTACTGGCAGCCAATATCATGGGCCCAGCAGTGATGTCAGCCTTGATGAGCAAgtcagtatacatcctcctaaggtgtgttatgtcctggtaacccctcacaa #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTA-CAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctcaatactttgtcataccctgctcttctcttcttttcctgtagTTCATGGATTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTTGCTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGCTAACCTCAGGCTATGTCCCAACGAAAAA-CAAGTTCTTTGAACACTACATTGAGGGTGGTCAA---------------AGTCAGGAGgtaaggcctaccccagcacctgtactgaggccttcctttttttagtatga Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctcaatactttgtcataccctgctcttctcttcttttcctgtagTTCATGGATTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTTGCTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGCTAACCTCAGGCTATGTCCCAACGAAAAACAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGT---------------CAGGAGgtaaggcctaccccagcacctgtactgaggccttcctttttttagtatga Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctcaatactttgtcataccctgctcttctcttcttttcctgtagTTCATGGATTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTTGCTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGCTAACCTCAGGCTATGTCCCAACGAAAAACAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGGTAAGGCCTACCCCAgcacctgtactgaggccttcctttttttagtatga Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACT-----GTTAAGGAGTTCTGCCAGCAG-- gaccatctcaatactttgtcataccctgctcttctcttcttttcctgtagTTCATGGATTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTTGCTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGCTAACCTCAGGCTATGTCCCAACGAAAAACAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGGTAAGGCCTAC-CCCAGCACCTgtactgaggccttcctttttttagtatg Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctcaatactttgtcataccctgctcttctcttcttttcctgtagTTCATGGATTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTTGCTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGCTAACCTCAGGCTATGTCCCAACGAAAAACAAGTTCTTTGAACACTACATTGAGGGTGGTCAAA---------------GTCAGGAGgtaaggcctaccccagcacctgtactgaggccttcctttttttagtatga Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAG gaccatctcaatactttgtcataccctgctcttctcttcttttcctgtagTTCATGGATTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTTGCTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGCTAACCTCAGGCTATGTCCCAACGAAAAACAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGgtaaggcctaccccagcacctgtactgaggccttcctttttttagtatga Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAG gaccatctcaatactttgtcataccctgctcttctcttcttttcctgtagTTCATGGATTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTTGCTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGCTAACCTCAGGCTATGTCCCAACGAAAAACAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGgtaaggcctaccccagcacctgtactgaggccttcctttttttagtatga Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctcaatactttgtcataccctgctcttctcttcttttcctgtagTTCATGGATTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTTGCTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGCTAACCTCAGGCTATGTCCCAACGAAAAACAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGT---------------CAGGAGgtaaggcctaccccagcacctgtactgaggccttcctttttttagtatga #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTG-GCTGAAGCCATGTTGACCTGCAGGCATAAGtt tttgaggtatactggaacactactcttactaatgtgttttgctttttcagaaCCACTAGATGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACACACCAGCTTCCTATCCACAG-AGCTATGCTGACCTGCAGACATAAGttgtaagtccatgatgagaactttcaggagaccaggttacactaatagatga Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt tttgaggtatactggaacactactcttactaatgtgttttgctttttcagaaCCACTAGATGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACACACCAGCTTCCTATCCACAGAGCTATGCTGACCTGCAGACATAAGttgtaagtccatgatgagaactttcaggagaccaggttacactaatagatga Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tttgaggtatactggaacactactcttactaatgtgttttgctttttcagAACCACTAGATGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACACACCAGCTTCCTATCCACAGAGCTATGCTGACCTGCAGACATAAGTTgtaagtccatgatgagaactttcaggagaccaggttacactaatagatga Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tttgaggtatactggaacactactcttactaatgtgttttgctttttcagAACCACTAGATGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACACACCAGCTTCCTATCCACAGAGCTATGCTGACCTGCAGACATAAGTTgtaagtccatgatgagaactttcaggagaccaggttacactaatagatga Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tttgaggtatactggaacactactcttactaatgtgttttgctttttcagAACCACTAGATGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACACACCAGCTTCCTATCCACAGAGCTATGCTGACCTGCAGACATAAGTTgtaagtccatgatgagaactttcaggagaccaggttacactaatagatga Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tttgaggtatactggaacactactcttactaatgtgttttgctttttcagAACCACTAGATGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACACACCAGCTTCCTATCCACAGAGCTATGCTGACCTGCAGACATAAGTTgtaagtccatgatgagaactttcaggagaccaggttacactaatagatga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tttgaggtatactggaacactactcttactaatgtgttttgctttttcagAACCACTAGATGTGGTGGGTCATGTGATGCTGTACATCAATGGTTCTATAACAACACACCAGCTTCCTATCCACAGAGCTATGCTGACCTGCAGACATAAGTTgtaagtccatgatgagaactttcaggagaccaggttacactaatagatga #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCA-GTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcaggcTCACATCCTGTAGCC------ATAGGCTCTCGTGGACA-CAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAggtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcaggcTCACATCCTGTAGCC------ATAGGCTCTCGTGGACACAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAggtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCC------ATAGGCTCTCGTGGACACAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCCATAGGCT----CTC-GTGGACA-CAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAG-------------TAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCC-------------------ATAGGCTCTCGTGGACACAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCC------ATAGGCTCTCGTGGACACAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Exonerate_coding2genome atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcaggctcacatcctgtagccataggctctcgtggacacaggtatagcagtacttttctagatcctgcatcaaaagatctattcagccagtcagagcccctggtgtcaggtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCC------ATAGGCTCTCGTGGACACAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAG-TCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg tcttgcacctcacacatcaacctgccccctgacccctcctgcctttgcagtTGCAATTGCAACTCATCAATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGCTCCCTTG-TAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATCCTCTTAggtaaggttacaccatgctaattgtatgtttggaatgagtaatttttattc Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg tcttgcacctcacacatcaacctgccccctgacccctcctgcctttgcagtTGCAATTGCAACTCATCAATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGCTCCCTTGTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATCCTCTTAggtaaggttacaccatgctaattgtatgtttggaatgagtaacattccctg Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcttgcacctcacacatcaacctgccccctgacccctcctgcctttgcagTTGCAATTGCAACTCATCAATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGCTCCCTTGTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATCCTCTTAGgtaaggttacaccatgctaattgtatgtttggaatgagtaatttttattc Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcttgcacctcacacatcaacctgccccctgacccctcctgcctttgcagTTGCAATTGCAACTCATCAATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGCTCCCTTGTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATCCTCTTAGgtaaggttacaccatgctaattgtatgtttggaatgagtaatttttattc Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcttgcacctcacacatcaacctgccccctgacccctcctgcctttgcagTTGCAATTGCAACTCATCAATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGCTCCCTTGTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATCCTCTTAGgtaaggttacaccatgctaattgtatgtttggaatgagtaatttttattc Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcttgcacctcacacatcaacctgccccctgacccctcctgcctttgcagTTGCAATTGCAACTCATCAATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGCTCCCTTGTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATCCTCTTAGgtaaggttacaccatgctaattgtatgtttggaatgagtaatttttattc Alignment from Exonerate_coding2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcttgcacctcacacatcaacctgccccctgacccctcctgcctttgcagTTGCAATTGCAACTCATCAATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGCTCCCTTGTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATCCTCTTAGgtaaggttacaccatgctaattgtatgtttggaatgagtaatttttattc Alignment from GeneWise CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tcttgcacctcacacatcaacctgccccctgacccctcctgcctttgcagTTGCAATTGCAACTCATCAATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGCTCCCTTGTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATCCTCTTAGgtaaggttacaccatgctaattgtatgtttggaatgagtaatttttattc #### Pacs1_ID881_13 --> 1 - 0 Original Alignment cAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGT-GAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttccccgctttcttttcttctcttacagtAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGTACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAACGAACTAATAGTGCTGACAGTCGAGA-GTCACCAGATCTGGGCCACAGCATACAGgtgggagtgttgtggttgatgcttttggaaaactaagtgattgaagttac Alignment from CESAR cAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttccccgctttcttttcttctcttacagtAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGTACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAACGAACTAATAGTGCTGACAGTCGAGAGTCACCAGATCTGGGCCACAGCATACAGgtgggagtgttgtggttgatgcttttggaaaactaagtgattgaagttac Alignment from Spaln_aa2Genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttccccgctttcttttcttctcttacagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGTACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAACGAACTAATAGTGCTGACAGTCGAGAGTCACCAGATCTGGGCCACAGCATACAGgtgggagtgttgtggttgatgcttttggaaaactaagtgattgaagttac Alignment from Spaln_nt2Genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttccccgctttcttttcttctcttacagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGTACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAACGAACTAATAGTGCTGACAGTCGAGAGTCACCAGATCTGGGCCACAGCATACAGgtgggagtgttgtggttgatgcttttggaaaactaagtgattgaagttac Alignment from Pairagon CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGT---GAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttccccgctttcttttcttctcttacagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGTACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAACGAACTAATAGTGCTGACAGTCGAGAG---TCACCAGATCTGGGCCACAGCATACAGgtgggagtgttgtggttgatgcttttggaaaactaagtgattgaagttac Alignment from Exonerate_protein2genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttccccgctttcttttcttctcttacagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGTACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAACGAACTAATAGTGCTGACAGTCGAGAGTCACCAGATCTGGGCCACAGCATACAGgtgggagtgttgtggttgatgcttttggaaaactaagtgattgaagttac Alignment from Exonerate_coding2genome tttgtagttggcttctgtctgcttccccgctttcttttcttctcttacagtaaggtggaagggacacacacacctccacagaaaagaagtacaccccttaaggagcgacaacttctaaaacccctgagtgaacgaactaatagtgctgacagtcgagagtcaccagatctgggccacagcatacaggtgggagtgttgtggttgatgcttttggaaaactaagtgattgaagttac Alignment from GeneWise CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttccccgctttcttttcttctcttacagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGTACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAACGAACTAATAGTGCTGACAGTCGAGAGTCACCAGATCTGGGCCACAGCATACAGgtgggagtgttgtggttgatgcttttggaaaactaagtgattgaagttac #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAG-GAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG accggattttgttaaactctcctgcagtaaatttttcttctaactttcagacCGCGCCCCAGACATCGACAATTATTCAGAGGAGGAGCGAGGAAA-CTTCTTCTCAGCACAGGATGACACTGATGAACCACTGCATGGACAAgtaagtatttgacagtgtggcagtgtacaatttgaaacagggtgaggcac Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG accggattttgttaaactctcctgcagtaaatttttcttctaactttcagacCGCGCCCCAGACATCGACAATTATTCAGAGGAGGAGCGAGGAAACTTCTTCTCAGCACAGGATGACACTGATGAACCACTGCATGGACAAgtaagtatttgacagtgtggcagtgtacaatttgaaacagggtgaggcac Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG accggattttgttaaactctcctgcagtaaatttttcttctaactttcagACCGCGCCCCAGACATCGACAATTATTCAGAGGAGGAGCGAGGAAACTTCTTCTCAGCACAGGATGACACTGATGAACCACTGCATGGACAAgtaagtatttgacagtgtggcagtgtacaatttgaaacagggtgaggcac Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAG-GAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG accggattttgttaaactctcctgcagtaaatttttcttctaactttcagACCGCGCCCCAGACATCGACAATTATTCAGAGGAGGAGCGAGGAAA-CTTCTTCTCAGCACAGGATGACACTGATGAACCACTGCATGGACAAgtaagtatttgacagtgtggcagtgtacaatttgaaacagggtgaggcac Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG accggattttgttaaactctcctgcagtaaatttttcttctaactttcagACCGCGCCCCAGACATCGACAATTATTCAGAGGAGGAGCGAGGAAACTTCTTCTCAGCACAGGATGACACTGATGAACCACTGCATGGACAAgtaagtatttgacagtgtggcagtgtacaatttgaaacagggtgaggcac Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG accggattttgttaaactctcctgcagtaaatttttcttctaactttcagACCGCGCCCCAGACATCGACAATTATTCAGAGGAGGAGCGAGGAAACTTCTTCTCAGCACAGGATGACACTGATGAACCACTGCATGGACAAgtaagtatttgacagtgtggcagtgtacaatttgaaacagggtgaggcac Alignment from Exonerate_coding2genome accggattttgttaaactctcctgcagtaaatttttcttctaactttcagaccgcgccccagacatcgacaattattcagaggaggagcgaggaaacttcttctcagcacaggatgacactgatgaaccactgcatggacaagtaagtatttgacagtgtggcagtgtacaatttgaaacagggtgaggcac Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG accggattttgttaaactctcctgcagtaaatttttcttctaactttcagACCGCGCCCCAGACATCGACAATTATTCAGAGGAGGAGCGAGGAAACTTCTTCTCAGCACAGGATGACACTGATGAACCACTGCATGGACAAgtaagtatttgacagtgtggcagtgtacaatttgaaacagggtgaggcac #### Patl1_ID3327_12 --> 2 - 0 Original Alignment tgCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATA-GATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggaccctgatcaacggttaggagttacttccttgctcttttctctagtgCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATACGATGCTG-TGTGACATCTAGAAGCGAGGATGATgtaaggttgagggcagtgttcacagtcagttactatgacaaaatccatcc Alignment from CESAR tgCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggaccctgatcaacggttaggagttacttccttgctcttttctctagtgCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATACGATGCTGTGTGACATCTAGAAGCGAGGATGATgtaaggttgagggcagtgttcacagtcagttactatgacaaaatccatcc Alignment from Spaln_aa2Genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggaccctgatcaacggttaggagttacttccttgctcttttctctagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATACGATGCTGTGTGACATCTAGAAGCGAGGATGATgtaaggttgagggcagtgttcacagtcagttactatgacaaaatccatcc Alignment from Spaln_nt2Genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggaccctgatcaacggttaggagttacttccttgctcttttctctagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATACGATGCTGTGTGACATCTAGAAGCGAGGATGATgtaaggttgagggcagtgttcacagtcagttactatgacaaaatccatcc Alignment from Pairagon TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATA-GATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggaccctgatcaacggttaggagttacttccttgctcttttctctagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATACGATGCTG-TGTGACATCTAGAAGCGAGGATGATgtaaggttgagggcagtgttcacagtcagttactatgacaaaatccatcc Alignment from Exonerate_protein2genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggaccctgatcaacggttaggagttacttccttgctcttttctctagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATACGATGCTGTGTGACATCTAGAAGCGAGGATGATgtaaggttgagggcagtgttcacagtcagttactatgacaaaatccatcc Alignment from Exonerate_coding2genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggaccctgatcaacggttaggagttacttccttgctcttttctctagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATACGATGCTGTGTGACATCTAGAAGCGAGGATGATgtaaggttgagggcagtgttcacagtcagttactatgacaaaatccatcc Alignment from GeneWise TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggaccctgatcaacggttaggagttacttccttgctcttttctctagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATACGATGCTGTGTGACATCTAGAAGCGAGGATGATgtaaggttgagggcagtgttcacagtcagttactatgacaaaatccatcc #### Patl1_ID3332_17 --> 0 - 2 Original Alignment TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCT-ATAGAATCAACGCAAAATAACCAGtg tgaccatggggttcgatatctgaacatgcagccactcattcaccctccagTTTGGGTTGTCACTGCTCTTAATCCTACTGAGCCGAGGAGAAGACCTGCAGAGCTCTGATCCAGCTCATAGAAC-TACGCAGAATAATCAGtggtgagctactgtagcgggccatgtgaatcaactttgttgccttccatgtc Alignment from CESAR TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGtg tgaccatggggttcgatatctgaacatgcagccactcattcaccctccagTTTGGGTTGTCACTGCTCTTAATCCTACTGAGCCGAGGAGAAGACCTGCAGAGCTCTGATCCAGCTCATAGAACTACGCAGAATAATCAGtggtgagctactgtagcgggccatgtgaatcaactttgttgccttccatgtc Alignment from Spaln_aa2Genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG tgaccatggggttcgatatctgaacatgcagccactcattcaccctccagTTTGGGTTGTCACTGCTCTTAATCCTACTGAGCCGAGGAGAAGACCTGCAGAGCTCTGATCCAGCTCATAGAACTACGCAGAATAATCAGTGgtgagctactgtagcgggccatgtgaatcaactttgttgccttccatgtc Alignment from Spaln_nt2Genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCT-ATAGAATCAACGCAAAATAACCAGTG tgaccatggggttcgatatctgaacatgcagccactcattcaccctccagTTTGGGTTGTCACTGCTCTTAATCCTACTGAGCCGAGGAGAAGACCTGCAGAGCTCTGATCCAGCTCATAGAA-CTACGCAGAATAATCAGTGgtgagctactgtagcgggccatgtgaatcaactttgttgccttccatgtc Alignment from Pairagon TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCT-ATAGAATCAACGCAAAATAACCAGTG tgaccatggggttcgatatctgaacatgcagccactcattcaccctccagTTTGGGTTGTCACTGCTCTTAATCCTACTGAGCCGAGGAGAAGACCTGCAGAGCTCTGATCCAGCTCATAGAA-CTACGCAGAATAATCAGTGgtgagctactgtagcgggccatgtgaatcaactttgttgccttccatgtc Alignment from Exonerate_protein2genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG tgaccatggggttcgatatctgaacatgcagccactcattcaccctccagTTTGGGTTGTCACTGCTCTTAATCCTACTGAGCCGAGGAGAAGACCTGCAGAGCTCTGATCCAGCTCATAGAACTACGCAGAATAATCAGTGgtgagctactgtagcgggccatgtgaatcaactttgttgccttccatgtc Alignment from Exonerate_coding2genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG tgaccatggggttcgatatctgaacatgcagccactcattcaccctccagTTTGGGTTGTCACTGCTCTTAATCCTACTGAGCCGAGGAGAAGACCTGCAGAGCTCTGATCCAGCTCATAGAACTACGCAGAATAATCAGTGgtgagctactgtagcgggccatgtgaatcaactttgttgccttccatgtc Alignment from GeneWise TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG tgaccatggggttcgatatctgaacatgcagccactcattcaccctccagTTTGGGTTGTCACTGCTCTTAATCCTACTGAGCCGAGGAGAAGACCTGCAGAGCTCTGATCCAGCTCATAGAACTACGCAGAATAATCAGTGgtgagctactgtagcgggccatgtgaatcaactttgttgccttccatgtc #### Pcgf6_ID10084_3 --> 2 - 2 Original Alignment ttTGTAAAAGCTGCATT-GTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag tataatattaagtaacaatcataaagtaccattctttctttcatccacagttTGTAAAAGCTGCATTCGTGAGACATT-TTACTATAGCAATAGATGCCCAAAGTGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAaggtgagtaggtatggacctgcttcaaactatttcgttcattgttacagtcc Alignment from CESAR ttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag tataatattaagtaacaatcataaagtaccattctttctttcatccacagttTGTAAAAGCTGCATTCGTGAGACATTTTACTATAGCAATAGATGCCCAAAGTGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAaggtgagtaggtatggacctgcttcaaactatttcgttcattgttacagtcc Alignment from Spaln_aa2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaagtaacaatcataaagtaccattctttctttcatccacagTTTGTAAAAGCTGCATTCGTGAGACATTTTACTATAGCAATAGATGCCCAAAGTGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtgagtaggtatggacctgcttcaaactatttcgttcattgttacagtcc Alignment from Spaln_nt2Genome TTTGTAAAAGCTGCATT-GTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaagtaacaatcataaagtaccattctttctttcatccacagTTTGTAAAAGCTGCATTCGTGAGACA-TTTTACTATAGCAATAGATGCCCAAAGTGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtgagtaggtatggacctgcttcaaactatttcgttcattgttacagtcc Alignment from Pairagon TTTGTAAAAGCTGCATT-GTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaagtaacaatcataaagtaccattctttctttcatccacagTTTGTAAAAGCTGCATTCGTGAGACA-TTTTACTATAGCAATAGATGCCCAAAGTGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtgagtaggtatggacctgcttcaaactatttcgttcattgttacagtcc Alignment from Exonerate_protein2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaagtaacaatcataaagtaccattctttctttcatccacagTTTGTAAAAGCTGCATTCGTGAGACATTTTACTATAGCAATAGATGCCCAAAGTGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtgagtaggtatggacctgcttcaaactatttcgttcattgttacagtcc Alignment from Exonerate_coding2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaagtaacaatcataaagtaccattctttctttcatccacagTTTGTAAAAGCTGCATTCGTGAGACATTTTACTATAGCAATAGATGCCCAAAGTGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtgagtaggtatggacctgcttcaaactatttcgttcattgttacagtcc Alignment from GeneWise TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaagtaacaatcataaagtaccattctttctttcatccacagTTTGTAAAAGCTGCATTCGTGAGACATTTTACTATAGCAATAGATGCCCAAAGTGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtgagtaggtatggacctgcttcaaactatttcgttcattgttacagtcc #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGG-AGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaaattatgaactgaaatgttggccgggcaaacaccatgcctttccccaggcAGCAGCGAACAGCCCCTCCCACCAGGCCCTAGCTGGGGACCAAGGCCCTCACTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCGCCCCCTCGGCTCCAAGGACCACCTCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGCAGTTTGG-GGGTCAGAAGGGCCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAAGGTGGTAGACCCAAGTCTCAGgtgggcaggacctcatggtaaagaggcgtcctcagtgacaaggtggttac Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaaattatgaactgaaatgttggccgggcaaacaccatgcctttccccaggcAGCAGCGAACAGCCCCTCCCACCAGGCCCTAGCTGGGGACCAAGGCCCTCACTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCGCCCCCTCGGCTCCAAGGACCACCTCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGCAGTTTGGGGGTCAGAAGGGCCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAAGGTGGTAGACCCAAGTCTCAGgtgggcaggacctcatggtaaagaggcgtcctcagtgacaaggtggttac Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaaattatgaactgaaatgttggccgggcaaacaccatgcctttccccagGCAGCAGCGAACAGCCCCTCCCACCAGGCCCTAGCTGGGGACCAAGGCCCTCACTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCGCCCCCTCGGCTCCAAGGACCACCTCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGCAGTTTGGGGGTCAGAAGGGCCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAAGGTGGTAGACCCAAGTCTCAGgtgggcaggacctcatggtaaagaggcgtcctcagtgacaaggtggttac Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaaattatgaactgaaatgttggccgggcaaacaccatgcctttccccagGCAGCAGCGAACAGCCCCTCCCACCAGGCCCTAGCTGGGGACCAAGGCCCTCACTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCGCCCCCTCGGCTCCAAGGACCACCTCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGCAGTTTGGGGGTCAGAAGGGCCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAAGGTGGTAGACCCAAGTCTCAGgtgggcaggacctcatggtaaagaggcgtcctcagtgacaaggtggttac Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaaattatgaactgaaatgttggccgggcaaacaccatgcctttccccagGCAGCAGCGAACAGCCCCTCCCACCAGGCCCTAGCTGGGGACCAAGGCCCTCACTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCGCCCCCTCGGCTCCAAGGACCACCTCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGCAGTTTGGGGGTCAGAAGGGCCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAAGGTGGTAGACCCAAGTCTCAGgtgggcaggacctcatggtaaagaggcgtcctcagtgacaaggtggttac Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaaattatgaactgaaatgttggccgggcaaacaccatgcctttccccagGCAGCAGCGAACAGCCCCTCCCACCAGGCCCTAGCTGGGGACCAAGGCCCTCACTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCGCCCCCTCGGCTCCAAGGACCACCTCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGCAGTTTGGGGGTCAGAAGGGCCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAAGGTGGTAGACCCAAGTCTCAGgtgggcaggacctcatggtaaagaggcgtcctcagtgacaaggtggttac Alignment from Exonerate_coding2genome aaaattatgaactgaaatgttggccgggcaaacaccatgcctttccccaggcagcagcgaacagcccctcccaccaggccctagctggggaccaaggccctcactaattggctctggagatgggcagccccgttctcttttacagtggccgccccctcggctccaaggaccacctccagtttcacctgtccccactgatggacctcagccctcacgactttcgggccctgctctccttaattcagagggacccagtgggaagtggcagtttgggggtcagaagggcctggaaggatctgatggggaacctgcttctgggagcccaaaaggtggtagacccaagtctcaggtgggcaggacctcatggtaaagaggcgtcctcagtgacaaggtggttac Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG aaaattatgaactgaaatgttggccgggcaaacaccatgcctttccccagGCAGCAGCGAACAGCCCCTCCCACCAGGCCCTAGCTGGGGACCAAGGCCCTCACTAATTGGCTCTGGAGATGGGCAGCCCCGTTCTCTTTTACAGTGGCCGCCCCCTCGGCTCCAAGGACCACCTCCAGTTTCACCTGTCCCCACTGATGGACCTCAGCCCTCACGACTTTCGGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGCAGTTTGGGGGTCAGAAGGGCCTGGAAGGATCTGATGGGGAACCTGCTTCTGGGAGCCCAAAAGGTGGTAGACCCAAGTCTCAGgtgggcaggacctcatggtaaagaggcgtcctcagtgacaaggtggttac #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAG---GGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGT-GGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg tatgtttacgtgcttcacctcatgcagcgtctcttattattttgttttaggCTTCATAAGAAGGGTTGTGGTGCCGGCTGCAATAGTGGAGGTAATCTTGATGATGCAGATTGTCGGTCGGGGTG-TGGCTTGGCTTCCCTCGGCAACCATCCTCCCTTGGTTCACCCTACGCCAGACAATGTGGCAggtagaggcaagatcttaagaaaattatgaactgaaatgttggccgggttt Alignment from CESAR aCTTCATAAG---GGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg tatgtttacgtgcttcacctcatgcagcgtctcttattattttgttttaggCTTCATAAGAAGGGTTGTGGTGCCGGCTGCAATAGTGGAGGTAATCTTGATGATGCAGATTGTCGGTCGGGGTGTGGCTTGGCTTCCCTCGGCAACCATCCTCCCTTGGTTCACCCTACGCCAGACAATGTGGCAggtagaggcaagatcttaagaaaattatgaactgaaatgttggccgggcaa Alignment from Spaln_aa2Genome ACTTCAT---AAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG tatgtttacgtgcttcacctcatgcagcgtctcttattattttgttttagGCTTCATAAGAAGGGTTGTGGTGCCGGCTGCAATAGTGGAGGTAATCTTGATGATGCAGATTGTCGGTCGGGGTGTGGCTTGGCTTCCCTCGGCAACCATCCTCCCTTGGTTCACCCTACGCCAGACAATGTGGCAGgtagaggcaagatcttaagaaaattatgaactgaaatgttggccgggttt Alignment from Spaln_nt2Genome ACTTCATAAG---GGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGT-GGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG tatgtttacgtgcttcacctcatgcagcgtctcttattattttgttttagGCTTCATAAGAAGGGTTGTGGTGCCGGCTGCAATAGTGGAGGTAATCTTGATGATGCAGATTGTCGGTCGGGGT-GTGGCTTGGCTTCCCTCGGCAACCATCCTCCCTTGGTTCACCCTACGCCAGACAATGTGGCAGgtagaggcaagatcttaagaaaattatgaactgaaatgttggccgggttt Alignment from Pairagon ACTTCAT---AAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGT-GGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG tatgtttacgtgcttcacctcatgcagcgtctcttattattttgttttagGCTTCATAAGAAGGGTTGTGGTGCCGGCTGCAATAGTGGAGGTAATCTTGATGATGCAGATTGTCGGTCGGGGT-GTGGCTTGGCTTCCCTCGGCAACCATCCTCCCTTGGTTCACCCTACGCCAGACAATGTGGCAGgtagaggcaagatcttaagaaaattatgaactgaaatgttggccgggttt Alignment from Exonerate_protein2genome ACTTCAT---AAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG tatgtttacgtgcttcacctcatgcagcgtctcttattattttgttttagGCTTCATAAGAAGGGTTGTGGTGCCGGCTGCAATAGTGGAGGTAATCTTGATGATGCAGATTGTCGGTCGGGGTGTGGCTTGGCTTCCCTCGGCAACCATCCTCCCTTGGTTCACCCTACGCCAGACAATGTGGCAGgtagaggcaagatcttaagaaaattatgaactgaaatgttggccgggttt Alignment from Exonerate_coding2genome tatgtttacgtgcttcacctcatgcagcgtctcttattattttgttttaggcttcataagaagggttgtggtgccggctgcaatagtggaggtaatcttgatgatgcagattgtcggtcggggtgtggcttggcttccctcggcaaccatcctcccttggttcaccctacgccagacaatgtggcaggtagaggcaagatcttaagaaaattatgaactgaaatgttggccgggttt Alignment from GeneWise ACTTCATAAG---GGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG tatgtttacgtgcttcacctcatgcagcgtctcttattattttgttttagGCTTCATAAGAAGGGTTGTGGTGCCGGCTGCAATAGTGGAGGTAATCTTGATGATGCAGATTGTCGGTCGGGGTGTGGCTTGGCTTCCCTCGGCAACCATCCTCCCTTGGTTCACCCTACGCCAGACAATGTGGCAGgtagaggcaagatcttaagaaaattatgaactgaaatgttggccgggttt #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACA-CTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACACTCATGCT-TGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCaggtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACACTCATGCTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCaggtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACACTCATGCTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACACTCATGCTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACACTCATGCTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACACTCATGCTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Exonerate_coding2genome gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagcctgtggaacaggattggaattcaccattggttacactcatgcttggcttgtgtgtgttgggtcgccgggctctgggcacagcagcacacagcatgtcagccaggtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACACTCATGCTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTAC-CTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg acacaatgcacttactttgtttaattgactcctttgttcttcgattgcaggaGCTGATGACAATAACCTT---TTGCTTTTCTATCAACATTTGACACGCTCACTGCAACATATGCTTTGTGATGATCTGGTCCTGGGCTGCTGGGGCAACCATGGTCCAGGAGATTGCATTGTACTGGCACCAGACTACCCTAAATGGAC-TGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGggtaggccttggaatcaagctcgagctaagggtggcccatagacatatgag Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg acacaatgcacttactttgtttaattgactcctttgttcttcgattgcaggaGCTGATGACAATAACCTT---TTGCTTTTCTATCAACATTTGACACGCTCACTGCAACATATGCTTTGTGATGATCTGGTCCTGGGCTGCTGGGGCAACCATGGTCCAGGAGATTGCATTGTACTGGCACCAGACTACCCTAAATGGACTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGggtaggccttggaatcaagctcgagctaagggtggcccatagacatatgag Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG acacaatgcacttactttgtttaattgactcctttgttcttcgattgcagGAGCTGATGACAATAACCTT---TTGCTTTTCTATCAACATTTGACACGCTCACTGCAACATATGCTTTGTGATGATCTGGTCCTGGGCTGCTGGGGCAACCATGGTCCAGGAGATTGCATTGTACTGGCACCAGACTACCCTAAATGGACTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtaggccttggaatcaagctcgagctaagggtggcccatagacatatgag Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG acacaatgcacttactttgtttaattgactcctttgttcttcgattgcagGAGCTGATGACAATAACCT---TTTGCTTTTCTATCAACATTTGACACGCTCACTGCAACATATGCTTTGTGATGATCTGGTCCTGGGCTGCTGGGGCAACCATGGTCCAGGAGATTGCATTGTACTGGCACCAGACTACCCTAAATGGACTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtaggccttggaatcaagctcgagctaagggtggcccatagacatatgag Alignment from Pairagon GCGCTGATGACAACAACCT----CAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTA--------GTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG acacaatgcacttactttgtttaattgactcctttgttcttcgattgcagGAGCTGATGACAATAACCTTTTGC-------TTTTCTATCAACATTTGACACGCTCACTGCAACATATGCTTTGTGATGATCTGGTCCTGGGCTGCTGGGGCAACCATGGTCCAGGAGATTGCATTGTACTGGCACCAGACTACC--------CTAAATGGACTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtaggccttggaatcaagctcgagctaagggtggcccatagacatatgag Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG acacaatgcacttactttgtttaattgactcctttgttcttcgattgcagGAGCTGATGACAATAACCTT---TTGCTTTTCTATCAACATTTGACACGCTCACTGCAACATATGCTTTGTGATGATCTGGTCCTGGGCTGCTGGGGCAACCATGGTCCAGGAGATTGCATTGTACTGGCACCAGACTACCCTAAATGGACTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtaggccttggaatcaagctcgagctaagggtggcccatagacatatgag Alignment from Exonerate_coding2genome acacaatgcacttactttgtttaattgactcctttgttcttcgattgcaggagctgatgacaataaccttttgcttttctatcaacatttgacacgctcactgcaacatatgctttgtgatgatctggtcctgggctgctggggcaaccatggtccaggagattgcattgtactggcaccagactaccctaaatggactgtccagctcattgaggttggcaatggtctcatcacctaccagccccatggcctcaagttccggggtaggccttggaatcaagctcgagctaagggtggcccatagacatatgag Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG acacaatgcacttactttgtttaattgactcctttgttcttcgattgcagGAGCTGATGACAATAACCTT---TTGCTTTTCTATCAACATTTGACACGCTCACTGCAACATATGCTTTGTGATGATCTGGTCCTGGGCTGCTGGGGCAACCATGGTCCAGGAGATTGCATTGTACTGGCACCAGACTACCCTAAATGGACTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtaggccttggaatcaagctcgagctaagggtggcccatagacatatgag #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment GTGGCCACTg tgTTCACCTTATGCTTTCCG-TTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg GTGGCAACTggtgtgtcacctcaagatagctgaatgctctgtacctccagtaTTCACCTTATGCTTTCCCCTTTGTCT-CCTGCTGGGGCTCCTGCCTCAGGTCAACACCTGCCTGACATACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAggtgagatgtgctcggaaaggtctaggccatgaatattacatgtaccaaat Alignment from CESAR GTGGCCACTg tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg GTGGCAACTggtgagtcacctcaagatagctgaatgctctgtacctccagtaTTCACCTTATGCTTTCCCCTTTGTCTCCTGCTGGGGCTCCTGCCTCAGGTCAACACCTGCCTGACATACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAggtgagatgtgctcggaaaggtctaggccatgaatattacatgtaccaaat Alignment from Spaln_aa2Genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtgtgtcacctcaagatagctgaatgctctgtacctccagTATTCACCTTATGCTTTCCCCTTTGTCTCCTGCTGGGGCTCCTGCCTCAGGTCAACACCTGCCTGACATACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgagatgtgctcggaaaggtctaggccatgaatattacatgtaccaaat Alignment from Spaln_nt2Genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtgtgtcacctcaagatagctgaatgctctgtacctccagTATTCACCTTATGCTTTCCCCTTTGTCTCCTGCTGGGGCTCCTGCCTCAGGTCAACACCTGCCTGACATACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgagatgtgctcggaaaggtctaggccatgaatattacatgtaccaaat Alignment from Pairagon GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtgtgtcacctcaagatagctgaatgctctgtacctccagTATTCACCTTATGCTTTCCCCTTTGTCTCCTGCTGGGGCTCCTGCCTCAGGTCAACACCTGCCTGACATACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgagatgtgctcggaaaggtctaggccatgaatattacatgtaccaaat Alignment from Exonerate_protein2genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtgtgtcacctcaagatagctgaatgctctgtacctccagTATTCACCTTATGCTTTCCCCTTTGTCTCCTGCTGGGGCTCCTGCCTCAGGTCAACACCTGCCTGACATACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgagatgtgctcggaaaggtctaggccatgaatattacatgtaccaaat Alignment from Exonerate_coding2genome gtggcaactggtgtgtcacctcaagatagctgaatgctctgtacctccagtattcaccttatgctttcccctttgtctcctgctggggctcctgcctcaggtcaacacctgcctgacatacctctcggaacaaattgatatgcatggttttggaggcacaggtgagatgtgctcggaaaggtctaggccatgaatattacatgtaccaaat Alignment from GeneWise GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtgtgtcacctcaagatagctgaatgctctgtacctccagTATTCACCTTATGCTTTCCCCTTTGTCTCCTGCTGGGGCTCCTGCCTCAGGTCAACACCTGCCTGACATACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgagatgtgctcggaaaggtctaggccatgaatattacatgtaccaaat #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTC-AGCTCCCAAGAGAAACTGa gcaatacaaagaggaaatggcatgacaagtctttttgttttttaaacaagacATTAAAGAGCTGGTACGGGAGCAGAGCAGTAACAATATAATTGTTACGTCTGCAGGCCGTGAAATGCTGAGGCTCCAGCT-TAAGGAGAAACTCagtgagttgaaatgttggaagctgttcttaaagggtgaacacccttaaaag Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa gcaatacaaagaggaaatggcatgacaagtctttttgttttttaaacaagacATTAAAGAGCTGGTACGGGAGCAGAGCAGTAACAATATAATTGTTACGTCTGCAGGCCGTGAAATGCTGAGGCTCCAGCTTAAGGAGAAACTCagtgagttgaaatgttggaagctgttcttaaagggtgaacacccttaaaag Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaatacaaagaggaaatggcatgacaagtctttttgttttttaaacaagACATTAAAGAGCTGGTACGGGAGCAGAGCAGTAACAATATAATTGTTACGTCTGCAGGCCGTGAAATGCTGAGGCTCCAGCTTAAGGAGAAACTCAgtgagttgaaatgttggaagctgttcttaaagggtgaacacccttaaaag Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTC-AGCTCCCAAGAGAAACTGA gcaatacaaagaggaaatggcatgacaagtctttttgttttttaaacaagACATTAAAGAGCTGGTACGGGAGCAGAGCAGTAACAATATAATTGTTACGTCTGCAGGCCGTGAAATGCTGAGGCTCCAGCT-TAAGGAGAAACTCAgtgagttgaaatgttggaagctgttcttaaagggtgaacacccttaaaag Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTC-------AGCTCCCAAGAGAAACTGA gcaatacaaagaggaaatggcatgacaagtctttttgttttttaaacaagACATTAAAGAGCTGGTACGGGAGCAGAGCAGTAACAATATAATTGTTACGTCTGCAGGCCGTGAAATGCTGAGGCTCCAGCTTAAG-------GAGAAACTCAgtgagttgaaatgttggaagctgttcttaaagggtgaacacccttaaaag Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaatacaaagaggaaatggcatgacaagtctttttgttttttaaacaagACATTAAAGAGCTGGTACGGGAGCAGAGCAGTAACAATATAATTGTTACGTCTGCAGGCCGTGAAATGCTGAGGCTCCAGCTTAAGGAGAAACTCAgtgagttgaaatgttggaagctgttcttaaagggtgaacacccttaaaag Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaatacaaagaggaaatggcatgacaagtctttttgttttttaaacaagACATTAAAGAGCTGGTACGGGAGCAGAGCAGTAACAATATAATTGTTACGTCTGCAGGCCGTGAAATGCTGAGGCTCCAGCTTAAGGAGAAACTCAgtgagttgaaatgttggaagctgttcttaaagggtgaacacccttaaaag Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA gcaatacaaagaggaaatggcatgacaagtctttttgttttttaaacaagACATTAAAGAGCTGGTACGGGAGCAGAGCAGTAACAATATAATTGTTACGTCTGCAGGCCGTGAAATGCTGAGGCTCCAGCTTAAGGAGAAACTCAgtgagttgaaatgttggaagctgttcttaaagggtgaacacccttaaaag #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGGATG-GAGGATTCTGGGCCCCTCAGAg ttgactgcaagcatgggcttgctgcagctaagttttctatgttttcttagAAGTTGCTACCACAGATGCGAGGATT-TGGACCTCTCAGAggtaaattgtgtcagactgtatcatgtcaagagaggcctagccagtgtcag Alignment from CESAR GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg ttgactgcaagcatgggcttgctgcagctaagttttctatgttttcttagAAGTTGCTACCACAGATGCGAGGATTTGGACCTCTCAGAggtaaattgtgtcagactgtatcatgtcaagagaggcctagccagtgtcag Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG ttgactgcaagcatgggcttgctgcagctaagttttctatgttttcttagAAGTTGCTACCACAGATGCGAGGATTTGGACCTCTCAGAGgtaaattgtgtcagactgtatcatgtcaagagaggcctagccagtgtcag Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGGATG-GAGGATTCTGGGCCCCTCAGAG ttgactgcaagcatgggcttgctgcagctaagttttctatgttttcttagAAGTTGCTACCACAGATGCGAGGATT-TGGACCTCTCAGAGgtaaattgtgtcagactgtatcatgtcaagagaggcctagccagtgtcag Alignment from Pairagon GAGTTGCTGCCCCGGATG-GAGGATTCTGGGCCCCTCAGAG ttgactgcaagcatgggcttgctgcagctaagttttctatgttttcttagAAGTTGCTACCACAGATGCGAGGATT-TGGACCTCTCAGAGgtaaattgtgtcagactgtatcatgtcaagagaggcctagccagtgtcag Alignment from Exonerate_protein2genome ttgactgcaagcatgggcttgctgcagctaagttttctatgttttcttagaagttgctaccacagatgcgaggatttggacctctcagaggtaaattgtgtcagactgtatcatgtcaagagaggcctagccagtgtcag Alignment from Exonerate_coding2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAAC ttgactgcaagcatgggcttgctgcagctaagttttctatgttttcttaGAAGTTGCTACCACAGATGCGAGGATTTGGACCTCTCAGAGGTAAATTGTGTCAGACTGTATCATGTCAAGAGAGGCCTAGCCAGTGTCAG Alignment from GeneWise GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG ttgactgcaagcatgggcttgctgcagctaagttttctatgttttcttagAAGTTGCTACCACAGATGCGAGGATTTGGACCTCTCAGAGgtaaattgtgtcagactgtatcatgtcaagagaggcctagccagtgtcag #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGC-ACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggagggggtctgagcacagcctctccccaggtGAGATTGCTATCCGCGTCTTTCGTGCTTGCAGAGAACTTGGCATCCGCCACAGTAGCTG-GTATTCAGAACAGGATACAGGGCTAACACACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTTGCACCTGTCCAAACCTATTTGCACATTCCAGACATCATTAGGGTTTCGAAGgtgagaatcaattatctttacagggggagagaaaagtcccactcatttgt Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggagggggtctgagcacagcctctccccaggtGAGATTGCTATCCGCGTCTTTCGTGCTTGCAGAGAACTTGGCATCCGCCACAGTAGCTGGTATTCAGAACAGGATACAGGGCTAACACACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTTGCACCTGTCCAAACCTATTTGCACATTCCAGACATCATTAGGGTTTCGAAGgtgagaatcaattatctttacagggggagagaaaagtcccactcatttgt Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggagggggtctgagcacagcctctccccagGTGAGATTGCTATCCGCGTCTTTCGTGCTTGCAGAGAACTTGGCATCCGCCACAGTAGCTGGTATTCAGAACAGGATACAGGGCTAACACACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTTGCACCTGTCCAAACCTATTTGCACATTCCAGACATCATTAGGGTTTCGAAGgtgagaatcaattatctttacagggggagagaaaagtcccactcatttgt Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGC-ACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggagggggtctgagcacagcctctccccagGTGAGATTGCTATCCGCGTCTTTCGTGCTTGCAGAGAACTTGGCATCCGCCACAGTAGCTG-GTATTCAGAACAGGATACAGGGCTAACACACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTTGCACCTGTCCAAACCTATTTGCACATTCCAGACATCATTAGGGTTTCGAAGgtgagaatcaattatctttacagggggagagaaaagtcccactcatttgt Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCG-CACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggagggggtctgagcacagcctctccccagGTGAGATTGCTATCCGCGTCTTTCGTGCTTGCAGAGAACTTGGCATCCGCCACAGTAGCTG-GTATTCAGAACAGGATACAGGGCTAACACACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTTGCACCTGTCCAAACCTATTTGCACATTCCAGACATCATTAGGGTTTCGAAGgtgagaatcaattatctttacagggggagagaaaagtcccactcatttgt Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggagggggtctgagcacagcctctccccagGTGAGATTGCTATCCGCGTCTTTCGTGCTTGCAGAGAACTTGGCATCCGCCACAGTAGCTGGTATTCAGAACAGGATACAGGGCTAACACACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTTGCACCTGTCCAAACCTATTTGCACATTCCAGACATCATTAGGGTTTCGAAGgtgagaatcaattatctttacagggggagagaaaagtcccactcatttgt Alignment from Exonerate_coding2genome tggtggttcctatccccaggggagggggtctgagcacagcctctccccaggtgagattgctatccgcgtctttcgtgcttgcagagaacttggcatccgccacagtagctggtattcagaacaggatacagggctaacacacaggcagaaaacagatgagggttaccttcttggtcgtggccttgcacctgtccaaacctatttgcacattccagacatcattagggtttcgaaggtgagaatcaattatctttacagggggagagaaaagtcccactcatttgt Alignment from GeneWise ---GCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tggtggttcctatccccaggggagggggtctgagcacagcctctccccaggtgagATTGCTATCCGCGTCTTTCGTGCTTGCAGAGAACTTGGCATCCGCCACAGTAGCTGGTATTCAGAACAGGATACAGGGCTAACACACAGGCAGAAAACAGATGAGGGTTACCTTCTTGGTCGTGGCCTTGCACCTGTCCAAACCTATTTGCACATTCCAGACATCATTAGGGTTTCGAAGgtgagaatcaattatctttacagggggagagaaaagtcccactcatttgt #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAG-GCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg attgcacatgtcagatcaatgaacacttctctgttttcttcttcaaacagGAAAATGGTGAAGATGCAGTGCATCCAGGTTATGGTTTTCTCTCTGAGCAGGCGGATTTTGCCCAGCGCCTGCC-GGACACTGGAGTCCGATTCATTGGACCAAGCCCAGAGGTGATACTTAAAACA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAggtaggttaccaaacagaacattaaatttaaatcaggagtacaggtgtttt Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg attgcacatgtcagatcaatgaacacttctctgttttcttcttcaaacagGAAAATGGTGAAGATGCAGTGCATCCAGGTTATGGTTTTCTCTCTGAGCAGGCGGATTTTGCCCAGCGCCTGCCGGACACTGGAGTCCGATTCATTGGACCAAGCCCAGAGGTGATACTTAAAACA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAggtaggttaccaaacagaacattaaatttaaatcaggagtacaggtgtttt Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG attgcacatgtcagatcaatgaacacttctctgttttcttcttcaaacagGAAAATGGTGAAGATGCAGTGCATCCAGGTTATGGTTTTCTCTCTGAGCAGGCGGATTTTGCCCAGCGCCTGCCGGACACTGGAGTCCGATTCATTGGACCAAGCCCAGAGGTGATACTTAAAACA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaccaaacagaacattaaatttaaatcaggagtacaggtgtttt Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG attgcacatgtcagatcaatgaacacttctctgttttcttcttcaaacagGAAAATGGTGAAGATGCAGTGCATCCAGGTTATGGTTTTCTCTCTGAGCAGGCGGATTTTGCCCAGCGCCTGCCGGACACTGGAGTCCGATTCATTGGACCAAGCCCAGAGGTGATACTTAAAA---CAGACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaccaaacagaacattaaatttaaatcaggagtacaggtgtttt Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAG-GCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG attgcacatgtcagatcaatgaacacttctctgttttcttcttcaaacagGAAAATGGTGAAGATGCAGTGCATCCAGGTTATGGTTTTCTCTCTGAGCAGGCGGATTTTGCCCAGCGCCTGCC-GGACACTGGAGTCCGATTCATTGGACCAAGCCCAGAGGTGATACTTAAAAC---AGACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaccaaacagaacattaaatttaaatcaggagtacaggtgtttt Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG attgcacatgtcagatcaatgaacacttctctgttttcttcttcaaacagGAAAATGGTGAAGATGCAGTGCATCCAGGTTATGGTTTTCTCTCTGAGCAGGCGGATTTTGCCCAGCGCCTGCCGGACACTGGAGTCCGATTCATTGGACCAAGCCCAGAGGTGATACTTAAAACA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaccaaacagaacattaaatttaaatcaggagtacaggtgtttt Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG attgcacatgtcagatcaatgaacacttctctgttttcttcttcaaacagGAAAATGGTGAAGATGCAGTGCATCCAGGTTATGGTTTTCTCTCTGAGCAGGCGGATTTTGCCCAGCGCCTGCCGGACACTGGAGTCCGATTCATTGGACCAAGCCCAGAGGTGATACTTAAAACA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaccaaacagaacattaaatttaaatcaggagtacaggtgtttt Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG attgcacatgtcagatcaatgaacacttctctgttttcttcttcaaacagGAAAATGGTGAAGATGCAGTGCATCCAGGTTATGGTTTTCTCTCTGAGCAGGCGGATTTTGCCCAGCGCCTGCCGGACACTGGAGTCCGATTCATTGGACCAAGCCCAGAGGTGATACTTAAAACA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaccaaacagaacattaaatttaaatcaggagtacaggtgtttt #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCC-AGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctttgaaattgggaaaacagtgaaatgtttaatttctgttgcttaaggaCATGTTATGGTCAATGGACCTATCTCACCAATCCCAGTCAATGTGACGCCTCAGTC-TGTAGATGCTGCTGTTCCAGCAGTCCCTATAggtaaggtataatataccttctgagtgagaaggtgtgtcagagacagcatc Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctttgaaattgggaaaacagtgaaatgtttaatttctgttgcttaaggaCATGTTATGGTCAATGGACCTATCTCACCAATCCCAGTCAATGTGACGCCTCAGTCTGTAGATGCTGCTGTTCCAGCAGTCCCTATAggtaaggtataatataccttctgagtgagaaggtgtgtcagagacagcatc Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctttgaaattgggaaaacagtgaaatgtttaatttctgttgcttaagGACATGTTATGGTCAATGGACCTATCTCACCAATCCCAGTCAATGTGACGCCTCAGTCTGTAGATGCTGCTGTTCCAGCAGTCCCTATAGgtaaggtataatataccttctgagtgagaaggtgtgtcagagacagcatc Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctttgaaattgggaaaacagtgaaatgtttaatttctgttgcttaagGACATGTTATGGTCAATGGACCTATCTCACCAATCCCAGTCAATGTGACGCCTCAGTCTGTAGATGCTGCTGTTCCAGCAGTCCCTATAGgtaaggtataatataccttctgagtgagaaggtgtgtcagagacagcatc Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGA-GCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctttgaaattgggaaaacagtgaaatgtttaatttctgttgcttaagGACATGTTATGGTCAATGGACCTATCTCACCAATCCCAGTCAATGTGACGCCTCAGT-CTGTAGATGCTGCTGTTCCAGCAGTCCCTATAGgtaaggtataatataccttctgagtgagaaggtgtgtcagagacagcatc Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctttgaaattgggaaaacagtgaaatgtttaatttctgttgcttaagGACATGTTATGGTCAATGGACCTATCTCACCAATCCCAGTCAATGTGACGCCTCAGTCTGTAGATGCTGCTGTTCCAGCAGTCCCTATAGgtaaggtataatataccttctgagtgagaaggtgtgtcagagacagcatc Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGC actctttgaaattgggaaaacagtgaaatgtttaatttctgttgcttaaggacatgttatggtcaatggacctatctcaccaatcccagtcaatgtgacgcctcagtctgtagatgctgctgttccagcagtccctatagGTAAGGTATAATATACCTTCTGAGTGAGAAGGTGTGTCAGAGACAGCATC Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctttgaaattgggaaaacagtgaaatgtttaatttctgttgcttaagGACATGTTATGGTCAATGGACCTATCTCACCAATCCCAGTCAATGTGACGCCTCAGTCTGTAGATGCTGCTGTTCCAGCAGTCCCTATAGgtaaggtataatataccttctgagtgagaaggtgtgtcagagacagcatc #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAA-GAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG caatttgttatagaccacaacgttgtgattttttttttttggtctttcaggTTCTGCGAAGTGGCCAAAGAGAATGACATGGATGTATTTCGTGTCTTCGACTCCCTCAACTATTTACCAAACATGCTGCTTGGTATGAAATCTGCTGGCAGTGCTGGGGCAGTAGTTGAGGCTGCCATATCTTACGCTGGTGAAGTAGCTGACCCTGGTCGCACGAACTACTCACTGGAGTACTACATGGGCTTAGCTGAACGAACTGGTAC-AACTGGATCTCACATTTTGTGTATTAGGgtatttaggctactaggtgtgtccccatctttacatcatggctgaggcac Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG caatttgttatagaccacaacgttgtgattttttttttttggtctttcaggTTCTGCGAAGTGGCCAAAGAGAATGACATGGATGTATTTCGTGTCTTCGACTCCCTCAACTATTTACCAAACATGCTGCTTGGTATGAAATCTGCTGGCAGTGCTGGGGCAGTAGTTGAGGCTGCCATATCTTACGCTGGTGAAGTAGCTGACCCTGGTCGCACGAACTACTCACTGGAGTACTACATGGGCTTAGCTGAACGAACTGGTACAACTGGATCTCACATTTTGTGTATTAGGgtatttaggctactaggtgtgtccccatctttacatcatggctgaggcac Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG caatttgttatagaccacaacgttgtgattttttttttttggtctttcagGTTCTGCGAAGTGGCCAAAGAGAATGACATGGATGTATTTCGTGTCTTCGACTCCCTCAACTATTTACCAAACATGCTGCTTGGTATGAAATCTGCTGGCAGTGCTGGGGCAGTAGTTGAGGCTGCCATATCTTACGCTGGTGAAGTAGCTGACCCTGGTCGCACGAACTACTCACTGGAGTACTACATGGGCTTAGCTGAACGAACTGGTACAACTGGATCTCACATTTTGTGTATTAGGgtatttaggctactaggtgtgtccccatctttacatcatggctgaggcac Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAA-GAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG caatttgttatagaccacaacgttgtgattttttttttttggtctttcagGTTCTGCGAAGTGGCCAAAGAGAATGACATGGATGTATTTCGTGTCTTCGACTCCCTCAACTATTTACCAAACATGCTGCTTGGTATGAAATCTGCTGGCAGTGCTGGGGCAGTAGTTGAGGCTGCCATATCTTACGCTGGTGAAGTAGCTGACCCTGGTCGCACGAACTACTCACTGGAGTACTACATGGGCTTAGCTGAACGAACTGGTAC-AACTGGATCTCACATTTTGTGTATTAGGgtatttaggctactaggtgtgtccccatctttacatcatggctgaggcac Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAA-GAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG caatttgttatagaccacaacgttgtgattttttttttttggtctttcagGTTCTGCGAAGTGGCCAAAGAGAATGACATGGATGTATTTCGTGTCTTCGACTCCCTCAACTATTTACCAAACATGCTGCTTGGTATGAAATCTGCTGGCAGTGCTGGGGCAGTAGTTGAGGCTGCCATATCTTACGCTGGTGAAGTAGCTGACCCTGGTCGCACGAACTACTCACTGGAGTACTACATGGGCTTAGCTGAACGAACTGGTAC-AACTGGATCTCACATTTTGTGTATTAGGgtatttaggctactaggtgtgtccccatctttacatcatggctgaggcac Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG caatttgttatagaccacaacgttgtgattttttttttttggtctttcagGTTCTGCGAAGTGGCCAAAGAGAATGACATGGATGTATTTCGTGTCTTCGACTCCCTCAACTATTTACCAAACATGCTGCTTGGTATGAAATCTGCTGGCAGTGCTGGGGCAGTAGTTGAGGCTGCCATATCTTACGCTGGTGAAGTAGCTGACCCTGGTCGCACGAACTACTCACTGGAGTACTACATGGGCTTAGCTGAACGAACTGGTACAACTGGATCTCACATTTTGTGTATTAGGgtatttaggctactaggtgtgtccccatctttacatcatggctgaggcac Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG caatttgttatagaccacaacgttgtgattttttttttttggtctttcagGTTCTGCGAAGTGGCCAAAGAGAATGACATGGATGTATTTCGTGTCTTCGACTCCCTCAACTATTTACCAAACATGCTGCTTGGTATGAAATCTGCTGGCAGTGCTGGGGCAGTAGTTGAGGCTGCCATATCTTACGCTGGTGAAGTAGCTGACCCTGGTCGCACGAACTACTCACTGGAGTACTACATGGGCTTAGCTGAACGAACTGGTACAACTGGATCTCACATTTTGTGTATTAGGgtatttaggctactaggtgtgtccccatctttacatcatggctgaggcac Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG caatttgttatagaccacaacgttgtgattttttttttttggtctttcagGTTCTGCGAAGTGGCCAAAGAGAATGACATGGATGTATTTCGTGTCTTCGACTCCCTCAACTATTTACCAAACATGCTGCTTGGTATGAAATCTGCTGGCAGTGCTGGGGCAGTAGTTGAGGCTGCCATATCTTACGCTGGTGAAGTAGCTGACCCTGGTCGCACGAACTACTCACTGGAGTACTACATGGGCTTAGCTGAACGAACTGGTACAACTGGATCTCACATTTTGTGTATTAGGgtatttaggctactaggtgtgtccccatctttacatcatggctgaggcac #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTAC-ACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttctttccctttcaactacttttgtacatctgtattttgttctctttcagctTTGCCACTAGAAAAAGTATTTGACTATAGTGGGTATTGGGAAGGTTCTAGGGGACTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGACCTATACAAGAATGAGGTA------------TACCACCAATC-GCATTTCCCAGCACAC------AGACTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtgcgttagattgcctcatacttctctgctgcacttgcagaagcctgtct Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttctttccctttcaactacttttgtacatctgtattttgttctctttcagctTTGCCACTAGAAAAAGTATTTGACTATAGTGGGTATTGGGAAGGTTCTAGGGGACTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGACCTATACAAGAATGAGGTA------------TACCACCAATCGCATTTCCCAGCACACAGA------CTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtgcgttagattgcctcatacttctctgctgcacttgcagaagcctctct Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttctttccctttcaactacttttgtacatctgtattttgttctctttcagCTTTGCCACTAGAAAAAGTATTTGACTATAGTGGGTATTGGGAAGGTTCTAGGGGACTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGACCTATACAAGAATGAGGTA------------TACCACCAATCGCATTTCCCAGCACAC------AGACTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtgcgttagattgcctcatacttctctgctgcacttgcagaagcctgtct Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttctttccctttcaactacttttgtacatctgtattttgttctctttcagCTTTGCCACTAGAAAAAGTATTTGACTATAGTGGGTATTGGGAAGGTTCTAGGGGACTGTA------TTTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGACCTATACAAGAATGAGGT-----------ATACCACCAATC-GCATTTCCCAGCACACA------GACTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtgcgttagattgcctcatacttctctgctgcacttgcagaagcctgtct Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGG--------------------------------CTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCAT------------------------------------------------------ ttctttccctttcaactacttttgtacatctgtattttgttctctttcagctttgccactagaaaaag------------------TATTTGACTATAGTGGGTATTGGGAAGGTTCTAGGGGACTGTA------TTTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGACCTATACAAGAATGA--------------------------------------------------GGTATACCACCAATCGCATTTCCCAGCACACAGACTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAGTGCGTTAGATTGCCTCATACTTCTCTGCTGCACTTGCAGAAGCCTGTCT Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttctttccctttcaactacttttgtacatctgtattttgttctctttcagCTTTGCCACTAGAAAAAGTATTTGACTATAGTGGGTATTGGGAAGGTTCTAGGGGACTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGACCTATACAAGAATGAGGTA------------TACCACCAATCGCATTTCCCAGCACACAGA------CTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtgcgttagattgcctcatacttctctgctgcacttgcagaagcctgtct Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttctttccctttcaactacttttgtacatctgtattttgttctctttcagCTTTGCCACTAGAAAAAGTATTTGACTATAGTGGGTATTGGGAAGGTTCTAGGGGACTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGACCTATACAAGAATGAGGTA------------TACCACCAATCGCATTTCCCAGCACACAGA------CTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtgcgttagattgcctcatacttctctgctgcacttgcagaagcctgtct Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttctttccctttcaactacttttgtacatctgtattttgttctctttcagCTTTGCCACTAGAAAAAGTATTTGACTATAGTGGGTATTGGGAAGGTTCTAGGGGACTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGACCTATACAAGAATGAGGTA------------TACCACCAATCGCATTTCCCAGCACACAGA------CTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtgcgttagattgcctcatacttctctgctgcacttgcagaagcctgtct #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAAC-CGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCCGCACTG-CCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgtgggactctttgtattttccagGAAATGCA Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCCGCACTGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttggaccaagatctctctctttcagGAAATGCA Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCAC aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCCGCACTGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgtgggactctttgtattttccagGAAATGCA Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCCGCACTGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgtgggactctttgtattttccagGAAATGCA Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCCGCACTGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgtgggactctttgtattttccagGAAATGCA Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCCGCACTGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgtgggactctttgtattttccagGAAATGCA Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCCGCACTGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgtgggactctttgtattttccagGAAATGCA Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG------------------------------------------GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCCGCACTGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGGTGAGATCAAGTTTGATTTGTGGGACTCTTTGTATTTTCCAGGAAATGCA #### Pdcd11_ID10111_5 --> 0 - 1 Original Alignment CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGA-GCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAg catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGACGCCTTTC-ATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAggtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from CESAR CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAg catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGACGCCTTTCATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAggtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Spaln_aa2Genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGACGCCTTTCATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Spaln_nt2Genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGA-GCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGACGCCTTTC-ATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Pairagon CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTC--------------------ACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGG--------------------CACAACTAGACGCCTTTCATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Exonerate_protein2genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGACGCCTTTCATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Exonerate_coding2genome catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagctcctgacaggaacagtttctagcctcgaagaccatggctaccttgtgagaattggagttggcacaactagacgcctttcattactgaagaaggcacaagcgtacactcgacagaagaacaaaggtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from GeneWise CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGACGCCTTTCATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat #### Pdcd11_ID10112_6 --> 2 - 0 Original Alignment gtGCTAAGTTCAAAGTCGGCCAGTACCTGACCTGTGTGGTTGAAGAGGTGAAAAGCAACGGAGGAGTTGTGAGTCTCTCTGTAGAGCACTCCGAGGTTTCCTCTGCCTTCGCAACTGAGGAGCAAAGCTGG-AACCTGAATAACTTACTACCAGGGCTGCTGGTCAAAGCCCAGGTGCAGAAG gccagtgggtcggcagctggtgacaccatatgcatataattgaaatgaaggtGCCAAGTTTAAAGTTGGCCAATATCTAACTTGTGTAGTAAAGGAGGTGAAGAGTAATGGTGCTGTTGTGAGCCTCTCTGTGGATCGCTCTGTGATCTCATTAGTCTTTACAACAGAAGTCCAAAGCTGGCAACCTCA-TAACTTATTACCAGGATTACTTGTTAAAGCCCAAGTACAAAAGgtaaggtcccaactaatgaatgggaaatgggagaggagagagtagagtca Alignment from CESAR gtGCTAAGTTCAAAGTCGGCCAGTACCTGACCTGTGTGGTTGAAGAGGTGAAAAGCAACGGAGGAGTTGTGAGTCTCTCTGTAGAGCACTCCGAGGTTTCCTCTGCCTTCGCAACTGAGGAGCAAAGCTGGAACCTGAATAACTTACTACCAGGGCTGCTGGTCAAAGCCCAGGTGCAGAAG gccagtgggtcggcagctggtgacaccatatgcatataattgaaatgaaggtGCCAAGTTTAAAGTTGGCCAATATCTAACTTGTGTAGTAAAGGAGGTGAAGAGTAATGGTGCTGTTGTGAGCCTCTCTGTGGATCGCTCTGTGATCTCATTAGTCTTTACAACAGAAGTCCAAAGCTGGCAACCTCATAACTTATTACCAGGATTACTTGTTAAAGCCCAAGTACAAAAGgtaaggtcccaactaatgaatgggaaatgggagaggagagagtagagtca Alignment from Spaln_aa2Genome GTGCTAAGTTCAAAGTCGGCCAGTACCTGACCTGTGTGGTTGAAGAGGTGAAAAGCAACGGAGGAGTTGTGAGTCTCTCTGTAGAGCACTCCGAGGTTTCCTCTGCCTTCGCAACTGAGGAGCAAAGCTGGAACCTGAATAACTTACTACCAGGGCTGCTGGTCAAAGCCCAGGTGCAGAAG gccagtgggtcggcagctggtgacaccatatgcatataattgaaatgaagGTGCCAAGTTTAAAGTTGGCCAATATCTAACTTGTGTAGTAAAGGAGGTGAAGAGTAATGGTGCTGTTGTGAGCCTCTCTGTGGATCGCTCTGTGATCTCATTAGTCTTTACAACAGAAGTCCAAAGCTGGCAACCTCATAACTTATTACCAGGATTACTTGTTAAAGCCCAAGTACAAAAGgtaaggtcccaactaatgaatgggaaatgggagaggagagagtagagtca Alignment from Spaln_nt2Genome GTGCTAAGTTCAAAGTCGGCCAGTACCTGACCTGTGTGGTTGAAGAGGTGAAAAGCAACGGAGGAGTTGTGAGTCTCTCTGTAGAGCACTCCGAGGTTTCCTCTGCCTTCGCAACTGAGGAGCAAAGCTGGAACCTGAATAACTTACTACCAGGGCTGCTGGTCAAAGCCCAGGTGCAGAAG gccagtgggtcggcagctggtgacaccatatgcatataattgaaatgaagGTGCCAAGTTTAAAGTTGGCCAATATCTAACTTGTGTAGTAAAGGAGGTGAAGAGTAATGGTGCTGTTGTGAGCCTCTCTGTGGATCGCTCTGTGATCTCATTAGTCTTTACAACAGAAGTCCAAAGCTGGCAACCTCATAACTTATTACCAGGATTACTTGTTAAAGCCCAAGTACAAAAGgtaaggtcccaactaatgaatgggaaatgggagaggagagagtagagtca Alignment from Pairagon GTGCTAAGTTCAAAGTCGGCCAGTACCTGACCTGTGTGGTTGAAGAGGTGAAAAGCAACGGAGGAGTTGTGAGTCTCTCTGTAGAGCACTCCGAGGTTTCCTCTGCCTTCGCAACTGAGGAGCAAAGCTGGAACCTGAATAACTTACTACCAGGGCTGCTGGTCAAAGCCCAGGTGCAGAAG gccagtgggtcggcagctggtgacaccatatgcatataattgaaatgaagGTGCCAAGTTTAAAGTTGGCCAATATCTAACTTGTGTAGTAAAGGAGGTGAAGAGTAATGGTGCTGTTGTGAGCCTCTCTGTGGATCGCTCTGTGATCTCATTAGTCTTTACAACAGAAGTCCAAAGCTGGCAACCTCATAACTTATTACCAGGATTACTTGTTAAAGCCCAAGTACAAAAGgtaaggtcccaactaatgaatgggaaatgggagaggagagagtagagtca Alignment from Exonerate_protein2genome GTGCTAAGTTCAAAGTCGGCCAGTACCTGACCTGTGTGGTTGAAGAGGTGAAAAGCAACGGAGGAGTTGTGAGTCTCTCTGTAGAGCACTCCGAGGTTTCCTCTGCCTTCGCAACTGAGGAGCAAAGCTGGAACCTGAATAACTTACTACCAGGGCTGCTGGTCAAAGCCCAGGTGCAGAAG gccagtgggtcggcagctggtgacaccatatgcatataattgaaatgaagGTGCCAAGTTTAAAGTTGGCCAATATCTAACTTGTGTAGTAAAGGAGGTGAAGAGTAATGGTGCTGTTGTGAGCCTCTCTGTGGATCGCTCTGTGATCTCATTAGTCTTTACAACAGAAGTCCAAAGCTGGCAACCTCATAACTTATTACCAGGATTACTTGTTAAAGCCCAAGTACAAAAGgtaaggtcccaactaatgaatgggaaatgggagaggagagagtagagtca Alignment from Exonerate_coding2genome gccagtgggtcggcagctggtgacaccatatgcatataattgaaatgaaggtgccaagtttaaagttggccaatatctaacttgtgtagtaaaggaggtgaagagtaatggtgctgttgtgagcctctctgtggatcgctctgtgatctcattagtctttacaacagaagtccaaagctggcaacctcataacttattaccaggattacttgttaaagcccaagtacaaaaggtaaggtcccaactaatgaatgggaaatgggagaggagagagtagagtca Alignment from GeneWise GTGCTAAGTTCAAAGTCGGCCAGTACCTGACCTGTGTGGTTGAAGAGGTGAAAAGCAACGGAGGAGTTGTGAGTCTCTCTGTAGAGCACTCCGAGGTTTCCTCTGCCTTCGCAACTGAGGAGCAAAGCTGGAACCTGAATAACTTACTACCAGGGCTGCTGGTCAAAGCCCAGGTGCAGAAG gccagtgggtcggcagctggtgacaccatatgcatataattgaaatgaagGTGCCAAGTTTAAAGTTGGCCAATATCTAACTTGTGTAGTAAAGGAGGTGAAGAGTAATGGTGCTGTTGTGAGCCTCTCTGTGGATCGCTCTGTGATCTCATTAGTCTTTACAACAGAAGTCCAAAGCTGGCAACCTCATAACTTATTACCAGGATTACTTGTTAAAGCCCAAGTACAAAAGgtaaggtcccaactaatgaatgggaaatgggagaggagagagtagagtca #### Pdcd11_ID10115_9 --> 0 - 2 Original Alignment GTCAGCCATCTCTCTGATTCT-AAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGaa tcaaatgaacaaaagaacagctctactccattttgtttgtaacttggcagGTAAGCCATCTCTCTGATTCTCAAAAAAG-GTTCAATGCCGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTTTAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGaagtgggtactatctaccacacatgtgcatgtgctagttgcagtgtctttaa Alignment from CESAR GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGaa tcaaatgaacaaaagaacagctctactccattttgtttgtaacttggcagGTAAGCCATCTCTCTGATTCTCAAAAAAGGTTCAATGCCGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTTTAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGaagtgggtactatctaccacacatgtgcatgtgctagttgcagtgtctttaa Alignment from Spaln_aa2Genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA tcaaatgaacaaaagaacagctctactccattttgtttgtaacttggcagGTAAGCCATCTCTCTGATTCTCAAAAAAGGTTCAATGCCGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTTTAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtgggtactatctaccacacatgtgcatgtgctagttgcagtgtctttaa Alignment from Spaln_nt2Genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA tcaaatgaacaaaagaacagctctactccattttgtttgtaacttggcagGTAAGCCATCTCTCTGATTCTCAAAAAAGGTTCAATGCCGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTTTAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtgggtactatctaccacacatgtgcatgtgctagttgcagtgtctttaa Alignment from Pairagon GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA tcaaatgaacaaaagaacagctctactccattttgtttgtaacttggcagGTAAGCCATCTCTCTGATTCTCAAAAAAGGTTCAATGCCGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTTTAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtgggtactatctaccacacatgtgcatgtgctagttgcagtgtctttaa Alignment from Exonerate_protein2genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA tcaaatgaacaaaagaacagctctactccattttgtttgtaacttggcagGTAAGCCATCTCTCTGATTCTCAAAAAAGGTTCAATGCCGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTTTAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtgggtactatctaccacacatgtgcatgtgctagttgcagtgtctttaa Alignment from Exonerate_coding2genome tcaaatgaacaaaagaacagctctactccattttgtttgtaacttggcaggtaagccatctctctgattctcaaaaaaggttcaatgccgaggccctgaaaccagggagcactcatgagtgtaggatcattgactttagccagatggatgagctggccctgctctcactgcggaagtgggtactatctaccacacatgtgcatgtgctagttgcagtgtctttaa Alignment from GeneWise GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA tcaaatgaacaaaagaacagctctactccattttgtttgtaacttggcagGTAAGCCATCTCTCTGATTCTCAAAAAAGGTTCAATGCCGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTTTAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtgggtactatctaccacacatgtgcatgtgctagttgcagtgtctttaa #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCA-GCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG tgttgggcctacatcaagaccactgtagtcttttattttctatttcctagaTCAATTATCGCACGCTCCATTTC-TAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgtattcaattttcttttcagaaacagatttgcagttagtcttcatg Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG tgttgggcctacatcaagaccactgtagtcttttattttctatttcctagaTCAATTATCGCACGCTCCATTTCTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgtattcaattttcttttcagaaacagatttgcagttagtcttcatg Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG tgttgggcctacatcaagaccactgtagtcttttattttctatttcctagATCAATTATCGCACGCTCCATTTCTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgtattcaattttcttttcagaaacagatttgcagttagtcttcatg Alignment from Spaln_nt2Genome ATCAATTATTGCA-GCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG tgttgggcctacatcaagaccactgtagtcttttattttctatttcctagATCAATTATCGCACGCTCCATTTC-TAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgtattcaattttcttttcagaaacagatttgcagttagtcttcatg Alignment from Pairagon ATCAATTATTGCA-GCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG tgttgggcctacatcaagaccactgtagtcttttattttctatttcctagATCAATTATCGCACGCTCCATTTC-TAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgtattcaattttcttttcagaaacagatttgcagttagtcttcatg Alignment from Exonerate_protein2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG tgttgggcctacatcaagaccactgtagtcttttattttctatttcctagATCAATTATCGCACGCTCCATTTCTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgtattcaattttcttttcagaaacagatttgcagttagtcttcatg Alignment from Exonerate_coding2genome tgttgggcctacatcaagaccactgtagtcttttattttctatttcctagatcaattatcgcacgctccatttctagatatcatgacatcaaaattggaacagtagtaaaggtatgtattcaattttcttttcagaaacagatttgcagttagtcttcatg Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG tgttgggcctacatcaagaccactgtagtcttttattttctatttcctagATCAATTATCGCACGCTCCATTTCTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgtattcaattttcttttcagaaacagatttgcagttagtcttcatg #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCC-CGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag gcttttctgaataggtgccattatccaacaatggctgtccctttctacagAAAAAGAAGGGCAAAAAAGAAAGGGCACTGGAGAAGCAAAAATTGAAGAAAGAGCTGTCGCGCATTGAAAAGGCACTAATGGACCCTTGGCGACAACCAGAGTCTGCTGACGTATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACAACAGAGATTGAGCGGGCCCCGGG-TGTCGCTGAGAGGGCTTTGAAGACCATCGCATTCcggtaggaggtccaggccttctgcagtccaaaaggatgaggacttctcagct Alignment from CESAR AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag gcttttctgaataggtgccattatccaacaatggctgtccctttctacagAAAAAGAAGGGCAAAAAAGAAAGGGCACTGGAGAAGCAAAAATTGAAGAAAGAGCTGTCGCGCATTGAAAAGGCACTAATGGACCCTTGGCGACAACCAGAGTCTGCTGACGTATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACAACAGAGATTGAGCGGGCCCCGGGTGTCGCTGAGAGGGCTTTGAAGACCATCGCATTCcggtaggaggtccaggccttctgcagtccaaaaggatgaggacttctcagct Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG gcttttctgaataggtgccattatccaacaatggctgtccctttctacagAAAAAGAAGGGCAAAAAAGAAAGGGCACTGGAGAAGCAAAAATTGAAGAAAGAGCTGTCGCGCATTGAAAAGGCACTAATGGACCCTTGGCGACAACCAGAGTCTGCTGACGTATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACAACAGAGATTGAGCGGGCCCCGGGTGTCGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtaggaggtccaggccttctgcagtccaaaaggatgaggacttctcagct Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG gcttttctgaataggtgccattatccaacaatggctgtccctttctacagAAAAAGAAGGGCAAAAAAGAAAGGGCACTGGAGAAGCAAAAATTGAAGAAAGAGCTGTCGCGCATTGAAAAGGCACTAATGGACCCTTGGCGACAACCAGAGTCTGCTGACGTATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACAACAGAGATTGAGCGGGCCCCGGGTGTCGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtaggaggtccaggccttctgcagtccaaaaggatgaggacttctcagct Alignment from Pairagon AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG gcttttctgaataggtgccattatccaacaatggctgtccctttctacagAAAAAGAAGGGCAAAAAAGAAAGGGCACTGGAGAAGCAAAAATTGAAGAAAGAGCTGTCGCGCATTGAAAAGGCACTAATGGACCCTTGGCGACAACCAGAGTCTGCTGACGTATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACAACAGAGATTGAGCGGGCCCCGGGTGTCGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtaggaggtccaggccttctgcagtccaaaaggatgaggacttctcagct Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG gcttttctgaataggtgccattatccaacaatggctgtccctttctacagAAAAAGAAGGGCAAAAAAGAAAGGGCACTGGAGAAGCAAAAATTGAAGAAAGAGCTGTCGCGCATTGAAAAGGCACTAATGGACCCTTGGCGACAACCAGAGTCTGCTGACGTATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACAACAGAGATTGAGCGGGCCCCGGGTGTCGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtaggaggtccaggccttctgcagtccaaaaggatgaggacttctcagct Alignment from Exonerate_coding2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG gcttttctgaataggtgccattatccaacaatggctgtccctttctacagAAAAAGAAGGGCAAAAAAGAAAGGGCACTGGAGAAGCAAAAATTGAAGAAAGAGCTGTCGCGCATTGAAAAGGCACTAATGGACCCTTGGCGACAACCAGAGTCTGCTGACGTATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACAACAGAGATTGAGCGGGCCCCGGGTGTCGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtaggaggtccaggccttctgcagtccaaaaggatgaggacttctcagct Alignment from GeneWise AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG gcttttctgaataggtgccattatccaacaatggctgtccctttctacagAAAAAGAAGGGCAAAAAAGAAAGGGCACTGGAGAAGCAAAAATTGAAGAAAGAGCTGTCGCGCATTGAAAAGGCACTAATGGACCCTTGGCGACAACCAGAGTCTGCTGACGTATCTGACCAGCTGGTGCTAAGTTTCCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACAACAGAGATTGAGCGGGCCCCGGGTGTCGCTGAGAGGGCTTTGAAGACCATCGCATTCCGgtaggaggtccaggccttctgcagtccaaaaggatgaggacttctcagct #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAG-TCTTCTACTATTACCATAGACCAAATGAAAAGA gacctaatattttgtgagtagctccagttgattggtgctcttgctctcagGCCATTGTGATAGTGTTAGAGTCAAGTGGTGAGAGTGCATTTAAAATGATCTTAGACTTACTTAAGTCTCTGTGGAAGCTCCTCTACAA-TACTATAGACCAAATGAAACGAgtgagtacacgcagatgaggacaacaggttactgcactgaaatacatcct Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gacctaatattttgtgagtagctccagttgattggtgctcttgctctcagGCCATTGTGATAGTGTTAGAGTCAAGTGGTGAGAGTGCATTTAAAATGATCTTAGACTTACTTAAGTCTCTGTGGAAGCTCCTCTACAATACTATAGACCAAATGAAACGAgtgagtacacgcagatgaggacaacaggttactgcactgaaatacatcct Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gacctaatattttgtgagtagctccagttgattggtgctcttgctctcagGCCATTGTGATAGTGTTAGAGTCAAGTGGTGAGAGTGCATTTAAAATGATCTTAGACTTACTTAAGTCTCTGTGGAAGCTCCTCTACAATACTATAGACCAAATGAAACGAgtgagtacacgcagatgaggacaacaggttactgcactgaaatacatcct Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gacctaatattttgtgagtagctccagttgattggtgctcttgctctcagGCCATTGTGATAGTGTTAGAGTCAAGTGGTGAGAGTGCATTTAAAATGATCTTAGACTTACTTAAGTCTCTGTGGAAGCTCCTCTACAATACTATAGACCAAATGAAACGAgtgagtacacgcagatgaggacaacaggttactgcactgaaatacatcct Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAG-TCTTCTACTATTACCATAGACCAAATGAAAAGA gacctaatattttgtgagtagctccagttgattggtgctcttgctctcagGCCATTGTGATAGTGTTAGAGTCAAGTGGTGAGAGTGCATTTAAAATGATCTTAGACTTACTTAAGTCTCTGTGGAAGCTCCTCTAC-AATACTATAGACCAAATGAAACGAgtgagtacacgcagatgaggacaacaggttactgcactgaaatacatcct Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gacctaatattttgtgagtagctccagttgattggtgctcttgctctcagGCCATTGTGATAGTGTTAGAGTCAAGTGGTGAGAGTGCATTTAAAATGATCTTAGACTTACTTAAGTCTCTGTGGAAGCTCCTCTACAATACTATAGACCAAATGAAACGAgtgagtacacgcagatgaggacaacaggttactgcactgaaatacatcct Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gacctaatattttgtgagtagctccagttgattggtgctcttgctctcagGCCATTGTGATAGTGTTAGAGTCAAGTGGTGAGAGTGCATTTAAAATGATCTTAGACTTACTTAAGTCTCTGTGGAAGCTCCTCTACAATACTATAGACCAAATGAAACGAgtgagtacacgcagatgaggacaacaggttactgcactgaaatacatcct Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gacctaatattttgtgagtagctccagttgattggtgctcttgctctcagGCCATTGTGATAGTGTTAGAGTCAAGTGGTGAGAGTGCATTTAAAATGATCTTAGACTTACTTAAGTCTCTGTGGAAGCTCCTCTACAATACTATAGACCAAATGAAACGAgtgagtacacgcagatgaggacaacaggttactgcactgaaatacatcct #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAAC-GTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagttaccatgaacagtctgtgcttcatccatagATACTTACAAAGTGGATGTACACTGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGACATGGGTCAAATCGTGGGGT-TACAATATCTCCCCTGTTAATGgtaagtgctgtggaaagcttggatgctctcttcctactaaatgccagaaa Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagttaccatgaacagtctgtgcttcatccatagATACTTACAAAGTGGATGTACACTGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGACATGGGTCAAATCGTGGGGTTACAATATCTCCCCTGTTAATGgtaagtgctgtggaaagcttggatgctctcttcctactaaatgccagaaa Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagttaccatgaacagtctgtgcttcatccatagATACTTACAAAGTGGATGTACACTGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGACATGGGTCAAATCGTGGGGTTACAATATCTCCCCTGTTAATGgtaagtgctgtggaaagcttggatgctctcttcctactaaatgccagaaa Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAA-CGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagttaccatgaacagtctgtgcttcatccatagATACTTACAAAGTGGATGTACACTGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGACATGGGTCAAATCGTGGGG-TTACAATATCTCCCCTGTTAATGgtaagtgctgtggaaagcttggatgctctcttcctactaaatgccagaaa Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAA-CGTGGGGCAGACCATGTTCACTT-------------TGTTAATG ctctttaatgttggagtagttaccatgaacagtctgtgcttcatccatagATACTTACAAAGTGGATGTACACTGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGACATGGGTCAAATCGTGGGG--------------TTACAATATCTCCCCTGTTAATGgtaagtgctgtggaaagcttggatgctctcttcctactaaatgccagaaa Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagttaccatgaacagtctgtgcttcatccatagATACTTACAAAGTGGATGTACACTGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGACATGGGTCAAATCGTGGGGTTACAATATCTCCCCTGTTAATGgtaagtgctgtggaaagcttggatgctctcttcctactaaatgccagaaa Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagttaccatgaacagtctgtgcttcatccatagATACTTACAAAGTGGATGTACACTGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGACATGGGTCAAATCGTGGGGTTACAATATCTCCCCTGTTAATGgtaagtgctgtggaaagcttggatgctctcttcctactaaatgccagaaa Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagttaccatgaacagtctgtgcttcatccatagATACTTACAAAGTGGATGTACACTGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGACATGGGTCAAATCGTGGGGTTACAATATCTCCCCTGTTAATGgtaagtgctgtggaaagcttggatgctctcttcctactaaatgccagaaa #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TGGTGACGGCGAG TACTTCCTCAAGTGTGACACCATC-AAC------ACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG TGGTGATGGTCAGgtgagtgactctagcgatttggcctttcctcacacagTATTTTCTAAAGTGTGAT---GTCCAACTTCA-CTGCTTGCCAGATACTGTA---------------TTCACATGCCTAGTACCAGCTAGTACCTACATTCGAAAGgtacaataggcaggagtcattaactaacttatattgcttaggttttaatg Alignment from CESAR TGGTGACGGCGAG TACTTCCTCAAGTGTGACACC---ATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG TGGTGATGGTCAGgttagtgactctagcgatttggcctttcctcacacagTATTTTCTAAAGTGTGATGTCCAACTTCACTGCTTGCCAGATACTGTATTC---------------ACATGCCTAGTACCAGCTAGTACCTACATTCGAAAGgtacaataggcaggagtcattaactaacttatattgcttaggttttaatg Alignment from Spaln_aa2Genome TGGTGACGGCGAG TACTTCCTCAAGTGTGACACC---ATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG TGGTGATGGTCAGgtgagtgactctagcgatttggcctttcctcacacagTATTTTCTAAAGTGTGATGTCCAACTTCACTGCTTGCCAGATACTGTATTC---------------ACATGCCTAGTACCAGCTAGTACCTACATTCGAAAGgtacaataggcaggagtcattaactaacttatattgcttaggttttaatg Alignment from Spaln_nt2Genome TGGTGACGGCGAG TACTTCCTCAAGTGTGACA-CCATCAACAC--CCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG TGGTGATGGTCAGgtgagtgactctagcgatttggcctttcctcacacagTATTTTCTAAAGTGTGATGTCCAACTTCACTGCTTGCCAGATACTGTATTC---------------ACATGCCTAGTACCAGCTAGTACCTACATTCGAAAGgtacaataggcaggagtcattaactaacttatattgcttaggttttaatg Alignment from Pairagon TGGTGACGGCGAG TACTTCCTCAAGTGTGACACCATCAACACCCT-----------------GCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG TGGTGATGGTCAGgtgagtgactctagcgatttggcctttcctcacacagTATTTTCTAAAGTGTGA--------------TGTCCAACTTCACTGCTTGCCAGATACTGTATTC---------------ACATGCCTAGTACCAGCTAGTACCTACATTCGAAAGgtacaataggcaggagtcattaactaacttatattgcttaggttttaatg Alignment from Exonerate_protein2genome TGGTGACGGCGAG TACTTCCTCAAGTGTGACACC---ATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG TGGTGATGGTCAGgtgagtgactctagcgatttggcctttcctcacacagTATTTTCTAAAGTGTGATGTCCAACTTCACTGCTTGCCAGATACTGTATTC---------------ACATGCCTAGTACCAGCTAGTACCTACATTCGAAAGgtacaataggcaggagtcattaactaacttatattgcttaggttttaatg Alignment from Exonerate_coding2genome TGGTGACGGCGAG TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCA TGGTGATGGTCAGgtgagtgactctagcgatttggcctttcctcacacagtattttctaaagtgtgatgtccaacttcactgcttgccagatactgtattcacatgcctagtaccagctagtacctacattcgaaAGGTACAATAGGCAGGAGTCATTAACTAACTTATATTGCTTAGGTTTTAATG Alignment from GeneWise TGGTGACGGCGAG TACTTCCTCAAGTGTGACACC---ATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG TGGTGATGGTCAGgtgagtgactctagcgatttggcctttcctcacacagTATTTTCTAAAGTGTGATGTCCAACTTCACTGCTTGCCAGATACTGTATTCACATGC---------------CTAGTACCAGCTAGTACCTACATTCGAAAGgtacaataggcaggagtcattaactaacttatattgcttaggttttaatg #### Pga5_ID2971_7 --> 1 - 0 Original Alignment cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATG-GACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAAGT acccagactgaagagtgtgttttagcctaacaatcttctatctctattagcAATGCCATGAATGGGGGGGCCATTGCATTGGATGGTAGCTGTCAAGGCATTATGCGATACAG-GGCTTCTTTGCTAACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgttagtgactctagcaatcctccttttcattgtgtagTATTTTCTAAAGT Alignment from CESAR cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAAGT acccagactgaagagtgtgttttagcctaacaatcttctatctctattagcAATGCCATGAATGGGGGGGCCATTGCATTGGATGGTAGCTGTCAAGGCATTATGCGATACAGGGCTTCTTTGCTAACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgttagtgactctagcgatttggcctttcctcacacagTATTTTCTAAAGT Alignment from Spaln_aa2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAAGT acccagactgaagagtgtgttttagcctaacaatcttctatctctattagCAATGCCATGAATGGGGGGGCCATTGCATTGGATGGTAGCTGTCAAGGCATTATGCGATACAGGGCTTCTTTGCTAACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgttagtgactctagcaatcctccttttcattgtgtagTATTTTCTAAAGT Alignment from Spaln_nt2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAAGT acccagactgaagagtgtgttttagcctaacaatcttctatctctattagCAATGCCATGAATGGGGGGGCCATTGCATTGGATGGTAGCTGTCAAGGCATTATGCGATACAGGGCTTCTTTGCTAACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgttagtgactctagcaatcctccttttcattgtgtagTATTTTCTAAAGT Alignment from Pairagon CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATG-GACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAAGT acccagactgaagagtgtgttttagcctaacaatcttctatctctattagCAATGCCATGAATGGGGGGGCCATTGCATTGGATGGTAGCTGTCAAGGCATTATGCGATACAGGG-CTTCTTTGCTAACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgttagtgactctagcaatcctccttttcattgtgtagTATTTTCTAAAGT Alignment from Exonerate_protein2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAAGT acccagactgaagagtgtgttttagcctaacaatcttctatctctattagCAATGCCATGAATGGGGGGGCCATTGCATTGGATGGTAGCTGTCAAGGCATTATGCGATACAGGGCTTCTTTGCTAACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgttagtgactctagcaatcctccttttcattgtgtagTATTTTCTAAAGT Alignment from Exonerate_coding2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG acccagactgaagagtgtgttttagcctaacaatcttctatctctattagCAATGCCATGAATGGGGGGGCCATTGCATTGGATGGTAGCTGTCAAGGCATTATGCGATACAGGGCTTCTTTGCTAACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgttagtgactctagcaatcctccttttcattgtgtagtattttctaaagt Alignment from GeneWise CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAAGT acccagactgaagagtgtgttttagcctaacaatcttctatctctattagCAATGCCATGAATGGGGGGGCCATTGCATTGGATGGTAGCTGTCAAGGCATTATGCGATACAGGGCTTCTTTGCTAACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGATGGTCAGgttagtgactctagcaatcctccttttcattgtgtagTATTTTCTAAAGT #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTAC-TTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg ccatatactgcagaccctcaagcctgacacctcacctcatactctcttaggTACACCTGCCCCTTCATTGAGAAGTTCTCAATTGAAATCGAGGCCTACTACCTTGTCTG-TGGGGGTCAGCAACTTAATGTCCTCAAC---AGTGGGGCTGAGAGAAGACAGCAAATTGTTggtaagttcttacatgcaatgtcttatatgatttaagctgaggtctttcat Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg ccatatactgcagaccctcaagcctgacacctcacctcatactctcttaggTACACCTGCCCCTTCATTGAGAAGTTCTCAATTGAAATCGAGGCCTACTACCTTGTCTGTGGGGGTCAGCAACTTAATGTCCTCAAC---AGTGGGGCTGAGAGAAGACAGCAAATTGTTggtaagttcttacatgcaatgtcttatatgatttaagctgaggtctttcat Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccatatactgcagaccctcaagcctgacacctcacctcatactctcttagGTACACCTGCCCCTTCATTGAGAAGTTCTCAATTGAAATCGAGGCCTACTACCTTGTCTGTGGGGGTCAGCAACTTAATGTCCTCAAC---AGTGGGGCTGAGAGAAGACAGCAAATTGTTGgtaagttcttacatgcaatgtcttatatgatttaagctgaggtctttcat Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccatatactgcagaccctcaagcctgacacctcacctcatactctcttagGTACACCTGCCCCTTCATTGAGAAGTTCTCAATTGAAATCGAGGCCTACTACCTTGTCTGTGGGGGTCAGCAACTTAATGTCCTCAAC---AGTGGGGCTGAGAGAAGACAGCAAATTGTTGgtaagttcttacatgcaatgtcttatatgatttaagctgaggtctttcat Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTA-CTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccatatactgcagaccctcaagcctgacacctcacctcatactctcttagGTACACCTGCCCCTTCATTGAGAAGTTCTCAATTGAAATCGAGGCCTACTACCTTGTCTG-TGGGGGTCAGCAACTTAATGTCCTCAAC---AGTGGGGCTGAGAGAAGACAGCAAATTGTTGgtaagttcttacatgcaatgtcttatatgatttaagctgaggtctttcat Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccatatactgcagaccctcaagcctgacacctcacctcatactctcttagGTACACCTGCCCCTTCATTGAGAAGTTCTCAATTGAAATCGAGGCCTACTACCTTGTCTGTGGGGGTCAGCAACTTAATGTCCTCAAC---AGTGGGGCTGAGAGAAGACAGCAAATTGTTGgtaagttcttacatgcaatgtcttatatgatttaagctgaggtctttcat Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccatatactgcagaccctcaagcctgacacctcacctcatactctcttagGTACACCTGCCCCTTCATTGAGAAGTTCTCAATTGAAATCGAGGCCTACTACCTTGTCTGTGGGGGTCAGCAACTTAATGTCCTCAAC---AGTGGGGCTGAGAGAAGACAGCAAATTGTTGgtaagttcttacatgcaatgtcttatatgatttaagctgaggtctttcat Alignment from GeneWise GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccatatactgcagaccctcaagcctgacacctcacctcatactctcttagGTACACCTGCCCCTTCATTGAGAAGTTCTCAATTGAAATCGAGGCCTACTACCTTGTCTGTGGGGGTCAGCAACTTAATGTCCTCAAC---AGTGGGGCTGAGAGAAGACAGCAAATTGTTGgtaagttcttacatgcaatgtcttatatgatttaagctgaggtctttcat #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAAC-AGCTCCGAGGAAGAATTCTTTGATGCCCATg aatatgggggtgagcatctttttaacatctttgcacattatgtatttcaggtTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGAATATAGCCCGGGACACCAAAAATCAGCTCAG-GGAAGACTTCTTTGATCCCCATggtaagtaagaaaggtaaaatgtaaagaatcctgtgattggtgggtgacat Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg aatatgggggtgagcatctttttaacatctttgcacattatgtatttcaggtTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGAATATAGCCCGGGACACCAAAAATCAGCTCAGGGAAGACTTCTTTGATCCCCATggtaagtaagaaaggtaaaatgtaaagaatcctgtgattggtgggtgacat Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctttgcacattatgtatttcagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGAATATAGCCCGGGACACCAAAAATCAGCTCAGGGAAGACTTCTTTGATCCCCATGgtaagtaagaaaggtaaaatgtaaagaatcctgtgattggtgggtgacat Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctttgcacattatgtatttcagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGAATATAGCCCGGGACACCAAAAATCAGCTCAGGGAAGACTTCTTTGATCCCCATGgtaagtaagaaaggtaaaatgtaaagaatcctgtgattggtgggtgacat Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAA-CAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctttgcacattatgtatttcagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGAATATAGCCCGGGACACCAAAAATCAGCTCAG-GGAAGACTTCTTTGATCCCCATGgtaagtaagaaaggtaaaatgtaaagaatcctgtgattggtgggtgacat Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctttgcacattatgtatttcagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGAATATAGCCCGGGACACCAAAAATCAGCTCAGGGAAGACTTCTTTGATCCCCATGgtaagtaagaaaggtaaaatgtaaagaatcctgtgattggtgggtgacat Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctttgcacattatgtatttcagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGAATATAGCCCGGGACACCAAAAATCAGCTCAGGGAAGACTTCTTTGATCCCCATGgtaagtaagaaaggtaaaatgtaaagaatcctgtgattggtgggtgacat Alignment from GeneWise GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG aatatgggggtgagcatctttttaacatctttgcacattatgtatttcagGTTGTGTATCTCCACAGAGTTTGTCCGAATGGCACATGCAGAATATAGCCCGGGACACCAAAAATCAGCTCAGGGAAGACTTCTTTGATCCCCATGgtaagtaagaaaggtaaaatgtaaagaatcctgtgattggtgggtgacat #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTG-AGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa atcaggtggggtcaacatatgctcttcttgattttttttttttttcctagGGACTGGATGGGGCAGGGGACCTAATTGTCGAGGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGTCCTGGTGACACCAATTCTAAGCAAGCTGATGTCCAAACTCTGCAGCA-TGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACACGTAGCACTACGGTTGATACCCTGTCCGTCC---TGTGAAGCAGCTTATGCACTTGTCTCCaagtgagagcggagaggaatagtaaatacacataaataaagtaagtaatgat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa atcaggtggggtcaacatatgctcttcttgattttttttttttttcctagGGACTGGATGGGGCAGGGGACCTAATTGTCGAGGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGTCCTGGTGACACCAATTCTAAGCAAGCTGATGTCCAAACTCTGCAGCATGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACACGTAGCACTACGGTTGATACCCTGTCCGTCC---TGTGAAGCAGCTTATGCACTTGTCTCCaagtgagagcggagaggaatagtaaatacacataaataaagtaagtaatgat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA atcaggtggggtcaacatatgctcttcttgattttttttttttttcctagGGACTGGATGGGGCAGGGGACCTAATTGTCGAGGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGTCCTGGTGACACCAATTCTAAGCAAGCTGATGTCCAAACTCTGCAGCATGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACACGTAGCACTACGGTTGATACCCTGTCCGTCC---TGTGAAGCAGCTTATGCACTTGTCTCCAAgtgagagcggagaggaatagtaaatacacataaataaagtaagtaatgat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTG-AGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA atcaggtggggtcaacatatgctcttcttgattttttttttttttcctagGGACTGGATGGGGCAGGGGACCTAATTGTCGAGGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGTCCTGGTGACACCAATTCTAAGCAAGCTGATGTCCAAACTCTGCAGCA-TGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACACGTAGCACTACGGTTGATACCCTGTCCGTCC---TGTGAAGCAGCTTATGCACTTGTCTCCAAgtgagagcggagaggaatagtaaatacacataaataaagtaagtaatgat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTG-AGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA atcaggtggggtcaacatatgctcttcttgattttttttttttttcctagGGACTGGATGGGGCAGGGGACCTAATTGTCGAGGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGTCCTGGTGACACCAATTCTAAGCAAGCTGATGTCCAAACTCTGCAGCAT-GCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACACGTAGCACTACGGTTGATACCCTGTCCGTCC---TGTGAAGCAGCTTATGCACTTGTCTCCAAgtgagagcggagaggaatagtaaatacacataaataaagtaagtaatgat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA atcaggtggggtcaacatatgctcttcttgattttttttttttttcctagGGACTGGATGGGGCAGGGGACCTAATTGTCGAGGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGTCCTGGTGACACCAATTCTAAGCAAGCTGATGTCCAAACTCTGCAGCATGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACACGTAGCACTACGGTTGATACCCTGTCCGTCC---TGTGAAGCAGCTTATGCACTTGTCTCCAAgtgagagcggagaggaatagtaaatacacataaataaagtaagtaatgat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA atcaggtggggtcaacatatgctcttcttgattttttttttttttcctagGGACTGGATGGGGCAGGGGACCTAATTGTCGAGGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGTCCTGGTGACACCAATTCTAAGCAAGCTGATGTCCAAACTCTGCAGCATGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACACGTAGCACTACGGTTGATACCCTGTCCGTCC---TGTGAAGCAGCTTATGCACTTGTCTCCAAgtgagagcggagaggaatagtaaatacacataaataaagtaagtaatgat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA atcaggtggggtcaacatatgctcttcttgattttttttttttttcctagGGACTGGATGGGGCAGGGGACCTAATTGTCGAGGCATGCTCTGTGCATGATCTTTTCCTCATACTGCACAGTGGTAGCATTCCAGACCCTGGTCCTGGTGACACCAATTCTAAGCAAGCTGATGTCCAAACTCTGCAGCATGCTTTTGAGGCTGTCTTTCGAGTTCATTCTCCCAAGGCCCTTGGACACGTAGCACTACGGTTGATACCCTGTCCGTCC---TGTGAAGCAGCTTATGCACTTGTCTCCAAgtgagagcggagaggaatagtaaatacacataaataaagtaagtaatgat #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCAC-GCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gaacacagttgaagctgtgctgtcgctcgagaaatgtatgtgtgttttagttCTCGACCGCTGGTGGGGAAACAAACGCATTGATTATTCTCTCTACTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATCGCAAGCTACT-GGAGTCAGCAGATGTAGTTGCCTTCATTCTACGCCAGgtatgaacaccccaggattggcctaacactgagtttagataacaggcgcc Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCAC-GCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gaacacagttgaagctgtgctgtcgctcgagaaatgtatgtgtgttttagttCTCGACCGCTGGTGGGGAAACAAACGCATTGATTATTCTCTCTACTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATCGCAAGCTACT-GGAGTCAGCAGATGTAGTTGCCTTCATTCTACGCCAGgtatgaacaccccaggattggcctaacactgagtttagataacaggcgcc Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gaacacagttgaagctgtgctgtcgctcgagaaatgtatgtgtgttttagTTCTCGACCGCTGGTGGGGAAACAAACGCATTGATTATTCTCTCTACTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATCGCAAGCTACTGGAGTCAGCAGATGTAGTTGCCTTCATTCTACGCCAGgtatgaacaccccaggattggcctaacactgagtttagataacaggcgcc Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gaacacagttgaagctgtgctgtcgctcgagaaatgtatgtgtgttttagTTCTCGACCGCTGGTGGGGAAACAAACGCATTGATTATTCTCTCTACTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATCGCAAGCTACTGGAGTCAGCAGATGTAGTTGCCTTCATTCTACGCCAGgtatgaacaccccaggattggcctaacactgagtttagataacaggcgcc Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCA-CGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gaacacagttgaagctgtgctgtcgctcgagaaatgtatgtgtgttttagTTCTCGACCGCTGGTGGGGAAACAAACGCATTGATTATTCTCTCTACTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATCGCAAGCTACT-GGAGTCAGCAGATGTAGTTGCCTTCATTCTACGCCAGgtatgaacaccccaggattggcctaacactgagtttagataacaggcgcc Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gaacacagttgaagctgtgctgtcgctcgagaaatgtatgtgtgttttagTTCTCGACCGCTGGTGGGGAAACAAACGCATTGATTATTCTCTCTACTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATCGCAAGCTACTGGAGTCAGCAGATGTAGTTGCCTTCATTCTACGCCAGgtatgaacaccccaggattggcctaacactgagtttagataacaggcgcc Alignment from Exonerate_coding2genome gaacacagttgaagctgtgctgtcgctcgagaaatgtatgtgtgttttagttctcgaccgctggtggggaaacaaacgcattgattattctctctactgcccagaagcacttacagcctttcccactgtcacactgccccacctctttcatcgcaagctactggagtcagcagatgtagttgccttcattctacgccaggtatgaacaccccaggattggcctaacactgagtttagataacaggcgcc Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gaacacagttgaagctgtgctgtcgctcgagaaatgtatgtgtgttttagTTCTCGACCGCTGGTGGGGAAACAAACGCATTGATTATTCTCTCTACTGCCCAGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATCGCAAGCTACTGGAGTCAGCAGATGTAGTTGCCTTCATTCTACGCCAGgtatgaacaccccaggattggcctaacactgagtttagataacaggcgcc #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATG-TATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ctttgctgtggatttttcatataattgtgttttgtttgttttccctgcagAATGTCACTTCTAACCACAAAGCAAGTGACACTGTGATATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGCTATGGAC-ACTGGATGTAGTTACACTCACCAGAGAAGAGgtactttctccatggtatatctaagGTTGAGGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ctttgctgtggatttttcatataattgtgttttgtttgttttccctgcagAATGTCACTTCTAACCACAAAGCAAGTGACACTGTGATATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGCTATGGACACTGGATGTAGTTACACTCACCAGAGAAGAGgtccccttttgccttatatttgcagGTTGAGGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC ctttgctgtggatttttcatataattgtgttttgtttgttttccctgcagAATGTCACTTCTAACCACAAAGCAAGTGACACTGTGATATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGCTATGGACACTGGATGTAGTTACACTCACCAGAGAAGAGGTACTTTCTCCATGGTATATCTAAgGTTGAGGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATG-TATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTGGAT-------------------------------GTCTACGTCATGACACAGC ctttgctgtggatttttcatataattgtgttttgtttgttttccctgcagAATGTCACTTCTAACCACAAAGCAAGTGACACTGTGATATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGCTATGGA-CACTGGATGTAGTTACACTCAC--CAGAGAA----GAGGTACTTTCTCCATGGTATATCTAAGGTTGAGGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATG-TATGGACCATTGGATGTGGTCACGCTCACTGGAGAG-------------------------AAGGTGGATGTCTACGTCATGACACAGC ctttgctgtggatttttcatataattgtgttttgtttgttttccctgcagAATGTCACTTCTAACCACAAAGCAAGTGACACTGTGATATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGCTATGGA-CACTGGATGTAGTTACACTCACCAGAGAAGAGGTACTTTCTCCATGGTATATCTAAGGTTGAGGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGA ctttgctgtggatttttcatataattgtgttttgtttgttttccctgcagAATGTCACTTCTAACCACAAAGCAAGTGACACTGTGATATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGCTATGGACACTGGATGTAGTTACACTCACCAGAGAAGAGgtactttctccatggtatatctaaggttgagGTC------TATGTCATGA Alignment from Exonerate_coding2genome ctttgctgtggatttttcatataattgtgttttgtttgttttccctgcagaatgtcacttctaaccacaaagcaagtgacactgtgatatgtgagggccacccgcaagtactaaatggccatttcatgctatggacactggatgtagttacactcaccagagaagaggtactttctccatggtatatctaaggttgaggtctatgtcatgacacagc Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAG---------------------------AAGGTGGATGTCTACGTCATGACACAGC ctttgctgtggatttttcatataattgtgttttgtttgttttccctgcagAATGTCACTTCTAACCACAAAGCAAGTGACACTGTGATATGTGAGGGCCACCCGCAAGTACTAAATGGCCATTTCATGCTATGGACACTGGATGTAGTTACACTCACCA--GAGAAGAGGTACTTTCTCCATGGTATATCTAAGGTTGAGGTCTATGTCATGACACAGC #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGG-ATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACCAGAGAAGAGgtaagattttgccttatatttgcagGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGCATTCATT-TGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACCAGAGAAGAGgtccccttttgccttatatttgcagGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGCATTCATTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCAGAGAAGAGGTAAGATTTTGCCTTATATTTGCAgGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGCATTCATTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Spaln_nt2Genome CACGCTCACTGGAGAGAAGGTGGAT-------------------------------GTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TACACTCAC--CAGAGAA----GAGGTAAGATTTTGCCTTATATTTGCAGGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGCATTCATTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Pairagon TGTGGTCACGCTCACTGGAGA-------------------------GAAGGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCAGAGAAGAGGTAAGATTTTGCCTTATATTTGCAGGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGCATTCATTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCAGAGAAGAGgtaagattttgccttatatttgcaggttgag------GTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGCATTCATTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Exonerate_coding2genome tgtagttacactcaccagagaagaggtaagattttgccttatatttgcaggttgaggtctatgtcatgacacagcccctgtcaggcaagtggcattcatttggcacagaggtcacaaacagttctggccatcttaccttcccagtttcatcagagcatgcactgggcattggtgtctaccctttgcacatggtggtcaggtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCAGAGAAGAGgtaagattttgccttatatttgcagGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGCATTCATTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGT-GTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag cattcctgttaaatactaacttagactgacaaggctcttatcctccacaggGGCGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCGAGTCGTCTCAA-CATGGGTAGTGACCCCAAGGTGCGAGCTGGGGCCGTAGATGTGGTGaggtacggccagacttctgtgccatgtgatgatcttctgtctgtggggaggt Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag cattcctgttaaatactaacttagactgacaaggctcttatcctccacaggGGCGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCGAGTCGTCTCAACATGGGTAGTGACCCCAAGGTGCGAGCTGGGGCCGTAGATGTGGTGaggtacggccagacttctgtgccatgtgatgatcttctgtctgtggggaggt Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgttaaatactaacttagactgacaaggctcttatcctccacagGGGCGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCGAGTCGTCTCAACATGGGTAGTGACCCCAAGGTGCGAGCTGGGGCCGTAGATGTGGTGAGgtacggccagacttctgtgccatgtgatgatcttctgtctgtggggaggt Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgttaaatactaacttagactgacaaggctcttatcctccacagGGGCGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCGAGTCGTCTCAACATGGGTAGTGACCCCAAGGTGCGAGCTGGGGCCGTAGATGTGGTGAGgtacggccagacttctgtgccatgtgatgatcttctgtctgtggggaggt Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGT-GTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgttaaatactaacttagactgacaaggctcttatcctccacagGGGCGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCGAGTCGTCTC-AACATGGGTAGTGACCCCAAGGTGCGAGCTGGGGCCGTAGATGTGGTGAGgtacggccagacttctgtgccatgtgatgatcttctgtctgtggggaggt Alignment from Exonerate_protein2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgttaaatactaacttagactgacaaggctcttatcctccacagGGGCGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCGAGTCGTCTCAACATGGGTAGTGACCCCAAGGTGCGAGCTGGGGCCGTAGATGTGGTGAGgtacggccagacttctgtgccatgtgatgatcttctgtctgtggggaggt Alignment from Exonerate_coding2genome cattcctgttaaatactaacttagactgacaaggctcttatcctccacaggggcgaccacacatatgctgaatgttgcttaaccattgtctccagaggtgctgaagcagtggttttcagcattgatggttcttttactgcgagtcgtctcaacatgggtagtgaccccaaggtgcgagctggggccgtagatgtggtgaggtacggccagacttctgtgccatgtgatgatcttctgtctgtggggaggt Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cattcctgttaaatactaacttagactgacaaggctcttatcctccacagGGGCGACCACACATATGCTGAATGTTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCGAGTCGTCTCAACATGGGTAGTGACCCCAAGGTGCGAGCTGGGGCCGTAGATGTGGTGAGgtacggccagacttctgtgccatgtgatgatcttctgtctgtggggaggt #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment --gt gGAACTGACAGAGATT-AATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG GGatgtacgaacccagaagcaggtcaatgtctgtcctgttctctctctagaGAATTGACAGAGATTCATCCGGC-ACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtgagtacccagaagcaggtcaatgtctgtcctgttctctctctagaGAATTGACAGAGATTCATCCGGCACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtacgaacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTCATCCGGCACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtacgaacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTCATCCGGCACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtacgaacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTCATCCGGCACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtacgaacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTCATCCGGCACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtacgaacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTCATCCGGCACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGC-ATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt gGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacaggGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTCATTTCAG-AGCCAAGACAAGGGAGAAACATAAGAAGGAAGTGTATGGTCACTGGatgtgagtacccagaagcaggtcaataagtcccttgcttctctggtagaGAA Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt gGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacaggGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTCATTTCAGAGCCAAGACAAGGGAGAAACATAAGAAGGAAgtgtatggtcactggatgtgagtacccagaagcaggtcaatgtctgtcctgttctctctctagaGAA Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTCATTTCAGAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaataagtcccttgcttctctggtagAGAA Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTCATTTCAGAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaataagtcccttgcttctctggtagAGAA Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAG-CATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGTG-------------------------------------------------------------GAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTCATTTCAGA-GCCAAGACAAGGGAGAAACATAAGAAGGAAGTGTATGGTCACTGGATGTGAGTACCCAGAAGCAGGTCAATAAGTCCCTTGCTTCTCTGGTAGAGAA Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTCATTTCAGAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaataagtcccttgcttctctggtagAGAA Alignment from Exonerate_coding2genome AGGGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacAGGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTCATTTCAGAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaataagtcccttgcttctctggtagAGAA Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTCATTTCAGAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaataagtcccttgcttctctggtagAGAA #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTC-AAGAGGCTGAAGGAGCTGAATGAAag GACATgtgagagatcaatgtcggatggttttgttttttgtcttctcttagGCACATCAGTGGGTTAAGGAGGTCGTACTGGACACACACATAATCCAATTTCAAGAGGCTAA-GGAACTTAAAGAAaggtaaagataagcaggattcaattcggtataattcctcacatacaattcaa Alignment from CESAR GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag GACATgtaagcgatcaatgtcggatggttttgttttttgtcttctcttagGCACATCAGTGGGTTAAGGAGGTCGTACTGGACACACACATAATCCAATTTCAAGAGGCTAAGGAACTTAAAGAAaggtaaagataagcaggattcaattcggtataattcctcacatacaattcaa Alignment from Spaln_aa2Genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACATgtgagagatcaatgtcggatggttttgttttttgtcttctcttagGCACATCAGTGGGTTAAGGAGGTCGTACTGGACACACACATAATCCAATTTCAAGAGGCTAAGGAACTTAAAGAAAGgtaaagataagcaggattcaattcggtataattcctcacatacaattcaa Alignment from Spaln_nt2Genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTT-CAAGAGGCTGAAGGAGCTGAATGAAAG GACATgtgagagatcaatgtcggatggttttgttttttgtcttctcttagGCACATCAGTGGGTTAAGGAGGTCGTACTGGACACACACATAATCCAATTTCAAGAGGCT-AAGGAACTTAAAGAAAGgtaaagataagcaggattcaattcggtataattcctcacatacaattcaa Alignment from Pairagon GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAG-TTCAAGAGGCTGAAGGAGCTGAATGAAAG GACATgtgagagatcaatgtcggatggttttgttttttgtcttctcttagGCACATCAGTGGGTTAAGGAGGTCGTACTGGACACACACATAATCCAATTTCAAGAGGCT-AAGGAACTTAAAGAAAGgtaaagataagcaggattcaattcggtataattcctcacatacaattcaa Alignment from Exonerate_protein2genome GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACATgtgagagatcaatgtcggatggttttgttttttgtcttctcttagGCACATCAGTGGGTTAAGGAGGTCGTACTGGACACACACATAATCCAATTTCAAGAGGCTAAGGAACTTAAAGAAAGgtaaagataagcaggattcaattcggtataattcctcacatacaattcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACATgtgagagatcaatgtcggatggttttgttttttgtcttctcttagGCACATCAGTGGGTTAAGGAGGTCGTACTGGACACACACATAATCCAATTTCAAGAGGCTAAGGAACTTAAAGAAAGgtaaagataagcaggattcaattcggtataattcctcacatacaattcaa #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCG-GAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tcttgtttggtcgtatcacttggagaatatatcattactttgctttacaggGGCAAGGCCTCCAACTCACGAGGATG-GAAAGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAATTGCAAGCTGGATCATCTACGACATgtaagcgatcaatgtcggatggtttctcctaccaccatcctgcagGCACA Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tcttgtttggtcgtatcacttggagaatatatcattactttgctttacaggGGCAAGGCCTCCAACTCACGAGGATGGAAAGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAATTGCAAGCTGGATCATCTACGACATgtaagcgatcaatgtcggatggttttgttttttgtcttctcttagGCACA Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tcttgtttggtcgtatcacttggagaatatatcattactttgctttacagGGGCAAGGCCTCCAACTCACGAGGATGGAAAGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAATTGCAAGCTGGATCATCTACGACATgtaagcgatcaatgtcggatggtttctcctaccaccatcctgcagGCACA Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCG-GAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tcttgtttggtcgtatcacttggagaatatatcattactttgctttacagGGGCAAGGCCTCCAACTCACGAGGATG-GAAAGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAATTGCAAGCTGGATCATCTACGACATgtaagcgatcaatgtcggatggtttctcctaccaccatcctgcagGCACA Alignment from Pairagon GGGCAAGGCCACCAACTCG-GAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tcttgtttggtcgtatcacttggagaatatatcattactttgctttacagGGGCAAGGCCTCCAACTCACGAGGATG-GAAAGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAATTGCAAGCTGGATCATCTACGACATgtaagcgatcaatgtcggatggtttctcctaccaccatcctgcagGCACA Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA tcttgtttggtcgtatcacttggagaatatatcattactttgctttacagGGGCAAGGCCTCCAACTCACGAGGATGGAAAGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAATTGCAAGCTGGATCATCTACGACATgtaagcgatcaatgtcggatggtttctcctaccaccatcctgcagGCACA Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGA---------------------------------------------CAGGCTCA tcttgtttggtcgtatcacttggagaatatatcattactttgctttacagGGGCAAGGCCTCCAACTCACGAGGATGGAAAGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAAAATCAAAAAGCACAAAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAATTGCAAGCTGGATCATCTACGACATGTAAGCGATCAATGTCGGATGGTTTCTCCTACCACCATCCTGCAGGCACA #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCT-ATGGTGAAGCTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ccagccaggaagctagcataccaaccaatacctcccctgctcctcctcagaaGTAATCCCCACACCCCTAGAAGAGCTAAGAAGTCACAAGGCCCATGGTGA-GCTGCACAGCCGACAGTGCGACCAAGACCTACAGGAATTACATAAGAAGCACCAGCATAAGGTTATAGCACTCACCCGACGTTTGCTCGATGGCCTGGCTCAGACAAGAGCAGAGGGGAAGTGCCAGCCATCTTCCAGTGTCctgtaagcataattgcaccatagcatggcagtatgtactggcttaacttaca Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ccagccaggaagctagcataccaaccaatacctcccctgctcctcctcagaaGTAATCCCCACACCCCTAGAAGAGCTAAGAAGTCACAAGGCCCATGGTGAGCTGCACAGCCGACAGTGCGACCAAGACCTACAGGAATTACATAAGAAGCACCAGCATAAGGTTATAGCACTCACCCGACGTTTGCTCGATGGCCTGGCTCAGACAAGAGCAGAGGGGAAGTGCCAGCCATCTTCCAGTGTCctgtaagcataattgcaccatagcatggcagtatgtactggcttaacttaca Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ccagccaggaagctagcataccaaccaatacctcccctgctcctcctcagAAGTAATCCCCACACCCCTAGAAGAGCTAAGAAGTCACAAGGCCCATGGTGAGCTGCACAGCCGACAGTGCGACCAAGACCTACAGGAATTACATAAGAAGCACCAGCATAAGGTTATAGCACTCACCCGACGTTTGCTCGATGGCCTGGCTCAGACAAGAGCAGAGGGGAAGTGCCAGCCATCTTCCAGTGTCCTgtaagcataattgcaccatagcatggcagtatgtactggcttaacttaca Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCT-ATGGTGAAGCTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ccagccaggaagctagcataccaaccaatacctcccctgctcctcctcagAAGTAATCCCCACACCCCTAGAAGAGCTAAGAAGTCACAAGGCCCATGGTG-AGCTGCACAGCCGACAGTGCGACCAAGACCTACAGGAATTACATAAGAAGCACCAGCATAAGGTTATAGCACTCACCCGACGTTTGCTCGATGGCCTGGCTCAGACAAGAGCAGAGGGGAAGTGCCAGCCATCTTCCAGTGTCCTgtaagcataattgcaccatagcatggcagtatgtactggcttaacttaca Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGG-CTATGGTGAAGCTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ccagccaggaagctagcataccaaccaatacctcccctgctcctcctcagAAGTAATCCCCACACCCCTAGAAGAGCTAAGAAGTCACAAGGCCCATGGTG-AGCTGCACAGCCGACAGTGCGACCAAGACCTACAGGAATTACATAAGAAGCACCAGCATAAGGTTATAGCACTCACCCGACGTTTGCTCGATGGCCTGGCTCAGACAAGAGCAGAGGGGAAGTGCCAGCCATCTTCCAGTGTCCTgtaagcataattgcaccatagcatggcagtatgtactggcttaacttaca Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ccagccaggaagctagcataccaaccaatacctcccctgctcctcctcagAAGTAATCCCCACACCCCTAGAAGAGCTAAGAAGTCACAAGGCCCATGGTGAGCTGCACAGCCGACAGTGCGACCAAGACCTACAGGAATTACATAAGAAGCACCAGCATAAGGTTATAGCACTCACCCGACGTTTGCTCGATGGCCTGGCTCAGACAAGAGCAGAGGGGAAGTGCCAGCCATCTTCCAGTGTCCTgtaagcataattgcaccatagcatggcagtatgtactggcttaacttaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ccagccaggaagctagcataccaaccaatacctcccctgctcctcctcagAAGTAATCCCCACACCCCTAGAAGAGCTAAGAAGTCACAAGGCCCATGGTGAGCTGCACAGCCGACAGTGCGACCAAGACCTACAGGAATTACATAAGAAGCACCAGCATAAGGTTATAGCACTCACCCGACGTTTGCTCGATGGCCTGGCTCAGACAAGAGCAGAGGGGAAGTGCCAGCCATCTTCCAGTGTCCTgtaagcataattgcaccatagcatggcagtatgtactggcttaacttaca #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCT-GTCTCTGCTATCCGCTCAg ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTCGTAT-TACAATCCACTCTggtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagac Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTCGTATTACAATCCACTCTggtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagtg Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTCGTATTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagac Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTCGTATTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagac Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTCGTATTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagac Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTCGTATTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagac Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTCGTATTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagac Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTCGTATTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagac #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGC-ATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagaTACAACAGACAACAGCTTAGTCAGCATATACTCCA-GAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGggtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagaTACAACAGACAACAGCTTAGTCAGCATATACTCCAGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGggtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGCATATACTCCAGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCC-GCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGCATATACTC-CAGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Pairagon ATACAACAAACAGCAGCTCAGCC-GCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGCATATACTCC-AGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGCATATACTCCAGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGCATATACTCCAGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tgttggctcaatattctcggcctgcgatgctaacccggctctccatgcagtGAATCTATTCGCCCTGATCGAATTTCCTT-GGAAGTTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGatgtaccgaagtcaccccaagtcttctcctggagtgactgtgaaatctcatt Alignment from CESAR tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tgttggctcaatattctcggcctgcgatgctaacccggctctccatgcagtGAATCTATTCGCCCTGATCGAATTTCCTTGGAAGTTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGatgtaccgaagtcaccccaagtcttctcctggagtgactgtgaaatctcatt Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttggctcaatattctcggcctgcgatgctaacccggctctccatgcagTGAATCTATTCGCCCTGATCGAATTTCCTTGGAAGTTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtaccgaagtcaccccaagtcttctcctggagtgactgtgaaatctcatt Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttggctcaatattctcggcctgcgatgctaacccggctctccatgcagTGAATCTATTCGCCCTGATCGAATTTCCTTGGAAGTTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtaccgaagtcaccccaagtcttctcctggagtgactgtgaaatctcatt Alignment from Pairagon TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttggctcaatattctcggcctgcgatgctaacccggctctccatgcagTGAATCTATTCGCCCTGATCGAATTTCCTTGGAAGTTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtaccgaagtcaccccaagtcttctcctggagtgactgtgaaatctcatt Alignment from Exonerate_protein2genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttggctcaatattctcggcctgcgatgctaacccggctctccatgcagTGAATCTATTCGCCCTGATCGAATTTCCTTGGAAGTTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtaccgaagtcaccccaagtcttctcctggagtgactgtgaaatctcatt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgttggctcaatattctcggcctgcgatgctaacccggctctccatgcagTGAATCTATTCGCCCTGATCGAATTTCCTTGGAAGTTTTTGAACGGTTCTTGAATAAACTGTGTCTGCGAGCAGATATTGACAAGATTGTGCTGGAGATgtaccgaagtcaccccaagtcttctcctggagtgactgtgaaatctcatt #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTG-GAGTCCTGTGGCCTCAACTTCAACCGAgt tgctgatgtctgtgtaaccacttaaactaattttttttatcccctttcagcATTCTTAAGATGTTCTCAGCAGATAAGAAGTGTGTAGAGAACACGCTGCGAATCTTGTG-TCTCAACTTGAACCGAgtgtaagagtcaacgccagtgtggtagttgggtcagattggctactgccatc Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tgctgatgtctgtgtaaccacttaaactaattttttttatcccctttcagcATTCTTAAGATGTTCTCAGCAGATAAGAAGTGTGTAGAGAACACGCTGCGAATCTTGTGTCTCAACTTGAACCGAgtgtaagagtcaacgccagtgtggtagttgggtcagattggctactgccatc Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtgtaaccacttaaactaattttttttatcccctttcagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGTGTAGAGAACACGCTGCGAATCTTGTGTCTCAACTTGAACCGAGTgtaagagtcaacgccagtgtggtagttgggtcagattggctactgccatc Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTG-GAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtgtaaccacttaaactaattttttttatcccctttcagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGTGTAGAGAACACGCTGCGAATCTTGT-GTCTCAACTTGAACCGAGTgtaagagtcaacgccagtgtggtagttgggtcagattggctactgccatc Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTG-GAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtgtaaccacttaaactaattttttttatcccctttcagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGTGTAGAGAACACGCTGCGAATCTTGT-GTCTCAACTTGAACCGAGTgtaagagtcaacgccagtgtggtagttgggtcagattggctactgccatc Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtgtaaccacttaaactaattttttttatcccctttcagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGTGTAGAGAACACGCTGCGAATCTTGTGTCTCAACTTGAACCGAGTgtaagagtcaacgccagtgtggtagttgggtcagattggctactgccatc Alignment from Exonerate_coding2genome tgctgatgtctgtgtaaccacttaaactaattttttttatcccctttcagcattcttaagatgttctcagcagataagaagtgtgtagagaacacgctgcgaatcttgtgtctcaacttgaaccgagtgtaagagtcaacgccagtgtggtagttgggtcagattggctactgccatc Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tgctgatgtctgtgtaaccacttaaactaattttttttatcccctttcagCATTCTTAAGATGTTCTCAGCAGATAAGAAGTGTGTAGAGAACACGCTGCGAATCTTGTGTCTCAACTTGAACCGAGTgtaagagtcaacgccagtgtggtagttgggtcagattggctactgccatc #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAgc tcaatgggcctaatcctccattccataaagtcatctcacttgctctgtagGTATGGTCAGAGGAGTTGTTTAGACTAGCAATGAACATATTGGCCCAGCAATGCATCCC-AAACACATTCTCACGTAAGccgtgagtctacaagcacacagggggtgggaaaatgtctcactgtgcttcat Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc tcaatgggcctaatcctccattccataaagtcatctcacttgctctgtagGTATGGTCAGAGGAGTTGTTTAGACTAGCAATGAACATATTGGCCCAGCAATGCATCCCAAACACATTCTCACGTAAGccgtgagtctacaagcacacagggggtgggaaaatgtctcactgtgcttcat Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC tcaatgggcctaatcctccattccataaagtcatctcacttgctctgtagGTATGGTCAGAGGAGTTGTTTAGACTAGCAATGAACATATTGGCCCAGCAATGCATCCCAAACACATTCTCACGTAAGCCgtgagtctacaagcacacagggggtgggaaaatgtctcactgtgcttcat Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAGC tcaatgggcctaatcctccattccataaagtcatctcacttgctctgtagGTATGGTCAGAGGAGTTGTTTAGACTAGCAATGAACATATTGGCCCAGCAATGCATCCC-AAACACATTCTCACGTAAGCCgtgagtctacaagcacacagggggtgggaaaatgtctcactgtgcttcat Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAGC tcaatgggcctaatcctccattccataaagtcatctcacttgctctgtagGTATGGTCAGAGGAGTTGTTTAGACTAGCAATGAACATATTGGCCCAGCAATGCATCCC-AAACACATTCTCACGTAAGCCgtgagtctacaagcacacagggggtgggaaaatgtctcactgtgcttcat Alignment from Exonerate_protein2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC tcaatgggcctaatcctccattccataaagtcatctcacttgctctgtagGTATGGTCAGAGGAGTTGTTTAGACTAGCAATGAACATATTGGCCCAGCAATGCATCCCAAACACATTCTCACGTAAGCCgtgagtctacaagcacacagggggtgggaaaatgtctcactgtgcttcat Alignment from Exonerate_coding2genome tcaatgggcctaatcctccattccataaagtcatctcacttgctctgtaggtatggtcagaggagttgtttagactagcaatgaacatattggcccagcaatgcatcccaaacacattctcacgtaagccgtgagtctacaagcacacagggggtgggaaaatgtctcactgtgcttcat Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC tcaatgggcctaatcctccattccataaagtcatctcacttgctctgtagGTATGGTCAGAGGAGTTGTTTAGACTAGCAATGAACATATTGGCCCAGCAATGCATCCCAAACACATTCTCACGTAAGCCgtgagtctacaagcacacagggggtgggaaaatgtctcactgtgcttcat #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCT-GACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG taccataccattggggagcactttgaactaccttatttcattcctttcagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCTCGACACAC-CCTGGAGGAGAGATTGATG---------ACTGGGCCAGATTTAGTAACAACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtgtgttcagcctgatctccatattgaagccattagttcattcaagcctt Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG taccataccattggggagcactttgaactaccttatttcattcctttcagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCTCGACACACCCTGGAGGAGAGATTGATGACT---------GGGCCAGATTTAGTAACAACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtgtgttcagcctgatctccatattgaagccattagttcattcaagcctt Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG taccataccattggggagcactttgaactaccttatttcattcctttcagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCTCGACACACCCTGGAGGAGAGATTGATGACT---------GGGCCAGATTTAGTAACAACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtgtgttcagcctgatctccatattgaagccattagttcattcaagcctt Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCT-GACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG taccataccattggggagcactttgaactaccttatttcattcctttcagGATCCTAAGATTCGTGAAGT------GTTTGGTGGCCCTCGACACAC-CCTGGAGGAGAGATTGATGA---------CTGGGCCAGATTTAGTAACAACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtgtgttcagcctgatctccatattgaagccattagttcattcaagcctt Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCT---GACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG taccataccattggggagcactttgaactaccttatttcattcctttcagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCTCGACACACC---CTGGAGGAGAGATTGATGAC---------TGGGCCAGATTTAGTAACAACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtgtgttcagcctgatctccatattgaagccattagttcattcaagcctt Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG taccataccattggggagcactttgaactaccttatttcattcctttcagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCTCGACACACCCTGGAGGAGAGATTGATGACT---------GGGCCAGATTTAGTAACAACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtgtgttcagcctgatctccatattgaagccattagttcattcaagcctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG taccataccattggggagcactttgaactaccttatttcattcctttcagGATCCTAAGATTCGTGAAGTG------TTTGGTGGCCCTCGACACACCCTGGAGGAGAGATTGATGACT---------GGGCCAGATTTAGTAACAACCACATTCGTGAATTTCATGGCAGTGCAAGATGGTACAGTTAAGgtgtgttcagcctgatctccatattgaagccattagttcattcaagcctt #### Pnlip_ID12752_11 --> 1 - 2 Original Alignment gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCA-ACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt ccaccagggacaagagaaatggctcaagttctctcctttgcccaacccagg------------------------GATGGCAATGAATTTGAGTCTGAA------GTTGGAGACTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCACACACTTC-GAGAGTGGGGGCATCAGGGATTACTGTTGAAAGAAATGATGGGAGAgtgtaagttacctgtgtaccaaaagacagcagggtgtagtttaaagtcatat Alignment from CESAR gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt ccaccagggacaagagaaatggctcaagttctctcctttgcccaacccaggGAT------------------------GGCAATGAATTTGAGTCT------GAAGTTGGAGACTTGCAGAGGGTCAAATTTATT---GGCAACAATGTAATTAACCCACACACTTCGAGAGTGGGGGCATCAGGGATTACTGTTGAAAGAAATGATGGGAGAgtgtaagttacctgtgtaccaaaagacagcagggtgtagtttaaagtcatat Alignment from Spaln_aa2Genome CAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ccaccagggacaagagaaatggctcaagttctctcctttgcccaacccagGGATGGCAATGAATTTGAGTCTGAAGTTGGAGACTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCACACACTTCGAGAGTGGGGGCATCAGGGATTACTGTTGAAAGAAATGATGGGAGAGTgtaagttacctgtgtaccaaaagacagcagggtgtagtttaaagtcatat Alignment from Spaln_nt2Genome TCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCA-ACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ccaccagggacaagagaaatggctcaagttctctcctttgcccaacccagGGATGGCAATGAATTTGAGTCT------GAAGTTGGAGACTTGCAGAGGGTCAAATTTATTGG---CAACAATGTAATTAACCCACACACT-TCGAGAGTGGGGGCATCAGGGATTACTGTTGAAAGAAATGATGGGAGAGTgtaagttacctgtgtaccaaaagacagcagggtgtagtttaaagtcatat Alignment from Pairagon GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCC--------AAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ccaccagggacaagagaaatggctcaagttctctcctttgcccaacccagGG------------------------ATGGCAATGAATTTGAGTCT------GAAGTTGGAGACTTGCAGAGGGTCAAATTTATTGG---CAACAATGTAATTAACCCA--------CACACTTCGAGAGTGGGGGCATCAGGGATTACTGTTGAAAGAAATGATGGGAGAGTgtaagttacctgtgtaccaaaagacagcagggtgtagtttaaagtcatat Alignment from Exonerate_protein2genome CAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ccaccagggacaagagaaatggctcaagttctctcctttgcccaacccagGGATGGCAATGAATTTGAGTCTGAAGTTGGAGACTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCACACACTTCGAGAGTGGGGGCATCAGGGATTACTGTTGAAAGAAATGATGGGAGAGTgtaagttacctgtgtaccaaaagacagcagggtgtagtttaaagtcatat Alignment from Exonerate_coding2genome CAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ccaccagggacaagagaaatggctcaagttctctcctttgcccaacccagGGATGGCAATGAATTTGAGTCTGAAGTTGGAGACTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCACACACTTCGAGAGTGGGGGCATCAGGGATTACTGTTGAAAGAAATGATGGGAGAGTgtaagttacctgtgtaccaaaagacagcagggtgtagtttaaagtcatat Alignment from GeneWise -------AATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ccaccagggacaagagaaatggctcaagttctctcctttgcccaacccagGGATGGCAATGAATTTGAGTCTGAAGTT------GGAGACTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCACACACTTCGAGAGTGGGGGCATCAGGGATTACTGTTGAAAGAAATGATGGGAGAGTgtaagttacctgtgtaccaaaagacagcagggtgtagtttaaagtcatat #### Pnliprp2_ID12782_5 --> 0 - 1 Original Alignment ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGC-AGGAGGCTGGAGGGCCATGTGGGCAGGATCACAg tataacttaacatcattggactaaacgtgataccactctttgttttgcagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTTATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAGGCAGGACAGGAGGC-GGAGGGCCATGTGGGCAGGATAACAggtgagtgtcattttgactaatatacaagcaggggtgggcacaagcagggg Alignment from CESAR ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAg tataacttaacatcattggactaaacgtgataccactctttgttttgcagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTTATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAGGCAGGACAGGAGGCGGAGGGCCATGTGGGCAGGATAACAggtgagtgtcattttgactaatatacaagcaggggtgggcacaagcagggg Alignment from Spaln_aa2Genome ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacttaacatcattggactaaacgtgataccactctttgttttgcagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTTATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAGGCAGGACAGGAGGCGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatatacaagcaggggtgggcacaagcagggg Alignment from Spaln_nt2Genome ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacttaacatcattggactaaacgtgataccactctttgttttgcagACAGAGACAGGGCATAGCCCAGAAAATG---ATCTTATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAGGCAGGACAGGAGGCGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatatacaagcaggggtgggcacaagcagggg Alignment from Pairagon ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGG-CAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacttaacatcattggactaaacgtgataccactctttgttttgcagACAGAGACAGGGCATAGCCCAGAAAATG---ATCTTATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAGGCAGGACAGGAGGC-GGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatatacaagcaggggtgggcacaagcagggg Alignment from Exonerate_protein2genome ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacttaacatcattggactaaacgtgataccactctttgttttgcagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTTATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAGGCAGGACAGGAGGCGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatatacaagcaggggtgggcacaagcagggg Alignment from Exonerate_coding2genome ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacttaacatcattggactaaacgtgataccactctttgttttgcagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTTATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAGGCAGGACAGGAGGCGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatatacaagcaggggtgggcacaagcagggg Alignment from GeneWise ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacttaacatcattggactaaacgtgataccactctttgttttgcagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTTATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAGGCAGGACAGGAGGCGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatatacaagcaggggtgggcacaagcagggg #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTCAGC-CGAGTCCTTAAGCATATCCTGACGCAGAGAag gatgaaatgatgaacttgccttattcccgtgctaatcttgtcacacccagcTCCTTGGGGACACCCGATAGATTCAGCCAGAGTCCTCA-GCACATACTGACACAGAGGaggtcagttaaacagcaaagtgaatcatacgtactagcaaggacatttaaac Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gatgaaatgatgaacttgccttattcccgtgctaatcttgtcacacccagcTCCTTGGGGACACCCGATAGATTCAGCCAGAGTCCTCAGCACATACTGACACAGAGGaggtcagttaaacagcaaagtgaatcatacgtactagcaaggacatttaaac Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gatgaaatgatgaacttgccttattcccgtgctaatcttgtcacacccagCTCCTTGGGGACACCCGATAGATTCAGCCAGAGTCCTCAGCACATACTGACACAGAGGAGgtcagttaaacagcaaagtgaatcatacgtactagcaaggacatttaaac Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTCAGCC-GAGTCCTTAAGCATATCCTGACGCAGAGAAG gatgaaatgatgaacttgccttattcccgtgctaatcttgtcacacccagCTCCTTGGGGACACCCGATAGATTCAGCCAGAGTCC-TCAGCACATACTGACACAGAGGAGgtcagttaaacagcaaagtgaatcatacgtactagcaaggacatttaaac Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATTCAGCC-GAGTCCTTAAGCATATCCTGACGCAGAGAAG gatgaaatgatgaacttgccttattcccgtgctaatcttgtcacacccagCTCCTTGGGGACACCCGATAGATTCAGCCAGAGTCCTC-AGCACATACTGACACAGAGGAGgtcagttaaacagcaaagtgaatcatacgtactagcaaggacatttaaac Alignment from Exonerate_protein2genome gatgaaatgatgaacttgccttattcccgtgctaatcttgtcacacccagctccttggggacacccgatagattcagccagagtcctcagcacatactgacacagaggaggtcagttaaacagcaaagtgaatcatacgtactagcaaggacatttaaac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gatgaaatgatgaacttgccttattcccgtgctaatcttgtcacacccagCTCCTTGGGGACACCCGATAGATTCAGCCAGAGTCCTCAGCACATACTGACACAGAGGAGgtcagttaaacagcaaagtgaatcatacgtactagcaaggacatttaaac #### Pola2_ID1325_15 --> 0 - 2 Original Alignment CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTG-ATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTACATG---TACT-AACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTaggtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from CESAR CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTA---CATGTACTAACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTaggtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Spaln_aa2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTA---CATGTACTAACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Spaln_nt2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAG---TACATGTACTAACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Pairagon CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTG-------------------------------ATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTACATGTACTAACTACTGCAGATTTACTCTATCATGTT----------------------------------GGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Exonerate_protein2genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTACATGTA---CTAACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Exonerate_coding2genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTT agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTACATGTA---CTAACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTaggtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from GeneWise CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTACATGTA---CTAACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag #### Pola2_ID1329_12 --> 0 - 0 Original Alignment TTCGGACCTTTCCTGGATGCT-AAACATGAACAGGTGGAG tgtcctatgtaatgtagtagttcagcattttatgtctctcctgtcattagTTTGGGCCACTGCTTGATGCCCGAAC-AGAACAGGTAGAGgtactaccctggggatagccccagcactatacctatatccatcgttattc Alignment from CESAR TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG tgtcctatgtaatgtagtagttcagcattttatgtctctcctgtcattagTTTGGGCCACTGCTTGATGCCCGAACAGAACAGGTAGAGgtactaccctggggatagccccagcactatacctatatccatcgttattc Alignment from Spaln_aa2Genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG tgtcctatgtaatgtagtagttcagcattttatgtctctcctgtcattagTTTGGGCCACTGCTTGATGCCCGAACAGAACAGGTAGAGgtactaccctggggatagccccagcactatacctatatccatcgttattc Alignment from Spaln_nt2Genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG tgtcctatgtaatgtagtagttcagcattttatgtctctcctgtcattagTTTGGGCCACTGCTTGATGCCCGAACAGAACAGGTAGAGgtactaccctggggatagccccagcactatacctatatccatcgttattc Alignment from Pairagon tgtcctatgtaatgtagtagttcagcattttatgtctctcctgtcattagtttgggccactgcttgatgcccgaacagaacaggtagaggtactaccctggggatagccccagcactatacctatatccatcgttattc Alignment from Exonerate_protein2genome tgtcctatgtaatgtagtagttcagcattttatgtctctcctgtcattagtttgggccactgcttgatgcccgaacagaacaggtagaggtactaccctggggatagccccagcactatacctatatccatcgttattc Alignment from Exonerate_coding2genome tgtcctatgtaatgtagtagttcagcattttatgtctctcctgtcattagtttgggccactgcttgatgcccgaacagaacaggtagaggtactaccctggggatagccccagcactatacctatatccatcgttattc Alignment from GeneWise TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG tgtcctatgtaatgtagtagttcagcattttatgtctctcctgtcattagTTTGGGCCACTGCTTGATGCCCGAACAGAACAGGTAGAGgtactaccctggggatagccccagcactatacctatatccatcgttattc #### Pola2_ID1332_9 --> 0 - 0 Original Alignment GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACT-GCCACCAAACTCTATGAG atcctcaggtcacacctgtcatggccacttcctccttctttacctcctagGTTGTGATTATGGAAGGATTCAACACTACTGGTAAAAGACTTACTCGCCA-CAAACTCTATGAGgtatgtaatgggccaacctttctctactacaaaataaaatgagtcaggta Alignment from CESAR GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaggtcacacctgtcatggccacttcctccttctttacctcctagGTTGTGATTATGGAAGGATTCAACACTACTGGTAAAAGACTTACTCGCCACAAACTCTATGAGgtatgtaatgggccaacctttctctactacaaaataaaatgagtcaggta Alignment from Spaln_aa2Genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaggtcacacctgtcatggccacttcctccttctttacctcctagGTTGTGATTATGGAAGGATTCAACACTACTGGTAAAAGACTTACTCGCCACAAACTCTATGAGgtatgtaatgggccaacctttctctactacaaaataaaatgagtcaggta Alignment from Spaln_nt2Genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaggtcacacctgtcatggccacttcctccttctttacctcctagGTTGTGATTATGGAAGGATTCAACACTACTGGTAAAAGACTTACTCGCCACAAACTCTATGAGgtatgtaatgggccaacctttctctactacaaaataaaatgagtcaggta Alignment from Pairagon GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaggtcacacctgtcatggccacttcctccttctttacctcctagGTTGTGATTATGGAAGGATTCAACACTACTGGTAAAAGACTTACTCGCCACAAACTCTATGAGgtatgtaatgggccaacctttctctactacaaaataaaatgagtcaggta Alignment from Exonerate_protein2genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG----GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG atcctcaggtcacacctgtcatggccacttcctccttctttacctcctagGTTGTGATTATGGAAGGATTCAACACTACTGGTAAAAGACTTACTCGCCACAAACTCTATGAGGTATGTAATGGGCCAACCTTTCTCTACTACAAAATAAAATGAGTCAGgta Alignment from Exonerate_coding2genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG----GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG atcctcaggtcacacctgtcatggccacttcctccttctttacctcctagGTTGTGATTATGGAAGGATTCAACACTACTGGTAAAAGACTTACTCGCCACAAACTCTATGAGGTATGTAATGGGCCAACCTTTCTCTACTACAAAATAAAATGAGTCAGgta Alignment from GeneWise GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG atcctcaggtcacacctgtcatggccacttcctccttctttacctcctagGTTGTGATTATGGAAGGATTCAACACTACTGGTAAAAGACTTACTCGCCACAAACTCTATGAGgtatgtaatgggccaacctttctctactacaaaataaaatgagtcaggta #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG gaagatactggtggcccttagaccccagcctaccttgtgtgtgttctcagCAACTGTTAGTTCGACTGCT-TAAGACCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctctaattctac Alignment from CESAR GAGCTGTTAGTTGACTGTTACAAACCCACTGAG gaagatactggtggcccttagaccccagcctaccttgtgtgtgttctcagCAACTGTTAGTTCGACTGCTTAAGACCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctctaattctcc Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG gaagatactggtggcccttagaccccagcctaccttgtgtgtgttctcagCAACTGTTAGTTCGACTGCTTAAGACCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctctaattctac Alignment from Spaln_nt2Genome GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG gaagatactggtggcccttagaccccagcctaccttgtgtgtgttctcagCAACTGTTAGTTCGACTGCT-TAAGACCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctctaattctac Alignment from Pairagon GAGCTGTTAGTT-----------GACTGTTACAAACCCACTGAG gaagatactggtggcccttagaccccagcctaccttgtgtgtgttctcagCAACTGTTAGTTCGACTGCTTAAGA-----------CCACTGAGgtaagttactacccttcccccaaggtatgaagctgttcctctaattctac Alignment from Exonerate_protein2genome gaagatactggtggcccttagaccccagcctaccttgtgtgtgttctcagcaactgttagttcgactgcttaagaccactgaggtaagttactacccttcccccaaggtatgaagctgttcctctaattctac Alignment from Exonerate_coding2genome gaagatactggtggcccttagaccccagcctaccttgtgtgtgttctcagcaactgttagttcgactgcttaagaccactgaggtaagttactacccttcccccaaggtatgaagctgttcctctaattctac Alignment from GeneWise ----------------CTGTTAGTTG gaagatactggtggcccttagaccccagcctaccttgtgtgtgttctcagcaactgttagttcgactgcttaagaccactgaggtaagttactacccttcccccaagGTATGAAGCTGTTCCTCTAATTCTAC #### Ppp1r32_ID2840_11 --> 1 - 2 Original Alignment gTACTTCGAGAATATCCCCAAG-GGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAag aattaatgctctcaggcactaattaggaggatgcattttggtttttgtagcTACTTTGAGAATATTCCTGAGCGGGTTGG-TCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTCCA------CTTAGTGATCTGAACAACCACACTCTTATGGATTCCATGCCAAAT---ACAGAGACCCTGACACATCTGCATCCCCATGTAGGAaggtgagttggttgattaggagaactgctctttgttgcaaaggaagatgaac Alignment from CESAR gTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAag aattaatgctctcaggcactaattaggaggatgcattttggtttttgtagcTACTTTGAGAATATTCCTGAGCGGGTTGGTCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGT------CCACTTAGTGATCTGAACAACCACACTCTTATGGATTCCATGCCAAAT---ACAGAGACCCTGACACATCTGCATCCCCATGTAGGAaggtgagttggttgattaggagaactgctctttgttgcaaaggaagatgaac Alignment from Spaln_aa2Genome GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG aattaatgctctcaggcactaattaggaggatgcattttggtttttgtagCTACTTTGAGAATATTCCTGAGCGGGTTGGTCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGT------CCACTTAGTGATCTGAACAACCACACTCTTATGGATTCCATGCCAAAT---ACAGAGACCCTGACACATCTGCATCCCCATGTAGGAAGgtgagttggttgattaggagaactgctctttgttgcaaaggaagatgaac Alignment from Spaln_nt2Genome GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG aattaatgctctcaggcactaattaggaggatgcattttggtttttgtagCTACTTTGAGAATATTCCTGAGCGGGTTGGTCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGG------TCCACTTAGTGATCTGAACAACCACACTCTTATGGATTCCATGCCAAAT---ACAGAGACCCTGACACATCTGCATCCCCATGTAGGAAGgtgagttggttgattaggagaactgctctttgttgcaaaggaagatgaac Alignment from Pairagon GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG aattaatgctctcaggcactaattaggaggatgcattttggtttttgtagCTACTTTGAGAATATTCCTGAGCGGGTTGGTCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGG------TCCACTTAGTGATCTGAACAACCACACTCTTATGGATTCCATGCCAAAT---ACAGAGACCCTGACACATCTGCATCCCCATGTAGGAAGgtgagttggttgattaggagaactgctctttgttgcaaaggaagatgaac Alignment from Exonerate_protein2genome GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG aattaatgctctcaggcactaattaggaggatgcattttggtttttgtagCTACTTTGAGAATATTCCTGAGCGGGTTGGTCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGT------CCACTTAGTGATCTGAACAACCACACTCTTATGGATTCCATGCCAAAT---ACAGAGACCCTGACACATCTGCATCCCCATGTAGGAAGgtgagttggttgattaggagaactgctctttgttgcaaaggaagatgaac Alignment from Exonerate_coding2genome aattaatgctctcaggcactaattaggaggatgcattttggtttttgtagctactttgagaatattcctgagcgggttggtcgggaaggctggactcgaggtggcatacaaccccaaagagcaggtccacttagtgatctgaacaaccacactcttatggattccatgccaaatacagagaccctgacacatctgcatccccatgtaggaaggtgagttggttgattaggagaactgctctttgttgcaaaggaagatgaac Alignment from GeneWise GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG aattaatgctctcaggcactaattaggaggatgcattttggtttttgtagCTACTTTGAGAATATTCCTGAGCGGGTTGGTCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTCCA------CTTAGTGATCTGAACAACCACACTCTTATGGATTCCATGCCAAAT---ACAGAGACCCTGACACATCTGCATCCCCATGTAGGAAGgtgagttggttgattaggagaactgctctttgttgcaaaggaagatgaac #### Ppp1r32_ID2841_10 --> 0 - 2 Original Alignment GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGAT-CAGCGGTACCTGACCACCTACAACCAAgg catcccagattatgggatactatactatcaatctgtgaacctctctgcagGAACCAACAGGATTTAATTTGAACAACCCCAGTCATGTCCAGACTTCTTATCAGGAAGATAGAGAGCCAGAGGTACC-AAGTACCTATAATCAGgggtatggatgttaaaattgaaactggaagagtgtagtcacttgatttatgt Alignment from CESAR GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAgg catcccagattatgggatactatactatcaatctgtgaacctctctgcagGAACCAACAGGATTTAATTTGAACAACCCCAGTCATGTCCAGACTTCTTATCAGGAAGATAGAGAGCCAGAGGTACCAAGTACCTATAATCAGgggtatggatgttaaaattgaaactggaagagtgtagtcacttgatttatgt Alignment from Spaln_aa2Genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG catcccagattatgggatactatactatcaatctgtgaacctctctgcagGAACCAACAGGATTTAATTTGAACAACCCCAGTCATGTCCAGACTTCTTATCAGGAAGATAGAGAGCCAGAGGTACCAAGTACCTATAATCAGGGgtatggatgttaaaattgaaactggaagagtgtagtcacttgatttatgt Alignment from Spaln_nt2Genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATC-AGCGGTACCTGACCACCTACAACCAAGG catcccagattatgggatactatactatcaatctgtgaacctctctgcagGAACCAACAGGATTTAATTTGAACAACCCCAGTCATGTCCAGACTTCTTATCAGGAAGATAGAGAGCCAGAGGTACC-AAGTACCTATAATCAGGGgtatggatgttaaaattgaaactggaagagtgtagtcacttgatttatgt Alignment from Pairagon GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGA-TCAGCGGTACCTGACCACCTACAACCAAGG catcccagattatgggatactatactatcaatctgtgaacctctctgcagGAACCAACAGGATTTAATTTGAACAACCCCAGTCATGTCCAGACTTCTTATCAGGAAGATAGAGAGCCAGAGGTACC-AAGTACCTATAATCAGGGgtatggatgttaaaattgaaactggaagagtgtagtcacttgatttatgt Alignment from Exonerate_protein2genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG catcccagattatgggatactatactatcaatctgtgaacctctctgcagGAACCAACAGGATTTAATTTGAACAACCCCAGTCATGTCCAGACTTCTTATCAGGAAGATAGAGAGCCAGAGGTACCAAGTACCTATAATCAGGGgtatggatgttaaaattgaaactggaagagtgtagtcacttgatttatgt Alignment from Exonerate_coding2genome catcccagattatgggatactatactatcaatctgtgaacctctctgcaggaaccaacaggatttaatttgaacaaccccagtcatgtccagacttcttatcaggaagatagagagccagaggtaccaagtacctataatcaggggtatggatgttaaaattgaaactggaagagtgtagtcacttgatttatgt Alignment from GeneWise GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG catcccagattatgggatactatactatcaatctgtgaacctctctgcagGAACCAACAGGATTTAATTTGAACAACCCCAGTCATGTCCAGACTTCTTATCAGGAAGATAGAGAGCCAGAGGTACCAAGTACCTATAATCAGGGgtatggatgttaaaattgaaactggaagagtgtagtcacttgatttatgt #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGG-GAGTCTGTGGGGAACAAG ccacctctcatagtgtccaattgtacctccaccatgctgccctcacgcagGTTCCTGCGTTGGCACGTCAGTCTGCCAGCATTAGCCATAGATTCTACCGTGCTCCGCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGCGAGA-TGTGGGGAATAAAgtgagacctcaaacacaagtcctatggtggcatcccagattatgggatac Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ccacctctcatagtgtccaattgtacctccaccatgctgccctcacgcagGTTCCTGCGTTGGCACGTCAGTCTGCCAGCATTAGCCATAGATTCTACCGTGCTCCGCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGCGAGATGTGGGGAATAAAgtgagacctcaaacacaagtcctatggtggcatcccagattatgggatac Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ccacctctcatagtgtccaattgtacctccaccatgctgccctcacgcagGTTCCTGCGTTGGCACGTCAGTCTGCCAGCATTAGCCATAGATTCTACCGTGCTCCGCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGCGAGATGTGGGGAATAAAgtgagacctcaaacacaagtcctatggtggcatcccagattatgggatac Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ccacctctcatagtgtccaattgtacctccaccatgctgccctcacgcagGTTCCTGCGTTGGCACGTCAGTCTGCCAGCATTAGCCATAGATTCTACCGTGCTCCGCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGCGAGATGTGGGGAATAAAgtgagacctcaaacacaagtcctatggtggcatcccagattatgggatac Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ccacctctcatagtgtccaattgtacctccaccatgctgccctcacgcagGTTCCTGCGTTGGCACGTCAGTCTGCCAGCATTAGCCATAGATTCTACCGTGCTCCGCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGCGAGATGTGGGGAATAAAgtgagacctcaaacacaagtcctatggtggcatcccagattatgggatac Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ccacctctcatagtgtccaattgtacctccaccatgctgccctcacgcagGTTCCTGCGTTGGCACGTCAGTCTGCCAGCATTAGCCATAGATTCTACCGTGCTCCGCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGCGAGATGTGGGGAATAAAgtgagacctcaaacacaagtcctatggtggcatcccagattatgggatac Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ccacctctcatagtgtccaattgtacctccaccatgctgccctcacgcagGTTCCTGCGTTGGCACGTCAGTCTGCCAGCATTAGCCATAGATTCTACCGTGCTCCGCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGCGAGATGTGGGGAATAAAgtgagacctcaaacacaagtcctatggtggcatcccagattatgggatac Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ccacctctcatagtgtccaattgtacctccaccatgctgccctcacgcagGTTCCTGCGTTGGCACGTCAGTCTGCCAGCATTAGCCATAGATTCTACCGTGCTCCGCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGCGAGATGTGGGGAATAAAgtgagacctcaaacacaagtcctatggtggcatcccagattatgggatac #### Ppp1r32_ID2845_6 --> 2 - 0 Original Alignment atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAG-CCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagatCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCCTCCTTCAC-TACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from CESAR atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagatCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCCTCCTTCACTACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Spaln_aa2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCCTCCTTCACTACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Spaln_nt2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCCTCCTTCACTACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Pairagon ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCCTCCTTCACTACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Exonerate_protein2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCCTCCTTCACTACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Exonerate_coding2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCTGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTA cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCCTCCTTCACTACCTTCCCTGGGAAGTCTGTAGGGGGTAATAGTGTAACACTCACAATGCTCCACATCAGGGGATGGgt Alignment from GeneWise ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCCTCCTTCACTACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt #### Ppp1r32_ID2846_5 --> 0 - 1 Original Alignment GGTCCACGCTTCATGACTTCT-GAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAg gcagttggtcgaactcggattctatgaactgagacctatcccacccacagGGACCATGGTTCATGCCTTCTCGAAT-CAATGCTAAGTATATAAGGGAATCACCAATTCACCCTggtaaggccttgcaatttgcttttgtttgtgtactatcaaggcccagaagt Alignment from CESAR GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAg gcagttggtcgaactcggattctatgaactgagacctatcccacccacagGGACCATGGTTCATGCCTTCTCGAATCAATGCTAAGTATATAAGGGAATCACCAATTCACCCTggtaaggccttgcaatttgcttttgtttgtgtactatcaaggcccagaagt Alignment from Spaln_aa2Genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG gcagttggtcgaactcggattctatgaactgagacctatcccacccacagGGACCATGGTTCATGCCTTCTCGAATCAATGCTAAGTATATAAGGGAATCACCAATTCACCCTGgtaaggccttgcaatttgcttttgtttgtgtactatcaaggcccagaagt Alignment from Spaln_nt2Genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG gcagttggtcgaactcggattctatgaactgagacctatcccacccacagGGACCATGGTTCATGCCTTCTCGAATCAATGCTAAGTATATAAGGGAATCACCAATTCACCCTGgtaaggccttgcaatttgcttttgtttgtgtactatcaaggcccagaagt Alignment from Pairagon GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG gcagttggtcgaactcggattctatgaactgagacctatcccacccacagGGACCATGGTTCATGCCTTCTCGAATCAATGCTAAGTATATAAGGGAATCACCAATTCACCCTGgtaaggccttgcaatttgcttttgtttgtgtactatcaaggcccagaagt Alignment from Exonerate_protein2genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG gcagttggtcgaactcggattctatgaactgagacctatcccacccacagGGACCATGGTTCATGCCTTCTCGAATCAATGCTAAGTATATAAGGGAATCACCAATTCACCCTGgtaaggccttgcaatttgcttttgtttgtgtactatcaaggcccagaagt Alignment from Exonerate_coding2genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG gcagttggtcgaactcggattctatgaactgagacctatcccacccacagGGACCATGGTTCATGCCTTCTCGAATCAATGCTAAGTATATAAGGGAATCACCAATTCACCCTGgtaaggccttgcaatttgcttttgtttgtgtactatcaaggcccagaagt Alignment from GeneWise GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG gcagttggtcgaactcggattctatgaactgagacctatcccacccacagGGACCATGGTTCATGCCTTCTCGAATCAATGCTAAGTATATAAGGGAATCACCAATTCACCCTGgtaaggccttgcaatttgcttttgtttgtgtactatcaaggcccagaagt #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGA-GCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gctagccccagggcatgcactgatagtgtaaggtcccaccctgcccccagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCCCGGAAAGCTAAAGGTCGCACAGGTAG-GGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtgatccttcagctagttgtgatagcctaggaccagattatgattt Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gctagccccagggcatgcactgatagtgtaaggtcccaccctgcccccagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCCCGGAAAGCTAAAGGTCGCACAGGTAGGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtgatccttcagctagttgtgatagcctaggaccagattatgattt Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gctagccccagggcatgcactgatagtgtaaggtcccaccctgcccccagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCCCGGAAAGCTAAAGGTCGCACAGGTAGGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtgatccttcagctagttgtgatagcctaggaccagattatgattt Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGA-GCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gctagccccagggcatgcactgatagtgtaaggtcccaccctgcccccagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCCCGGAAAGCTAAAGGTCGCACAGGTAG-GGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtgatccttcagctagttgtgatagcctaggaccagattatgattt Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGG-AGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gctagccccagggcatgcactgatagtgtaaggtcccaccctgcccccagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCCCGGAAAGCTAAAGGTCGCACAGGTAG-GGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtgatccttcagctagttgtgatagcctaggaccagattatgattt Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gctagccccagggcatgcactgatagtgtaaggtcccaccctgcccccagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCCCGGAAAGCTAAAGGTCGCACAGGTAGGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtgatccttcagctagttgtgatagcctaggaccagattatgattt Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gctagccccagggcatgcactgatagtgtaaggtcccaccctgcccccagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCCCGGAAAGCTAAAGGTCGCACAGGTAGGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtgatccttcagctagttgtgatagcctaggaccagattatgattt Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gctagccccagggcatgcactgatagtgtaaggtcccaccctgcccccagGCCCACCTGCCTGGCTTGGTAGAACAGGCTGGAGCCCGGAAAGCTAAAGGTCGCACAGGTAGGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtgatccttcagctagttgtgatagcctaggaccagattatgattt #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTGCTA-ACCACGGAG------CGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAA---GAGGCTACTGTGTTGCACAA-AGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTA------ACCACGGAGCGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAAGAG---GCTACTGTGTTGCACAAAGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACC---ACGGAGCGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAAGAGGCTACTGTGTTGCACAAAGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCT------AACCACGGAGCGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAAG---AGGCTACTGTGTTGCACAAAGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Pairagon CTTCAAGACAAGGCTACTGTGCT-----------------AACCACGGAGCGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAAG---AGGCTACTGTGTTGCACAAAGACACAGGACAA-----------AAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Exonerate_protein2genome acctaactaatagtgatgccgatttcaggcccggctctctattttggtagcttcaagaggctactgtgttgcacaaagacacaggacaaaagaaagtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise acctaactaatagtgatgccgatttcaggcccggctctctattttggtagcttcaagaggctactgtgttgcacaaagacacaggacaaaagaaagtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ttggggccagtgtacagcaaggcaactacttcctattctgatggtaccagGGTCTACACAGTGCTCAGTATTC-CCGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACCAACAAGATTCTCACTggtaacagtgggtgtgactagtttgaatatgatagcccttgcatcctcacc Alignment from CESAR GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ttggggccagtgtacagcaaggcaactacttcctattctgatggtaccagGGTCTACACAGTGCTCAGTATTCCCGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACCAACAAGATTCTCACTggtaacagtgggtgtgactagtttgaatatgatagcccttgcatcctcacc Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ttggggccagtgtacagcaaggcaactacttcctattctgatggtaccagGGTCTACACAGTGCTCAGTATTCCCGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACCAACAAGATTCTCACTGgtaacagtgggtgtgactagtttgaatatgatagcccttgcatcctcacc Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ttggggccagtgtacagcaaggcaactacttcctattctgatggtaccagGGTCTACACAGTGCTCAGTATTCCCGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACCAACAAGATTCTCACTGgtaacagtgggtgtgactagtttgaatatgatagcccttgcatcctcacc Alignment from Pairagon GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ttggggccagtgtacagcaaggcaactacttcctattctgatggtaccagGGTCTACACAGTGCTCAGTATTCCC-GGATCCTTGCTCTTGACCTCTGTCCCTCAGACACCAACAAGATTCTCACTGgtaacagtgggtgtgactagtttgaatatgatagcccttgcatcctcacc Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ttggggccagtgtacagcaaggcaactacttcctattctgatggtaccagGGTCTACACAGTGCTCAGTATTCCCGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACCAACAAGATTCTCACTGgtaacagtgggtgtgactagtttgaatatgatagcccttgcatcctcacc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ttggggccagtgtacagcaaggcaactacttcctattctgatggtaccagGGTCTACACAGTGCTCAGTATTCCCGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACCAACAAGATTCTCACTGgtaacagtgggtgtgactagtttgaatatgatagcccttgcatcctcacc #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACA-GATGAGACCTCCGGCTGCt acttaaagtgccagactgtgttcaaatgtgatagcctgggctctttatagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGCAACACGATG-GACCTCTGGCTGCtgtgtgtgattacttaaccaccatccgctatcttattatggtggtagtttg Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt acttaaagtgccagactgtgttcaaatgtgatagcctgggctctttatagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGCAACACGATGGACCTCTGGCTGCtgtgtgtgattacttaaccaccatccgctatcttattatggtggtagtttg Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT acttaaagtgccagactgtgttcaaatgtgatagcctgggctctttatagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGCAACACGATGGACCTCTGGCTGCTgtgtgtgattacttaaccaccatccgctatcttattatggtggtagtttg Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACA-GATGAGACCTCCGGCTGCT acttaaagtgccagactgtgttcaaatgtgatagcctgggctctttatagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGCAACACGATG-GACCTCTGGCTGCTgtgtgtgattacttaaccaccatccgctatcttattatggtggtagtttg Alignment from Pairagon TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACA-GATGAGACCTCCGGCTGCT acttaaagtgccagactgtgttcaaatgtgatagcctgggctctttatagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGCAACACGATG-GACCTCTGGCTGCTgtgtgtgattacttaaccaccatccgctatcttattatggtggtagtttg Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT acttaaagtgccagactgtgttcaaatgtgatagcctgggctctttatagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGCAACACGATGGACCTCTGGCTGCTgtgtgtgattacttaaccaccatccgctatcttattatggtggtagtttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT acttaaagtgccagactgtgttcaaatgtgatagcctgggctctttatagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGCAACACGATGGACCTCTGGCTGCTgtgtgtgattacttaaccaccatccgctatcttattatggtggtagtttg #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCC-AACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tagtattttctctcatagtcaattgacattctattaattgctctggacagGAGCACACTAATGTCGTACATCT-CCCT------GCTGGGCCTATCACCACCATTGTATTCTCTGAAAATGGGTACTACTTGGCCACATCAACAGATGATCCTCCAGTCAAGCTTTGGGAAAACATACAGAAGCTGAAAAACTTTAAAATGTTGCAGTTGCACAATAACTTTGAGgtaagacacttgatcccttttcttctctttcgcagttcttgtgctacccc Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tagtattttctctcatagtcaattgacattctattaattgctctggacagGAGCACACTAATGTCGTACATCTCCCT------GCTGGGCCTATCACCACCATTGTATTCTCTGAAAATGGGTACTACTTGGCCACATCAACAGATGATCCTCCAGTCAAGCTTTGGGAAAACATACAGAAGCTGAAAAACTTTAAAATGTTGCAGTTGCACAATAACTTTGAGgtaagacacttgatcccttttcttctctttcgcagttcttgtgctacccc Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tagtattttctctcatagtcaattgacattctattaattgctctggacagGAGCACACTAATGTCGTACATCTCCCT------GCTGGGCCTATCACCACCATTGTATTCTCTGAAAATGGGTACTACTTGGCCACATCAACAGATGATCCTCCAGTCAAGCTTTGGGAAAACATACAGAAGCTGAAAAACTTTAAAATGTTGCAGTTGCACAATAACTTTGAGgtaagacacttgatcccttttcttctctttcgcagttcttgtgctacccc Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGA---CTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tagtattttctctcatagtcaattgacattctattaattgctctggacagGAGCACACTAATGTCGTACATCTCCCTG------CTGGGCCTATCACCACCATTGTATTCTCTGAAAATGGGTACTACTTGGCCACATCAACAGATGATCCTCCAGTCAAGCTTTGGGAAAACATACAGAAGCTGAAAAACTTTAAAATGTTGCAGTTGCACAATAACTTTGAGgtaagacacttgatcccttttcttctctttcgcagttcttgtgctacccc Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGG---ACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tagtattttctctcatagtcaattgacattctattaattgctctggacagGAGCACACTAATGTCGTACATCTCCCTG------CTGGGCCTATCACCACCATTGTATTCTCTGAAAATGGGTACTACTTGGCCACATCAACAGATGATCCTCCAGTCAAGCTTTGGGAAAACATACAGAAGCTGAAAAACTTTAAAATGTTGCAGTTGCACAATAACTTTGAGgtaagacacttgatcccttttcttctctttcgcagttcttgtgctacccc Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tagtattttctctcatagtcaattgacattctattaattgctctggacagGAGCACACTAATGTCGTACATCTCCCT------GCTGGGCCTATCACCACCATTGTATTCTCTGAAAATGGGTACTACTTGGCCACATCAACAGATGATCCTCCAGTCAAGCTTTGGGAAAACATACAGAAGCTGAAAAACTTTAAAATGTTGCAGTTGCACAATAACTTTGAGgtaagacacttgatcccttttcttctctttcgcagttcttgtgctacccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGAC---TTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tagtattttctctcatagtcaattgacattctattaattgctctggacagGAGCACACTAATGTCGTACATCTCCCT------GCTGGGCCTATCACCACCATTGTATTCTCTGAAAATGGGTACTACTTGGCCACATCAACAGATGATCCTCCAGTCAAGCTTTGGGAAAACATACAGAAGCTGAAAAACTTTAAAATGTTGCAGTTGCACAATAACTTTGAGgtaagacacttgatcccttttcttctctttcgcagttcttgtgctacccc #### Pygm_ID1691_15 --> 2 - 0 Original Alignment gcATCAAAAGGGAGCCCAATAGGTTTATGGTG-CCGAGGACTATCATGATTGGAGGCAAG attttccatattcagagcaagattgactatcattttctttttccttgtaggaATAAAAAGGGAGCTCAATCGGTTCATGGTGCCCAAAGA-TATCATGATTGGAGGGAAAgtaagcatcgacctatgcatgaaaaaaggagattgatagtcgagaattaa Alignment from CESAR gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG attttccatattcagagcaagattgactatcattttctttttccttgtaggaATAAAAAGGGAGCTCAATCGGTTCATGGTGCCCAAAGATATCATGATTGGAGGGAAAgtaagcatcgacctatgcatgaaaaaaggagattgatagtcgagaattaa Alignment from Spaln_aa2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG attttccatattcagagcaagattgactatcattttctttttccttgtagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCCAAAGATATCATGATTGGAGGGAAAgtaagcatcgacctatgcatgaaaaaaggagattgatagtcgagaattaa Alignment from Spaln_nt2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG attttccatattcagagcaagattgactatcattttctttttccttgtagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCCAAAGATATCATGATTGGAGGGAAAgtaagcatcgacctatgcatgaaaaaaggagattgatagtcgagaattaa Alignment from Pairagon GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG attttccatattcagagcaagattgactatcattttctttttccttgtagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCCAAAGATATCATGATTGGAGGGAAAgtaagcatcgacctatgcatgaaaaaaggagattgatagtcgagaattaa Alignment from Exonerate_protein2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG attttccatattcagagcaagattgactatcattttctttttccttgtagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCCAAAGATATCATGATTGGAGGGAAAgtaagcatcgacctatgcatgaaaaaaggagattgatagtcgagaattaa Alignment from Exonerate_coding2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG attttccatattcagagcaagattgactatcattttctttttccttgtagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCCAAAGATATCATGATTGGAGGGAAAgtaagcatcgacctatgcatgaaaaaaggagattgatagtcgagaattaa Alignment from GeneWise GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG attttccatattcagagcaagattgactatcattttctttttccttgtagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCCAAAGATATCATGATTGGAGGGAAAgtaagcatcgacctatgcatgaaaaaaggagattgatagtcgagaattaa #### Pygm_ID1692_16 --> 0 - 1 Original Alignment GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCT-GCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAg agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGCACAG-GGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGggtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from CESAR GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAg agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGCACAGGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGggtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Spaln_aa2Genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGCACAGGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Spaln_nt2Genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAAT---AGATGTGGTCAATCATGACCCGCACAGGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Pairagon GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTA----GGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAAT---AGATGTGGTCAATCATGACCC----GCACAGGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Exonerate_protein2genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGCACAGGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Exonerate_coding2genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGCACAGGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from GeneWise GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGCACAGGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGC-AAAACCATCAAACTGCAGATT gccaggtgttggcttgtttccatctcagctctgtgtgctttgacatttagGATGATACTCACACAGAGAGTTACATCAGCACCATTGGGGTTGATTTTAAGATACGGACAATTAAACTGGATGGCCAAAATCA-CAAACTACAGATTgtacggtctaatatgctcctgttttcttgttgccactgattctccttccg Alignment from CESAR GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccaggtgttggcttgtttccatctcagctctgtgtgctttgacatttagGATGATACTCACACAGAGAGTTACATCAGCACCATTGGGGTTGATTTTAAGATACGGACAATTAAACTGGATGGCCAAAATCACAAACTACAGATTgtacggtctaatatgctcctgttttcttgttgctctgaggaccccttcct Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccaggtgttggcttgtttccatctcagctctgtgtgctttgacatttagGATGATACTCACACAGAGAGTTACATCAGCACCATTGGGGTTGATTTTAAGATACGGACAATTAAACTGGATGGCCAAAATCACAAACTACAGATTgtacggtctaatatgctcctgttttcttgttgccactgattctccttccg Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccaggtgttggcttgtttccatctcagctctgtgtgctttgacatttagGATGATACTCACACAGAGAGTTACATCAGCACCATTGGGGTTGATTTTAAGATACGGACAATTAAACTGGATGGCCAAAATCACAAACTACAGATTgtacggtctaatatgctcctgttttcttgttgccactgattctccttccg Alignment from Pairagon GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccaggtgttggcttgtttccatctcagctctgtgtgctttgacatttagGATGATACTCACACAGAGAGTTACATCAGCACCATTGGGGTTGATTTTAAGATACGGACAATTAAACTGGATGGCCAAAATCACAAACTACAGATTgtacggtctaatatgctcctgttttcttgttgccactgattctccttccg Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccaggtgttggcttgtttccatctcagctctgtgtgctttgacatttagGATGATACTCACACAGAGAGTTACATCAGCACCATTGGGGTTGATTTTAAGATACGGACAATTAAACTGGATGGCCAAAATCACAAACTACAGATTgtacggtctaatatgctcctgttttcttgttgccactgattctccttccg Alignment from Exonerate_coding2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccaggtgttggcttgtttccatctcagctctgtgtgctttgacatttagGATGATACTCACACAGAGAGTTACATCAGCACCATTGGGGTTGATTTTAAGATACGGACAATTAAACTGGATGGCCAAAATCACAAACTACAGATTgtacggtctaatatgctcctgttttcttgttgccactgattctccttccg Alignment from GeneWise GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccaggtgttggcttgtttccatctcagctctgtgtgctttgacatttagGATGATACTCACACAGAGAGTTACATCAGCACCATTGGGGTTGATTTTAAGATACGGACAATTAAACTGGATGGCCAAAATCACAAACTACAGATTgtacggtctaatatgctcctgttttcttgttgccactgattctccttccg #### Rab3il1_ID2647_3 --> 0 - 0 Original Alignment GAGCTGAAGCTAAAGGATGAAGAGTGTGAA-CGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACCGACTTTGCA-AGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacagtgatgt Alignment from CESAR GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACCGACTTTGCAAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacagctttct Alignment from Spaln_aa2Genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACCGACTTTGCAAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacagtgatgt Alignment from Spaln_nt2Genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGG-CTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACCGACTTTGC-AAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacagtgatgt Alignment from Pairagon GAGCTGAAGCTAAAGGATGAAGAGTGTGAA-CGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGT------------------------------------------------------- gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACCGACTTTGC-AAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAGTCAGTCTGATCCCCTGGGTTAACAACTCCTGGTGCTTTTACAGTGATGT Alignment from Exonerate_protein2genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACCGACTTTGCAAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacagtgatgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACCGACTTTGCAAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacagtgatgt #### Rasgrp2_ID1704_3 --> 1 - 2 Original Alignment cTATCAGCAATCCCGGAAGGACAACTCC-AATTCTCTACAGATGAAAACGTGTCACTTGGTCag gcagtaagtataaagcatatgcttaccttgtcccttttctataccttcagcTATCAACAATCCCAGAAGGATAACTCTCAATTCCC-ACAGATGAAAACATGTCACCTTGTCaggtaactctggtccctaaggtgaatcttggtcaaggcaggtgcaaggtcca Alignment from CESAR cTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCag gcagtaagtataaagcatatgcttaccttgtcccttttctataccttcagcTATCAACAATCCCAGAAGGATAACTCTCAATTCCCACAGATGAAAACATGTCACCTTGTCaggtaactctggtccctaaggtgaatcttggtcaaggcaggtgcaaggtcca Alignment from Spaln_aa2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcttaccttgtcccttttctataccttcagCTATCAACAATCCCAGAAGGATAACTCTCAATTCCCACAGATGAAAACATGTCACCTTGTCAGgtaactctggtccctaaggtgaatcttggtcaaggcaggtgcaaggtcca Alignment from Spaln_nt2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcttaccttgtcccttttctataccttcagCTATCAACAATCCCAGAAGGATAACTCTCAATTCCCACAGATGAAAACATGTCACCTTGTCAGgtaactctggtccctaaggtgaatcttggtcaaggcaggtgcaaggtcca Alignment from Pairagon CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcttaccttgtcccttttctataccttcagCTATCAACAATCCCAGAAGGATAACTCTCAATTCCCACAGATGAAAACATGTCACCTTGTCAGgtaactctggtccctaaggtgaatcttggtcaaggcaggtgcaaggtcca Alignment from Exonerate_protein2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcttaccttgtcccttttctataccttcagCTATCAACAATCCCAGAAGGATAACTCTCAATTCCCACAGATGAAAACATGTCACCTTGTCAGgtaactctggtccctaaggtgaatcttggtcaaggcaggtgcaaggtcca Alignment from Exonerate_coding2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcttaccttgtcccttttctataccttcagCTATCAACAATCCCAGAAGGATAACTCTCAATTCCCACAGATGAAAACATGTCACCTTGTCAGgtaactctggtccctaaggtgaatcttggtcaaggcaggtgcaaggtcca Alignment from GeneWise CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcttaccttgtcccttttctataccttcagCTATCAACAATCCCAGAAGGATAACTCTCAATTCCCACAGATGAAAACATGTCACCTTGTCAGgtaactctggtccctaaggtgaatcttggtcaaggcaggtgcaaggtcca #### Rasgrp2_ID1706_5 --> 1 - 0 Original Alignment cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAG-CCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG tgcattatggattaataaattactgccttatttatttattgcttttgcagcCCTACTTATAAATGGAAGCGGCAGGGGACCCAGCGGAACCTTGTGGAACAGAAGAAACCCAAGATGTCCTTATTGTTTGATCACTTGGAGCCTGATGG-GCTTGCTGAACATCTAACCTACCTGGGGTATCGTTCCTTCTGCAAAATACTGgtgagagttgaaggtctggttgtgggtatcaggcaggtcttttcaagtag Alignment from CESAR cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG tgcattatggattaataaattactgccttatttatttattgcttttgcagcCCTACTTATAAATGGAAGCGGCAGGGGACCCAGCGGAACCTTGTGGAACAGAAGAAACCCAAGATGTCCTTATTGTTTGATCACTTGGAGCCTGATGGGCTTGCTGAACATCTAACCTACCTGGGGTATCGTTCCTTCTGCAAAATACTGgtgagagttgaaggtctggttgtgggtatcaggcaggtcttttcaagtag Alignment from Spaln_aa2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG tgcattatggattaataaattactgccttatttatttattgcttttgcagCCCTACTTATAAATGGAAGCGGCAGGGGACCCAGCGGAACCTTGTGGAACAGAAGAAACCCAAGATGTCCTTATTGTTTGATCACTTGGAGCCTGATGGGCTTGCTGAACATCTAACCTACCTGGGGTATCGTTCCTTCTGCAAAATACTGgtgagagttgaaggtctggttgtgggtatcaggcaggtcttttcaagtag Alignment from Spaln_nt2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG tgcattatggattaataaattactgccttatttatttattgcttttgcagCCCTACTTATAAATGGAAGCGGCAGGGGACCCAGCGGAACCTTGTGGAACAGAAGAAACCCAAGATGTCCTTATTGTTTGATCACTTGGAGCCTGATGGGCTTGCTGAACATCTAACCTACCTGGGGTATCGTTCCTTCTGCAAAATACTGgtgagagttgaaggtctggttgtgggtatcaggcaggtcttttcaagtag Alignment from Pairagon CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG tgcattatggattaataaattactgccttatttatttattgcttttgcagCCCTACTTATAAATGGAAGCGGCAGGGGACCCAGCGGAACCTTGTGGAACAGAAGAAACCCAAGATGTCCTTATTGTTTGATCACTTGGAGCCTGATGGGCTTGCTGAACATCTAACCTACCTGGGGTATCGTTCCTTCTGCAAAATACTGgtgagagttgaaggtctggttgtgggtatcaggcaggtcttttcaagtag Alignment from Exonerate_protein2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG tgcattatggattaataaattactgccttatttatttattgcttttgcagCCCTACTTATAAATGGAAGCGGCAGGGGACCCAGCGGAACCTTGTGGAACAGAAGAAACCCAAGATGTCCTTATTGTTTGATCACTTGGAGCCTGATGGGCTTGCTGAACATCTAACCTACCTGGGGTATCGTTCCTTCTGCAAAATACTGgtgagagttgaaggtctggttgtgggtatcaggcaggtcttttcaagtag Alignment from Exonerate_coding2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG tgcattatggattaataaattactgccttatttatttattgcttttgcagCCCTACTTATAAATGGAAGCGGCAGGGGACCCAGCGGAACCTTGTGGAACAGAAGAAACCCAAGATGTCCTTATTGTTTGATCACTTGGAGCCTGATGGGCTTGCTGAACATCTAACCTACCTGGGGTATCGTTCCTTCTGCAAAATACTGgtgagagttgaaggtctggttgtgggtatcaggcaggtcttttcaagtag Alignment from GeneWise CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG tgcattatggattaataaattactgccttatttatttattgcttttgcagCCCTACTTATAAATGGAAGCGGCAGGGGACCCAGCGGAACCTTGTGGAACAGAAGAAACCCAAGATGTCCTTATTGTTTGATCACTTGGAGCCTGATGGGCTTGCTGAACATCTAACCTACCTGGGGTATCGTTCCTTCTGCAAAATACTGgtgagagttgaaggtctggttgtgggtatcaggcaggtcttttcaagtag #### Rasgrp2_ID1708_7 --> 0 - 0 Original Alignment AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCC-ATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG acaaaccatttgtaaacttggggtaagggggtttgtttgtttcctcttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGCTGGAGGTCTAAGCCATAGCTCCCACAT-TCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtgagtagttcattggactgtggctggggattgagtaatgtcagagtgta Alignment from CESAR AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG acaaaccatttgtaaacttggggtaagggggtttgtttgtttcctcttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGCTGGAGGTCTAAGCCATAGCTCCCACATTCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtgagtagttcattggactgtggctggggattgagtaatgtcagagtgta Alignment from Spaln_aa2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG acaaaccatttgtaaacttggggtaagggggtttgtttgtttcctcttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGCTGGAGGTCTAAGCCATAGCTCCCACATTCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtgagtagttcattggactgtggctggggattgagtaatgtcagagtgta Alignment from Spaln_nt2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG acaaaccatttgtaaacttggggtaagggggtttgtttgtttcctcttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGCTGGAGGTCTAAGCCATAGCTCCCACATTCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtgagtagttcattggactgtggctggggattgagtaatgtcagagtgta Alignment from Pairagon AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG acaaaccatttgtaaacttggggtaagggggtttgtttgtttcctcttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGCTGGAGGTCTAAGCCATAGCTCCCACATTCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtgagtagttcattggactgtggctggggattgagtaatgtcagagtgta Alignment from Exonerate_protein2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG acaaaccatttgtaaacttggggtaagggggtttgtttgtttcctcttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGCTGGAGGTCTAAGCCATAGCTCCCACATTCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtgagtagttcattggactgtggctggggattgagtaatgtcagagtgta Alignment from Exonerate_coding2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG acaaaccatttgtaaacttggggtaagggggtttgtttgtttcctcttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGCTGGAGGTCTAAGCCATAGCTCCCACATTCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtgagtagttcattggactgtggctggggattgagtaatgtcagagtgta Alignment from GeneWise AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG acaaaccatttgtaaacttggggtaagggggtttgtttgtttcctcttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGCTGGAGGTCTAAGCCATAGCTCCCACATTCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtgagtagttcattggactgtggctggggattgagtaatgtcagagtgta #### Rcor2_ID2093_4 --> 0 - 0 Original Alignment GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAG-AAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtcaataaaaatgtcgtttgcctttcagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGCAAATCAC-AGCTGACCTGGCCAACTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGTTCCATGGCAAGTGCTTTCAGCGTATCCAGCAAATGgtgggacttagttctccttgaataccccccagccttgttgcccatcctcc Alignment from CESAR GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtcaataaaaatgtcgtttgcctttcagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGCAAATCACAGCTGACCTGGCCAACTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGTTCCATGGCAAGTGCTTTCAGCGTATCCAGCAAATGgtgggacttagttctccttgaataccccccagccttgttgcccatcctcc Alignment from Spaln_aa2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtcaataaaaatgtcgtttgcctttcagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGCAAATCACAGCTGACCTGGCCAACTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGTTCCATGGCAAGTGCTTTCAGCGTATCCAGCAAATGgtgggacttagttctccttgaataccccccagccttgttgcccatcctcc Alignment from Spaln_nt2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtcaataaaaatgtcgtttgcctttcagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGCAAATCACAGCTGACCTGGCCAACTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGTTCCATGGCAAGTGCTTTCAGCGTATCCAGCAAATGgtgggacttagttctccttgaataccccccagccttgttgcccatcctcc Alignment from Pairagon GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAG-AAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtcaataaaaatgtcgtttgcctttcagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGCAAATCAC-AGCTGACCTGGCCAACTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGTTCCATGGCAAGTGCTTTCAGCGTATCCAGCAAATGgtgggacttagttctccttgaataccccccagccttgttgcccatcctcc Alignment from Exonerate_protein2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtcaataaaaatgtcgtttgcctttcagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGCAAATCACAGCTGACCTGGCCAACTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGTTCCATGGCAAGTGCTTTCAGCGTATCCAGCAAATGgtgggacttagttctccttgaataccccccagccttgttgcccatcctcc Alignment from Exonerate_coding2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtcaataaaaatgtcgtttgcctttcagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGCAAATCACAGCTGACCTGGCCAACTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGTTCCATGGCAAGTGCTTTCAGCGTATCCAGCAAATGgtgggacttagttctccttgaataccccccagccttgttgcccatcctcc Alignment from GeneWise GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG aagtttagcattgacctgcacagtcaataaaaatgtcgtttgcctttcagGCACTTGGTATGCTTCTGTGGCATAAACATGATGTTGAGCAAATCACAGCTGACCTGGCCAACTTCACTCCCTTTCCTGATGAGTGGACAGTGGAAGATAAGGTGTTGTTAGAGCAAGCCTTTGGGTTCCATGGCAAGTGCTTTCAGCGTATCCAGCAAATGgtgggacttagttctccttgaataccccccagccttgttgcccatcctcc #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGT-CGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag tgcccatcctccatgcacatcattctagttctggtgatttgcttctttagCTTCCTGATAAGATCATTCCAAGCCTTGTGAAATACTATTACTCTTGGAAGAAGACTCGTAGTCCAAA-TAGTGTAATGGATAGGCAGTCAAGGCGGTTGAGCGGCCATCAGGACAAAGAAGATaggtaaggagtttagtttgagacttgggggaatgataatggagtgattacat Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag tgcccatcctccatgcacatcattctagttctggtgatttgcttctttagCTTCCTGATAAGATCATTCCAAGCCTTGTGAAATACTATTACTCTTGGAAGAAGACTCGTAGTCCAAATAGTGTAATGGATAGGCAGTCAAGGCGGTTGAGCGGCCATCAGGACAAAGAAGATaggtaaggagtttagtttgagacttgggggaatgataatggagtgatactct Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tgcccatcctccatgcacatcattctagttctggtgatttgcttctttagCTTCCTGATAAGATCATTCCAAGCCTTGTGAAATACTATTACTCTTGGAAGAAGACTCGTAGTCCAAATAGTGTAATGGATAGGCAGTCAAGGCGGTTGAGCGGCCATCAGGACAAAGAAGATAGgtaaggagtttagtttgagacttgggggaatgataatggagtgattacat Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tgcccatcctccatgcacatcattctagttctggtgatttgcttctttagCTTCCTGATAAGATCATTCCAAGCCTTGTGAAATACTATTACTCTTGGAAGAAGACTCGTAGTCCAAATAGTGTAATGGATAGGCAGTCAAGGCGGTTGAGCGGCCATCAGGACAAAGAAGATAGgtaaggagtttagtttgagacttgggggaatgataatggagtgattacat Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tgcccatcctccatgcacatcattctagttctggtgatttgcttctttagCTTCCTGATAAGATCATTCCAAGCCTTGTGAAATACTATTACTCTTGGAAGAAGACTCGTAGTCCAAATAGTGTAATGGATAGGCAGTCAAGGCGGTTGAGCGGCCATCAGGACAAAGAAGATAGgtaaggagtttagtttgagacttgggggaatgataatggagtgattacat Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tgcccatcctccatgcacatcattctagttctggtgatttgcttctttagCTTCCTGATAAGATCATTCCAAGCCTTGTGAAATACTATTACTCTTGGAAGAAGACTCGTAGTCCAAATAGTGTAATGGATAGGCAGTCAAGGCGGTTGAGCGGCCATCAGGACAAAGAAGATAGgtaaggagtttagtttgagacttgggggaatgataatggagtgattacat Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tgcccatcctccatgcacatcattctagttctggtgatttgcttctttagCTTCCTGATAAGATCATTCCAAGCCTTGTGAAATACTATTACTCTTGGAAGAAGACTCGTAGTCCAAATAGTGTAATGGATAGGCAGTCAAGGCGGTTGAGCGGCCATCAGGACAAAGAAGATAGgtaaggagtttagtttgagacttgggggaatgataatggagtgattacat Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG tgcccatcctccatgcacatcattctagttctggtgatttgcttctttagCTTCCTGATAAGATCATTCCAAGCCTTGTGAAATACTATTACTCTTGGAAGAAGACTCGTAGTCCAAATAGTGTAATGGATAGGCAGTCAAGGCGGTTGAGCGGCCATCAGGACAAAGAAGATAGgtaaggagtttagtttgagacttgggggaatgataatggagtgattacat #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTAT-CGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggagtggccaactgttttgttcaaaaaaaaatattatgtgtttttagccCTTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACATTCTTTGTGAGCTATCCGCCGCCTCT-TAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtgagtgacctctccgtggaatgtgtgtggctttacatcctagGTACAAA Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggagtggccaactgttttgttcaaaaaaaaatattatgtgtttttagccCTTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACATTCTTTGTGAGCTATCCGCCGCCTCTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtgagtgacctctccgtggaagtatgctctctgtttcccacagGTACAAA Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggagtggccaactgttttgttcaaaaaaaaatattatgtgtttttagCCCTTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACATTCTTTGTGAGCTATCCGCCGCCTCTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtgagtgacctctccgtggaatgtgtgtggctttacatcctagGTACAAA Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggagtggccaactgttttgttcaaaaaaaaatattatgtgtttttagCCCTTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACATTCTTTGTGAGCTATCCGCCGCCTCTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtgagtgacctctccgtggaatgtgtgtggctttacatcctagGTACAAA Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTC--AACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggagtggccaactgttttgttcaaaaaaaaatattatgtgtttttagCCCTTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACATTCTTTGTGAGCTATC--CGCCGCCTCTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtgagtgacctctccgtggaatgtgtgtggctttacatcctagGTACAAA Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggagtggccaactgttttgttcaaaaaaaaatattatgtgtttttagCCCTTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACATTCTTTGTGAGCTATCCGCCGCCTCTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtgagtgacctctccgtggaatgtgtgtggctttacatcctagGTACAAA Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAGGTCCAGATTACATCTGTC agaggagtggccaactgttttgttcaaaaaaaaatattatgtgtttttagCCCTTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACATTCTTTGTGAGCTATCCGCCGCCTCTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGGTGAGTGACCTCTCCGTGgaatgtgtgtggctttacatcctaggtacaaa Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG GTCCAGA agaggagtggccaactgttttgttcaaaaaaaaatattatgtgtttttagCCCTTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGAAACAAGACCCTGACCCAAGTGAAGACATTCTTTGTGAGCTATCCGCCGCCTCTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCCCTAGTCCCCACAGAAGAGGCCCGGCAAGGGGCTCCTGTTTCAACCACAGCCCTTGAAGAGGATGATAAGgtgagtgacctctccgtggaatgtgtgtggctttacatcctagGTACAAA #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCT-GACCTCTGCCCAGACCGCAGTATCCATag tggtatcatgtgcatagatcctcctgtcccacaccgtatctgttctgcagATCAACGGCTACTCAGGTCCAGGAACAGTTCGAATCTCTCTGGTTACCAAGGACCCACCTCACCGCCCGCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTCGATCTATGCC-GGACCGCAGTATCCATaggtaaactatttgtggcatgatggaaatcctaaacatgaagcaattattat Alignment from CESAR ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag tggtatcatgtgcatagatcctcctgtcccacaccgtatctgttctgcagATCAACGGCTACTCAGGTCCAGGAACAGTTCGAATCTCTCTGGTTACCAAGGACCCACCTCACCGCCCGCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTCGATCTATGCCGGACCGCAGTATCCATaggtaaactatttgtggcatgatggaaatcctaaacatgaagcaattattat Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tggtatcatgtgcatagatcctcctgtcccacaccgtatctgttctgcagATCAACGGCTACTCAGGTCCAGGAACAGTTCGAATCTCTCTGGTTACCAAGGACCCACCTCACCGCCCGCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTCGATCTATGCCGGACCGCAGTATCCATAGgtaaactatttgtggcatgatggaaatcctaaacatgaagcaattattat Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tggtatcatgtgcatagatcctcctgtcccacaccgtatctgttctgcagATCAACGGCTACTCAGGTCCAGGAACAGTTCGAATCTCTCTGGTTACCAAGGACCCACCTCACCGCCCGCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTCGATCTATGCCGGACCGCAGTATCCATAGgtaaactatttgtggcatgatggaaatcctaaacatgaagcaattattat Alignment from Pairagon ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCT-GACCTCTGCCCAGACCGCAGTATCCATAG tggtatcatgtgcatagatcctcctgtcccacaccgtatctgttctgcagATCAACGGCTACTCAGGTCCAGGAACAGTTCGAATCTCTCTGGTTACCAAGGACCCACCTCACCGCCCGCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTCGATCTATGCC-GGACCGCAGTATCCATAGgtaaactatttgtggcatgatggaaatcctaaacatgaagcaattattat Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tggtatcatgtgcatagatcctcctgtcccacaccgtatctgttctgcagATCAACGGCTACTCAGGTCCAGGAACAGTTCGAATCTCTCTGGTTACCAAGGACCCACCTCACCGCCCGCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTCGATCTATGCCGGACCGCAGTATCCATAGgtaaactatttgtggcatgatggaaatcctaaacatgaagcaattattat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tggtatcatgtgcatagatcctcctgtcccacaccgtatctgttctgcagATCAACGGCTACTCAGGTCCAGGAACAGTTCGAATCTCTCTGGTTACCAAGGACCCACCTCACCGCCCGCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTCGATCTATGCCGGACCGCAGTATCCATAGgtaaactatttgtggcatgatggaaatcctaaacatgaagcaattattat #### Rela_ID1128_5 --> 1 - 1 Original Alignment cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGAC-CTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg gagaacatgctttccatagcaaatctaatttttttcctgtcctcttgcagcTTCCAGAATTTAGGCATACAGTGTGTGAAAAAACGTGACCCTGGCAC-AGCAATAAGTCAGCGAATTCAGACTACCAATAACTCATTTCACggtaagcagcagggcggaaaggaattccatctctatataggccattaatct Alignment from CESAR cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg gagaacatgctttccatagcaaatctaatttttttcctgtcctcttgcagcTTCCAGAATTTAGGCATACAGTGTGTGAAAAAACGTGACCCTGGCACAGCAATAAGTCAGCGAATTCAGACTACCAATAACTCATTTCACggtaagcagcagggcggaaaggaattccatctctatataggccattaatct Alignment from Spaln_aa2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG gagaacatgctttccatagcaaatctaatttttttcctgtcctcttgcagCTTCCAGAATTTAGGCATACAGTGTGTGAAAAAACGTGACCCTGGCACAGCAATAAGTCAGCGAATTCAGACTACCAATAACTCATTTCACGgtaagcagcagggcggaaaggaattccatctctatataggccattaatct Alignment from Spaln_nt2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG gagaacatgctttccatagcaaatctaatttttttcctgtcctcttgcagCTTCCAGAATTTAGGCATACAGTGTGTGAAAAAACGTGACCCTGGCACAGCAATAAGTCAGCGAATTCAGACTACCAATAACTCATTTCACGgtaagcagcagggcggaaaggaattccatctctatataggccattaatct Alignment from Pairagon CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG gagaacatgctttccatagcaaatctaatttttttcctgtcctcttgcagCTTCCAGAATTTAGGCATACAGTGTGTGAAAAAACGTGACCCTGGCACAGCAATAAGTCAGCGAATTCAGACTACCAATAACTCATTTCACGgtaagcagcagggcggaaaggaattccatctctatataggccattaatct Alignment from Exonerate_protein2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG gagaacatgctttccatagcaaatctaatttttttcctgtcctcttgcagCTTCCAGAATTTAGGCATACAGTGTGTGAAAAAACGTGACCCTGGCACAGCAATAAGTCAGCGAATTCAGACTACCAATAACTCATTTCACGgtaagcagcagggcggaaaggaattccatctctatataggccattaatct Alignment from Exonerate_coding2genome gagaacatgctttccatagcaaatctaatttttttcctgtcctcttgcagcttccagaatttaggcatacagtgtgtgaaaaaacgtgaccctggcacagcaataagtcagcgaattcagactaccaataactcatttcacggtaagcagcagggcggaaaggaattccatctctatataggccattaatct Alignment from GeneWise CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG gagaacatgctttccatagcaaatctaatttttttcctgtcctcttgcagCTTCCAGAATTTAGGCATACAGTGTGTGAAAAAACGTGACCCTGGCACAGCAATAAGTCAGCGAATTCAGACTACCAATAACTCATTTCACGgtaagcagcagggcggaaaggaattccatctctatataggccattaatct #### Rin1_ID808_3 --> 0 - 1 Original Alignment G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCA-GAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg GgtaagactcttagttacaagatcttaaaggttagcctttccttttatagACATTTGTTATATGCAAATACAACACTCGACAGTGCCAAGCTCTGTGTGTACGGTTACCACGAACCTA-TGGCCCAGCTTTTGTCTCTAGTCACTATATTGAGGAAGGTACTGGTggtaggaaaggtaataagtggggacacgtgtccctaggcacatgcatgaga Alignment from CESAR G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg GgtaagcctcttagttacaagatcttaaaggttagcctttccttttatagACATTTGTTATATGCAAATACAACACTCGACAGTGCCAAGCTCTGTGTGTACGGTTACCACGAACCTATGGCCCAGCTTTTGTCTCTAGTCACTATATTGAGGAAGGTACTGGTggtaggaaaggtaataagtggggacacgtgtccctaggcacatgcatgaga Alignment from Spaln_aa2Genome G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaagactcttagttacaagatcttaaaggttagcctttccttttatagACATTTGTTATATGCAAATACAACACTCGACAGTGCCAAGCTCTGTGTGTACGGTTACCACGAACCTATGGCCCAGCTTTTGTCTCTAGTCACTATATTGAGGAAGGTACTGGTGgtaggaaaggtaataagtggggacacgtgtccctaggcacatgcatgaga Alignment from Spaln_nt2Genome G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaagactcttagttacaagatcttaaaggttagcctttccttttatagACATTTGTTATATGCAAATACAACACTCGACAGTGCCAAGCTCTGTGTGTACGGTTACCACGAACCTATGGCCCAGCTTTTGTCTCTAGTCACTATATTGAGGAAGGTACTGGTGgtaggaaaggtaataagtggggacacgtgtccctaggcacatgcatgaga Alignment from Pairagon G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaagactcttagttacaagatcttaaaggttagcctttccttttatagACATTTGTTATATGCAAATACAACACTCGACAGTGCCAAGCTCTGTGTGTACGGTTACCACGAACCTATGGCCCAGCTTTTGTCTCTAGTCACTATATTGAGGAAGGTACTGGTGgtaggaaaggtaataagtggggacacgtgtccctaggcacatgcatgaga Alignment from Exonerate_protein2genome G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaagactcttagttacaagatcttaaaggttagcctttccttttatagACATTTGTTATATGCAAATACAACACTCGACAGTGCCAAGCTCTGTGTGTACGGTTACCACGAACCTATGGCCCAGCTTTTGTCTCTAGTCACTATATTGAGGAAGGTACTGGTGgtaggaaaggtaataagtggggacacgtgtccctaggcacatgcatgaga Alignment from Exonerate_coding2genome ggtaagactcttagttacaagatcttaaaggttagcctttccttttatagacatttgttatatgcaaatacaacactcgacagtgccaagctctgtgtgtacggttaccacgaacctatggcccagcttttgtctctagtcactatattgaggaaggtactggtggtaggaaaggtaataagtggggacacgtgtccctaggcacatgcatgaga Alignment from GeneWise G ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG GgtaagactcttagttacaagatcttaaaggttagcctttccttttatagACATTTGTTATATGCAAATACAACACTCGACAGTGCCAAGCTCTGTGTGTACGGTTACCACGAACCTATGGCCCAGCTTTTGTCTCTAGTCACTATATTGAGGAAGGTACTGGTGgtaggaaaggtaataagtggggacacgtgtccctaggcacatgcatgaga #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCag ttgacctgatctagctagtgctagacagtgtgttggctgctgtattacaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TACTGCCGTGCAaggtaattcagtctgtgcactgttgacccactaggccagcttagtttactca Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCag ttgacctgatctagctagtgctagacagtgtgttggctgctgtattacaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TACTGCCGTGCAaggtaattcagtctgtgcactgttgacccactaggccagcttagtttactca Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGT---ACCAG ttgacctgatctagctagtgctagacagtgtgttggctgctgtattacagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATCTACTGCCGTGCAAGGTAATTCAgtctgtgcactgttgacccactaggccagcttagtttactca Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCAG ttgacctgatctagctagtgctagacagtgtgttggctgctgtattacagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TACTGCCGTGCAAGgtaattcagtctgtgcactgttgacccactaggccagcttagtttactca Alignment from Pairagon GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCT-CATCTGTGGATACTGCCGTACCAG ttgacctgatctagctagtgctagacagtgtgttggctgctgtattacagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC------TACTGCCGTGCAAGgtaattcagtctgtgcactgttgacccactaggccagcttagtttactca Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGT ttgacctgatctagctagtgctagacagtgtgttggctgctgtattacagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATCTACTGCCGTGCAAGgtaattcagtctgtgcactgttgacccactaggccagcttagtttactca Alignment from Exonerate_coding2genome ACTATATCGAAGAGAGTACTGGCGGTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG ttgacctgatctagctagtgctagacAGTGTGTTGGCTGCTGTATTACAGGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATC-----TACTGCCGTGCAAGgtaattcagtctgtgcactgttgacccactaggccagcttagtttactca Alignment from GeneWise GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGA-- ttgacctgatctagctagtgctagacagtgtgttggctgctgtattacagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACTCCATCTACTGCCGTGCAAGGTAATTCAgtctgtgcactgttgacccactaggccagcttagtttactca #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCC-CACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg cagtttggaaaggattccaacatcaaatcacaagaaaaattgtgtttcagaaTTGGTGCTGGAGAAGTCCCAACATCGCTCAGTTCTCAAACCACTTCGACCCATCCTAGCTGCTCGTCTACGCCATCGCCTTTCTACTGATGGTTCTCTTGGGTGTCTAGCAGAGGGCTTTCTCCTCACCCAAACCCAGGGACCTGGGGCCTTTGGGCCCCCACTTGA-TCTTTCTTCCCCAGTGGAGACAGAACAGGTTTGTCAGAAACTTCTACAGCTCCTACGTGCATACTCGCCAAGCGCACAAGTTGAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTAAAGAGCCAAGCAggtatcatatcaccaacttccccagggctagtgcacatacacacctttaga Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg cagtttggaaaggattccaacatcaaatcacaagaaaaattgtgtttcagaaTTGGTGCTGGAGAAGTCCCAACATCGCTCAGTTCTCAAACCACTTCGACCCATCCTAGCTGCTCGTCTACGCCATCGCCTTTCTACTGATGGTTCTCTTGGGTGTCTAGCAGAGGGCTTTCTCCTCACCCAAACCCAGGGACCTGGGGCCTTTGGGCCCCCACTTGATCTTTCTTCCCCAGTGGAGACAGAACAGGTTTGTCAGAAACTTCTACAGCTCCTACGTGCATACTCGCCAAGCGCACAAGTTGAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTAAAGAGCCAAGCAggtatcatatcaccaacttccccagggctagtgcacatacacacctttaga Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG cagtttggaaaggattccaacatcaaatcacaagaaaaattgtgtttcagAATTGGTGCTGGAGAAGTCCCAACATCGCTCAGTTCTCAAACCACTTCGACCCATCCTAGCTGCTCGTCTACGCCATCGCCTTTCTACTGATGGTTCTCTTGGGTGTCTAGCAGAGGGCTTTCTCCTCACCCAAACCCAGGGACCTGGGGCCTTTGGGCCCCCACTTGATCTTTCTTCCCCAGTGGAGACAGAACAGGTTTGTCAGAAACTTCTACAGCTCCTACGTGCATACTCGCCAAGCGCACAAGTTGAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTAAAGAGCCAAGCAGgtatcatatcaccaacttccccagggctagtgcacatacacacctttaga Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG cagtttggaaaggattccaacatcaaatcacaagaaaaattgtgtttcagAATTGGTGCTGGAGAAGTCCCAACATCGCTCAGTTCTCAAACCACTTCGACCCATCCTAGCTGCTCGTCTACGCCATCGCCTTTCTACTGATGGTTCTCTTGGGTGTCTAGCAGAGGGCTTTCTCCTCACCCAAACCCAGGGACCTGGGGCCTTTGGGCCCCCACTTGATCTTTCTTCCCCAGTGGAGACAGAACAGGTTTGTCAGAAACTTCTACAGCTCCTACGTGCATACTCGCCAAGCGCACAAGTTGAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTAAAGAGCCAAGCAGgtatcatatcaccaacttccccagggctagtgcacatacacacctttaga Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG cagtttggaaaggattccaacatcaaatcacaagaaaaattgtgtttcagAATTGGTGCTGGAGAAGTCCCAACATCGCTCAGTTCTCAAACCACTTCGACCCATCCTAGCTGCTCGTCTACGCCATCGCCTTTCTACTGATGGTTCTCTTGGGTGTCTAGCAGAGGGCTTTCTCCTCACCCAAACCCAGGGACCTGGGGCCTTTGGGCCCCCACTTGATCTTTCTTCCCCAGTGGAGACAGAACAGGTTTGTCAGAAACTTCTACAGCTCCTACGTGCATACTCGCCAAGCGCACAAGTTGAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTAAAGAGCCAAGCAGgtatcatatcaccaacttccccagggctagtgcacatacacacctttaga Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG cagtttggaaaggattccaacatcaaatcacaagaaaaattgtgtttcagAATTGGTGCTGGAGAAGTCCCAACATCGCTCAGTTCTCAAACCACTTCGACCCATCCTAGCTGCTCGTCTACGCCATCGCCTTTCTACTGATGGTTCTCTTGGGTGTCTAGCAGAGGGCTTTCTCCTCACCCAAACCCAGGGACCTGGGGCCTTTGGGCCCCCACTTGATCTTTCTTCCCCAGTGGAGACAGAACAGGTTTGTCAGAAACTTCTACAGCTCCTACGTGCATACTCGCCAAGCGCACAAGTTGAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTAAAGAGCCAAGCAGgtatcatatcaccaacttccccagggctagtgcacatacacacctttaga Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG cagtttggaaaggattccaacatcaaatcacaagaaaaattgtgtttcagAATTGGTGCTGGAGAAGTCCCAACATCGCTCAGTTCTCAAACCACTTCGACCCATCCTAGCTGCTCGTCTACGCCATCGCCTTTCTACTGATGGTTCTCTTGGGTGTCTAGCAGAGGGCTTTCTCCTCACCCAAACCCAGGGACCTGGGGCCTTTGGGCCCCCACTTGATCTTTCTTCCCCAGTGGAGACAGAACAGGTTTGTCAGAAACTTCTACAGCTCCTACGTGCATACTCGCCAAGCGCACAAGTTGAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTAAAGAGCCAAGCAGgtatcatatcaccaacttccccagggctagtgcacatacacacctttaga Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG cagtttggaaaggattccaacatcaaatcacaagaaaaattgtgtttcagAATTGGTGCTGGAGAAGTCCCAACATCGCTCAGTTCTCAAACCACTTCGACCCATCCTAGCTGCTCGTCTACGCCATCGCCTTTCTACTGATGGTTCTCTTGGGTGTCTAGCAGAGGGCTTTCTCCTCACCCAAACCCAGGGACCTGGGGCCTTTGGGCCCCCACTTGATCTTTCTTCCCCAGTGGAGACAGAACAGGTTTGTCAGAAACTTCTACAGCTCCTACGTGCATACTCGCCAAGCGCACAAGTTGAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTAAAGAGCCAAGCAGgtatcatatcaccaacttccccagggctagtgcacatacacacctttaga #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTT-AACAGCAGTCCCCGCACCCCCATCag agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTCAACAGTA-TCCCCGTACACCCATCaggtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTCAACAGTATCCCCGTACACCCATCaggtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTCAACAGTATCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTT-AACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTCAACAGTA-TCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTT-AACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTCAACAGTA-TCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTCAACAGTATCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Exonerate_coding2genome agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagagttttatgtatgtggcaccttttgtcctagacagcatcaaagaaggtttttcattccagcccaagctgcgttccccacgatgccttcaacagtatccccgtacacccatcaggtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTCAACAGTATCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGAT-GACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctattggggtcagcagcatgctaggtattaagagactttcctttgtgcagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGCTTCATGCGGCAAACTCCT---AGTACCCCAGATCGACACAC-ACTAACTGAGTGTGCCAACCAAGCTGTCTTAgtgagttgctgggttatgagaaaagacagggtcatgccatctggctttac Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctattggggtcagcagcatgctaggtattaagagactttcctttgtgcagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGCTTCATGCGGCAAACTCCT---AGTACCCCAGATCGACACACACTAACTGAGTGTGCCAACCAAGCTGTCTTAgtgagttgctgggttatgagaaaagacagggtcatgccatctggctttac Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctattggggtcagcagcatgctaggtattaagagactttcctttgtgcagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGCTTCATGCGGCAAACTCCT---AGTACCCCAGATCGACACACACTAACTGAGTGTGCCAACCAAGCTGTCTTAgtgagttgctgggttatgagaaaagacagggtcatgccatctggctttac Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGAT-GACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctattggggtcagcagcatgctaggtattaagagactttcctttgtgcagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGCTTCATGCGGCAAACTCC--TAG-TACCCCAGATCGACACA-CACTAACTGAGTGTGCCAACCAAGCTGTCTTAgtgagttgctgggttatgagaaaagacagggtcatgccatctggctttac Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGT---CCAGAT-GACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctattggggtcagcagcatgctaggtattaagagactttcctttgtgcagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGCTTCATGCGGCAAACTCC------TAGTACCCCAGATCGACACA-CACTAACTGAGTGTGCCAACCAAGCTGTCTTAgtgagttgctgggttatgagaaaagacagggtcatgccatctggctttac Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctattggggtcagcagcatgctaggtattaagagactttcctttgtgcagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGCTTCATGCGGCAAACTCCT---AGTACCCCAGATCGACACACACTAACTGAGTGTGCCAACCAAGCTGTCTTAgtgagttgctgggttatgagaaaagacagggtcatgccatctggctttac Alignment from Exonerate_coding2genome ctattggggtcagcagcatgctaggtattaagagactttcctttgtgcagcaatctgaggaggatgtgagccaatttgatgcacgcttcatgcggcaaactcctagtaccccagatcgacacacactaactgagtgtgccaaccaagctgtcttagtgagttgctgggttatgagaaaagacagggtcatgccatctggctttac Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctattggggtcagcagcatgctaggtattaagagactttcctttgtgcagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGCTTCATGCGGCAAACTCCT---AGTACCCCAGATCGACACACACTAACTGAGTGTGCCAACCAAGCTGTCTTAgtgagttgctgggttatgagaaaagacagggtcatgccatctggctttac #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGC-CGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCCTGTGTAGACC-TCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from CESAR AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCCTGTGTAGACCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCCTGTGTAGACCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCCTGTGTAGACCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Pairagon AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCC-GCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCCTGTGTAGA-CCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCCTGTGTAGACCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Exonerate_coding2genome agatgccaaagtgacatcatggcattgttattttccctccctcacttcagcggcaccctttctacagacatatcaattgggatgatccattagcctgcctgtgtagacctctcttcaggccaagtctggtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from GeneWise AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCCTGTGTAGACCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAACCCCACTCAG-CGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccacctacattcatttttgcccttttttttttttttttttttagTTACTGAAGCGTAATCCAACACAACCAAATTGGGG-TGATTTAGGAGATGCTGCTGATGTCCAGgtttggagatctgtcgctttacctgctggagaaaacagacatcaagaaaa Alignment from CESAR TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccacctacattcatttttgcccttttttttttttttttttttagTTACTGAAGCGTAATCCAACACAACCAAATTGGGGTGATTTAGGAGATGCTGCTGATGTCCAGgtttggagatctgtcgctttacctgctggagaaaacagacatcaagaaaa Alignment from Spaln_aa2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccacctacattcatttttgcccttttttttttttttttttttagTTACTGAAGCGTAATCCAACACAACCAAATTGGGGTGATTTAGGAGATGCTGCTGATGTCCAGgtttggagatctgtcgctttacctgctggagaaaacagacatcaagaaaa Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccacctacattcatttttgcccttttttttttttttttttttagTTACTGAAGCGTAATCCAACACAACCAAATTGGGGTGATTTAGGAGATGCTGCTGATGTCCAGgtttggagatctgtcgctttacctgctggagaaaacagacatcaagaaaa Alignment from Pairagon TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccacctacattcatttttgcccttttttttttttttttttttagTTACTGAAGCGTAATCCAACACAACCAAATTGGGGTGATTTAGGAGATGCTGCTGATGTCCAGgtttggagatctgtcgctttacctgctggagaaaacagacatcaagaaaa Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccacctacattcatttttgcccttttttttttttttttttttagTTACTGAAGCGTAATCCAACACAACCAAATTGGGGTGATTTAGGAGATGCTGCTGATGTCCAGgtttggagatctgtcgctttacctgctggagaaaacagacatcaagaaaa Alignment from Exonerate_coding2genome tcttgaccacctacattcatttttgcccttttttttttttttttttttagttactgaagcgtaatccaacacaaccaaattggggtgatttaggagatgctgctgatgtccaggtttggagatctgtcgctttacctgctggagaaaacagacatcaagaaaa Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccacctacattcatttttgcccttttttttttttttttttttagTTACTGAAGCGTAATCCAACACAACCAAATTGGGGTGATTTAGGAGATGCTGCTGATGTCCAGgtttggagatctgtcgctttacctgctggagaaaacagacatcaagaaaa #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg gtctgcaggatacctactgtagcgagtaccttacccagacccccactcagtTTCTACCTTGCGGAGATCACACTTGGCAT-AGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGGAAA---ATGCTCACCAGTCAGggtaagattcacatcactgtatggtgataaaacttagttttcccagtgtca Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg gtctgcaggatacctactgtagcgagtaccttacccagacccccactcagtTTCTACCTTGCGGAGATCACACTTGGCATAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGGAAA---ATGCTCACCAGTCAGggtaagattcacatcactgtatggtgataaaacttagttttcccagtgtca Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgagtaccttacccagacccccactcagTTTCTACCTTGCGGAGATCACACTTGGCATAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGGAAA---ATGCTCACCAGTCAGGgtaagattcacatcactgtatggtgataaaacttagttttcccagtgtca Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgagtaccttacccagacccccactcagTTTCTACCTTGCGGAGATCACACTTGGCATAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGGAA---AATGCTCACCAGTCAGGgtaagattcacatcactgtatggtgataaaacttagttttcccagtgtca Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgagtaccttacccagacccccactcagTTTCTACCTTGCGGAGATCACACTTGGCATAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGGAA---AATGCTCACCAGTCAGGgtaagattcacatcactgtatggtgataaaacttagttttcccagtgtca Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgagtaccttacccagacccccactcagTTTCTACCTTGCGGAGATCACACTTGGCATAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGGAAA---ATGCTCACCAGTCAGGgtaagattcacatcactgtatggtgataaaacttagttttcccagtgtca Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGGGCCACATCAAACTGACA gtctgcaggatacctactgtagcgagtaccttacccagacccccactcagTTTCTACCTTGCGGAGATCACACTTGGCATAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGGAAA---ATGCTCACCAGTCAGGGTAAGATTCACATCACTgtatggtgataaaacttagttttcccagtgtca Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgagtaccttacccagacccccactcagTTTCTACCTTGCGGAGATCACACTTGGCATAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGGAAA---ATGCTCACCAGTCAGGgtaagattcacatcactgtatggtgataaaacttagttttcccagtgtca #### Rps6kb2_ID376_6 --> 2 - 2 Original Alignment gtGGTGAGCTCTTCACACATCTTGAGCGAGAA-GGCATCTTCCTGGAAGACACAGCCtg cagtggaagtttgtgatgaagtcatgtgcctttcatggctttccttgtagttGGTGAGCTTTTTACACATCTAGAACGGGAACGGTGTGTTTC-GGAAGACACAGCTtggtgggtaaagtctgcaggatacctactgtagcgagtagtcgtctttgtgt Alignment from CESAR gtGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCtg cagtggaagtttgtgatgaagtcatgtgcctttcatggctttccttgtagttGGTGAGCTTTTTACACATCTAGAACGGGAACGGTGTGTTTCGGAAGACACAGCTtggtgggtaaagtctgcaggatacctactgtagcgagtaccttacccagacc Alignment from Spaln_aa2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG cagtggaagtttgtgatgaagtcatgtgcctttcatggctttccttgtagTTGGTGAGCTTTTTACACATCTAGAACGGGAACGGTGTGTTTCGGAAGACACAGCTTGgtgggtaaagtctgcaggatacctactgtagcgagtagtcgtctttgtgt Alignment from Spaln_nt2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAA-GGCATCTTCCTGGAAGACACAGCCTG cagtggaagtttgtgatgaagtcatgtgcctttcatggctttccttgtagTTGGTGAGCTTTTTACACATCTAGAACGGGAACGGTGTGTTTC-GGAAGACACAGCTTGgtgggtaaagtctgcaggatacctactgtagcgagtagtcgtctttgtgt Alignment from Pairagon GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGG--------CATCTTCCTGGAAGACACAGCCTG cagtggaagtttgtgatgaagtcatgtgcctttcatggctttccttgtagTTGGTGAGCTTTTTACACATCTAGAACGGGAACGGTGTGTTTC--------GGAAGACACAGCTTGgtgggtaaagtctgcaggatacctactgtagcgagtagtcgtctttgtgt Alignment from Exonerate_protein2genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG cagtggaagtttgtgatgaagtcatgtgcctttcatggctttccttgtagTTGGTGAGCTTTTTACACATCTAGAACGGGAACGGTGTGTTTCGGAAGACACAGCTTGgtgggtaaagtctgcaggatacctactgtagcgagtagtcgtctttgtgt Alignment from Exonerate_coding2genome cagtggaagtttgtgatgaagtcatgtgcctttcatggctttccttgtagttggtgagctttttacacatctagaacgggaacggtgtgtttcggaagacacagcttggtgggtaaagtctgcaggatacctactgtagcgagtagtcgtctttgtgt Alignment from GeneWise GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG cagtggaagtttgtgatgaagtcatgtgcctttcatggctttccttgtagTTGGTGAGCTTTTTACACATCTAGAACGGGAACGGTGTGTTTCGGAAGACACAGCTTGgtgggtaaagtctgcaggatacctactgtagcgagtagtcgtctttgtgt #### Rps6kb2_ID380_2 --> 0 - 2 Original Alignment GACGTGTGTCCCCTTGGCGAA-TTAAGGGCTGCTGGCCTGga tcattggccgggggtaagttgatagtgtatgcccttctctgtctacacagTATGTGTGTCCACTTGGCAAGCCTCA-GGCAGCTGGTTTAgagtaaagagtgtaagtagaggcttgtggttgaaaagagggattaagggcca Alignment from CESAR GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGga tcattggccgggggtaagttgatagtgtatgcccttctctgtctacacagTATGTGTGTCCACTTGGCAAGCCTCAGGCAGCTGGTTTAgagtaaagagtgtaagtagaggcttgtggttgaaaagagggattaagggcca Alignment from Spaln_aa2Genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA tcattggccgggggtaagttgatagtgtatgcccttctctgtctacacagTATGTGTGTCCACTTGGCAAGCCTCAGGCAGCTGGTTTAGAgtaaagagtgtaagtagaggcttgtggttgaaaagagggattaagggcca Alignment from Spaln_nt2Genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA tcattggccgggggtaagttgatagtgtatgcccttctctgtctacacagTATGTGTGTCCACTTGGCAAGCCTCAGGCAGCTGGTTTAGAgtaaagagtgtaagtagaggcttgtggttgaaaagagggattaagggcca Alignment from Pairagon GACGTGTGTCCCCTTGGCGAATTAAG-----GGCTGCTGGCCTGGA tcattggccgggggtaagttgatagtgtatgcccttctctgtctacacagTATGTGTGTCCACTTGGC-----AAGCCTCAGGCAGCTGGTTTAGAgtaaagagtgtaagtagaggcttgtggttgaaaagagggattaagggcca Alignment from Exonerate_protein2genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA tcattggccgggggtaagttgatagtgtatgcccttctctgtctacacagTATGTGTGTCCACTTGGCAAGCCTCAGGCAGCTGGTTTAGAgtaaagagtgtaagtagaggcttgtggttgaaaagagggattaagggcca Alignment from Exonerate_coding2genome tcattggccgggggtaagttgatagtgtatgcccttctctgtctacacagtatgtgtgtccacttggcaagcctcaggcagctggtttagagtaaagagtgtaagtagaggcttgtggttgaaaagagggattaagggcca Alignment from GeneWise tcattggccgggggtaagttgatagtgtatgcccttctctgtctacacagtatgtgtgtccacttggcaagcctcaggcagctggtttagagtaaagagtgtaagtagaggcttgtggttgaaaagagggattaagggcca #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGT-GGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg gtaggttagggcagggttgcctcctatttttttaatgtctgaaattacagcATCGAGGAAGTTTCAGCTGACTCAAAAGATGAGTTTGAGGAAGAACAGAGAGGCCGAGGCAAAGAGCAG------TTGGTC------AGGAGCCGATCATGG---AAGGATGGACGGTGGT---GCACCTCTCAATTTC------CCGAAAGTAGCACATCGTATCCAGggtaggtatgggtgaggatgcccttcatggctcggggggtcaagggttagg Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg gtaggttagggcagggttgcctcctatttttttaatgtctgaaattacagcATCGAGGAAGTTTCAGCTGACTCAAAAGATGAGTTTGAGGAAGAACAGAGAGGCCGAGGCAAAGAGCAG------TTGGTC------AGGAGCCGATCATGG---AAGGATGGA--CGGTGGTGCACCTCTCAATTTC------CCGAAAGTAGCACATCGTATCCAGggtaggtatgggtgaggatgcccttcatggctcggggggtcaagggttagg Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaggttagggcagggttgcctcctatttttttaatgtctgaaattacagCATCGAGGAAGTTTCAGCTGACTCAAAAGATGAGTTTGAGGAAGAACAGAGAGGCCGAGGCAAAGAGCAG------TTGGTC------AGGAGCCGATCATGG---AAGGATGGAC--GGTGGTGCACCTCTCAATTTC------CCGAAAGTAGCACATCGTATCCAGGgtaggtatgggtgaggatgcccttcatggctcggggggtcaagggttagg Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaggttagggcagggttgcctcctatttttttaatgtctgaaattacagCATCGAGGAAGTTTCAGCTGACTCAAAAGATGAGTTTGAGGAAGAACAGAGAGGCCGAGGCAAAGAGC------AGTTGG------TCAGGAGCCGATCATG---GAAGGATG--GACGGTGGTGCACCTCTCAATTTC------CCGAAAGTAGCACATCGTATCCAGGgtaggtatgggtgaggatgcccttcatggctcggggggtcaagggttagg Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaggttagggcagggttgcctcctatttttttaatgtctgaaattacagCATCGAGGAAGTTTCAGCTGACTCAAAAGATGAGTTTGAGGAAGAACAGAGAGGCCGAGGCAAAGAGCAG-------------------------------------------------------------------------------------------------TTGgtcaggagccgatcatggaaggatggacggtggtgcacctctcaatttcccgaaagtagcacatcgtatccagggtaggtatgggtgaggatgcccttcatggctcggggggtcaagggttagg Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaggttagggcagggttgcctcctatttttttAATGTCTGAAATTACAGCATCGAGGAAGTTTCAGCTGACTCAAAAGATGAGTTTGAGGAAGAACAGAGAGGCCGAGGCAAAGAGCAGTTGGTCAGGAGCCGATCATGGAAGGATGGACGGTGGTGCACCTCTCAATTTC------CCGAAAGTAGCACATCGTATCCAGGgtaggtatgggtgaggatgcccttcatggctcggggggtcaagggttagg Alignment from Exonerate_coding2genome gtaggttagggcagggttgcctcctatttttttaatgtctgaaattacagcatcgaggaagtttcagctgactcaaaagatgagtttgaggaagaacagagaggccgaggcaaagagcagttggtcaggagccgatcatggaaggatggacggtggtgcacctctcaatttcccgaaagtagcacatcgtatccagggtaggtatgggtgaggatgcccttcatggctcggggggtcaagggttagg Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaggttagggcagggttgcctcctatttttttaatgtctgaaattacagCATCGAGGAAGTTTCAGCTGACTCAAAAGATGAGTTTGAGGAAGAACAGAGAGGCCGAGGCAAAGAGCAGTTG------------GTCAGGAGCCGATCATGG---AAGGATGGAC--GGTGGTGCACCTCTCAATTTC------CCGAAAGTAGCACATCGTATCCAGGgtaggtatgggtgaggatgcccttcatggctcggggggtcaagggttagg #### Rrp12_ID8297_26 --> 0 - 2 Original Alignment ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAG-CTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg cgatgctggataacctcagtggataatgaagtattgtgtctttgtcctagATGGAAGCAATAGGGAAACTGTCAGATGATATGCAACGGCACTTCCGGATGAAACCTCCAGAAGC-GTTCATCAAGTTCACACGCAAGTTTgggtagggcaatagtcaagggagaatgtaacatgggaacatggtgtatttgc Alignment from CESAR ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg cgatgctggataacctcagtggataatgaagtattgtgtctttgtcctagATGGAAGCAATAGGGAAACTGTCAGATGATATGCAACGGCACTTCCGGATGAAACCTCCAGAAGCGTTCATCAAGTTCACACGCAAGTTTgggtagggcaatagtcaagggagaatgtaacatgggaacatggtgtatttgc Alignment from Spaln_aa2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG cgatgctggataacctcagtggataatgaagtattgtgtctttgtcctagATGGAAGCAATAGGGAAACTGTCAGATGATATGCAACGGCACTTCCGGATGAAACCTCCAGAAGCGTTCATCAAGTTCACACGCAAGTTTGGgtagggcaatagtcaagggagaatgtaacatgggaacatggtgtatttgc Alignment from Spaln_nt2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG cgatgctggataacctcagtggataatgaagtattgtgtctttgtcctagATGGAAGCAATAGGGAAACTGTCAGATGATATGCAACGGCACTTCCGGATGAAACCTCCAGAAGCGTTCATCAAGTTCACACGCAAGTTTGGgtagggcaatagtcaagggagaatgtaacatgggaacatggtgtatttgc Alignment from Pairagon ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCT--------GTTCATCAAGTTCACCCGCAAGTTTGG cgatgctggataacctcagtggataatgaagtattgtgtctttgtcctagATGGAAGCAATAGGGAAACTGTCAGATGATATGCAACGGCACTTCCGGATGA--------AACCTCCAGAAGCGTTCATCAAGTTCACACGCAAGTTTGGgtagggcaatagtcaagggagaatgtaacatgggaacatggtgtatttgc Alignment from Exonerate_protein2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG cgatgctggataacctcagtggataatgaagtattgtgtctttgtcctagATGGAAGCAATAGGGAAACTGTCAGATGATATGCAACGGCACTTCCGGATGAAACCTCCAGAAGCGTTCATCAAGTTCACACGCAAGTTTGGgtagggcaatagtcaagggagaatgtaacatgggaacatggtgtatttgc Alignment from Exonerate_coding2genome cgatgctggataacctcagtggataatgaagtattgtgtctttgtcctagatggaagcaatagggaaactgtcagatgatatgcaacggcacttccggatgaaacctccagaagcgttcatcaagttcacacgcaagtttgggtagggcaatagtcaagggagaatgtaacatgggaacatggtgtatttgc Alignment from GeneWise ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG cgatgctggataacctcagtggataatgaagtattgtgtctttgtcctagATGGAAGCAATAGGGAAACTGTCAGATGATATGCAACGGCACTTCCGGATGAAACCTCCAGAAGCGTTCATCAAGTTCACACGCAAGTTTGGgtagggcaatagtcaagggagaatgtaacatgggaacatggtgtatttgc #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATT-GTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggggcatataggattgactattcaatgctcttcacttccttttaaaatagCCC---CTGAAATGTCTCATACATATTCGTGAAAA-ACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaacgttgcaggtcagactctggactcctgaagccagacctaaggagga Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggggcatataggattgactattcaatgctcttcacttccttttaaaatagCCC---CTGAAATGTCTCATACATATTCGTGAAAAACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaacgttgcaggtcagactctggactcctgaagccagacctaaggagga Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggggcatataggattgactattcaatgctcttcacttccttttaaaatagCCCCTGAAATGT---CTCATACATATTCGTGAAAAACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaacgttgcaggtcagactctggactcctgaagccagacctaaggagga Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATT-GTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggggcatataggattgactattcaatgctcttcacttccttttaaaatagCCCC---TGAAATGTCTCATACATATTCGTGAA-AAACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaacgttgcaggtcagactctggactcctgaagccagacctaaggagga Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATT-GTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggggcatataggattgactattcaatgctcttcacttccttttaaaatagCCCC---TGAAATGTCTCATACATATTCGTGAAAA-ACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaacgttgcaggtcagactctggactcctgaagccagacctaaggagga Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggggcatataggattgactattcaatgctcttcacttccttttaaaaTAGCCCCTGAAATGTCTCATACATATTCGTGAAAAACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaacgttgcaggtcagactctggactcctgaagccagacctaaggagga Alignment from Exonerate_coding2genome ggggcatataggattgactattcaatgctcttcacttccttttaaaatagcccctgaaatgtctcatacatattcgtgaaaaactgttagctgaacatgaagaattcacagctgcattgatccctgaggtaacgttgcaggtcagactctggactcctgaagccagacctaaggagga Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggggcatataggattgactattcaatgctcttcacttccttttaaaatagCCC---CTGAAATGTCTCATACATATTCGTGAAAAACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaacgttgcaggtcagactctggactcctgaagccagacctaaggagga #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAG-GAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ctgatatgccacaattggcagcattgactaactctttcttcatcttgtagCTTCATAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGCGAGAAGC-GAAGGCCCAAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATgcgttagtaggtaggagttttcagcttggactggtatgctgaacacaattat Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ctgatatgccacaattggcagcattgactaactctttcttcatcttgtagCTTCATAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGCGAGAAGCGAAGGCCCAAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATgcgttagtaggtaggagttttcagcttggactggtatgctgaacacaattat Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ctgatatgccacaattggcagcattgactaactctttcttcatcttgtagCTTCATAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGCGAGAAGCGAAGGCCCAAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCgttagtaggtaggagttttcagcttggactggtatgctgaacacaattat Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ctgatatgccacaattggcagcattgactaactctttcttcatcttgtagCTTCATAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGCGAGAAGCGAAGGCCCAAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCgttagtaggtaggagttttcagcttggactggtatgctgaacacaattat Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAG-GAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ctgatatgccacaattggcagcattgactaactctttcttcatcttgtagCTTCATAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGCGAGAAGC-GAAGGCCCAAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCgttagtaggtaggagttttcagcttggactggtatgctgaacacaattat Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ctgatatgccacaattggcagcattgactaactctttcttcatcttgtagCTTCATAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGCGAGAAGCGAAGGCCCAAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCGttagtaggtaggagttttcagcttggactggtatgctgaacacaattat Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ctgatatgccacaattggcagcattgactaactctttcttcatcttgtagCTTCATAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGCGAGAAGCGAAGGCCCAAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCGttagtaggtaggagttttcagcttggactggtatgctgaacacaattat Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCGAACACCATCACCAAA ctgatatgccacaattggcagcattgactaactctttcttcatcttgtagCTTCATAAGAAGATGAGCTCTAGTGATACACCCCTGGGAACAGTGGCATTGCTCCAGCGAGAAGCGAAGGCCCAAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCGTTAGTAGGTAGGAGTtttcagcttggactggtatgctgaacacaattat #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTG-TCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGCTCCCACC-GTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGCTCCCACCGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGCTCCCACCGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGCTCCCACCGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Pairagon GCATTCCGGCAGCTG-TCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGCTCCCACCG-TTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGCTCCCACCGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGCTCCCACCGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGCTCCCACCGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAG-CTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ggtctaacacatgcttgagtatcacgaaaccttctcttttgtctatgcagaaGATGGTGGGGCTCTTCCACCAGGAGCACCAGATGGACTGGACGAAGATGAGGCAGAACTGGAACTTACAAA-GCAGCTAGAAAAGGGCCGTCGGCTGCGGCAGCTCCAGCAGTTACAGCAGCTAAGGGACAGTGGGGAGAAAgtgagtcactaaagcagttacaatgagaggactgtgcactgttgtaacaa Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ggtctaacacatgcttgagtatcacgaaaccttctcttttgtctatgcagaaGATGGTGGGGCTCTTCCACCAGGAGCACCAGATGGACTGGACGAAGATGAGGCAGAACTGGAACTTACAAAGCAGCTAGAAAAGGGCCGTCGGCTGCGGCAGCTCCAGCAGTTACAGCAGCTAAGGGACAGTGGGGAGAAAgtgagtcactaaagcagttacaatgagaggactgtgcactgttgtaacaa Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ggtctaacacatgcttgagtatcacgaaaccttctcttttgtctatgcagAAGATGGTGGGGCTCTTCCACCAGGAGCACCAGATGGACTGGACGAAGATGAGGCAGAACTGGAACTTACAAAGCAGCTAGAAAAGGGCCGTCGGCTGCGGCAGCTCCAGCAGTTACAGCAGCTAAGGGACAGTGGGGAGAAAgtgagtcactaaagcagttacaatgagaggactgtgcactgttgtaacaa Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ggtctaacacatgcttgagtatcacgaaaccttctcttttgtctatgcagAAGATGGTGGGGCTCTTCCACCAGGAGCACCAGATGGACTGGACGAAGATGAGGCAGAACTGGAACTTACAAAGCAGCTAGAAAAGGGCCGTCGGCTGCGGCAGCTCCAGCAGTTACAGCAGCTAAGGGACAGTGGGGAGAAAgtgagtcactaaagcagttacaatgagaggactgtgcactgttgtaacaa Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ggtctaacacatgcttgagtatcacgaaaccttctcttttgtctatgcagAAGATGGTGGGGCTCTTCCACCAGGAGCACCAGATGGACTGGACGAAGATGAGGCAGAACTGGAACTTACAAAGCAGCTAGAAAAGGGCCGTCGGCTGCGGCAGCTCCAGCAGTTACAGCAGCTAAGGGACAGTGGGGAGAAAgtgagtcactaaagcagttacaatgagaggactgtgcactgttgtaacaa Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ggtctaacacatgcttgagtatcacgaaaccttctcttttgtctatgcagAAGATGGTGGGGCTCTTCCACCAGGAGCACCAGATGGACTGGACGAAGATGAGGCAGAACTGGAACTTACAAAGCAGCTAGAAAAGGGCCGTCGGCTGCGGCAGCTCCAGCAGTTACAGCAGCTAAGGGACAGTGGGGAGAAAgtgagtcactaaagcagttacaatgagaggactgtgcactgttgtaacaa Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ggtctaacacatgcttgagtatcacgaaaccttctcttttgtctatgcagAAGATGGTGGGGCTCTTCCACCAGGAGCACCAGATGGACTGGACGAAGATGAGGCAGAACTGGAACTTACAAAGCAGCTAGAAAAGGGCCGTCGGCTGCGGCAGCTCCAGCAGTTACAGCAGCTAAGGGACAGTGGGGAGAAAgtgagtcactaaagcagttacaatgagaggactgtgcactgttgtaacaa Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ggtctaacacatgcttgagtatcacgaaaccttctcttttgtctatgcagAAGATGGTGGGGCTCTTCCACCAGGAGCACCAGATGGACTGGACGAAGATGAGGCAGAACTGGAACTTACAAAGCAGCTAGAAAAGGGCCGTCGGCTGCGGCAGCTCCAGCAGTTACAGCAGCTAAGGGACAGTGGGGAGAAAgtgagtcactaaagcagttacaatgagaggactgtgcactgttgtaacaa #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAG-GAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA agtgaagtgctgctttcactgccagctagttttgttttgttttgttttaggtGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAACGAACACG-TGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtatgcgtaatcagtctgtgagaagtgttttctctctgtcggacagCGGA Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCG---GACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA agtgaagtgctgctttcactgccagctagttttgttttgttttgttttaggtGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAA---CGAACACGTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtatgcgtaatcagtctgtgagaacactctccccctttcttcctagCGGA Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA agtgaagtgctgctttcactgccagctagttttgttttgttttgttttagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAACGAACACGTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtatgcgtaatcagtctgtgagaagtgttttctctctgtcggacagCGGA Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAG-GAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA agtgaagtgctgctttcactgccagctagttttgttttgttttgttttagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAACGAACACGTGATCGA-AATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtatgcgtaatcagtctgtgagaagtgttttctctctgtcggacagCGGA Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAAC-------------GTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA agtgaagtgctgctttcactgccagctagttttgttttgttttgttttagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAA-------------ACGAACACGTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtatgcgtaatcagtctgtgagaagtgttttctctctgtcggacagCGGA Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA agtgaagtgctgctttcactgccagctagttttgttttgttttgttttagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAACGAACACGTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtatgcgtaatcagtctgtgagaagtgttttctctctgtcggacagCGGA Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA agtgaagtgctgctttcactgccagctagttttgttttgttttgttttagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAACGAACACGTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtatgcgtaatcagtctgtgagaagtgttttctctctgtcggacagCGGA Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA agtgaagtgctgctttcactgccagctagttttgttttgttttgttttagGTGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAATATGGTGGACAAACGAACACGTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCAGACTACCTAAGCTATGTTGAGGATGAGGGTGTGGATGACCTAGCACAGgtatgcgtaatcagtctgtgagaagtgttttctctctgtcggacagCGGA #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAA-CATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg agagaactagcttttgttcttatttcgacatgtccttctccttctactagGACCTGTACAGTGCCCGCGACCTGCAGGGCCTCACTGTGGAACCGTGCTA-TGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAggtgggcggtatctgggagtggcttgattgggtagcctgtggctaaagatt Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg agagaactagcttttgttcttatttcgacatgtccttctccttctactagGACCTGTACAGTGCCCGCGACCTGCAGGGCCTCACTGTGGAACCGTGCTATGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAggtgggcggtatctgggagtggcttgattgggtagcctgtggctaaagatt Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG agagaactagcttttgttcttatttcgacatgtccttctccttctactagGACCTGTACAGTGCCCGCGACCTGCAGGGCCTCACTGTGGAACCGTGCTATGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtgggcggtatctgggagtggcttgattgggtagcctgtggctaaagatt Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG agagaactagcttttgttcttatttcgacatgtccttctccttctactagGACCTGTACAGTGCCCGCGACCTGCAGGGCCTCACTGTGGAACCGTGCTATGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtgggcggtatctgggagtggcttgattgggtagcctgtggctaaagatt Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAA-CATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG agagaactagcttttgttcttatttcgacatgtccttctccttctactagGACCTGTACAGTGCCCGCGACCTGCAGGGCCTCACTGTGGAACCGTGCTAT-GATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtgggcggtatctgggagtggcttgattgggtagcctgtggctaaagatt Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG agagaactagcttttgttcttatttcgacatgtccttctccttctactagGACCTGTACAGTGCCCGCGACCTGCAGGGCCTCACTGTGGAACCGTGCTATGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtgggcggtatctgggagtggcttgattgggtagcctgtggctaaagatt Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG agagaactagcttttgttcttatttcgacatgtccttctccttctactagGACCTGTACAGTGCCCGCGACCTGCAGGGCCTCACTGTGGAACCGTGCTATGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtgggcggtatctgggagtggcttgattgggtagcctgtggctaaagatt Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG agagaactagcttttgttcttatttcgacatgtccttctccttctactagGACCTGTACAGTGCCCGCGACCTGCAGGGCCTCACTGTGGAACCGTGCTATGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtgggcggtatctgggagtggcttgattgggtagcctgtggctaaagatt #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAG-CTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacatgcccacagttctggaagacgccactttcatttgttctctagtAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CCTACAGA-AGAGAAGGATTTGGCAAAAAAGAGGgtaaagacaaatgggtatttaaaatctatctattaagtcccaaacctttt Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacatgcccacagttctggaagacgccactttcatttgttctctagtAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CCTACAGAAGAGAAGGATTTGGCAAAAAAGAGGgtaaagacaaatgggtatttaaaatctatctattaagtcccaaacctttt Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacatgcccacagttctggaagacgccactttcatttgttctctagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CCTACAGAAGAGAAGGATTTGGCAAAAAAGAGGgtaaagacaaatgggtatttaaaatctatctattaagtcccaaacctttt Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacatgcccacagttctggaagacgccactttcatttgttctctagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGCC-----CTACAG-AAGAGAAGGATTTGGCAAAAAAGAGGgtaaagacaaatgggtatttaaaatctatctattaagtcccaaacctttt Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacatgcccacagttctggaagacgccactttcatttgttctctagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGCC-----CTACAG-AAGAGAAGGATTTGGCAAAAAAGAGGgtaaagacaaatgggtatttaaaatctatctattaagtcccaaacctttt Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacatgcccacagttctggaagacgccactttcatttgttctctagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGCCCT------ACAGAAGAGAAGGATTTGGCAAAAAAGAGGgtaaagacaaatgggtatttaaaatctatctattaagtcccaaacctttt Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacatgcccacagttctggaagacgccactttcatttgttctctagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGCCCT------ACAGAAGAGAAGGATTTGGCAAAAAAGAGGgtaaagacaaatgggtatttaaaatctatctattaagtcccaaacctttt Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacatgcccacagttctggaagacgccactttcatttgttctctagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGCCCTACA------GAAGAGAAGGATTTGGCAAAAAAGAGGgtaaagacaaatgggtatttaaaatctatctattaagtcccaaacctttt #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagggCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGCGGCA-TCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagggCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGCGGCATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGCGGCATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGCGGCATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGCGGCATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGCGGCATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGCGGCATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact #### Sec31b_ID9038_14 --> 2 - 0 Original Alignment acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGAT-GCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagatACTGATGGGCTACTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATCGCTGTTA-TTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from CESAR acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagatACTGATGGGCTACTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATCGCTGTTATTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Spaln_aa2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATCGCTGTTATTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Spaln_nt2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGAT-GCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGCC---CTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATCGCTGTTAT-TTAGCTCA---TGGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Pairagon ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTT------------------GCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGCC---CTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATCGCTGTTATTTAGCTCA---------------------TGGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Exonerate_protein2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATCGCTGTTATTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Exonerate_coding2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCGCTTCTAGCCTGTGTT atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATCGCTGTTATTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTGTAAGGACTGTTGTCcataattgtgttgctcacagccatgtcattcaaca Alignment from GeneWise ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGCCCT---TTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATCGCTGTTATTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCCAAGGAAGCCTCTGAG-TCCTCAGCC---TTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg ggctaaatagatacacttcacacatggtgatctttgtgctctctctgtagGCCACCAAACACGCTGCAAGAGAAACTTCTGAGCTCCT-AGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGggtgagttgttcctgcaaggggatatcactatataggcatcattggtggta Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCC---TCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg ggctaaatagatacacttcacacatggtgatctttgtgctctctctgtagGCCACCAAACACGCTGCAAGAGAAACTTCTGAGCTCCTAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGggtgagttgttcctgcaaggggatatcactatataggcatcattggtggta Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAG---TCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggctaaatagatacacttcacacatggtgatctttgtgctctctctgtagGCCACCAAACACGCTGCAAGAGAAACTTCTGAGCTCCTAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtgagttgttcctgcaaggggatatcactatataggcatcattggtggta Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAG-TCCT--CAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggctaaatagatacacttcacacatggtgatctttgtgctctctctgtagGCCACCAAACACGCTGCAAGAGAAACTTCTGAGCTCCTAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtgagttgttcctgcaaggggatatcactatataggcatcattggtggta Alignment from Pairagon GCCTCCAAACACACTGCCAAGGAAGCCTCTGAG-TCCT--CAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggctaaatagatacacttcacacatggtgatctttgtgctctctctgtagGCCACCAAACACGCTGCAAGAGAAACTTCTGAGCTCCTAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtgagttgttcctgcaaggggatatcactatataggcatcattggtggta Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAG---TCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggctaaatagatacacttcacacatggtgatctttgtgctctctctgtagGCCACCAAACACGCTGCAAGAGAAACTTCTGAGCTCCTAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtgagttgttcctgcaaggggatatcactatataggcatcattggtggta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCC---TCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggctaaatagatacacttcacacatggtgatctttgtgctctctctgtagGCCACCAAACACGCTGCAAGAGAAACTTCTGAGCTCCTAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtgagttgttcctgcaaggggatatcactatataggcatcattggtggta #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTG-CCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggtaagtgttctatgacttttgtctccttttagATAATCTACAAGTTGCCCCACACAGA-CAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCGGTACTTTCTGCAGTCTCTTTTGATGGTTGGATCAGTCTATGTTCCGTAACCGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaagaattggttgtattcataggtaggaaacttgccggaaatacaactt Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggtaagtgttctatgacttttgtctccttttagATAATCTACAAGTTGCCCCACACAGACAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCGGTACTTTCTGCAGTCTCTTTTGATGGTTGGATCAGTCTATGTTCCGTAACCGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaagaattggttgtattcataggtaggaaacttgccggaaatacaactt Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggtaagtgttctatgacttttgtctccttttagATAATCTACAAGTTGCCCCACACAGACAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCGGTACTTTCTGCAGTCTCTTTTGATGGTTGGATCAGTCTATGTTCCGTAACCGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaagaattggttgtattcataggtaggaaacttgccggaaatacaactt Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCC-ACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggtaagtgttctatgacttttgtctccttttagATAATCTACAAGTTGCCCCACACAGA-CAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCGGTACTTTCTGCAGTCTCTTTTGATGGTTGGATCAGTCTATGTTCCGTAACCGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaagaattggttgtattcataggtaggaaacttgccggaaatacaactt Alignment from Pairagon GTGGTCTACAAGCTG-CCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggtaagtgttctatgacttttgtctccttttagATAATCTACAAGTTGCCCCACACAGA-CAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCGGTACTTTCTGCAGTCTCTTTTGATGGTTGGATCAGTCTATGTTCCGTAACCGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaagaattggttgtattcataggtaggaaacttgccggaaatacaactt Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggtaagtgttctatgacttttgtctccttttagATAATCTACAAGTTGCCCCACACAGACAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCGGTACTTTCTGCAGTCTCTTTTGATGGTTGGATCAGTCTATGTTCCGTAACCGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaagaattggttgtattcataggtaggaaacttgccggaaatacaactt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggtaagtgttctatgacttttgtctccttttagATAATCTACAAGTTGCCCCACACAGACAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCGGTACTTTCTGCAGTCTCTTTTGATGGTTGGATCAGTCTATGTTCCGTAACCGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaagaattggttgtattcataggtaggaaacttgccggaaatacaactt #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGC-TTCACAGGCCTTATCATTg agttataaacctgctctcatctaagctggttgtcttttctcatttgctagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCCTTCA-AGGCATTATTATTggtttggaaaatgtaactgatccatcacaattctaagccatgaacattgtt Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg tcctataaacctgctctcatctaagctggttgtcttttctcatttgctagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCCTTCAAGGCATTATTATTggtttggaaaatgtaactgatccatcacaattctaagccatgaacattgtt Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG agttataaacctgctctcatctaagctggttgtcttttctcatttgctagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCCTTCAAGGCATTATTATTGgtttggaaaatgtaactgatccatcacaattctaagccatgaacattgtt Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG agttataaacctgctctcatctaagctggttgtcttttctcatttgctagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCCTTCAAGGCATTATTATTGgtttggaaaatgtaactgatccatcacaattctaagccatgaacattgtt Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG agttataaacctgctctcatctaagctggttgtcttttctcatttgctagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCCTTCAAGGCATTATTATTGgtttggaaaatgtaactgatccatcacaattctaagccatgaacattgtt Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG agttataaacctgctctcatctaagctggttgtcttttctcatttgctagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCCTTCAAGGCATTATTATTGgtttggaaaatgtaactgatccatcacaattctaagccatgaacattgtt Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG agttataaacctgctctcatctaagctggttgtcttttctcatttgctagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCCTTCAAGGCATTATTATTGgtttggaaaatgtaactgatccatcacaattctaagccatgaacattgtt Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG agttataaacctgctctcatctaagctggttgtcttttctcatttgctagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCCTTCAAGGCATTATTATTGgtttggaaaatgtaactgatccatcacaattctaagccatgaacattgtt #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAG-GAGGCACCCATGCACTGGCTCAATg tactagtagggcagcatgtcctgtctattctctgctgctatctcccacagatGGTGGCCTTTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCACACTCTCTGCGAACTGAGCGAAGCAC-AATGCACTGGCTCAATggtgggtatcaggtgctttgaaggtgttggttaaaggggacagctctagtg Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg tactagtagggcagcatgtcctgtctattctctgctgctatctcccacagatGGTGGCCTTTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCACACTCTCTGCGAACTGAGCGAAGCACAATGCACTGGCTCAATggtgggtatcaggtgctttgaaggtgttggttaaaggggacagctctagtg Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tactagtagggcagcatgtcctgtctattctctgctgctatctcccacagATGGTGGCCTTTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCACACTCTCTGCGAACTGAGCGAAGCACAATGCACTGGCTCAATGgtgggtatcaggtgctttgaaggtgttggttaaaggggacagctctagtg Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tactagtagggcagcatgtcctgtctattctctgctgctatctcccacagATGGTGGCCTTTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCACACTCTCTGCGAACTGAGCGAAGCACAATGCACTGGCTCAATGgtgggtatcaggtgctttgaaggtgttggttaaaggggacagctctagtg Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAG-GAGGCACCCATGCACTGGCTCAATG tactagtagggcagcatgtcctgtctattctctgctgctatctcccacagATGGTGGCCTTTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCACACTCTCTGCGAACTGAGCGAAGCA-CAATGCACTGGCTCAATGgtgggtatcaggtgctttgaaggtgttggttaaaggggacagctctagtg Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tactagtagggcagcatgtcctgtctattctctgctgctatctcccacagATGGTGGCCTTTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCACACTCTCTGCGAACTGAGCGAAGCACAATGCACTGGCTCAATGgtgggtatcaggtgctttgaaggtgttggttaaaggggacagctctagtg Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tactagtagggcagcatgtcctgtctattctctgctgctatctcccacagATGGTGGCCTTTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCACACTCTCTGCGAACTGAGCGAAGCACAATGCACTGGCTCAATGgtgggtatcaggtgctttgaaggtgttggttaaaggggacagctctagtg Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tactagtagggcagcatgtcctgtctattctctgctgctatctcccacagATGGTGGCCTTTACACAGCCACCTGGTACGAATTCCGGAGCATTCCTGATATTAGGAGGAGCCGACACCCACACTCTCTGCGAACTGAGCGAAGCACAATGCACTGGCTCAATGgtgggtatcaggtgctttgaaggtgttggttaaaggggacagctctagtg #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGG-GTGCCTGAACCCCGGCCTGGCTCG agagagaagtggataagttcattggtgtaatggccccgtgtctctgccaggAAAACACTGGAGGCGTCAGAGATATGCCGGCATGATTTGGCAGAGATTCATGCTGTTTTC---AGTCCCTTTATGGAGTACCAGGATGGTGCCCGCTGCTGGGGGTGTTATGGGGGTGGACGTACATC-ACCCCAACCAGGCTTAgtaagtacctaaaatttggagcacactatgtgaaaacatagtaacagggt Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG agagagaagtggataagttcattggtgtaatggccccgtgtctctgccaggAAAACACTGGAGGCGTCAGAGATATGCCGGCATGATTTGGCAGAGATTCATGCTGTTTTC---AGTCCCTTTATGGAGTACCAGGATGGTGCCCGCTGCTGGGGGTGTTATGGGGGTGGACGTACATCACCCCAACCAGGCTTAgtaagtacctaaaatttggagcacactatgtgaaaacatagtaacagggt Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG agagagaagtggataagttcattggtgtaatggccccgtgtctctgccagGAAAACACTGGAGGCGTCAGAGATATGCCGGCATGATTTGGCAGAGATTCATGCTGTTTTCAGT---CCCTTTATGGAGTACCAGGATGGTGCCCGCTGCTGGGGGTGTTATGGGGGTGGACGTACATCACCCCAACCAGGCTTAgtaagtacctaaaatttggagcacactatgtgaaaacatagtaacagggt Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG agagagaagtggataagttcattggtgtaatggccccgtgtctctgccagGAAAACACTGGAGGCGTCAGAGATATGCCGGCATGATTTGGCAGAGATTCATGCTGTTTTCA---GTCCCTTTATGGAGTACCAGGATGGTGCCCGCTGCTGGGGGTGTTATGGGGGTGGACGTACATCACCCCAACCAGGCTTAgtaagtacctaaaatttggagcacactatgtgaaaacatagtaacagggt Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGA--------ACCCCGGCCTGGCTCG agagagaagtggataagttcattggtgtaatggccccgtgtctctgccagGAAAACACTGGAGGCGTCAGAGATATGCCGGCATGATTTGGCAGAGATTCATGCTGTTTTCA---GTCCCTTTATGGAGTACCAGGATGGTGCCCGCTGCTGGGGGTGTTATGGGGGTG--------GACGTACATCACCCCAACCAGGCTTAgtaagtacctaaaatttggagcacactatgtgaaaacatagtaacagggt Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG agagagaagtggataagttcattggtgtaatggccccgtgtctctgccagGAAAACACTGGAGGCGTCAGAGATATGCCGGCATGATTTGGCAGAGATTCATGCTGTTTTCAGT---CCCTTTATGGAGTACCAGGATGGTGCCCGCTGCTGGGGGTGTTATGGGGGTGGACGTACATCACCCCAACCAGGCTTAgtaagtacctaaaatttggagcacactatgtgaaaacatagtaacagggt Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG agagagaagtggataagttcattggtgtaatggccccgtgtctctgccagGAAAACACTGGAGGCGTCAGAGATATGCCGGCATGATTTGGCAGAGATTCATGCTGTTTTCAGT---CCCTTTATGGAGTACCAGGATGGTGCCCGCTGCTGGGGGTGTTATGGGGGTGGACGTACATCACCCCAACCAGGCTTAgtaagtacctaaaatttggagcacactatgtgaaaacatagtaacagggt Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG agagagaagtggataagttcattggtgtaatggccccgtgtctctgccagGAAAACACTGGAGGCGTCAGAGATATGCCGGCATGATTTGGCAGAGATTCATGCTGTTTTCAGT---CCCTTTATGGAGTACCAGGATGGTGCCCGCTGCTGGGGGTGTTATGGGGGTGGACGTACATCACCCCAACCAGGCTTAgtaagtacctaaaatttggagcacactatgtgaaaacatagtaacagggt #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGT-GGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tgacatggggggtctaatacttctcatcttaccttctccctgcatcacagCATAGCCTATATGTGGGGGCTGCAAGTGGAATT---CAGTTTCCTCTTTCTAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCACGAGACCCCTACTGTCGGCTGGG-TTCCAGTATCCATGTGTGTATGGTGGCCACTACGGTAGCAAACaggtatatagaccaaatatcacagcgccctgttcatcaactggtagtggtat Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tgacatggggggtctaatacttctcatcttaccttctccctgcatcacagCATAGCCTATATGTGGGGGCTGCAAGTGGAATT---CAGTTTCCTCTTTCTAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCACGAGACCCCTACTGTCGGCTGGGTTCCAGTATCCATGTGTGTATGGTGGCCACTACGGTAGCAAACaggtatatagaccaaatatcacagcgccctgttcatcaactggtagtggtat Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgacatggggggtctaatacttctcatcttaccttctccctgcatcacagCATAGCCTATATGTGGGGGCTGCAAGTGGAATT---CAGTTTCCTCTTTCTAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCACGAGACCCCTACTGTCGGCTGGGTTCCAGTATCCATGTGTGTATGGTGGCCACTACGGTAGCAAACAGgtatatagaccaaatatcacagcgccctgttcatcaactggtagtggtat Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgacatggggggtctaatacttctcatcttaccttctccctgcatcacagCATAGCCTATATGTGGGGGCTGCAAGTGGA---ATTCAGTTTCCTCTTTCTAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCACGAGACCCCTACTGTCGGCTGGGTTCCAGTATCCATGTGTGTATGGTGGCCACTACGGTAGCAAACAGgtatatagaccaaatatcacagcgccctgttcatcaactggtagtggtat Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgacatggggggtctaatacttctcatcttaccttctccctgcatcacagCATAGCCTATATGTGGGGGCTGCAAGTGGAA---TTCAGTTTCCTCTTTCTAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCACGAGACCCCTACTGTCGGCTGGGTTCCAGTATCCATGTGTGTATGGTGGCCACTACGGTAGCAAACAGgtatatagaccaaatatcacagcgccctgttcatcaactggtagtggtat Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgacatggggggtctaatacttctcatcttaccttctccctgcatcacagCATAGCCTATATGTGGGGGCTGCAAGTGGAATT---CAGTTTCCTCTTTCTAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCACGAGACCCCTACTGTCGGCTGGGTTCCAGTATCCATGTGTGTATGGTGGCCACTACGGTAGCAAACAGgtatatagaccaaatatcacagcgccctgttcatcaactggtagtggtat Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgacatggggggtctaatacttctcatcttaccttctccctgcatcacagCATAGCCTATATGTGGGGGCTGCAAGTGGAATT---CAGTTTCCTCTTTCTAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCACGAGACCCCTACTGTCGGCTGGGTTCCAGTATCCATGTGTGTATGGTGGCCACTACGGTAGCAAACAGgtatatagaccaaatatcacagcgccctgttcatcaactggtagtggtat Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgacatggggggtctaatacttctcatcttaccttctccctgcatcacagCATAGCCTATATGTGGGGGCTGCAAGTGGAATT---CAGTTTCCTCTTTCTAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCACGAGACCCCTACTGTCGGCTGGGTTCCAGTATCCATGTGTGTATGGTGGCCACTACGGTAGCAAACAGgtatatagaccaaatatcacagcgccctgttcatcaactggtagtggtat #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGT-ACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg tagtcttagatgccctcccattgatttctttctctcctgatgttttccagacCAGTATCAAGGGAGTCACACCCG-GGCCTCGGGAGTTTATCATTTGCATCAAGGAAAGggtgagtctataacttttgatggtgtctctcatgattggggccaattggca Alignment from CESAR atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg tagtcttagatgccctcccattgatttctttctctcctgatgttttccagacCAGTATCAAGGGAGTCACACCCGGGCCTCGGGAGTTTATCATTTGCATCAAGGAAAGggtgagtctataacttttgatggtgtctctcatgattggggccaattggca Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tagtcttagatgccctcccattgatttctttctctcctgatgttttccagACCAGTATCAAGGGAGTCACACCCGGGCCTCGGGAGTTTATCATTTGCATCAAGGAAAGGgtgagtctataacttttgatggtgtctctcatgattggggccaattggca Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGT-ACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tagtcttagatgccctcccattgatttctttctctcctgatgttttccagACCAGTATCAAGGGAGTCACACCCG-GGCCTCGGGAGTTTATCATTTGCATCAAGGAAAGGgtgagtctataacttttgatggtgtctctcatgattggggccaattggca Alignment from Pairagon ATCAGT--------------ACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tagtcttagatgccctcccattgatttctttctctcctgatgttttccagACCAGTATCAAGGGAGTCACACCCGGGC--------------CTCGGGAGTTTATCATTTGCATCAAGGAAAGGgtgagtctataacttttgatggtgtctctcatgattggggccaattggca Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tagtcttagatgccctcccattgatttctttctctcctgatgttttccagACCAGTATCAAGGGAGTCACACCCGGGCCTCGGGAGTTTATCATTTGCATCAAGGAAAGGgtgagtctataacttttgatggtgtctctcatgattggggccaattggca Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tagtcttagatgccctcccattgatttctttctctcctgatgttttccagACCAGTATCAAGGGAGTCACACCCGGGCCTCGGGAGTTTATCATTTGCATCAAGGAAAGGgtgagtctataacttttgatggtgtctctcatgattggggccaattggca Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tagtcttagatgccctcccattgatttctttctctcctgatgttttccagACCAGTATCAAGGGAGTCACACCCGGGCCTCGGGAGTTTATCATTTGCATCAAGGAAAGGgtgagtctataacttttgatggtgtctctcatgattggggccaattggca #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAA-AGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag tcccgcgacttgttccacagttgaagaaaattgtcttttttgccccccagGCCAAAGCAGAAAAAGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAAGATCAGTG-TGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATaggtaagtactaagttgtctctcatcagtgaccttcatggcactgtggtgat Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag tcccgcgacttgttccacagttgaagaaaattgtcttttttgccccccagGCCAAAGCAGAAAAAGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAAGATCAGTGTGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATaggtaagtactaagttgtctctcatcagtgaccttcatggcactgtggtgat Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG tcccgcgacttgttccacagttgaagaaaattgtcttttttgccccccagGCCAAAGCAGAAAAAGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAAGATCAGTGTGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtaagtactaagttgtctctcatcagtgaccttcatggcactgtggtgat Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG tcccgcgacttgttccacagttgaagaaaattgtcttttttgccccccagGCCAAAGCAGAAAAAGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAAGATCAGTGTGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtaagtactaagttgtctctcatcagtgaccttcatggcactgtggtgat Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG tcccgcgacttgttccacagttgaagaaaattgtcttttttgccccccagGCCAAAGCAGAAAAAGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAAGATCAGTGTGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtaagtactaagttgtctctcatcagtgaccttcatggcactgtggtgat Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG tcccgcgacttgttccacagttgaagaaaattgtcttttttgccccccagGCCAAAGCAGAAAAAGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAAGATCAGTGTGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtaagtactaagttgtctctcatcagtgaccttcatggcactgtggtgat Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG tcccgcgacttgttccacagttgaagaaaattgtcttttttgccccccagGCCAAAGCAGAAAAAGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAAGATCAGTGTGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtaagtactaagttgtctctcatcagtgaccttcatggcactgtggtgat Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG tcccgcgacttgttccacagttgaagaaaattgtcttttttgccccccagGCCAAAGCAGAAAAAGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAAGAAGAGGAAGATCAGTGTGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGATAGgtaagtactaagttgtctctcatcagtgaccttcatggcactgtggtgat #### Sf3b2_ID908_10 --> 0 - 0 Original Alignment CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGAT-GACAGCAGTGATGATGAGCAG ggttgaggcagagactgtattatgcctgctcctgccctctgaccctacagTTAACAGATGAGGTCAGGAAAGAGAAAGAAAAGGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTACAGTTCCAAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGCGATGATCGATA-CAGTGATGATGAACAAgtaagagatatgcaattatgaattgagttatgtgattatggatttttgat Alignment from CESAR CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG ggttgaggcagagactgtattatgcctgctcctgccctctgaccctacagTTAACAGATGAGGTCAGGAAAGAGAAAGAAAAGGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTACAGTTCCAAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGCGATGATCGATACAGTGATGATGAACAAgtaagagatatgcaattatgaattgagttatgtgattatggatttttgat Alignment from Spaln_aa2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG ggttgaggcagagactgtattatgcctgctcctgccctctgaccctacagTTAACAGATGAGGTCAGGAAAGAGAAAGAAAAGGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTACAGTTCCAAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGCGATGATCGATACAGTGATGATGAACAAgtaagagatatgcaattatgaattgagttatgtgattatggatttttgat Alignment from Spaln_nt2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG ggttgaggcagagactgtattatgcctgctcctgccctctgaccctacagTTAACAGATGAGGTCAGGAAAGAGAAAGAAAAGGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTACAGTTCCAAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGCGATGATCGATACAGTGATGATGAACAAgtaagagatatgcaattatgaattgagttatgtgattatggatttttgat Alignment from Pairagon CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG ggttgaggcagagactgtattatgcctgctcctgccctctgaccctacagTTAACAGATGAGGTCAGGAAAGAGAAAGAAAAGGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTACAGTTCCAAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGCGATGATCGATACAGTGATGATGAACAAgtaagagatatgcaattatgaattgagttatgtgattatggatttttgat Alignment from Exonerate_protein2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG ggttgaggcagagactgtattatgcctgctcctgccctctgaccctacagTTAACAGATGAGGTCAGGAAAGAGAAAGAAAAGGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTACAGTTCCAAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGCGATGATCGATACAGTGATGATGAACAAgtaagagatatgcaattatgaattgagttatgtgattatggatttttgat Alignment from Exonerate_coding2genome ggttgaggcagagactgtattatgcctgctcctgccctctgaccctacagttaacagatgaggtcaggaaagagaaagaaaaggagcctgagaagcttgacacaatggaaagccctacagttccaaagaaaaagggctatgaagaggagcgtaaggaaagcgatgatcgatacagtgatgatgaacaagtaagagatatgcaattatgaattgagttatgtgattatggatttttgat Alignment from GeneWise CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG ggttgaggcagagactgtattatgcctgctcctgccctctgaccctacagTTAACAGATGAGGTCAGGAAAGAGAAAGAAAAGGAGCCTGAGAAGCTTGACACAATGGAAAGCCCTACAGTTCCAAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGCGATGATCGATACAGTGATGATGAACAAgtaagagatatgcaattatgaattgagttatgtgattatggatttttgat #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTGTTC-TGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ttgagaatcttatacatctgaacccagtaacacttcctttcttcccacagaAAGACTCCTACTGTGGTGTTTCTGGCAGT-GGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCaggtgagacacaactgtacactaacaaccccagtccccatggttatggttgt Alignment from CESAR gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ttgagaatcttatacatctgaacccagtaacacttcctttcttcccacagaAAGACTCCTACTGTGGTGTTTCTGGCAGTGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCaggtgagacacaactgtacactaacaaccccagtccccatggttatggttgt Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ttgagaatcttatacatctgaacccagtaacacttcctttcttcccacagAAAGACTCCTACTGTGGTGTTTCTGGCAGTGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagacacaactgtacactaacaaccccagtccccatggttatggttgt Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ttgagaatcttatacatctgaacccagtaacacttcctttcttcccacagAAAGACTCCTACTGTGGTGTTTCTGGCAGTGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagacacaactgtacactaacaaccccagtccccatggttatggttgt Alignment from Pairagon GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ttgagaatcttatacatctgaacccagtaacacttcctttcttcccacagAAAGACTCCTACTGTGGTGTTTCTGGCAGT-GGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagacacaactgtacactaacaaccccagtccccatggttatggttgt Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ttgagaatcttatacatctgaacccagtaacacttcctttcttcccacagAAAGACTCCTACTGTGGTGTTTCTGGCAGTGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagacacaactgtacactaacaaccccagtccccatggttatggttgt Alignment from Exonerate_coding2genome ttgagaatcttatacatctgaacccagtaacacttcctttcttcccacagaaagactcctactgtggtgtttctggcagtggtgaataaatcatttaatgctattattaactactctaatcggagtggagatgcccctatcactgtcaggtgagacacaactgtacactaacaaccccagtccccatggttatggttgt Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ttgagaatcttatacatctgaacccagtaacacttcctttcttcccacagAAAGACTCCTACTGTGGTGTTTCTGGCAGTGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagacacaactgtacactaacaaccccagtccccatggttatggttgt #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTG-GGACTCAAGTCTCTCACCAAG cagcctaaactcccaaacttggttgcttttttctttttaattccttacaggCCGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACGGCCCTGCGGAC-AAAGTCTCTGACCAAGgttcgttttccctccttctttctaaagtttcaccctcacacggtcaccac Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcctaaactcccaaacttggttgcttttttctttttaattccttacaggCCGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACGGCCCTGCGGACAAAGTCTCTGACCAAGgttcgttttccctccttctttctaaagtttcaccctcacacggtcaccac Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcctaaactcccaaacttggttgcttttttctttttaattccttacagGCCGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACGGCCCTGCGGACAAAGTCTCTGACCAAGgttcgttttccctccttctttctaaagtttcaccctcacacggtcaccac Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcctaaactcccaaacttggttgcttttttctttttaattccttacagGCCGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACGGCCCTGCGGACAAAGTCTCTGACCAAGgttcgttttccctccttctttctaaagtttcaccctcacacggtcaccac Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcctaaactcccaaacttggttgcttttttctttttaattccttacagGCCGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACGGCCCTGCGGACAAAGTCTCTGACCAAGgttcgttttccctccttctttctaaagtttcaccctcacacggtcaccac Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcctaaactcccaaacttggttgcttttttctttttaattccttacagGCCGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACGGCCCTGCGGACAAAGTCTCTGACCAAGgttcgttttccctccttctttctaaagtttcaccctcacacggtcaccac Alignment from Exonerate_coding2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCAGCAGTTGGGGACAGCCTATGTGAGTGC cagcctaaactcccaaacttggttgcttttttctttttaattccttacagGCCGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACGGCCCTGCGGACAAAGTCTCTGACCAAGGTTCGTTTTCCCTCCTTCTTTCTAAAGTTTCACCCTCACACGGTCACCAC Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcctaaactcccaaacttggttgcttttttctttttaattccttacagGCCGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACGGCCCTGCGGACAAAGTCTCTGACCAAGgttcgttttccctccttctttctaaagtttcaccctcacacggtcaccac #### Sfxn3_ID9290_8 --> 0 - 2 Original Alignment CGCCGTCCCTGGCTG-GGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg aacaaagtagtactagtgcaccgcagtatcacccacctctccctttgcagGGCTGCCCCTGGCTTCGGGA-TCCTCTGCAGGTGGGTCTGGTAGACTTCtggtaagatggacggtgtttatcaagaagccctcactgtttaggaggccatg Alignment from CESAR CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg aacaaagtagtactagtgcaccgcagtatcacccacctctccctttgcagGGCTGCCCCTGGCTTCGGGATCCTCTGCAGGTGGGTCTGGTAGACTTCtggtaagatggacggtgtttatcaagaagccctcactgtttaggaggccatg Alignment from Spaln_aa2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG aacaaagtagtactagtgcaccgcagtatcacccacctctccctttgcagGGCTGCCCCTGGCTTCGGGATCCTCTGCAGGTGGGTCTGGTAGACTTCTGgtaagatggacggtgtttatcaagaagccctcactgtttaggaggccatg Alignment from Spaln_nt2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG aacaaagtagtactagtgcaccgcagtatcacccacctctccctttgcagGGCTGCCCCTGGCTTCGGGATCCTCTGCAGGTGGGTCTGGTAGACTTCTGgtaagatggacggtgtttatcaagaagccctcactgtttaggaggccatg Alignment from Pairagon CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG aacaaagtagtactagtgcaccgcagtatcacccacctctccctttgcagGGCTGCCCCTGGCTTCGGGATCCTCTGCAGGTGGGTCTGGTAGACTTCTGgtaagatggacggtgtttatcaagaagccctcactgtttaggaggccatg Alignment from Exonerate_protein2genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG aacaaagtagtactagtgcaccgcagtatcacccacctctccctttgcagGGCTGCCCCTGGCTTCGGGATCCTCTGCAGGTGGGTCTGGTAGACTTCTGgtaagatggacggtgtttatcaagaagccctcactgtttaggaggccatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG aacaaagtagtactagtgcaccgcagtatcacccacctctccctttgcagGGCTGCCCCTGGCTTCGGGATCCTCTGCAGGTGGGTCTGGTAGACTTCTGgtaagatggacggtgtttatcaagaagccctcactgtttaggaggccatg #### Sfxn3_ID9291_9 --> 1 - 2 Original Alignment cTTGGTATTTGCCACACCCCTGTGC-TGCGCTCTGTTCCCTCAGAGAag actgtttaggaggccatgctttcacaaactgctatctctttctacctcagcCTGGTATTCGCCAACCCCCTGTGTCTGTGCCT-GTTTCCACAGAGAgcgtgagtgagtgatacctaacattgtcattttggggcccatagtaccattt Alignment from CESAR cTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAag actgtttaggaggccatgctttcacaaactgctatctctttctacctcagcCTGGTATTCGCCAACCCCCTGTGTCTGTGCCTGTTTCCACAGAGAgcgtgagtgagtgatacctaacattgtcattttggggcccatagtaccattt Alignment from Spaln_aa2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actgtttaggaggccatgctttcacaaactgctatctctttctacctcagCCTGGTATTCGCCAACCCCCTGTGTCTGTGCCTGTTTCCACAGAGAGCgtgagtgagtgatacctaacattgtcattttggggcccatagtaccattt Alignment from Spaln_nt2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actgtttaggaggccatgctttcacaaactgctatctctttctacctcagCCTGGTATTCGCCAACCCCCTGTGTCTGTGCCTGTTTCCACAGAGAGCgtgagtgagtgatacctaacattgtcattttggggcccatagtaccattt Alignment from Pairagon CTTGGTATTTGCCACACCCCTGTG-CTGCGCTCTGTTCCCTCAGAGAAG actgtttaggaggccatgctttcacaaactgctatctctttctacctcagCCTGGTATTCGCCAACCCCCTGTGTCTGTGC-CTGTTTCCACAGAGAGCgtgagtgagtgatacctaacattgtcattttggggcccatagtaccattt Alignment from Exonerate_protein2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actgtttaggaggccatgctttcacaaactgctatctctttctacctcagCCTGGTATTCGCCAACCCCCTGTGTCTGTGCCTGTTTCCACAGAGAGCgtgagtgagtgatacctaacattgtcattttggggcccatagtaccattt Alignment from Exonerate_coding2genome actgtttaggaggccatgctttcacaaactgctatctctttctacctcagcctggtattcgccaaccccctgtgtctgtgcctgtttccacagagagcgtgagtgagtgatacctaacattgtcattttggggcccatagtaccattt Alignment from GeneWise actgtttaggaggccatgctttcacaaactgctatctctttctacctcagcctggtattcgccaaccccctgtgtctgtgcctgtttccacagagagcgtgagtgagtgatacctaacattgtcattttggggcccatagtaccattt #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTGTCA-GAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcaggCCA---CCTGGGAGCTTATCACGGAAAGGTGT-TCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcaggCCA---CCTGGGAGCTTATCACGGAAAGGTGTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCCA---CCTGGGAGCTTATCACGGAAAGGTGTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCA-GAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCC---ACCTGGGAGCTTATCACGGAAAGGTGT-TCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCA-GAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCC---ACCTGGGAGCTTATCACGGAAAGGTGT-TCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCCA---CCTGGGAGCTTATCACGGAAAGGTGTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Exonerate_coding2genome tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcaggccacctgggagcttatcacggaaaggtgttcatctagagtccatgctctggaaattgcaagaagatctgcagcgggtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCCA---CCTGGGAGCTTATCACGGAAAGGTGTTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment gaCAACCCATCTCAGAG-AGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga ggggatgctgttcattgggcttttgcaagagggttatttctctgctccagggCAATCAATCTCTGAACAGTGGTG-TCTCAAGGAGGCTTCAAAGTGTGATTCTgagtcagcctcctcttgtgatcatgttgcttaattttctgtcgggtgtaata Alignment from CESAR gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga ggggatgctgttcattgggcttttgcaagagggttatttctctgctccagggCAATCAATCTCTGAACAGTGGTGTCTCAAGGAGGCTTCAAAGTGTGATTCTgagtcagcctcctcttgtgatcatgttgcttaattttctgtcgggtgtaact Alignment from Spaln_aa2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggggatgctgttcattgggcttttgcaagagggttatttctctgctccagGGCAATCAATCTCTGAACAGTGGTGTCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtcagcctcctcttgtgatcatgttgcttaattttctgtcgggtgtaata Alignment from Spaln_nt2Genome GACAACCCATCTCAGAG-AGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggggatgctgttcattgggcttttgcaagagggttatttctctgctccagGGCAATCAATCTCTGAACAGTGGTG-TCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtcagcctcctcttgtgatcatgttgcttaattttctgtcgggtgtaata Alignment from Pairagon GACAACCCATCTCAGAGAGCGGAGAC--------CCCAAGGAAGCTTTAAAGTGTGATTCTGAGCCAG--------------------------------------------- ggggatgctgttcattgggcttttgcaagagggttatttctctgctccagGGCAATCAATCTCTGA--------ACAGTGGTGTCTCAAGGAGGCTTCAAAGTGTGATTCTGAGTCAGCCTCCTCTTGTGATCATGTTGCTTAATTTTCTGTCGGGTGTAATA Alignment from Exonerate_protein2genome ggggatgctgttcattgggcttttgcaagagggttatttctctgctccagggcaatcaatctctgaacagtggtgtctcaaggaggcttcaaagtgtgattctgagtcagcctcctcttgtgatcatgttgcttaattttctgtcgggtgtaata Alignment from Exonerate_coding2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggggatgctgttcattgggcttttgcaagagggttatttctctgctccagGGCAATCAATCTCTGAACAGTGGTGTCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtcagcctcctcttgtgatcatgttgcttaattttctgtcgggtgtaata Alignment from GeneWise GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggggatgctgttcattgggcttttgcaagagggttatttctctgctccagGGCAATCAATCTCTGAACAGTGGTGTCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtcagcctcctcttgtgatcatgttgcttaattttctgtcgggtgtaata #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGC-AACACAATTCTGGAGTCACTGTCCCGGGAGg taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagttATGCCGGAAGCTGCCACTGAAACATTGGAT---GAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAATCC-GGAGTCCCTGTCTCGGGAAggtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaac Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagttATGCCGGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAATCCGGAGTCCCTGTCTCGGGAAggtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaag Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAATCCGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaac Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATT---GGATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAATCCGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaac Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTG-CAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATT---GGATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAA-TCCGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaac Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAATCCGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaac Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAATCCGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaac Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCCAACACAATCCGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaac #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCAC-GCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttgtctgggcactcaaacttccctgtgatcactgatgtccccacaggGTTGCGGTGAGTTGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGTGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAGGCAGCTGGCCACACAAGGCAGTTCCATCGCCATGA-TACATGTACACGGCAACAG---CTGCAAGAGTTGGCAAAAAATGAGGTGAGTACTACTTTGCTAGACCTGGCCTCCCGATCTGGGTTACCGTCCCTTGGTGGCAGAGACCAC------CCACAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACATGCGGCTCCTGGGGCACGGGTTGCAGCAGGGGCTGAAACAAAAGGGCCAGAAGATACTGAAGTACCTTGTTTATTGGGTATTTCTGCTGAGACACTAGTGCTGGTCACACCTTCTGATAGTCATGTGGCCTTTAACTGTACGTGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATTACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTGGTGGCACGTCTGCAAgtgaggtgcaactacacaggagaaaggtacaatgcaattactggagtaag Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttgtctgggcactcaaacttccctgtgatcactgatgtccccacaggGTTGCGGTGAGTTGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGTGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAGGCAGCTGGCCACACAAGGCAGTTCCATCGCCATGATACATGTACACGGCAACAG---CTGCAAGAGTTGGCAAAAAATGAGGTGAGTACTACTTTGCTAGACCTGGCCTCCCGATCTGGGTTACCGTCCCTTGGTGGCAGAGACCAC------CCACAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACATGCGGCTCCTGGGGCACGGGTTGCAGCAGGGGCTGAAACAAAAGGGCCAGAAGATACTGAAGTACCTTGTTTATTGGGTATTTCTGCTGAGACACTAGTGCTGGTCACACCTTCTGATAGTCATGTGGCCTTTAACTGTACGTGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATTACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTGGTGGCACGTCTGCAAgtgaggtgcaactacacaggagaaaggtacaatgcaattactggagtaag Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttgtctgggcactcaaacttccctgtgatcactgatgtccccacagGGTTGCGGTGAGTTGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGTGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAGGCAGCTGGCCACACAAGGCAGTTCCATCGCCATGATACATGTACACGGCAACAG---CTGCAAGAGTTGGCAAAAAATGAGGTGAGTACTACTTTGCTAGACCTGGCCTCCCGATCTGGGTTACCGTCCCTTGGTGGCAGAGACCAC------CCACAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACATGCGGCTCCTGGGGCACGGGTTGCAGCAGGGGCTGAAACAAAAGGGCCAGAAGATACTGAAGTACCTTGTTTATTGGGTATTTCTGCTGAGACACTAGTGCTGGTCACACCTTCTGATAGTCATGTGGCCTTTAACTGTACGTGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATTACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTGGTGGCACGTCTGCAAgtgaggtgcaactacacaggagaaaggtacaatgcaattactggagtaag Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCA-CGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttgtctgggcactcaaacttccctgtgatcactgatgtccccacagGGTTGCGGTGAGTTGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGTGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAGGCAGCTGGCCACACAAGGCAGTTCCATCGCCAT-GATACATGTACACGGCAACAG---CTGCAAGAGTTGGCAAAAAATGAGGTGAGTACTACTTTGCTAGACCTGGCCTCCCGATCTGGGTTACCGTCCCTTGGTGGCAGAGACC------ACCCACAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACATGCGGCTCCTGGGGCACGGGTTGCAGCAGGGGCTGAAACAAAAGGGCCAGAAGATACTGAAGTACCTTGTTTATTGGGTATTTCTGCTGAGACACTAGTGCTGGTCACACCTTCTGATAGTCATGTGGCCTTTAACTGTACGTGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATTACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTGGTGGCACGTCTGCAAgtgaggtgcaactacacaggagaaaggtacaatgcaattactggagtaag Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCA-CGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCA-------------GGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttgtctgggcactcaaacttccctgtgatcactgatgtccccacagGGTTGCGGTGAGTTGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGTGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAGGCAGCTGGCCACACAAGGCAGTTCCATCGCCATGA-TACATGTACACGGCAACAG---CTGCAAGAGTTGGCAAAAAATGAGGTGAGTACTACTTTGCTAGACCTGGCCTCCCGATCTGGGTTACCGTCCCTTGGTGGCA-------------------GAGACCACCCACAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACATGCGGCTCCTGGGGCACGGGTTGCAGCAGGGGCTGAAACAAAAGGGCCAGAAGATACTGAAGTACCTTGTTTATTGGGTATTTCTGCTGAGACACTAGTGCTGGTCACACCTTCTGATAGTCATGTGGCCTTTAACTGTACGTGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATTACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTGGTGGCACGTCTGCAAgtgaggtgcaactacacaggagaaaggtacaatgcaattactggagtaag Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttgtctgggcactcaaacttccctgtgatcactgatgtccccacagGGTTGCGGTGAGTTGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGTGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAGGCAGCTGGCCACACAAGGCAGTTCCATCGCCATGATACATGTACACGGCAACAG---CTGCAAGAGTTGGCAAAAAATGAGGTGAGTACTACTTTGCTAGACCTGGCCTCCCGATCTGGGTTACCGTCCCTTGGTGGCAGAGACCAC------CCACAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACATGCGGCTCCTGGGGCACGGGTTGCAGCAGGGGCTGAAACAAAAGGGCCAGAAGATACTGAAGTACCTTGTTTATTGGGTATTTCTGCTGAGACACTAGTGCTGGTCACACCTTCTGATAGTCATGTGGCCTTTAACTGTACGTGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATTACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTGGTGGCACGTCTGCAAgtgaggtgcaactacacaggagaaaggtacaatgcaattactggagtaag Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttgtctgggcactcaaacttccctgtgatcactgatgtccccacagGGTTGCGGTGAGTTGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGTGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAGGCAGCTGGCCACACAAGGCAGTTCCATCGCCATGATACATGTACACGGCAACAG---CTGCAAGAGTTGGCAAAAAATGAGGTGAGTACTACTTTGCTAGACCTGGCCTCCCGATCTGGGTTACCGTCCCTTGGTGGCAGAGACCAC------CCACAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACATGCGGCTCCTGGGGCACGGGTTGCAGCAGGGGCTGAAACAAAAGGGCCAGAAGATACTGAAGTACCTTGTTTATTGGGTATTTCTGCTGAGACACTAGTGCTGGTCACACCTTCTGATAGTCATGTGGCCTTTAACTGTACGTGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATTACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTGGTGGCACGTCTGCAAgtgaggtgcaactacacaggagaaaggtacaatgcaattactggagtaag Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttgtctgggcactcaaacttccctgtgatcactgatgtccccacagGGTTGCGGTGAGTTGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGTGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAGGCAGCTGGCCACACAAGGCAGTTCCATCGCCATGATACATGTACACGGCAACAG---CTGCAAGAGTTGGCAAAAAATGAGGTGAGTACTACTTTGCTAGACCTGGCCTCCCGATCTGGGTTACCGTCCCTTGGTGGCAGAGACCAC------CCACAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACATGCGGCTCCTGGGGCACGGGTTGCAGCAGGGGCTGAAACAAAAGGGCCAGAAGATACTGAAGTACCTTGTTTATTGGGTATTTCTGCTGAGACACTAGTGCTGGTCACACCTTCTGATAGTCATGTGGCCTTTAACTGTACGTGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATTACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTGGTGGCACGTCTGCAAgtgaggtgcaactacacaggagaaaggtacaatgcaattactggagtaag #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACC-ATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag cttgagccactgaagctcaggtatttttattgatttgtttctttgcacagCTATTAAGGAAATGTCACATCAGTAACTACATTGTGACTCATTGTTTTTC-AGAGCCTGGCAGCAAACCATTCTGTCCTAAGACAGTATGCTCTCACTTCCCACATGTTTTCTTGGTGGTGCGAGCATTTGCTTCTTGCACTCCCCACACATCATACaggtaagtacttggttaagctgggatctcagggatgggtaaattgtcatggt Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag cttgagccactgaagctcaggtatttttattgatttgtttctttgcacagCTATTAAGGAAATGTCACATCAGTAACTACATTGTGACTCATTGTTTTTCAGAGCCTGGCAGCAAACCATTCTGTCCTAAGACAGTATGCTCTCACTTCCCACATGTTTTCTTGGTGGTGCGAGCATTTGCTTCTTGCACTCCCCACACATCATACaggtaagtacttggttaagctgggatctcagggatgggtaaattgtcatggt Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaagctcaggtatttttattgatttgtttctttgcacagCTATTAAGGAAATGTCACATCAGTAACTACATTGTGACTCATTGTTTTTCAGAGCCTGGCAGCAAACCATTCTGTCCTAAGACAGTATGCTCTCACTTCCCACATGTTTTCTTGGTGGTGCGAGCATTTGCTTCTTGCACTCCCCACACATCATACAGgtaagtacttggttaagctgggatctcagggatgggtaaattgtcatggt Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGAC-CATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaagctcaggtatttttattgatttgtttctttgcacagCTATTAAGGAAATGTCACATCAGTAACTACATTGTGACTCATTGTTTTTCA-GAGCCTGGCAGCAAACCATTCTGTCCTAAGACAGTATGCTCTCACTTCCCACATGTTTTCTTGGTGGTGCGAGCATTTGCTTCTTGCACTCCCCACACATCATACAGgtaagtacttggttaagctgggatctcagggatgggtaaattgtcatggt Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGAC-CATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaagctcaggtatttttattgatttgtttctttgcacagCTATTAAGGAAATGTCACATCAGTAACTACATTGTGACTCATTGTTTTTCA-GAGCCTGGCAGCAAACCATTCTGTCCTAAGACAGTATGCTCTCACTTCCCACATGTTTTCTTGGTGGTGCGAGCATTTGCTTCTTGCACTCCCCACACATCATACAGgtaagtacttggttaagctgggatctcagggatgggtaaattgtcatggt Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaagctcaggtatttttattgatttgtttctttgcacagCTATTAAGGAAATGTCACATCAGTAACTACATTGTGACTCATTGTTTTTCAGAGCCTGGCAGCAAACCATTCTGTCCTAAGACAGTATGCTCTCACTTCCCACATGTTTTCTTGGTGGTGCGAGCATTTGCTTCTTGCACTCCCCACACATCATACAGgtaagtacttggttaagctgggatctcagggatgggtaaattgtcatggt Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaagctcaggtatttttattgatttgtttctttgcacagCTATTAAGGAAATGTCACATCAGTAACTACATTGTGACTCATTGTTTTTCAGAGCCTGGCAGCAAACCATTCTGTCCTAAGACAGTATGCTCTCACTTCCCACATGTTTTCTTGGTGGTGCGAGCATTTGCTTCTTGCACTCCCCACACATCATACAGgtaagtacttggttaagctgggatctcagggatgggtaaattgtcatggt Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaagctcaggtatttttattgatttgtttctttgcacagCTATTAAGGAAATGTCACATCAGTAACTACATTGTGACTCATTGTTTTTCAGAGCCTGGCAGCAAACCATTCTGTCCTAAGACAGTATGCTCTCACTTCCCACATGTTTTCTTGGTGGTGCGAGCATTTGCTTCTTGCACTCCCCACACATCATACAGgtaagtacttggttaagctgggatctcagggatgggtaaattgtcatggt #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGC-ATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag ccatggctgattgataaattgtgaggtttgctccatctgtttccttccagcaATGGGGGTTCTTCGCTCTGCTCTA---GTCCTAGGGTTAGGCTGCCTAGGTGGTGCCTTCACATGTCATCACAA-TTTCTCTAGCGAGCTCTTTCCCACTGTTATTaggtaagagctatgaagcctctggatcacagcactagacgattgcacataga Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag ccatggctgattgataaattgtgaggtttgctccatctgtttccttccagcaATGGGGGTTCTTCGCTCTGCTCTA---GTCCTAGGGTTAGGCTGCCTAGGTGGTGCCTTCACATGTCATCACAATTTCTCTAGCGAGCTCTTTCCCACTGTTATTaggtaagagctatgaagcctctggatcacagcactagacgattgcacataga Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ccatggctgattgataaattgtgaggtttgctccatctgtttccttccagCAATGGGGGTTCTTCGCTCTGCTCTA---GTCCTAGGGTTAGGCTGCCTAGGTGGTGCCTTCACATGTCATCACAATTTCTCTAGCGAGCTCTTTCCCACTGTTATTAGgtaagagctatgaagcctctggatcacagcactagacgattgcacataga Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ccatggctgattgataaattgtgaggtttgctccatctgtttccttccagCAATGGGGGTTCTTCGCTCTGCTCT---AGTCCTAGGGTTAGGCTGCCTAGGTGGTGCCTTCACATGTCATCACAATTTCTCTAGCGAGCTCTTTCCCACTGTTATTAGgtaagagctatgaagcctctggatcacagcactagacgattgcacataga Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTG-CATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ccatggctgattgataaattgtgaggtttgctccatctgtttccttccagCAATGGGGGTTCTTCGCTCTGCTCTA---GTCCTAGGGTTAGGCTGCCTAGGTGGTGCCTTCACATGTCATCACAAT-TTCTCTAGCGAGCTCTTTCCCACTGTTATTAGgtaagagctatgaagcctctggatcacagcactagacgattgcacataga Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ccatggctgattgataaattgtgaggtttgctccatctgtttccttccagCAATGGGGGTTCTTCGCTCTGCTCTA---GTCCTAGGGTTAGGCTGCCTAGGTGGTGCCTTCACATGTCATCACAATTTCTCTAGCGAGCTCTTTCCCACTGTTATTAGgtaagagctatgaagcctctggatcacagcactagacgattgcacataga Alignment from Exonerate_coding2genome ccatggctgattgataaattgtgaggtttgctccatctgtttccttccagcaatgggggttcttcgctctgctctagtcctagggttaggctgcctaggtggtgccttcacatgtcatcacaatttctctagcgagctctttcccactgttattaggtaagagctatgaagcctctggatcacagcactagacgattgcacataga Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG ccatggctgattgataaattgtgaggtttgctccatctgtttccttccagCAATGGGGGTTCTTCGCTCTGCTCTA---GTCCTAGGGTTAGGCTGCCTAGGTGGTGCCTTCACATGTCATCACAATTTCTCTAGCGAGCTCTTTCCCACTGTTATTAGgtaagagctatgaagcctctggatcacagcactagacgattgcacataga #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTC-CCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg ggtcaaggtcagggctattttaagtattgcctccctgaccttttccctaggTTTTCCATAGGCTTCACCTTTTATGGACTAGCTATTGAC---------CTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTCCCCAGTAAAGA-AGGTAGTTTGCTCCTGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTG------GATggtatgtctataatcgcttactgagtaaaaatgtttgacagaaaagagagg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg ggtcaaggtcagggctattttaagtattgcctccctgaccttttccctaggTTTTCCATAGGCTTCACCTTTTATGGACTAGCTATTGAC---------CTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTCCCCAGTAAAGAAGGTAGTTTGCTCCTGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTG------GATggtatgtctataatcgcttactgagtaaaaatgtttgacagaaaagagagg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ggtcaaggtcagggctattttaagtattgcctccctgaccttttccctagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCTATTGAC---------CTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTCCCCAGTAAAGAAGGTAGTTTGCTCCTGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTG------GATGgtatgtctataatcgcttactgagtaaaaatgtttgacagaaaagagagg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCG-GTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ggtcaaggtcagggctattttaagtattgcctccctgaccttttccctagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCTATTGA---------CCTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTCCCCAGTAAAGA-AGGTAGTTTGCTCCTGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGG---TTCCTGGACTATGTATACTTTCCAATGTATTGG------ATGgtatgtctataatcgcttactgagtaaaaatgtttgacagaaaagagagg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTT-CCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ggtcaaggtcagggctattttaagtattgcctccctgaccttttccctagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCTATTGA---------CCTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTCCCCAGTAAAGA-AGGTAGTTTGCTCCTGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGG---TTCCTGGACTATGTATACTTTCCAATGTATTGG------ATGgtatgtctataatcgcttactgagtaaaaatgtttgacagaaaagagagg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ggtcaaggtcagggctattttaagtattgcctccctgaccttttccctagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCTATTGAC---------CTTGGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTCCCCAGTAAAGAAGGTAGTTTGCTCCTGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTG------GATGgtatgtctataatcgcttactgagtaaaaatgtttgacagaaaagagagg Alignment from Exonerate_coding2genome ggtcaaggtcagggctattttaagtattgcctccctgaccttttccctaggttttccataggcttcaccttttatggactagctattgaccttgggagcaacatattcctcctccaatcgatcattgggattgtggatttccccagtaaagaaggtagtttgctcctgattacacatttgggccaacacctctgtcaggtcagttttttggttcctggactatgtatactttccaatgtattggatggtatgtctataatcgcttactgagtaaaaatgtttgacagaaaagagagg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG ggtcaaggtcagggctattttaagtattgcctccctgaccttttccctagGTTTTCCATAGGCTTCACCTTTTATGGACTAGCTATTGACCTT---------GGGAGCAACATATTCCTCCTCCAATCGATCATTGGGATTGTGGATTTCCCCAGTAAAGAAGGTAGTTTGCTCCTGATTACACATTTGGGCCAACACCTCTGTCAGGTCAGTTTTTTGGTT---CCTGGACTATGTATACTTTCCAATGTATTG------GATGgtatgtctataatcgcttactgagtaaaaatgtttgacagaaaagagagg #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTAT---------------CTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCC-CTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt cctgttatccagagaactattactgcgcatgttttgctttcctacctcaggTTCGGCTGCCGGAGAGTTCTGACCTGGAGCTACCTGACCTGGAGCTACCTTTTGGTGTCTGTTTCCGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACCTGCATTGTC-GTATTCTTTACTACTAGCCTCCTCCGTGGCTGGAATCATGATGAATACAGCTAGTCTTtgtatgacccgtggttgctggctgacagaacaatttatcacacctcactca Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTAT---------------CTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt cctgttatccagagaactattactgcgcatgttttgctttcctacctcaggTTCGGCTGCCGGAGAGTTCTGACCTGGAGCTACCTGACCTGGAGCTACCTTTTGGTGTCTGTTTCCGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACCTGCATTGTCGTATTCTTTACTACTAGCCTCCTCCGTGGCTGGAATCATGATGAATACAGCTAGTCTTtgtatgacccgtggttgctggctgacagaacaatttatcacacctcactca Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTG---------------CTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cctgttatccagagaactattactgcgcatgttttgctttcctacctcagGTTCGGCTGCCGGAGAGTTCTGACCTGGAGCTACCTGACCTGGAGCTACCTTTTGGTGTCTGTTTCCGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACCTGCATTGTCGTATTCTTTACTACTAGCCTCCTCCGTGGCTGGAATCATGATGAATACAGCTAGTCTTTgtatgacccgtggttgctggctgacagaacaatttatcacacctcactca Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCC-CCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cctgttatccagagaactattactgcgcatgttttgctttcctacctcaggttcggctgccggagAGTTCTGACCTGGAGCTACCTGACCTGGAGCTACCTTTTGGTGTCTGTTTCCGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACCTGCATTGTC-GTATTCTTTACTACTAGCCTCCTCCGTGGCTGGAATCATGATGAATACAGCTAGTCTTTgtatgacccgtggttgctggctgacagaacaatttatcacacctcactca Alignment from Pairagon GTTTGGGCGCAGAAGGGT---------------GCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCA------------------------------GTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cctgttatccagagaactattactgcgcatgttttgctttcctacctcagGTTCGGCTGCCGGAGAGTTCTGACCTGGAGCTACCTGACCTGGAGCTACCTTTTGGTGTCTGTTTCCGTCACAGGTGCTGCTTTCATGCCCACCTTCCCAC------------------------------CTGCATTGTCGTATTCTTTACTACTAGCCTCCTCCGTGGCTGGAATCATGATGAATACAGCTAGTCTTTgtatgacccgtggttgctggctgacagaacaatttatcacacctcactca Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cctgttatccagagaactattactgcgcatgttttgctttcctacctcaggttcggctgccggagAGTTCTGACCTGGAGCTACCTGACCTGGAGCTACCTTTTGGTGTCTGTTTCCGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACCTGCATTGTCGTATTCTTTACTACTAGCCTCCTCCGTGGCTGGAATCATGATGAATACAGCTAGTCTTTgtatgacccgtggttgctggctgacagaacaatttatcacacctcactca Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cctgttatccagagaactattactgcgcatgttttgctttcctacctcaggttcggctgccggagAGTTCTGACCTGGAGCTACCTGACCTGGAGCTACCTTTTGGTGTCTGTTTCCGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACCTGCATTGTCGTATTCTTTACTACTAGCCTCCTCCGTGGCTGGAATCATGATGAATACAGCTAGTCTTTgtatgacccgtggttgctggctgacagaacaatttatcacacctcactca Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTT---------------CTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cctgttatccagagaactattactgcgcatgttttgctttcctacctcagGTTCGGCTGCCGGAGAGTTCTGACCTGGAGCTACCTGACCTGGAGCTACCTTTTGGTGTCTGTTTCCGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACCTGCATTGTCGTATTCTTTACTACTAGCCTCCTCCGTGGCTGGAATCATGATGAATACAGCTAGTCTTTgtatgacccgtggttgctggctgacagaacaatttatcacacctcactca #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGT-TCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag ctttgacactattaaacccccctttaagagcatggttttccctcccgcagtgTTAGAATGGACAAGCCCGAAAACCCGATCATGGGTGACCACACTGTCAACAAGCCCCTCATC-TTTTGGAGGCCTCATTTTGGCTGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCTT---GTATCTGTGCCTATTTTCGTTTTGCTTGTACCAACAaggtaagtcacaagaaatcccatacaccatcctggtccattagatgacattt Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag ctttgacactattaaacccccctttaagagcatggttttccctcccgcagtgTTAGAATGGACAAGCCCGAAAACCCGATCATGGGTGACCACACTGTCAACAAGCCCCTCATCTTTTGGAGGCCTCATTTTGGCTGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCTT---GTATCTGTGCCTATTTTCGTTTTGCTTGTACCAACAaggtaagtcacaagaaatcccatacaccatcctggtccattagatgacattt Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG ctttgacactattaaacccccctttaagagcatggttttccctcccgcagTGTTAGAATGGACAAGCCCGAAAACCCGATCATGGGTGACCACACTGTCAACAAGCCCCTCATCTTTTGGAGGCCTCATTTTGGCTGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCTT---GTATCTGTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaaatcccatacaccatcctggtccattagatgacattt Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG ctttgacactattaaacccccctttaagagcatggttttccctcccgcagTGTTAGAATGGACAAGCCCGAAAACCCGATCATGGGTGACCACACTGTCAACAAGCCCCTCATCTTTTGGAGGCCTCATTTTGGCTGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCTTG---TATCTGTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaaatcccatacaccatcctggtccattagatgacattt Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAG-TTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG ctttgacactattaaacccccctttaagagcatggttttccctcccgcagTGTTAGAATGGACAAGCCCGAAAACCCGATCATGGGTGACCACACTGTCAACAAGCCCCTCATC-TTTTGGAGGCCTCATTTTGGCTGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCTTG---TATCTGTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaaatcccatacaccatcctggtccattagatgacattt Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG ctttgacactattaaacccccctttaagagcatggttttccctcccgcagTGTTAGAATGGACAAGCCCGAAAACCCGATCATGGGTGACCACACTGTCAACAAGCCCCTCATCTTTTGGAGGCCTCATTTTGGCTGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCTT---GTATCTGTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaaatcccatacaccatcctggtccattagatgacattt Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG ctttgacactattaaacccccctttaagagcatggttttccctcccgcagTGTTAGAATGGACAAGCCCGAAAACCCGATCATGGGTGACCACACTGTCAACAAGCCCCTCATCTTTTGGAGGCCTCATTTTGGCTGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCTT---GTATCTGTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaaatcccatacaccatcctggtccattagatgacattt Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG ctttgacactattaaacccccctttaagagcatggttttccctcccgcagTGTTAGAATGGACAAGCCCGAAAACCCGATCATGGGTGACCACACTGTCAACAAGCCCCTCATCTTTTGGAGGCCTCATTTTGGCTGGATTGGCATTTGCATTTCAAAATTGGCACCACCTCCAGCTT---GTATCTGTGCCTATTTTCGTTTTGCTTGTACCAACAAGgtaagtcacaagaaatcccatacaccatcctggtccattagatgacattt #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAG-GGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tcttccttagcaaattcacatgcaaaagtctcaaccgtttgtgtccccagaaATGGAGATCGTGAGGACAGCACTAGCTGTGTTTGGCATGCGGATGCT-ATCTGGTGCCTTTAGCTGCCTCTTCTTTTACACTAGTGAGCTCTACCCCAGAGTTCTCaggtacgtgttctttgggttagcagaccactaaaagagtggtatgcccaatt Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tcttccttagcaaattcacatgcaaaagtctcaaccgtttgtgtccccagaaATGGAGATCGTGAGGACAGCACTAGCTGTGTTTGGCATGCGGATGCTATCTGGTGCCTTTAGCTGCCTCTTCTTTTACACTAGTGAGCTCTACCCCAGAGTTCTCaggtacgtgttctttgggttagcagaccactaaaagagtggtatgcccaatt Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tcttccttagcaaattcacatgcaaaagtctcaaccgtttgtgtccccagAAATGGAGATCGTGAGGACAGCACTAGCTGTGTTTGGCATGCGGATGCTATCTGGTGCCTTTAGCTGCCTCTTCTTTTACACTAGTGAGCTCTACCCCAGAGTTCTCAGgtacgtgttctttgggttagcagaccactaaaagagtggtatgcccaatt Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAG-GGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tcttccttagcaaattcacatgcaaaagtctcaaccgtttgtgtccccagAAATGGAGATCGTGAGGACAGCACTAGCTGTGTTTGGCATGCGGATG-CTATCTGGTGCCTTTAGCTGCCTCTTCTTTTACACTAGTGAGCTCTACCCCAGAGTTCTCAGgtacgtgttctttgggttagcagaccactaaaagagtggtatgcccaatt Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAG-GGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tcttccttagcaaattcacatgcaaaagtctcaaccgtttgtgtccccagAAATGGAGATCGTGAGGACAGCACTAGCTGTGTTTGGCATGCGGATG-CTATCTGGTGCCTTTAGCTGCCTCTTCTTTTACACTAGTGAGCTCTACCCCAGAGTTCTCAGgtacgtgttctttgggttagcagaccactaaaagagtggtatgcccaatt Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tcttccttagcaaattcacatgcaaaagtctcaaccgtttgtgtccccagAAATGGAGATCGTGAGGACAGCACTAGCTGTGTTTGGCATGCGGATGCTATCTGGTGCCTTTAGCTGCCTCTTCTTTTACACTAGTGAGCTCTACCCCAGAGTTCTCAGgtacgtgttctttgggttagcagaccactaaaagagtggtatgcccaatt Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tcttccttagcaaattcacatgcaaaagtctcaaccgtttgtgtccccagAAATGGAGATCGTGAGGACAGCACTAGCTGTGTTTGGCATGCGGATGCTATCTGGTGCCTTTAGCTGCCTCTTCTTTTACACTAGTGAGCTCTACCCCAGAGTTCTCAGgtacgtgttctttgggttagcagaccactaaaagagtggtatgcccaatt Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tcttccttagcaaattcacatgcaaaagtctcaaccgtttgtgtccccagAAATGGAGATCGTGAGGACAGCACTAGCTGTGTTTGGCATGCGGATGCTATCTGGTGCCTTTAGCTGCCTCTTCTTTTACACTAGTGAGCTCTACCCCAGAGTTCTCAGgtacgtgttctttgggttagcagaccactaaaagagtggtatgcccaatt #### Slc25a28_ID8782_3 --> 2 - 1 Original Alignment gtGCAGCCGGATGTGTGGCGACATTA-CTTCATGATGCAGCCATGAATCCAGCGGAAg ctcagtgtttagacaacatggtatctggcttgattctaaatgtcttttaggtGCAGCTGGATGCGTAGCAACACTGCCTGCATG-TGCTGCAATGAATCCAGCAGAAggtatggctctacttgctatgttaagcttttggcctcatggggtcacagct Alignment from CESAR gtGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAg ctcagtgtttagacaacatggtatctggcttgattctaaatgtcttttaggtGCAGCTGGATGCGTAGCAACACTGCCTGCATGTGCTGCAATGAATCCAGCAGAAggtatggctctacttgctatgttaagcttttggcctcatggggtcacagct Alignment from Spaln_aa2Genome GTGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAG ctcagtgtttagacaacatggtatctggcttgattctaaatgtcttttagGTGCAGCTGGATGCGTAGCAACACTGCCTGCATGTGCTGCAATGAATCCAGCAGAAGgtatggctctacttgctatgttaagcttttggcctcatggggtcacagct Alignment from Spaln_nt2Genome GTGCAGCCGGATGTGTGGCGACATTACTT-CATGATGCAGCCATGAATCCAGCGGAAG ctcagtgtttagacaacatggtatctggcttgattctaaatgtcttttagGTGCAGCTGGATGCGTAGCAACACTGCCTGCATG-TGCTGCAATGAATCCAGCAGAAGgtatggctctacttgctatgttaagcttttggcctcatggggtcacagct Alignment from Pairagon GTGCAGCCGGATGTGTGGCGACATTACTT-CATGATGCAGCCATGAATCCAGCGGAAG ctcagtgtttagacaacatggtatctggcttgattctaaatgtcttttagGTGCAGCTGGATGCGTAGCAACACTGCCTGCATG-TGCTGCAATGAATCCAGCAGAAGgtatggctctacttgctatgttaagcttttggcctcatggggtcacagct Alignment from Exonerate_protein2genome GTGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAG ctcagtgtttagacaacatggtatctggcttgattctaaatgtcttttagGTGCAGCTGGATGCGTAGCAACACTGCCTGCATGTGCTGCAATGAATCCAGCAGAAGgtatggctctacttgctatgttaagcttttggcctcatggggtcacagct Alignment from Exonerate_coding2genome AATCCAG CTCAGTGtttagacaacatggtatctggcttgattctaaatgtcttttaggtgcagctggatgcgtagcaacactgcctgcatgtgctgcaatgaatccagcagaaggtatggctctacttgctatgttaagcttttggcctcatggggtcacagct Alignment from GeneWise GTGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAG ctcagtgtttagacaacatggtatctggcttgattctaaatgtcttttagGTGCAGCTGGATGCGTAGCAACACTGCCTGCATGTGCTGCAATGAATCCAGCAGAAGgtatggctctacttgctatgttaagcttttggcctcatggggtcacagct #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTG-GGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacctgacactgcattgctccatagggGCTGTGGGACTGGTTCTGCGGGCACC-ATTTGATACTGTAAAGgtaagtacctgctgggatgaaggcaaatacactgtgatgaaggcaaatat Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacctgacactgcattgctccatagggGCTGTGGGACTGGTTCTGCGGGCACCATTTGATACTGTAAAGgtaagtacctgctgggatgaaggcaaatacactgtgatgaaggcaaatat Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacctgacactgcattgctccatagGGGCTGTGGGACTGGTTCTGCGGGCACCATTTGATACTGTAAAGgtaagtacctgctgggatgaaggcaaatacactgtgatgaaggcaaatat Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacctgacactgcattgctccatagGGGCTGTGGGACTGGTTCTGCGGGCACCATTTGATACTGTAAAGgtaagtacctgctgggatgaaggcaaatacactgtgatgaaggcaaatat Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacctgacactgcattgctccatagGGGCTGTGGGACTGGTTCTGCGGGCACCATTTGATACTGTAAAGgtaagtacctgctgggatgaaggcaaatacactgtgatgaaggcaaatat Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG gaatcatgtccagggggtctggctagacctgacactgcattgctccatagGGGCTGTGGGACTGGTTCTGCGGGCACCATTTGATACTGTAAAGgtaagtacctgctgggatgaaggcaaatacactgtgatgaaggcaaatat Alignment from Exonerate_coding2genome gaatcatgtccagggggtctggctagacctgacactgcattgctccataggggctgtgggactggttctgcgggcaccatttgatactgtaaaggtaagtacctgctgggatgaaggcaaatacactgtgatgaaggcaaatat Alignment from GeneWise gaatcatgtccagggggtctggctagacctgacactgcattgctccataggggctgtgggactggttctgcgggcaccatttgatactgtaaaggtaagtacctgctgggatgaaggcaaatacactgtgatgaaggcaaatat #### Slc25a45_ID1294_5 --> 0 - 1 Original Alignment GCCTACTGCCTG-GCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCa actggtagagttgagttcaggacatcaccatgtgttttcttaccccctagGCCTACTGTCTTCGCACCCT-TGATCTCATACGGGTGCATCTACAAAATCAGACAGAGTCGAGGCTTCAGATATCTAGCTCAATGCCCCGGTATCGAGGTCCAGTCCACTGTGCAGCTTCAGTCCTGAGGGAGGAAGGACCCCAAGGACTGCTCAGGGGATCTTGGGCTTTGGTCTTGAGAGACACCCTTACATTGGGAATGTACTTTGTAGCCTATAAAGGGCTATGCCGCCAGTATACCCTAGGGGGACAAAACCCGagtagaatagttgtaacccaagatcttcggctgcattgctgtcgttccctt Alignment from CESAR GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCa actggtagagttgagttcaggacatcaccatgtgttttcttaccccctagGCCTACTGTCTTCGCACCCTTGATCTCATACGGGTGCATCTACAAAATCAGACAGAGTCGAGGCTTCAGATATCTAGCTCAATGCCCCGGTATCGAGGTCCAGTCCACTGTGCAGCTTCAGTCCTGAGGGAGGAAGGACCCCAAGGACTGCTCAGGGGATCTTGGGCTTTGGTCTTGAGAGACACCCTTACATTGGGAATGTACTTTGTAGCCTATAAAGGGCTATGCCGCCAGTATACCCTAGGGGGACAAAACCCGagtagaatagttgtaacccaagatcttcggctgcattgctgtcgttccctt Alignment from Spaln_aa2Genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA actggtagagttgagttcaggacatcaccatgtgttttcttaccccctagGCCTACTGTCTTCGCACCCTTGATCTCATACGGGTGCATCTACAAAATCAGACAGAGTCGAGGCTTCAGATATCTAGCTCAATGCCCCGGTATCGAGGTCCAGTCCACTGTGCAGCTTCAGTCCTGAGGGAGGAAGGACCCCAAGGACTGCTCAGGGGATCTTGGGCTTTGGTCTTGAGAGACACCCTTACATTGGGAATGTACTTTGTAGCCTATAAAGGGCTATGCCGCCAGTATACCCTAGGGGGACAAAACCCGAgtagaatagttgtaacccaagatcttcggctgcattgctgtcgttccctt Alignment from Spaln_nt2Genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA actggtagagttgagttcaggacatcaccatgtgttttcttaccccctagGCCTACTGTCTTCGCACCCTTGATCTCATACGGGTGCATCTACAAAATCAGACAGAGTCGAGGCTTCAGATATCTAGCTCAATGCCCCGGTATCGAGGTCCAGTCCACTGTGCAGCTTCAGTCCTGAGGGAGGAAGGACCCCAAGGACTGCTCAGGGGATCTTGGGCTTTGGTCTTGAGAGACACCCTTACATTGGGAATGTACTTTGTAGCCTATAAAGGGCTATGCCGCCAGTATACCCTAGGGGGACAAAACCCGAgtagaatagttgtaacccaagatcttcggctgcattgctgtcgttccctt Alignment from Pairagon GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA actggtagagttgagttcaggacatcaccatgtgttttcttaccccctagGCCTACTGTCTTCGCACCCTTGATCTCATACGGGTGCATCTACAAAATCAGACAGAGTCGAGGCTTCAGATATCTAGCTCAATGCCCCGGTATCGAGGTCCAGTCCACTGTGCAGCTTCAGTCCTGAGGGAGGAAGGACCCCAAGGACTGCTCAGGGGATCTTGGGCTTTGGTCTTGAGAGACACCCTTACATTGGGAATGTACTTTGTAGCCTATAAAGGGCTATGCCGCCAGTATACCCTAGGGGGACAAAACCCGAgtagaatagttgtaacccaagatcttcggctgcattgctgtcgttccctt Alignment from Exonerate_protein2genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA actggtagagttgagttcaggacatcaccatgtgttttcttaccccctagGCCTACTGTCTTCGCACCCTTGATCTCATACGGGTGCATCTACAAAATCAGACAGAGTCGAGGCTTCAGATATCTAGCTCAATGCCCCGGTATCGAGGTCCAGTCCACTGTGCAGCTTCAGTCCTGAGGGAGGAAGGACCCCAAGGACTGCTCAGGGGATCTTGGGCTTTGGTCTTGAGAGACACCCTTACATTGGGAATGTACTTTGTAGCCTATAAAGGGCTATGCCGCCAGTATACCCTAGGGGGACAAAACCCGAgtagaatagttgtaacccaagatcttcggctgcattgctgtcgttccctt Alignment from Exonerate_coding2genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA actggtagagttgagttcaggacatcaccatgtgttttcttaccccctagGCCTACTGTCTTCGCACCCTTGATCTCATACGGGTGCATCTACAAAATCAGACAGAGTCGAGGCTTCAGATATCTAGCTCAATGCCCCGGTATCGAGGTCCAGTCCACTGTGCAGCTTCAGTCCTGAGGGAGGAAGGACCCCAAGGACTGCTCAGGGGATCTTGGGCTTTGGTCTTGAGAGACACCCTTACATTGGGAATGTACTTTGTAGCCTATAAAGGGCTATGCCGCCAGTATACCCTAGGGGGACAAAACCCGAgtagaatagttgtaacccaagatcttcggctgcattgctgtcgttccctt Alignment from GeneWise GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA actggtagagttgagttcaggacatcaccatgtgttttcttaccccctagGCCTACTGTCTTCGCACCCTTGATCTCATACGGGTGCATCTACAAAATCAGACAGAGTCGAGGCTTCAGATATCTAGCTCAATGCCCCGGTATCGAGGTCCAGTCCACTGTGCAGCTTCAGTCCTGAGGGAGGAAGGACCCCAAGGACTGCTCAGGGGATCTTGGGCTTTGGTCTTGAGAGACACCCTTACATTGGGAATGTACTTTGTAGCCTATAAAGGGCTATGCCGCCAGTATACCCTAGGGGGACAAAACCCGAgtagaatagttgtaacccaagatcttcggctgcattgctgtcgttccctt #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTG-GGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagcTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGCGGCACCC-TCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from CESAR cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagcTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGCGGCACCCTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGCGGCACCCTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Spaln_nt2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGCGGCACCCTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Pairagon CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGCGGCACCCTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGCGGCACCCTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Exonerate_coding2genome GACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctcttTCCAGCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGCGGCACCCTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from GeneWise GCGCGGGGAAACGCCCCTCGGGACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcaGCTACTCTCCCCTCTGCTCTTTCCAGCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGCGGCACCCTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga #### Slc29a2_ID789_3 --> 0 - 2 Original Alignment TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTC-AACTCCTTCCTGTATCAG---tg tgggggttactcttgagaggatccctgtattgtttgtttttatttaccagTATCTCCGGGGAGAATTGGCGGGTACTAACAGCAGTGCTGGCACCATCAGCAAAAACCACACTAGTCCTACTGATGTATCAAATATCAACAATTGGGTGACGCTGCTATCACAATTGCCTCGATTATTGTTCACACTGCTCCAACT-CTTCCTGTACCAGTGGtggtaagtaccatatagagtcaatctctcaactattatcatacacctcttgc Alignment from CESAR TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAG---tg tgggggttactcttgagaggatccctgtattgtttgtttttatttaccagTATCTCCGGGGAGAATTGGCGGGTACTAACAGCAGTGCTGGCACCATCAGCAAAAACCACACTAGTCCTACTGATGTATCAAATATCAACAATTGGGTGACGCTGCTATCACAATTGCCTCGATTATTGTTCACACTGCTCCAACTCTTCCTGTACCAGTGGtggtaagtaccatatagagtcaatctctcaactattatcatacacctcttgc Alignment from Spaln_aa2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaggatccctgtattgtttgtttttatttaccagTATCTCCGGGGAGAATTGGCGGGTACTAACAGCAGTGCTGGCACCATCAGCAAAAACCACACTAGTCCTACTGATGTATCAAATATCAACAATTGGGTGACGCTGCTATCACAATTGCCTCGATTATTGTTCACACTGCTCCAACTCTTCCTGTACCAGTGgtggtaagtaccatatagagtcaatctctcaactattatcatacacctcttgc Alignment from Spaln_nt2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG--- tgggggttactcttgagaggatccctgtattgtttgtttttatttaccagTATCTCCGGGGAGAATTGGCGGGTACTAACAGCAGTGCTGGCACCATCAGCAAAAACCACACTAGTCCTACTGATGTATCAAATATCAACAATTGGGTGACGCTGCTATCACAATTGCCTCGATTATTGTTCACACTGCTCCAACTCTTCCTGTACCAGTGGTGgtaagtaccatatagagtcaatctctcaactattatcatacacctcttgc Alignment from Pairagon TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaggatccctgtattgtttgtttttatttaccagTATCTCCGGGGAGAATTGGCGGGTACTAACAGCAGTGCTGGCACCATCAGCAAAAACCACACTAGTCCTACTGATGTATCAAATATCAACAATTGGGTGACGCTGCTATCACAATTGCCTCGATTATTGTTCACACTGCTCCAACTCTTCCTGTACCAGTGgtggtaagtaccatatagagtcaatctctcaactattatcatacacctcttgc Alignment from Exonerate_protein2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaggatccctgtattgtttgtttttatttaccagTATCTCCGGGGAGAATTGGCGGGTACTAACAGCAGTGCTGGCACCATCAGCAAAAACCACACTAGTCCTACTGATGTATCAAATATCAACAATTGGGTGACGCTGCTATCACAATTGCCTCGATTATTGTTCACACTGCTCCAACTCTTCCTGTACCAGTGgtggtaagtaccatatagagtcaatctctcaactattatcatacacctcttgc Alignment from Exonerate_coding2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaggatccctgtattgtttgtttttatttaccagTATCTCCGGGGAGAATTGGCGGGTACTAACAGCAGTGCTGGCACCATCAGCAAAAACCACACTAGTCCTACTGATGTATCAAATATCAACAATTGGGTGACGCTGCTATCACAATTGCCTCGATTATTGTTCACACTGCTCCAACTCTTCCTGTACCAGTGgtggtaagtaccatatagagtcaatctctcaactattatcatacacctcttgc Alignment from GeneWise TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttactcttgagaggatccctgtattgtttgtttttatttaccagTATCTCCGGGGAGAATTGGCGGGTACTAACAGCAGTGCTGGCACCATCAGCAAAAACCACACTAGTCCTACTGATGTATCAAATATCAACAATTGGGTGACGCTGCTATCACAATTGCCTCGATTATTGTTCACACTGCTCCAACTCTTCCTGTACCAGTGgtggtaagtaccatatagagtcaatctctcaactattatcatacacctcttgc #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGT-TACCTCAGCCTGCCTCATCTG acaaacgaagctggaatgggggacatttcagttctgttccttccctacaggtGATGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTCTACCTTA-CTTGCCACACCTGgtaaattgcttcataatttatgtgatgcatggaccgcttaaatataaaac Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacgaagctggaatgggggacatttcagttctgttccttccctacaggtGATGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTCTACCTTACTTGCCACACCTGgtaaattgcttcataatttatgtgatgcatggaccgcttaaatataaaac Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacgaagctggaatgggggacatttcagttctgttccttccctacagGTGATGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTCTACCTTACTTGCCACACCTGgtaaattgcttcataatttatgtgatgcatggaccgcttaaatataaaac Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGT-TACCTCAGCCTGCCTCATCTG acaaacgaagctggaatgggggacatttcagttctgttccttccctacagGTGATGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTCTACCTTA-CTTGCCACACCTGgtaaattgcttcataatttatgtgatgcatggaccgcttaaatataaaac Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGT-TACCTCAGCCTGCCTCATCTG acaaacgaagctggaatgggggacatttcagttctgttccttccctacagGTGATGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTCTACCTTA-CTTGCCACACCTGgtaaattgcttcataatttatgtgatgcatggaccgcttaaatataaaac Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacgaagctggaatgggggacatttcagttctgttccttccctacagGTGATGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTCTACCTTACTTGCCACACCTGgtaaattgcttcataatttatgtgatgcatggaccgcttaaatataaaac Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacgaagctggaatgggggacatttcagttctgttccttccctacagGTGATGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTCTACCTTACTTGCCACACCTGgtaaattgcttcataatttatgtgatgcatggaccgcttaaatataaaac Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacgaagctggaatgggggacatttcagttctgttccttccctacagGTGATGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTCTACCTTACTTGCCACACCTGgtaaattgcttcataatttatgtgatgcatggaccgcttaaatataaaac #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGC-CCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatggtagtttttagagccataatgttcctgcgctctccacttctcagatGCAAAGAATGGACTACCAGTCAGCCCACAGCAGGCAAGCCCCAACTC-TGAGCTGGACCCTGAAACAGAGCCAGACCCAGAGCAGCCACAAAAGCCCGGTAAACCTTCAGTCTTTGTTGTTCTCAAGAAAgtgagttttaatgtacagacagggctggaagcagtgggttgtttgaccta Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatggtagtttttagagccataatgttcctgcgctctccacttctcagatGCAAAGAATGGACTACCAGTCAGCCCACAGCAGGCAAGCCCCAACTCTGAGCTGGACCCTGAAACAGAGCCAGACCCAGAGCAGCCACAAAAGCCCGGTAAACCTTCAGTCTTTGTTGTTCTCAAGAAAgtgagttttaatgtacagacagggctggaagcagtgggttgtttgaccta Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatggtagtttttagagccataatgttcctgcgctctccacttctcagATGCAAAGAATGGACTACCAGTCAGCCCACAGCAGGCAAGCCCCAACTCTGAGCTGGACCCTGAAACAGAGCCAGACCCAGAGCAGCCACAAAAGCCCGGTAAACCTTCAGTCTTTGTTGTTCTCAAGAAAgtgagttttaatgtacagacagggctggaagcagtgggttgtttgaccta Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCC-AACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatggtagtttttagagccataatgttcctgcgctctccacttctcagATGCAAAGAATGGACTACCAGTCAGCCCACAGCAGGCAAGCCCCAACTCT-GAGCTGGACCCTGAAACAGAGCCAGACCCAGAGCAGCCACAAAAGCCCGGTAAACCTTCAGTCTTTGTTGTTCTCAAGAAAgtgagttttaatgtacagacagggctggaagcagtgggttgtttgaccta Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAG-CCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatggtagtttttagagccataatgttcctgcgctctccacttctcagATGCAAAGAATGGACTACCAGTCAGCCCACAGCAGGCAAGCCCCAACTCT-GAGCTGGACCCTGAAACAGAGCCAGACCCAGAGCAGCCACAAAAGCCCGGTAAACCTTCAGTCTTTGTTGTTCTCAAGAAAgtgagttttaatgtacagacagggctggaagcagtgggttgtttgaccta Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatggtagtttttagagccataatgttcctgcgctctccacttctcagATGCAAAGAATGGACTACCAGTCAGCCCACAGCAGGCAAGCCCCAACTCTGAGCTGGACCCTGAAACAGAGCCAGACCCAGAGCAGCCACAAAAGCCCGGTAAACCTTCAGTCTTTGTTGTTCTCAAGAAAgtgagttttaatgtacagacagggctggaagcagtgggttgtttgaccta Alignment from Exonerate_coding2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatggtagtttttagagccataatgttcctgcgctctccacttctcagATGCAAAGAATGGACTACCAGTCAGCCCACAGCAGGCAAGCCCCAACTCTGAGCTGGACCCTGAAACAGAGCCAGACCCAGAGCAGCCACAAAAGCCCGGTAAACCTTCAGTCTTTGTTGTTCTCAAGAAAgtgagttttaatgtacagacagggctggaagcagtgggttgtttgaccta Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatggtagtttttagagccataatgttcctgcgctctccacttctcagATGCAAAGAATGGACTACCAGTCAGCCCACAGCAGGCAAGCCCCAACTCTGAGCTGGACCCTGAAACAGAGCCAGACCCAGAGCAGCCACAAAAGCCCGGTAAACCTTCAGTCTTTGTTGTTCTCAAGAAAgtgagttttaatgtacagacagggctggaagcagtgggttgtttgaccta #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTG-TGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg ttgacctaaatactgactatccagaggcttttccctttatcctttcacagATCTGGCTGACAGCGCTGCTGCCTTG-GTTAGTCTTCACAGTTACCCTCTCTGTTTTTCCTGCAATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtgtgtatttgccatactccacagtatggaccagaagagccattaaaagc Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg ttgacctaaatactgactatccagaggcttttccctttatcctttcacagATCTGGCTGACAGCGCTGCTGCCTTGGTTAGTCTTCACAGTTACCCTCTCTGTTTTTCCTGCAATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtgtgtatttgccatactccacagtatggaccagaagagccatatgctgc Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG ttgacctaaatactgactatccagaggcttttccctttatcctttcacagATCTGGCTGACAGCGCTGCTGCCTTGGTTAGTCTTCACAGTTACCCTCTCTGTTTTTCCTGCAATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgtgtatttgccatactccacagtatggaccagaagagccattaaaagc Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG ttgacctaaatactgactatccagaggcttttccctttatcctttcacagATCTGGCTGACAGCGCTGCTGCCTTGGTTAGTCTTCACAGTTACCCTCTCTGTTTTTCCTGCAATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgtgtatttgccatactccacagtatggaccagaagagccattaaaagc Alignment from Pairagon ATCTGGCTGACGGCGCTG-TGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG ttgacctaaatactgactatccagaggcttttccctttatcctttcacagATCTGGCTGACAGCGCTGCTGCCTTG-GTTAGTCTTCACAGTTACCCTCTCTGTTTTTCCTGCAATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgtgtatttgccatactccacagtatggaccagaagagccattaaaagc Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG ttgacctaaatactgactatccagaggcttttccctttatcctttcacagATCTGGCTGACAGCGCTGCTGCCTTGGTTAGTCTTCACAGTTACCCTCTCTGTTTTTCCTGCAATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgtgtatttgccatactccacagtatggaccagaagagccattaaaagc Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG ttgacctaaatactgactatccagaggcttttccctttatcctttcacagATCTGGCTGACAGCGCTGCTGCCTTGGTTAGTCTTCACAGTTACCCTCTCTGTTTTTCCTGCAATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgtgtatttgccatactccacagtatggaccagaagagccattaaaagc Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG ttgacctaaatactgactatccagaggcttttccctttatcctttcacagATCTGGCTGACAGCGCTGCTGCCTTGGTTAGTCTTCACAGTTACCCTCTCTGTTTTTCCTGCAATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgtgtatttgccatactccacagtatggaccagaagagccattaaaagc #### Slit1_ID8208_30 --> 2 - 2 Original Alignment gaAGGGCCTGTGAGCAGCTGGTGGAC-TTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCag ccaaatgggtaacaataattggattgctctttgtctggcttcttctacaggaCAC---TGTGAACAGCTAGTTGACCTTTTGCT-CCCAGACATGAACCCGTGTCAACATGAGGCCCAATGTGTAAGCACCTTAGACGGCCCCaggtaactagtactaccactgttgatcatcatcaggtccctgccgggcagct Alignment from CESAR gaAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCag ccaaatgggtaacaataattggattgctctttgtctggcttcttctacaggaCAC---TGTGAACAGCTAGTTGACCTTTTGCTCCCAGACATGAACCCGTGTCAACATGAGGCCCAATGTGTAAGCACCTTAGACGGCCCCaggtaactagtactaccactgttgatcatcatcaggtccctgccgggcagct Alignment from Spaln_aa2Genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG ccaaatgggtaacaataattggattgctctttgtctggcttcttctacagGACAC---TGTGAACAGCTAGTTGACCTTTTGCTCCCAGACATGAACCCGTGTCAACATGAGGCCCAATGTGTAAGCACCTTAGACGGCCCCAGgtaactagtactaccactgttgatcatcatcaggtccctgccgggcagct Alignment from Spaln_nt2Genome GAAGGGCCTGTGAGCAGCTGGTGGAC-TTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG ccaaatgggtaacaataattggattgctctttgtctggcttcttctacagGA---CACTGTGAACAGCTAGTTGACCTTTTGCT-CCCAGACATGAACCCGTGTCAACATGAGGCCCAATGTGTAAGCACCTTAGACGGCCCCAGgtaactagtactaccactgttgatcatcatcaggtccctgccgggcagct Alignment from Pairagon ------------------------------------------------------CTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG CCAAATGGGTAACAATAATTGGATTGCTCTTTGTCTGGCTTCTTCTACAGGACACTGTGAACAGCTAGTTGACCTTTTGCTCCCAGACATGAACCCGTGTCAACATGAGGCCCAATGTGTAAGCACCTTAGACGGCCCCAGgtaactagtactaccactgttgatcatcatcaggtccctgccgggcagct Alignment from Exonerate_protein2genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG ccaaatgggtaacaataattggattgctctttgtctggcttcttctacagGACAC---TGTGAACAGCTAGTTGACCTTTTGCTCCCAGACATGAACCCGTGTCAACATGAGGCCCAATGTGTAAGCACCTTAGACGGCCCCAGgtaactagtactaccactgttgatcatcatcaggtccctgccgggcagct Alignment from Exonerate_coding2genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG ccaaatgggtaacaataattggattgctctttgtctggcttcttctacagGACAC---TGTGAACAGCTAGTTGACCTTTTGCTCCCAGACATGAACCCGTGTCAACATGAGGCCCAATGTGTAAGCACCTTAGACGGCCCCAGgtaactagtactaccactgttgatcatcatcaggtccctgccgggcagct Alignment from GeneWise GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCC-- ccaaatgggtaacaataattggattgctctttgtctggcttcttctacagGACAC---TGTGAACAGCTAGTTGACCTTTTGCTCCCAGACATGAACCCGTGTCAACATGAGGCCCAATGTGTAAGCACCTTAGACGGCCCCAGgtaactagtactaccactgttgatcatcatcaggtccctgccgggcagct #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATCACC-ACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt caggtgtgattagctctcttggtccattgcttttactttttcttttccagtCCATTCAATAATAATAACATCAGTCGCTA-CCCC------CGTTTCAATCATATCCCTAAGCTCCACACTttgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt caggtgtgattagctctcttggtccattgcttttactttttcttttccagtCCATTCAATAATAATAACATCAGTCGCTACCCC------CGTTTCAATCATATCCCTAAGCTCCACACTttgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccagTCCATTCAATAATAATAACATCAGTCGCTACCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccagTCCATTCAATAATAATAACATCAGTCGCTACC------CCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCA-------------------------------GTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccag-------------------------------------TCCATTCAATAATAATAACATCAGTCGCTACCCCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccagTCCATTCAATAATAATAACATCAGTCGCTACCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Exonerate_coding2genome caggtgtgattagctctcttggtccattgcttttactttttcttttccagtccattcaataataataacatcagtcgctacccccgtttcaatcatatccctaagctccacactttgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccagTCCATTCAATAATAATAACATCAGTCGCTACCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat #### Slit1_ID8233_6 --> 1 - 2 Original Alignment aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCC-CTACGGGGACTGGAGGTTct tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagaCAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCCTAC-TGGATTGGATGTTctgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from CESAR aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagaCAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCCTACTGGATTGGATGTTctgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Spaln_aa2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCCTACTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Spaln_nt2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCCTACTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Pairagon ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCCTACTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Exonerate_protein2genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCCTACTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Exonerate_coding2genome tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagacagctggacaagaaccgcattagctgcatcaaggaaggggccctccgtgcccctactggattggatgttctgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from GeneWise ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCCTACTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg #### Slk_ID10250_6 --> 1 - 2 Original Alignment gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGAT-GTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg acttggtaactattctcaatacctccccactatttgcatctttttgacaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATCGTTTGGTCTC-GGGGATAACTTTAATTGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGctgtaaagtgatgctgttgaatgaaacctgagactggttttccaggtgccta Alignment from CESAR gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg acttggtaactattctcaatacctccccactatttgcatctttttgacaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATCGTTTGGTCTCGGGGATAACTTTAATTGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGctgtaaagtgatgctgttgaatgaaacctgagactggttttccaggtgccta Alignment from Spaln_aa2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattctcaatacctccccactatttgcatctttttgacagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATCGTTTGGTCTCGGGGATAACTTTAATTGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtaaagtgatgctgttgaatgaaacctgagactggttttccaggtgccta Alignment from Spaln_nt2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattctcaatacctccccactatttgcatctttttgacagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATCGTTTGGTCTCGGGGATAACTTTAATTGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtaaagtgatgctgttgaatgaaacctgagactggttttccaggtgccta Alignment from Pairagon GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGAT-GTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattctcaatacctccccactatttgcatctttttgacagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATCGTTTGGTCTC-GGGGATAACTTTAATTGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtaaagtgatgctgttgaatgaaacctgagactggttttccaggtgccta Alignment from Exonerate_protein2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattctcaatacctccccactatttgcatctttttgacagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATCGTTTGGTCTCGGGGATAACTTTAATTGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtaaagtgatgctgttgaatgaaacctgagactggttttccaggtgccta Alignment from Exonerate_coding2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattctcaatacctccccactatttgcatctttttgacagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATCGTTTGGTCTCGGGGATAACTTTAATTGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtaaagtgatgctgttgaatgaaacctgagactggttttccaggtgccta Alignment from GeneWise GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattctcaatacctccccactatttgcatctttttgacagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATCGTTTGGTCTCGGGGATAACTTTAATTGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtaaagtgatgctgttgaatgaaacctgagactggttttccaggtgccta #### Slk_ID10265_17 --> 0 - 0 Original Alignment TTTGCTGCACAAGAAGAA-AAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG agagggaagatatatctctatctctgcacttcacacccttctgtccccagTTTGCGGCACAAGACAAACAAGCGAA-AAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTGCATCAGCTACCAgtaatgtttctcaaactggggtgacaggaagcatgtgtattgtttaagac Alignment from CESAR TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG agagggaagatatatctctatctctgcacttcacacccttctgtccccagTTTGCGGCACAAGACAAACAAGCGAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTGCATCAGCTACCAgtaatgtttctcaaactggggtgacaggaagcatgtgtattgtttaagac Alignment from Spaln_aa2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG agagggaagatatatctctatctctgcacttcacacccttctgtccccagTTTGCGGCACAAGACAAACAAGCGAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTGCATCAGCTACCAgtaatgtttctcaaactggggtgacaggaagcatgtgtattgtttaagac Alignment from Spaln_nt2Genome TTTGCTGCACAAGAAGAA-AAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG agagggaagatatatctctatctctgcacttcacacccttctgtccccagTTTGCGGCACAAGACAAACAAGCGA-AAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTGCATCAGCTACCAgtaatgtttctcaaactggggtgacaggaagcatgtgtattgtttaagac Alignment from Pairagon TTTGCTGCACAAGA--------AGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG agagggaagatatatctctatctctgcacttcacacccttctgtccccagTTTGCGGCACAAGACAAACAAGCGAAA--------AAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTGCATCAGCTACCAgtaatgtttctcaaactggggtgacaggaagcatgtgtattgtttaagac Alignment from Exonerate_protein2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG agagggaagatatatctctatctctgcacttcacacccttctgtccccagTTTGCGGCACAAGACAAACAAGCGAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTGCATCAGCTACCAgtaatgtttctcaaactggggtgacaggaagcatgtgtattgtttaagac Alignment from Exonerate_coding2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG agagggaagatatatctctatctctgcacttcacacccttctgtccccagTTTGCGGCACAAGACAAACAAGCGAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTGCATCAGCTACCAgtaatgtttctcaaactggggtgacaggaagcatgtgtattgtttaagac Alignment from GeneWise TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG agagggaagatatatctctatctctgcacttcacacccttctgtccccagTTTGCGGCACAAGACAAACAAGCGAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTGCATCAGCTACCAgtaatgtttctcaaactggggtgacaggaagcatgtgtattgtttaagac #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAACAGAGTTATTG-TGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAACAGAGTTATTGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAACAGAGTTATTGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAACAGAGTTATTGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAACAGAGTTATT-GTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAACAGAGTTATTGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Exonerate_coding2genome GCTTTTGTGGAAATCATTTTTGACAATTCGGACAACC-----GGTTACCAATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATG AATAATCACCCAGAGACTGGGGGTTGTTAACTTTGGTTTTAATCTTACAGATTGATAAAGAGGAAGTTTCACTTCAACAGAGTTATTGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGgtcacgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAACAGAGTTATTGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAA-ACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gagataatgtccaagagcactttgcatgatttctgaaaatctattttaagGATACCGAACGCCAGGTCCGAGAACTGAAACACAAAAA-TTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTGAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGAgtaagtcatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gagataatgtccaagagcactttgcatgatttctgaaaatctattttaagGATACCGAACGCCAGGTCCGAGAACTGAAACACAAAAATTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTGAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGAgtaagtcatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gagataatgtccaagagcactttgcatgatttctgaaaatctattttaagGATACCGAACGCCAGGTCCGAGAACTGAAACACAAAAATTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTGAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGAgtaagtcatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gagataatgtccaagagcactttgcatgatttctgaaaatctattttaagGATACCGAACGCCAGGTCCGAGAACTGAAACACAAAAATTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTGAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGAgtaagtcatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gagataatgtccaagagcactttgcatgatttctgaaaatctattttaagGATACCGAACGCCAGGTCCGAGAACTGAAACACAAAAATTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTGAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGAgtaagtcatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gagataatgtccaagagcactttgcatgatttctgaaaatctattttaagGATACCGAACGCCAGGTCCGAGAACTGAAACACAAAAATTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTGAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGAgtaagtcatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gagataatgtccaagagcactttgcatgatttctgaaaatctattttaagGATACCGAACGCCAGGTCCGAGAACTGAAACACAAAAATTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTGAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGAgtaagtcatagtgtacagcacaaaaagaaaactggtcagatttctgtgta Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gagataatgtccaagagcactttgcatgatttctgaaaatctattttaagGATACCGAACGCCAGGTCCGAGAACTGAAACACAAAAATTCGGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTGAAGGCCAAGGATTTGCATGTTGAGCTTGCTGGAAACAGTGAACAGCGAgtaagtcatagtgtacagcacaaaaagaaaactggtcagatttctgtgta #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGC-AACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaagctctgaaacctacaatccttatctgtctttaccttcagGTGTTCCAAAAACTGGAGCAATGCCAATACAGAAT-GAAGACACATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTGAACTTCTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGGAGGTT---AGC---CATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACACGAAGCTGTTCATTTAACTTTCAAGCAAgtaagaaatagtttcttctaatgcacagcattaatggatacacaggttgc Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaagctctgaaacctacaatccttatctgtctttaccttcagGTGTTCCAAAAACTGGAGCAATGCCAATACAGAATGAAGACACATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTGAACTTCTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGGAGGTT------AGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACACGAAGCTGTTCATTTAACTTTCAAGCAAgtaagaaatagtttcttctaatgcacagcattaatggatacacaggttgc Alignment from Spaln_aa2Genome TTGAGAAGTACCAGACACTGAGC------CTGAAGCAGTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaagCTCTGAAACCTACAATCCTTATCTGTCTTTACCTTCAGGTGTTCCAAAAACTGGAGCAATGCCAATACAGAATGAAGACACATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTGAACTTCTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGGAGGTT------AGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACACGAAGCTGTTCATTTAACTTTCAAGCAAgtaagaaatagtttcttctaatgcacagcattaatggatacacaggttgc Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGC-AACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaagctctgaaacctacaatccttatctgtctttaccttcagGTGTTCCAAAAACTGGAGCAATGCCAATACAGA-ATGAAGACACATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTGAACTTCTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGGA---GGTTA---GCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACACGAAGCTGTTCATTTAACTTTCAAGCAAgtaagaaatagtttcttctaatgcacagcattaatggatacacaggttgc Alignment from Pairagon GAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAGTTGTTTCGAAAACTGGAGCAATGC--------------AACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaagctctgaaacctacaatccttatctgtctttaccttcagG---------------------------------------------------------------------------------TGTTCCAAAAACTGGAGCAATGCCAATACAGAATGAAGACAC--------------ATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTGAACTTCTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGGA---GGTTA---GCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACACGAAGCTGTTCATTTAACTTTCAAGCAAgtaagaaatagtttcttctaatgcacagcattaatggatacacaggttgc Alignment from Exonerate_protein2genome GCGTTTGAGAAGTACCAGACACTGAGCCTG---AAGCAGTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaaGCTCTGAAACCTACAATCCTTATCTGTCTTTACCTTCAGGTGTTCCAAAAACTGGAGCAATGCCAATACAGAATGAAGACACATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTGAACTTCTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGGAGGTT------AGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACACGAAGCTGTTCATTTAACTTTCAAGCAAgtaagaaatagtttcttctaatgcacagcattaatggatacacaggttgc Alignment from Exonerate_coding2genome GCGTTTGAGAAGTACCAGACACTGAGCCTG---AAGCAGTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaaGCTCTGAAACCTACAATCCTTATCTGTCTTTACCTTCAGGTGTTCCAAAAACTGGAGCAATGCCAATACAGAATGAAGACACATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTGAACTTCTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGGAGGTT------AGCCATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACACGAAGCTGTTCATTTAACTTTCAAGCAAgtaagaaatagtttcttctaatgcacagcattaatggatacacaggttgc Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG attatattaaagctctgaaacctacaatccttatctgtctttaccttcagGTGTTCCAAAAACTGGAGCAATGCCAATACAGAATGAAGACACATAGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTGAACTTCTCTGAGAAAAAGGAAAAGTCGATAAAATGGCAGGAGGAGGTTAGC------CATAAGTCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACACGAAGCTGTTCATTTAACTTTCAAGCAAgtaagaaatagtttcttctaatgcacagcattaatggatacacaggttgc #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACC-GAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTCGAGGAACTGC-AGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACC-GAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTCGAGGAACTGC-AGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTCGAGGAACTGCAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGAC-CGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTCGAGGAACTGCA-GGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGAC-CGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTCGAGGAACTGCA-GGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTCGAGGAACTGCAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTCGAGGAACTGCAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTCGAGGAACTGCAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc #### Smc5_ID5118_15 --> 0 - 2 Original Alignment GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAG-AAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAag taggatattcacaatcgaccactggactgtctatcttgtctttttcccagGAAACAAATAAACAGCTGGAAGTGGTTGACTCAGGGTGGGTTGTACTGCGTGATGCAAACAGGCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGCGAGAGGGAGC-CCTTGAACGAGAAACTAGAAAAAGGCAGCTGGAGCAAAAAGTTAGCTCCAAGCCAGGGaggtgagttcttaaacatttgaagtcagggagctagcaaaaatcatttccaa Alignment from CESAR GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAag taggatattcacaatcgaccactggactgtctatcttgtctttttcccagGAAACAAATAAACAGCTGGAAGTGGTTGACTCAGGGTGGGTTGTACTGCGTGATGCAAACAGGCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGCGAGAGGGAGCCCTTGAACGAGAAACTAGAAAAAGGCAGCTGGAGCAAAAAGTTAGCTCCAAGCCAGGGaggtgagttcttaaacatttgaagtcagggagctagcaaaaatcatttccaa Alignment from Spaln_aa2Genome GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG taggatattcacaatcgaccactggactgtctatcttgtctttttcccagGAAACAAATAAACAGCTGGAAGTGGTTGACTCAGGGTGGGTTGTACTGCGTGATGCAAACAGGCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGCGAGAGGGAGCCCTTGAACGAGAAACTAGAAAAAGGCAGCTGGAGCAAAAAGTTAGCTCCAAGCCAGGGAGgtgagttcttaaacatttgaagtcagggagctagcaaaaatcatttccaa Alignment from Spaln_nt2Genome GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG taggatattcacaatcgaccactggactgtctatcttgtctttttcccagGAAACAAATAAACAGCTGGAAGTGGTTGACTCAGGGTGGGTTGTACTGCGTGATGCAAACAGGCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGCGAGAGGGAGCCCTTGAACGAGAAACTAGAAAAAGGCAGCTGGAGCAAAAAGTTAGCTCCAAGCCAGGGAGgtgagttcttaaacatttgaagtcagggagctagcaaaaatcatttccaa Alignment from Pairagon GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAG-AAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG taggatattcacaatcgaccactggactgtctatcttgtctttttcccagGAAACAAATAAACAGCTGGAAGTGGTTGACTCAGGGTGGGTTGTACTGCGTGATGCAAACAGGCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGCGAGAGGGAGC-CCTTGAACGAGAAACTAGAAAAAGGCAGCTGGAGCAAAAAGTTAGCTCCAAGCCAGGGAGgtgagttcttaaacatttgaagtcagggagctagcaaaaatcatttccaa Alignment from Exonerate_protein2genome GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG taggatattcacaatcgaccactggactgtctatcttgtctttttcccagGAAACAAATAAACAGCTGGAAGTGGTTGACTCAGGGTGGGTTGTACTGCGTGATGCAAACAGGCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGCGAGAGGGAGCCCTTGAACGAGAAACTAGAAAAAGGCAGCTGGAGCAAAAAGTTAGCTCCAAGCCAGGGAGgtgagttcttaaacatttgaagtcagggagctagcaaaaatcatttccaa Alignment from Exonerate_coding2genome GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG taggatattcacaatcgaccactggactgtctatcttgtctttttcccagGAAACAAATAAACAGCTGGAAGTGGTTGACTCAGGGTGGGTTGTACTGCGTGATGCAAACAGGCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGCGAGAGGGAGCCCTTGAACGAGAAACTAGAAAAAGGCAGCTGGAGCAAAAAGTTAGCTCCAAGCCAGGGAGgtgagttcttaaacatttgaagtcagggagctagcaaaaatcatttccaa Alignment from GeneWise GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG taggatattcacaatcgaccactggactgtctatcttgtctttttcccagGAAACAAATAAACAGCTGGAAGTGGTTGACTCAGGGTGGGTTGTACTGCGTGATGCAAACAGGCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGCGAGAGGGAGCCCTTGAACGAGAAACTAGAAAAAGGCAGCTGGAGCAAAAAGTTAGCTCCAAGCCAGGGAGgtgagttcttaaacatttgaagtcagggagctagcaaaaatcatttccaa #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAG-CGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacacggaaacgtttatgctggcaatacttgtcttcattattccaggaCGATTCGAGGCTTCTGTTATTGAGGAACCATCAAA-AGGTGCAGATGACCTCCTGCGCTTCACAGTGCCAATCCCAGCCCTCAACAACAGCCCGCAAGTTAAAGAATTCTTCCGCgtgagggcctctactaacagggtccccttccagtcaaatcacctagcctt Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacacggaaacgtttatgctggcaatacttgtcttcattattccaggaCGATTCGAGGCTTCTGTTATTGAGGAACCATCAAAAGGTGCAGATGACCTCCTGCGCTTCACAGTGCCAATCCCAGCCCTCAACAACAGCCCGCAAGTTAAAGAATTCTTCCGCgtgagggcctctactaacagggtccccttccagtcaaatcacctagcctt Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacacggaaacgtttatgctggcaatacttgtcttcattattccagGACGATTCGAGGCTTCTGTTATTGAGGAACCATCAAAAGGTGCAGATGACCTCCTGCGCTTCACAGTGCCAATCCCAGCCCTCAACAACAGCCCGCAAGTTAAAGAATTCTTCCGCgtgagggcctctactaacagggtccccttccagtcaaatcacctagcctt Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacacggaaacgtttatgctggcaatacttgtcttcattattccagGACGATTCGAGGCTTCTGTTATTGAGGAACCATCAAAAGGTGCAGATGACCTCCTGCGCTTCACAGTGCCAATCCCAGCCCTCAACAACAGCCCGCAAGTTAAAGAATTCTTCCGCgtgagggcctctactaacagggtccccttccagtcaaatcacctagcctt Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacacggaaacgtttatgctggcaatacttgtcttcattattccagGACGATTCGAGGCTTCTGTTATTGAGGAACCATCAAAAGGTGCAGATGACCTCCTGCGCTTCACAGTGCCAATCCCAGCCCTCAACAACAGCCCGCAAGTTAAAGAATTCTTCCGCgtgagggcctctactaacagggtccccttccagtcaaatcacctagcctt Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacacggaaacgtttatgctggcaatacttgtcttcattattccagGACGATTCGAGGCTTCTGTTATTGAGGAACCATCAAAAGGTGCAGATGACCTCCTGCGCTTCACAGTGCCAATCCCAGCCCTCAACAACAGCCCGCAAGTTAAAGAATTCTTCCGCgtgagggcctctactaacagggtccccttccagtcaaatcacctagcctt Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacacggaaacgtttatgctggcaatacttgtcttcattattccagGACGATTCGAGGCTTCTGTTATTGAGGAACCATCAAAAGGTGCAGATGACCTCCTGCGCTTCACAGTGCCAATCCCAGCCCTCAACAACAGCCCGCAAGTTAAAGAATTCTTCCGCgtgagggcctctactaacagggtccccttccagtcaaatcacctagcctt Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacacggaaacgtttatgctggcaatacttgtcttcattattccagGACGATTCGAGGCTTCTGTTATTGAGGAACCATCAAAAGGTGCAGATGACCTCCTGCGCTTCACAGTGCCAATCCCAGCCCTCAACAACAGCCCGCAAGTTAAAGAATTCTTCCGCgtgagggcctctactaacagggtccccttccagtcaaatcacctagcctt #### Snx32_ID1066_12 --> 2 - 0 Original Alignment AACAAg agCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG AACAAggtaagacccacaggagtgtaagggctgaccaccatgtcccacagaaCTTATGGACTTCAAACTCTCACA-GGTCTCCTCTTTCCGTAAGAACCTCATCGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtagcctggtattcaagttacatcaaaaagaactcaatctgctcattcta Alignment from CESAR AACAAg agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG AACAAggtaagtcccacaggagtgtaagggctgaccaccatgtcccacagaaCTTATGGACTTCAAACTCTCACAGGTCTCCTCTTTCCGTAAGAACCTCATCGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtagcctggtattcaagttacatcaaaaagaactcaatctgctcattcta Alignment from Spaln_aa2Genome AACAAG AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG AACAAGgtaagacccacaggagtgtaagggctgaccaccatgtcccacagAACTTATGGACTTCAAACTCTCACAGGTCTCCTCTTTCCGTAAGAACCTCATCGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtagcctggtattcaagttacatcaaaaagaactcaatctgctcattcta Alignment from Spaln_nt2Genome AACAAG AGCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG AACAAGgtaagacccacaggagtgtaagggctgaccaccatgtcccacagAACTTATGGACTTCAAACTCTCACA-GGTCTCCTCTTTCCGTAAGAACCTCATCGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtagcctggtattcaagttacatcaaaaagaactcaatctgctcattcta Alignment from Pairagon AACAAG AGCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG AACAAGgtaagacccacaggagtgtaagggctgaccaccatgtcccacagAACTTATGGACTTCAAACTCTCACA-GGTCTCCTCTTTCCGTAAGAACCTCATCGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtagcctggtattcaagttacatcaaaaagaactcaatctgctcattcta Alignment from Exonerate_protein2genome AACAAG AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG AACAAGgtaagacccacaggagtgtaagggctgaccaccatgtcccacagAACTTATGGACTTCAAACTCTCACAGGTCTCCTCTTTCCGTAAGAACCTCATCGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtagcctggtattcaagttacatcaaaaagaactcaatctgctcattcta Alignment from Exonerate_coding2genome aacaaggtaagacccacaggagtgtaagggctgaccaccatgtcccacagaacttatggacttcaaactctcacaggtctcctctttccgtaagaacctcatcgagttgactgagctggagctcaagcaggccaaggtagcctggtattcaagttacatcaaaaagaactcaatctgctcattcta Alignment from GeneWise AACAAG AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAGGCCAGC AACAAGgtaagacccacaggagtgtaagggctgaccaccatgtcccacagAACTTATGGACTTCAAACTCTCACAGGTCTCCTCTTTCCGTAAGAACCTCATCGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGGTAGCCtggtattcaagttacatcaaaaagaactcaatctgctcattcta #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGC-CAGAGGGCCGACCGTGTTATGCACTCCCACAAGt ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCCAAA-AGCAGACCGCATTATACACTCCCACAAAcgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCCAAAAGCAGACCGCATTATACACTCCCACAAAcgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCCAAAAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCCAAAAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCCAAAAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCCAAAAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Exonerate_coding2genome ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcaggagctagatgattttttcgaacatgaaagacctttcctagttcaatataaaacccggatttgtgacagctgcccaaaagcagaccgcattatacactcccacaaacgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCCAAAAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc #### Sptbn2_ID609_4 --> 0 - 2 Original Alignment ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTG-CTGCTGTGGTGCCAGATGAAGACTGCAgg aTACCCCAATG tcggtacaaactctgttagttcttaacactgtttcgctcttctttttcagATACAAGACATCAGTGTGGAAACTGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCTTGCCTGC-GTGGTGTCAGATGAAAACAGCTgggtgagttgatgtgaccagatgtcgcttctgcatccacaggTACCCCAATG Alignment from CESAR ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAgg aTACCCCAATG tcggtacaaactctgttagttcttaacactgtttcgctcttctttttcagATACAAGACATCAGTGTGGAAACTGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCTTGCCTGCGTGGTGTCAGATGAAAACAGCTgggtgagttgatgtgaccaggagttctgtttctctcctcaggTACCCCAATG Alignment from Spaln_aa2Genome ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATG tcggtacaaactctgttagttcttaacactgtttcgctcttctttttcagATACAAGACATCAGTGTGGAAACTGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCTTGCCTGCGTGGTGTCAGATGAAAACAGCTGGgtgagttgatgtgaccagatgtcgcttctgcatccacagGTACCCCAATG Alignment from Spaln_nt2Genome ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATG tcggtacaaactctgttagttcttaacactgtttcgctcttctttttcagATACAAGACATCAGTGTGGAAACTGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCTTGCCTGCGTGGTGTCAGATGAAAACAGCTGGgtgagttgatgtgaccagatgtcgcttctgcatccacagGTACCCCAATG Alignment from Pairagon ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATG tcggtacaaactctgttagttcttaacactgtttcgctcttctttttcagATACAAGACATCAGTGTGGAAACTGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCTTGCCTGCGTGGTGTCAGATGAAAACAGCTGGgtgagttgatgtgaccagatgtcgcttctgcatccacagGTACCCCAATG Alignment from Exonerate_protein2genome tcggtacaaactctgttagttcttaacactgtttcgctcttctttttcagatacaagacatcagtgtggaaactgaagataataaggagaagaagtcaactaaagatgtcttgcctgcgtggtgtcagatgaaaacagctgggtgagttgatgtgaccagatgtcgcttctgcatccacaggtaccccaatg Alignment from Exonerate_coding2genome tcggtacaaactctgttagttcttaacactgtttcgctcttctttttcagatacaagacatcagtgtggaaactgaagataataaggagaagaagtcaactaaagatgtcttgcctgcgtggtgtcagatgaaaacagctgggtgagttgatgtgaccagatgtcgcttctgcatccacaggtaccccaatg Alignment from GeneWise ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATG tcggtacaaactctgttagttcttaacactgtttcgctcttctttttcagATACAAGACATCAGTGTGGAAACTGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCTTGCCTGCGTGGTGTCAGATGAAAACAGCTGGgtgagttgatgtgaccagatgtcgcttctgcatccacagGTACCCCAATG #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment AAGACTGCAgg aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGAT-GGGCTGGCCTTTAATGCCATTGTGCACAAACACcg AAAACAGCTgggtgagttgatgtgaccaggagttctgtttctctcctcaggTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATCGGGCTAG-TTTCAATGCCATCATACATAAACACcggtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from CESAR AAGACTGCAgg aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg AAAACAGCTgggtgagttgatgtgaccaggagttctgtttctctcctcaggTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATCGGGCTAGTTTCAATGCCATCATACATAAACACcggtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Spaln_aa2Genome AAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG AAAACAGCTGGgtgagttgatgtgaccaggagttctgtttctctcctcagGTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATCGGGCTAGTTTCAATGCCATCATACATAAACACCGgtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Spaln_nt2Genome AAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGAT-GGGCTGGCCTTTAATGCCATTGTGCACAAACACCG AAAACAGCTGGgtgagttgatgtgaccaggagttctgtttctctcctcagGTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATCGGGCTAG-TTTCAATGCCATCATACATAAACACCGgtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Pairagon AAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG AAAACAGCTGGgtgagttgatgtgaccaggagttctgtttctctcctcagGTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATCGGGCTAGTTTCAATGCCATCATACATAAACACCGgtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Exonerate_protein2genome aaaacagctgggtgagttgatgtgaccaggagttctgtttctctcctcaggtaccccaatgtaaatgtgcataacttcaccaccagctggagagatcgggctagtttcaatgccatcatacataaacaccggtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Exonerate_coding2genome aaaacagctgggtgagttgatgtgaccaggagttctgtttctctcctcaggtaccccaatgtaaatgtgcataacttcaccaccagctggagagatcgggctagtttcaatgccatcatacataaacaccggtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from GeneWise AAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG AAAACAGCTGGgtgagttgatgtgaccaggagttctgtttctctcctcagGTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATCGGGCTAGTTTCAATGCCATCATACATAAACACCGgtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg #### Sptbn2_ID612_7 --> 2 - 0 Original Alignment atGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAA-GGCAAAAGAATTGGCAAG ggacttggggggagaacacaaattattgcgggggtgctttgctacccaagatGTGAATGTAGATCAGCCAGATGAGCAGTCTGTCATTACCTATGTG------TACTACCACTACTTCTTCAGGATGAAGGCTCTTTCAGTGGAACGGGA-AAGAACTGGGAAGgtaagatctccattataagctatctgtatgttcctataaggaccagatta Alignment from CESAR atGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG ggacttggggggagaacacaaattattgcgggggtgctttgctacccaagatGTGAATGTAGATCAGCCAGATGAGCAGTCTGTCATTACCTATGTG------TACTACCACTACTTCTTCAGGATGAAGGCTCTTTCAGTGGAACGGGAAAGAACTGGGAAGgtaagatctccattataagctatctgtatgttcctataaggaccagatta Alignment from Spaln_aa2Genome ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG ggacttggggggagaacacaaattattgcgggggtgctttgctacccaagATGTGAATGTAGATCAGCCAGATGAGCAGTCTGTCATTACCTATGTG------TACTACCACTACTTCTTCAGGATGAAGGCTCTTTCAGTGGAACGGGAAAGAACTGGGAAGgtaagatctccattataagctatctgtatgttcctataaggaccagatta Alignment from Spaln_nt2Genome ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG ggacttggggggagaacacaaattattgcgggggtgctttgctacccaagATGTGAATGTAGATCAGCCAGATGAGCAGTCTGTCATTACCTATGTG------TACTACCACTACTTCTTCAGGATGAAGGCTCTTTCAGTGGAACGGGAAAGAACTGGGAAGgtaagatctccattataagctatctgtatgttcctataaggaccagatta Alignment from Pairagon ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG ggacttggggggagaacacaaattattgcgggggtgctttgctacccaagATGTGAATGTAGATCAGCCAGATGAGCAGTCTGTCATTACCTATGTG------TACTACCACTACTTCTTCAGGATGAAGGCTCTTTCAGTGGAACGGGAAAGAACTGGGAAGgtaagatctccattataagctatctgtatgttcctataaggaccagatta Alignment from Exonerate_protein2genome ggacttggggggagaacacaaattattgcgggggtgctttgctacccaagatgtgaatgtagatcagccagatgagcagtctgtcattacctatgtgtactaccactacttcttcaggatgaaggctctttcagtggaacgggaaagaactgggaaggtaagatctccattataagctatctgtatgttcctataaggaccagatta Alignment from Exonerate_coding2genome ggacttggggggagaacacaaattattgcgggggtgctttgctacccaagatgtgaatgtagatcagccagatgagcagtctgtcattacctatgtgtactaccactacttcttcaggatgaaggctctttcagtggaacgggaaagaactgggaaggtaagatctccattataagctatctgtatgttcctataaggaccagatta Alignment from GeneWise ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG ggacttggggggagaacacaaattattgcgggggtgctttgctacccaagATGTGAATGTAGATCAGCCAGATGAGCAGTCTGTCATTACCTATGTG------TACTACCACTACTTCTTCAGGATGAAGGCTCTTTCAGTGGAACGGGAAAGAACTGGGAAGgtaagatctccattataagctatctgtatgttcctataaggaccagatta #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCA-GAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag cAC ctgttactcaagcaaacctgaattcatgctttttaccctggtgacaacagGATGAGCTGAGTGCCCAGGCACGAGGTAAGGA-GCATCAGGTGCTAGAACAAGCGCTAGCTGACTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAGCATCCAGAGaggtaagcccatatagttatctattacgaccaggcttctcttcccacagcAC Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag cAC ctgttactcaagcaaacctgaattcatgctttttaccctggtgacaacagGATGAGCTGAGTGCCCAGGCACGAGGTAAGGAGCATCAGGTGCTAGAACAAGCGCTAGCTGACTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAGCATCCAGAGaggtaagcccatatagttatctattactgctgacccttggttccctcagcAC Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG CAC ctgttactcaagcaaacctgaattcatgctttttaccctggtgacaacagGATGAGCTGAGTGCCCAGGCACGAGGTAAGGAGCATCAGGTGCTAGAACAAGCGCTAGCTGACTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAGCATCCAGAGAGgtaagcccatatagttatctattacgaccaggcttctcttcccacagCAC Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG CAC ctgttactcaagcaaacctgaattcatgctttttaccctggtgacaacagGATGAGCTGAGTGCCCAGGCACGAGGTAAGGAGCATCAGGTGCTAGAACAAGCGCTAGCTGACTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAGCATCCAGAGAGgtaagcccatatagttatctattacgaccaggcttctcttcccacagCAC Alignment from Pairagon ------------------------------------------------AGGATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG CAC CTGTTACTCAAGCAAACCTGAATTCATGCTTTTTACCCTGGTGACAACAGGATGAGCTGAGTGCCCAGGCACGAGGTAAGGAGCATCAGGTGCTAGAACAAGCGCTAGCTGACTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAGCATCCAGAGAGgtaagcccatatagttatctattacgaccaggcttctcttcccacagCAC Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG CAC ctgttactcaagcaaacctgaattcatgctttttaccctggtgacaacagGATGAGCTGAGTGCCCAGGCACGAGGTAAGGAGCATCAGGTGCTAGAACAAGCGCTAGCTGACTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAGCATCCAGAGAGgtaagcccatatagttatctattacgaccaggcttctcttcccacagCAC Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG CAC ctgttactcaagcaaacctgaattcatgctttttaccctggtgacaacagGATGAGCTGAGTGCCCAGGCACGAGGTAAGGAGCATCAGGTGCTAGAACAAGCGCTAGCTGACTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAGCATCCAGAGAGgtaagcccatatagttatctattacgaccaggcttctcttcccacagCAC Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG CAC ctgttactcaagcaaacctgaattcatgctttttaccctggtgacaacagGATGAGCTGAGTGCCCAGGCACGAGGTAAGGAGCATCAGGTGCTAGAACAAGCGCTAGCTGACTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATGAGCATCCAGAGAGgtaagcccatatagttatctattacgaccaggcttctcttcccacagCAC #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAA-TTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgggatctaccatgtcttccaattcttttgtcttacaaacatttacagGTCCAACAAGTTCATGATGATGGTCCACGGCTACAAAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTAGACACAACGGATAAACTTTCGGTTCT-TAAGGCTGTCCGAGAGTTGATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtatttcttgtggtggatggtttcacccgactgctactatgttgggttgg Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgggatctaccatgtcttccaattcttttgtcttacaaacatttacagGTCCAACAAGTTCATGATGATGGTCCACGGCTACAAAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTAGACACAACGGATAAACTTTCGGTTCTTAAGGCTGTCCGAGAGTTGATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtatttcttgtggtggatggtttcacccgactgctactatgttgggttgg Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgggatctaccatgtcttccaattcttttgtcttacaaacatttacagGTCCAACAAGTTCATGATGATGGTCCACGGCTACAAAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTAGACACAACGGATAAACTTTCGGTTCTTAAGGCTGTCCGAGAGTTGATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtatttcttgtggtggatggtttcacccgactgctactatgttgggttgg Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgggatctaccatgtcttccaattcttttgtcttacaaacatttacagGTCCAACAAGTTCATGATGATGGTCCACGGCTACAAAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTAGACACAACGGATAAACTTTCGGTTCTTAAGGCTGTCCGAGAGTTGATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtatttcttgtggtggatggtttcacccgactgctactatgttgggttgg Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAA-TTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgggatctaccatgtcttccaattcttttgtcttacaaacatttacagGTCCAACAAGTTCATGATGATGGTCCACGGCTACAAAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTAGACACAACGGATAAACTTTCGGTTC-TTAAGGCTGTCCGAGAGTTGATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtatttcttgtggtggatggtttcacccgactgctactatgttgggttgg Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgggatctaccatgtcttccaattcttttgtcttacaaacatttacagGTCCAACAAGTTCATGATGATGGTCCACGGCTACAAAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTAGACACAACGGATAAACTTTCGGTTCTTAAGGCTGTCCGAGAGTTGATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtatttcttgtggtggatggtttcacccgactgctactatgttgggttgg Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgggatctaccatgtcttccaattcttttgtcttacaaacatttacagGTCCAACAAGTTCATGATGATGGTCCACGGCTACAAAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTAGACACAACGGATAAACTTTCGGTTCTTAAGGCTGTCCGAGAGTTGATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtatttcttgtggtggatggtttcacccgactgctactatgttgggttgg Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgggatctaccatgtcttccaattcttttgtcttacaaacatttacagGTCCAACAAGTTCATGATGATGGTCCACGGCTACAAAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTTGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTAGACACAACGGATAAACTTTCGGTTCTTAAGGCTGTCCGAGAGTTGATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtatttcttgtggtggatggtttcacccgactgctactatgttgggttgg #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAA-AACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG ggttgggccagacttcaagattagctttacaatgggttttccttaaaaagtGAAGTGTCGTCTGCAGACTTAGTCATCAAGCAACCAGCCAG-TATAAAGGCAGAAATTGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGATATGGGACAGGAACTGCTGGCTAGGAGCCATTATGCTGCCCAGGAAgtaagtaagggctggaaaatatcaatcctactaccaggcaagcaggtcca Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG ggttgggccagacttcaagattagctttacaatgggttttccttaaaaagtGAAGTGTCGTCTGCAGACTTAGTCATCAAGCAACCAGCCAGTATAAAGGCAGAAATTGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGATATGGGACAGGAACTGCTGGCTAGGAGCCATTATGCTGCCCAGGAAgtaagtaagggctggaaaatatcaatcctactaccaggcaagcaggtcca Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG ggttgggccagacttcaagattagctttacaatgggttttccttaaaaagTGAAGTGTCGTCTGCAGACTTAGTCATCAAGCAACCAGCCAGTATAAAGGCAGAAATTGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGATATGGGACAGGAACTGCTGGCTAGGAGCCATTATGCTGCCCAGGAAgtaagtaagggctggaaaatatcaatcctactaccaggcaagcaggtcca Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAA-AACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG ggttgggccagacttcaagattagctttacaatgggttttccttaaaaagTGAAGTGTCGTCTGCAGACTTAGTCATCAAGCAACCAGCCA-GTATAAAGGCAGAAATTGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGATATGGGACAGGAACTGCTGGCTAGGAGCCATTATGCTGCCCAGGAAgtaagtaagggctggaaaatatcaatcctactaccaggcaagcaggtcca Alignment from Pairagon ---------------------------------------------------GATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAG---GAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG GGTTGGGCCAGACTTCAAGATTAGCTTTACAATGGGTTTTCCTTAAAAAGTGAAGTGTCGTCTGCAGACTTAGTCATC---AAGCAACCAGCCAGTATAAAGGCAGAAATTGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGATATGGGACAGGAACTGCTGGCTAGGAGCCATTATGCTGCCCAGGAAgtaagtaagggctggaaaatatcaatcctactaccaggcaagcaggtcca Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG ggttgggccagacttcaagattagctttacaatgggttttccttaaaaagTGAAGTGTCGTCTGCAGACTTAGTCATCAAGCAACCAGCCAGTATAAAGGCAGAAATTGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGATATGGGACAGGAACTGCTGGCTAGGAGCCATTATGCTGCCCAGGAAgtaagtaagggctggaaaatatcaatcctactaccaggcaagcaggtcca Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG ggttgggccagacttcaagattagctttacaatgggttttccttaaaaagTGAAGTGTCGTCTGCAGACTTAGTCATCAAGCAACCAGCCAGTATAAAGGCAGAAATTGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGATATGGGACAGGAACTGCTGGCTAGGAGCCATTATGCTGCCCAGGAAgtaagtaagggctggaaaatatcaatcctactaccaggcaagcaggtcca Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG ggttgggccagacttcaagattagctttacaatgggttttccttaaaaagTGAAGTGTCGTCTGCAGACTTAGTCATCAAGCAACCAGCCAGTATAAAGGCAGAAATTGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGATATGGGACAGGAACTGCTGGCTAGGAGCCATTATGCTGCCCAGGAAgtaagtaagggctggaaaatatcaatcctactaccaggcaagcaggtcca #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTG-TCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg ggcaggttcaaatgcatgtggaccctgagtctattgtttttttcttctagATTTCAGAGAAGCTTCTCTCAGC-ACAGTCCCGGCGACAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTggtaaccttggttagaacttggacagttaattgaaaacattatgggacata Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg ggcaggttcaaatgcatgtggaccctgagtctattgtttttttcttctagATTTCAGAGAAGCTTCTCTCAGCACAGTCCCGGCGACAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTggtaaccttggttagaacttggacagttaattgaaaacattatgggacata Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtggaccctgagtctattgtttttttcttctagATTTCAGAGAAGCTTCTCTCAGCACAGTCCCGGCGACAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtaaccttggttagaacttggacagttaattgaaaacattatgggacata Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtggaccctgagtctattgtttttttcttctagATTTCAGAGAAGCTTCTCTCAGCACAGTCCCGGCGACAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtaaccttggttagaacttggacagttaattgaaaacattatgggacata Alignment from Pairagon ATCTCAGAGAAGC-TGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtggaccctgagtctattgtttttttcttctagATTTCAGAGAAGCTTCTCTCAGC-ACAGTCCCGGCGACAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtaaccttggttagaacttggacagttaattgaaaacattatgggacata Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtggaccctgagtctattgtttttttcttctagATTTCAGAGAAGCTTCTCTCAGCACAGTCCCGGCGACAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtaaccttggttagaacttggacagttaattgaaaacattatgggacata Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTT ggcaggttcaaatgcatgtggaccctgagtctattgtttttttcttctagATTTCAGAGAAGCTTCTCTCAGCACAGTCCCGGCGACAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTggtaaccttggttagaacttggacagttaattgaaaacattatgggacata Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggcaggttcaaatgcatgtggaccctgagtctattgtttttttcttctagATTTCAGAGAAGCTTCTCTCAGCACAGTCCCGGCGACAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGCTACAACTTGgtaaccttggttagaacttggacagttaattgaaaacattatgggacata #### Sptbn2_ID636_31 --> 1 - 0 Original Alignment gACTCAGTCAAAATTGCCACCATCCACA-CAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG gtgttgctaatactggcagatgaccctactgttccctctctccccaacagcAATCAATCAAAACTTCCCCCATTGTCCCCAAGCAC-ATGTGTTAATGTGGTTTGTACAGGCACTGACTCTTCCCAGgtacgttatcgtgacagatgtctgttaactcagctaacatttaaatataa Alignment from CESAR gACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG gtgttgctaatactggcagatgaccctactgttccctctctccccaacagcAATCAATCAAAACTTCCCCCATTGTCCCCAAGCACATGTGTTAATGTGGTTTGTACAGGCACTGACTCTTCCCAGgtacgttatcgtgacagatgtctgttaactcagctaacatttaaatttat Alignment from Spaln_aa2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG gtgttgctaatactggcagatgaccctactgttccctctctccccaacagCAATCAATCAAAACTTCCCCCATTGTCCCCAAGCACATGTGTTAATGTGGTTTGTACAGGCACTGACTCTTCCCAGgtacgttatcgtgacagatgtctgttaactcagctaacatttaaatataa Alignment from Spaln_nt2Genome GACTCAGTCAAAATTGCCACCATCCACAC-AAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG gtgttgctaatactggcagatgaccctactgttccctctctccccaacagCAATCAATCAAAACTTCCCCCATTGTCCCCAAGCA-CATGTGTTAATGTGGTTTGTACAGGCACTGACTCTTCCCAGgtacgttatcgtgacagatgtctgttaactcagctaacatttaaatataa Alignment from Pairagon GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCA----------------GTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG gtgttgctaatactggcagatgaccctactgttccctctctccccaacagCAATCAATCAAAACTTCC----------------CCCATTGTCCCCAAGCACATGTGTTAATGTGGTTTGTACAGGCACTGACTCTTCCCAGgtacgttatcgtgacagatgtctgttaactcagctaacatttaaatataa Alignment from Exonerate_protein2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG gtgttgctaatactggcagatgaccctactgttccctctctccccaacagCAATCAATCAAAACTTCCCCCATTGTCCCCAAGCACATGTGTTAATGTGGTTTGTACAGGCACTGACTCTTCCCAGgtacgttatcgtgacagatgtctgttaactcagctaacatttaaatataa Alignment from Exonerate_coding2genome gtgttgctaatactggcagatgaccctactgttccctctctccccaacagcaatcaatcaaaacttcccccattgtccccaagcacatgtgttaatgtggtttgtacaggcactgactcttcccaggtacgttatcgtgacagatgtctgttaactcagctaacatttaaatataa Alignment from GeneWise GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG gtgttgctaatactggcagatgaccctactgttccctctctccccaacagCAATCAATCAAAACTTCCCCCATTGTCCCCAAGCACATGTGTTAATGTGGTTTGTACAGGCACTGACTCTTCCCAGgtacgttatcgtgacagatgtctgttaactcagctaacatttaaatataa #### Ssh3_ID443_13 --> 1 - 0 Original Alignment cCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTG-GAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA aggttgtagcttactaaactgaggagtcctttctcatttttttcttccagcCAACAGAGCCGTGTTTGGGAGCAAACAGTAGGTGGTATT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTTCCATCGTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGCGAAGGAAGCC-AGAGATGCCAAAAGAAGACCTGGGACTGCAGCCTAGAATTAACCTCCGGGGGGCCATGCAATCCATTCCTCTACTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCACAGgtaagaccagaacagaggtatgcaccattgcagtaatcaccttgtcaccc Alignment from CESAR cCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA aggttgtagcttactaaactgaggagtcctttctcatttttttcttccagcCAACAGAGCCGTGTTTGGGAGCAAACAGTAGGTGGTATT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTTCCATCGTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGCGAAGGAAGCCAGAGATGCCAAAAGAAGACCTGGGACTGCAGCCTAGAATTAACCTCCGGGGGGCCATGCAATCCATTCCTCTACTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCACAGgtaagaccagaacagaggtatgcaccattgcagtaatcaccttgtcaccc Alignment from Spaln_aa2Genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA aggttgtagcttactaaactgaggagtcctttctcatttttttcttccagCCAACAGAGCCGTGTTTGGGAGCAAACAGTAGGTGGTATT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTTCCATCGTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGCGAAGGAAGCCAGAGATGCCAAAAGAAGACCTGGGACTGCAGCCTAGAATTAACCTCCGGGGGGCCATGCAATCCATTCCTCTACTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCACAGgtaagaccagaacagaggtatgcaccattgcagtaatcaccttgtcaccc Alignment from Spaln_nt2Genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCC------TGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTG-GAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA aggttgtagcttactaaactgaggagtcctttctcatttttttcttccagCCAACAGAGCCGTGTTTGGGAGCAAACAGTAG--GTGGTAT-TCCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTTCCATCGTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGCGAAGGAAGCCA-GAGATGCCAAAAGAAGACCTGGGACTGCAGCCTAGAATTAACCTCCGGGGGGCCATGCAATCCATTCCTCTACTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCACAGgtaagaccagaacagaggtatgcaccattgcagtaatcaccttgtcaccc Alignment from Pairagon CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG-------------------------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTG-GAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA aggttgtagcttactaaactgaggagtcctttctcatttttttcttccagCCAACAGAGCCGTGTTTGGGAGCAAACAGTAGGTG----------------------GTATTCCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTTCCATCGTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGCGAAGGAAGCCA-GAGATGCCAAAAGAAGACCTGGGACTGCAGCCTAGAATTAACCTCCGGGGGGCCATGCAATCCATTCCTCTACTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCACAGgtaagaccagaacagaggtatgcaccattgcagtaatcaccttgtcaccc Alignment from Exonerate_protein2genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA aggttgtagcttactaaactgaggagtcctttctcatttttttcttccagCCAACAGAGCCGTGTTTGGGAGCAAACAGTAGGTGGTATT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTTCCATCGTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGCGAAGGAAGCCAGAGATGCCAAAAGAAGACCTGGGACTGCAGCCTAGAATTAACCTCCGGGGGGCCATGCAATCCATTCCTCTACTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCACAGgtaagaccagaacagaggtatgcaccattgcagtaatcaccttgtcaccc Alignment from Exonerate_coding2genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA aggttgtagcttactaaactgaggagtcctttctcatttttttcttccagCCAACAGAGCCGTGTTTGGGAGCAAACAGTAGGTGGTATT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTTCCATCGTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGCGAAGGAAGCCAGAGATGCCAAAAGAAGACCTGGGACTGCAGCCTAGAATTAACCTCCGGGGGGCCATGCAATCCATTCCTCTACTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCACAGgtaagaccagaacagaggtatgcaccattgcagtaatcaccttgtcaccc Alignment from GeneWise CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCT------GAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA aggttgtagcttactaaactgaggagtcctttctcatttttttcttccagCCAACAGAGCCGTGTTTGGGAGCAAACAGTAGGTGGTATT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTTCCATCGTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGCGAAGGAAGCCAGAGATGCCAAAAGAAGACCTGGGACTGCAGCCTAGAATTAACCTCCGGGGGGCCATGCAATCCATTCCTCTACTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCACAGgtaagaccagaacagaggtatgcaccattgcagtaatcaccttgtcaccc #### Ssh3_ID446_10 --> 0 - 2 Original Alignment TTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACag TTAgtaggcagtcttctattcattcttccatgtaataatttctcttctagGGCACTGAATGGAATCGCTGCCA-CCTAGAAGAGCTCCAAAAAAACaggtaggttagcttgcaaactgttcgcccttattgacctcccctctcagctt Alignment from CESAR TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag TTAgtaatgagtcttctattcattcttccatgtaataatttctcttctagGGCACTGAATGGAATCGCTGCCACCTAGAAGAGCTCCAAAAAAACaggtaggttagcttgcaaactgttcgcccttattgacctcccctctcagctt Alignment from Spaln_aa2Genome TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtaggcagtcttctattcattcttccatgtaataatttctcttctagGGCACTGAATGGAATCGCTGCCACCTAGAAGAGCTCCAAAAAAACAGgtaggttagcttgcaaactgttcgcccttattgacctcccctctcagctt Alignment from Spaln_nt2Genome TTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtaggcagtcttctattcattcttccatgtaataatttctcttctagGGCACTGAATGGAATCGCTGCC-ACCTAGAAGAGCTCCAAAAAAACAGgtaggttagcttgcaaactgttcgcccttattgacctcccctctcagctt Alignment from Pairagon TTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtaggcagtcttctattcattcttccatgtaataatttctcttctagGGCACTGAATGGAATCGCTGCC-ACCTAGAAGAGCTCCAAAAAAACAGgtaggttagcttgcaaactgttcgcccttattgacctcccctctcagctt Alignment from Exonerate_protein2genome TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtaggcagtcttctattcattcttccatgtaataatttctcttctagGGCACTGAATGGAATCGCTGCCACCTAGAAGAGCTCCAAAAAAACAGgtaggttagcttgcaaactgttcgcccttattgacctcccctctcagctt Alignment from Exonerate_coding2genome ttagtaggcagtcttctattcattcttccatgtaataatttctcttctagggcactgaatggaatcgctgccacctagaagagctccaaaaaaacaggtaggttagcttgcaaactgttcgcccttattgacctcccctctcagctt Alignment from GeneWise TTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTAgtaggcagtcttctattcattcttccatgtaataatttctcttctagGGCACTGAATGGAATCGCTGCCACCTAGAAGAGCTCCAAAAAAACAGgtaggttagcttgcaaactgttcgcccttattgacctcccctctcagctt #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAG-GTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca tactcgctatctagttaattattcagggcctctgtgcacggccatcccaggGCCACATTGCAAGTATTGCATCAGGCATGTGAGCGTAGCTC-TGGTAGTGGCCTTGTGCCTGGTGGTAGTGCTCTAGCATGGGCTACTTACTATCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAAACATTTCGACCACCCAATGCTGAGCCCACAcagtacttggcaggacagggcaaagaagggaaatgagtagagggtgtttact Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca tactcgctatctagttaattattcagggcctctgtgcacggccatcccaggGCCACATTGCAAGTATTGCATCAGGCATGTGAGCGTAGCTCTGGTAGTGGCCTTGTGCCTGGTGGTAGTGCTCTAGCATGGGCTACTTACTATCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAAACATTTCGACCACCCAATGCTGAGCCCACAcagtacttggcaggacagggcaaagaagggaaatgagtagagggtgtttact Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tactcgctatctagttaattattcagggcctctgtgcacggccatcccagGGCCACATTGCAAGTATTGCATCAGGCATGTGAGCGTAGCTCTGGTAGTGGCCTTGTGCCTGGTGGTAGTGCTCTAGCATGGGCTACTTACTATCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAAACATTTCGACCACCCAATGCTGAGCCCACACAgtacttggcaggacagggcaaagaagggaaatgagtagagggtgtttact Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tactcgctatctagttaattattcagggcctctgtgcacggccatcccagGGCCACATTGCAAGTATTGCATCAGGCATGTGAGCGTAGCTCTGGTAGTGGCCTTGTGCCTGGTGGTAGTGCTCTAGCATGGGCTACTTACTATCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAAACATTTCGACCACCCAATGCTGAGCCCACACAgtacttggcaggacagggcaaagaagggaaatgagtagagggtgtttact Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAG-GTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tactcgctatctagttaattattcagggcctctgtgcacggccatcccagGGCCACATTGCAAGTATTGCATCAGGCATGTGAGCGTAGCTCT-GGTAGTGGCCTTGTGCCTGGTGGTAGTGCTCTAGCATGGGCTACTTACTATCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAAACATTTCGACCACCCAATGCTGAGCCCACACAgtacttggcaggacagggcaaagaagggaaatgagtagagggtgtttact Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAG---GCTTCAGAGCAGGAAAAGATGG tactcgctatctagttaattattcagggcctctgtgcacggccatcccagGGCCACATTGCAAGTATTGCATCAGGCATGTGAGCGTAGCTCTGGTAGTGGCCTTGTGCCTGGTGGTAGTGCTCTAGCATGGGCTACTTACTATCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAAACATTTCGACCACCCAATGCTGAGCCCACACAGTACTTGGCAGGACAGGGCAAAGAAGggaaatgagtagagggtgtttact Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAGGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGC tactcgctatctagttaattattcagggcctctgtgcacggccatcccagGGCCACATTGCAAGTATTGCATCAGGCATGTGAGCGTAGCTCTGGTAGTGGCCTTGTGCCTGGTGGTAGTGCTCTAGCATGGGCTACTTACTATCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAAACATTTCGACCACCCAATGCTGAGCCCACACAGTACTTGGCAGGACAGGGCAAAGAAGGGAAATGAGTAGAGGGTGTTTACT Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tactcgctatctagttaattattcagggcctctgtgcacggccatcccagGGCCACATTGCAAGTATTGCATCAGGCATGTGAGCGTAGCTCTGGTAGTGGCCTTGTGCCTGGTGGTAGTGCTCTAGCATGGGCTACTTACTATCAGGTGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCAATGTCTGACCTGGAAACATTTCGACCACCCAATGCTGAGCCCACACAgtacttggcaggacagggcaaagaagggaaatgagtagagggtgtttact #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCT-GGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagtAGTTTGAGTGTGACACCCCGGCG-CAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGtggtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagtAGTTTGAGTGTGACACCCCGGCGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGtggtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCCGGCGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCCGGCGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCCGGCGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCCGGCGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Exonerate_coding2genome TGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGAT-GGGGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG GCCTATTGATTACCTTCTCTCAAAGTCTACCTGTTACCTCTTCTCCTAAGTAGTTTGAGTGTGACACCCCGGCGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCCGGCGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGCACCCTGGGCCTGGTC-TTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg ctattgacattatagaggtagacagattggagaaactgctacccttacagtTGTCATAGCTGCACAAGTTGCACACTTGGACTGGTTCGTGCCCC-TTGGAGTGTTACTCATGTATACCTATATGGAGATgggtaagtggctctccgtcagggaaacaagatagggctgagaaaattgggcc Alignment from CESAR tTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg agcagcctgctattgacattatagaggtagacagactgctacccttacagttgtcatagcTGCACAAGTTGCACACTTGGACTGGTTCGTGCCCCTTGGAGTGTTACTCATGTATACCTATATGGAGATgggtaagtggctctccgtcagggaaacaagatagggctgagaaaattgggcc Alignment from Spaln_aa2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatagaggtagacagattggagaaactgctacccttacagttgtcatagCTGCACAAGTTGCACACTTGGACTGGTTCGTGCCCCTTGGAGTGTTACTCATGTATACCTATATGGAGATGGgtaagtggctctccgtcagggaaacaagatagggctgagaaaattgggcc Alignment from Spaln_nt2Genome TTCCCACAGCTGCACCCTGGGCCTGGT-CTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatagaggtagacagattggagaaactgctacccttacagttgtcatagCTGCACAAGTTGCACACTTGGACTGGTTCGTGCCCCT-TGGAGTGTTACTCATGTATACCTATATGGAGATGGgtaagtggctctccgtcagggaaacaagatagggctgagaaaattgggcc Alignment from Pairagon TTCCCACAGCTGCAC----------CCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatagaggtagacagattggagaaactgctacccttacagTTGTCATAGCTGCACAAGTTGCACACTTGGACTGGTTCGTGCCCCT-TGGAGTGTTACTCATGTATACCTATATGGAGATGGgtaagtggctctccgtcagggaaacaagatagggctgagaaaattgggcc Alignment from Exonerate_protein2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatagaggtagacagattggagaaactgctacccttacagttgtcatagCTGCACAAGTTGCACACTTGGACTGGTTCGTGCCCCTTGGAGTGTTACTCATGTATACCTATATGGAGATGGgtaagtggctctccgtcagggaaacaagatagggctgagaaaattgggcc Alignment from Exonerate_coding2genome ctattgacattatagaggtagacagattggagaaactgctacccttacagttgtcatagctgcacaagttgcacacttggactggttcgtgccccttggagtgttactcatgtatacctatatggagatgggtaagtggctctccgtcagggaaacaagatagggctgagaaaattgggcc Alignment from GeneWise TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatagaggtagacagattggagaaactgctacccttacagttgtcatagCTGCACAAGTTGCACACTTGGACTGGTTCGTGCCCCTTGGAGTGTTACTCATGTATACCTATATGGAGATGGgtaagtggctctccgtcagggaaacaagatagggctgagaaaattgggcc #### Ssh3_ID452_4 --> 0 - 2 Original Alignment GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTG-CTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag agcaatcaagttcgatctgacaactaactcatgtatcttctcaattccagGTTGCTCAACTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACCTGGTAGTAT-TATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTACCG------GAATTCCCTGACAGCaggtgagtacaaggtaaggttagctgaggctctaatataccagtgagcacag Alignment from CESAR GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag agcaatcaagttcgatctgacaactaactcatgtatcttctcaattccagGTTGCTCAACTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACCTGGTAGTATTATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTACCG------GAATTCCCTGACAGCaggtgagtacaaggtaaggttagctgaggctctaatataccagtgagcacag Alignment from Spaln_aa2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagttcgatctgacaactaactcatgtatcttctcaattccagGTTGCTCAACTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACCTGGTAGTATTATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTACCG------GAATTCCCTGACAGCAGgtgagtacaaggtaaggttagctgaggctctaatataccagtgagcacag Alignment from Spaln_nt2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGC-TGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagttcgatctgacaactaactcatgtatcttctcaattccagGTTGCTCAACTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACCTGGTAGTAT-TATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTAC------CGGAATTCCCTGACAGCAGgtgagtacaaggtaaggttagctgaggctctaatataccagtgagcacag Alignment from Pairagon GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCAC-------------GGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagttcgatctgacaactaactcatgtatcttctcaattccagGTTGCTCAACTGGAGGCAGCCCAACCACCCAGGATTC-------------AGTACCCACCTGGTAGTATTATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTAC------CGGAATTCCCTGACAGCAGgtgagtacaaggtaaggttagctgaggctctaatataccagtgagcacag Alignment from Exonerate_protein2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagttcgatctgacaactaactcatgtatcttctcaattccagGTTGCTCAACTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACCTGGTAGTATTATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTA------CCGGAATTCCCTGACAGCAGgtgagtacaaggtaaggttagctgaggctctaatataccagtgagcacag Alignment from Exonerate_coding2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagttcgatctgacaactaactcatgtatcttctcaattccagGTTGCTCAACTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACCTGGTAGTATTATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTA------CCGGAATTCCCTGACAGCAGgtgagtacaaggtaaggttagctgaggctctaatataccagtgagcacag Alignment from GeneWise GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagttcgatctgacaactaactcatgtatcttctcaattccagGTTGCTCAACTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACCTGGTAGTATTATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTA------CCGGAATTCCCTGACAGCAGgtgagtacaaggtaaggttagctgaggctctaatataccagtgagcacag #### Stip1_ID1994_7 --> 2 - 2 Original Alignment ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAG-GACTACCGGCAGATCGCCaa ttgttcgtttatctagcttttttatctagaagctcgctttcttcccacagctGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAATCGTGAGCGATT-CCGTCAAATTGCTaagtaagtcatcaaatgctgaacgaggcaaggcacctttcttagtgcctact Alignment from CESAR ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa ttgttcgtttatctagcttttttatctagaagctcgctttcttcccacagctGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAATCGTGAGCGATTCCGTCAAATTGCTaagtaagtcatcaaatgctgaacgaggcaaggcacctttcttagtgcctact Alignment from Spaln_aa2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA ttgttcgtttatctagcttttttatctagaagctcgctttcttcccacagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAATCGTGAGCGATTCCGTCAAATTGCTAAgtaagtcatcaaatgctgaacgaggcaaggcacctttcttagtgcctact Alignment from Spaln_nt2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA ttgttcgtttatctagcttttttatctagaagctcgctttcttcccacagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAATCGTGAGCGATTCCGTCAAATTGCTAAgtaagtcatcaaatgctgaacgaggcaaggcacctttcttagtgcctact Alignment from Pairagon CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA ttgttcgtttatctagcttttttatctagaagctcgctttcttcccacagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAATCGTGAGCGATTCCGTCAAATTGCTAAgtaagtcatcaaatgctgaacgaggcaaggcacctttcttagtgcctact Alignment from Exonerate_protein2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA ttgttcgtttatctagcttttttatctagaagctcgctttcttcccacagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAATCGTGAGCGATTCCGTCAAATTGCTAAgtaagtcatcaaatgctgaacgaggcaaggcacctttcttagtgcctact Alignment from Exonerate_coding2genome ttgttcgtttatctagcttttttatctagaagctcgctttcttcccacagctgttcactttgacaagggtgattataacgaatgtcgggatctctgcgaaaaggctatagaggttggaagagagaatcgtgagcgattccgtcaaattgctaagtaagtcatcaaatgctgaacgaggcaaggcacctttcttagtgcctact Alignment from GeneWise CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA ttgttcgtttatctagcttttttatctagaagctcgctttcttcccacagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAATCGTGAGCGATTCCGTCAAATTGCTAAgtaagtcatcaaatgctgaacgaggcaaggcacctttcttagtgcctact #### Stip1_ID1997_4 --> 2 - 2 Original Alignment agAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAG-TTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCac tttaccaaccagccccatgactcatatcttcctacctcctgaattttcagagAGGAAATTCATGAATCCATTTAACCTTCCAAACCTATATCAAAAGCTTGGAAA-TGACCCAGGTGCAAGGTCATTGCTAAGTGACCCTGCCTACCGGGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCacgtaaaacaatgatgcaccttaggagaactatctgcagtatctgagatctc Alignment from CESAR agAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCac tttaccaaccagccccatgactcatatcttcctacctcctgaattttcagagAGGAAATTCATGAATCCATTTAACCTTCCAAACCTATATCAAAAGCTTGGAAATGACCCAGGTGCAAGGTCATTGCTAAGTGACCCTGCCTACCGGGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCacgtaaaacaatgatgcaccttaggagaactatctgcagtatctgagatctc Alignment from Spaln_aa2Genome AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttaccaaccagccccatgactcatatcttcctacctcctgaattttcagAGAGGAAATTCATGAATCCATTTAACCTTCCAAACCTATATCAAAAGCTTGGAAATGACCCAGGTGCAAGGTCATTGCTAAGTGACCCTGCCTACCGGGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtaaaacaatgatgcaccttaggagaactatctgcagtatctgagatctc Alignment from Spaln_nt2Genome AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttaccaaccagccccatgactcatatcttcctacctcctgaattttcagAGAGGAAATTCATGAATCCATTTAACCTTCCAAACCTATATCAAAAGCTTGGAAATGACCCAGGTGCAAGGTCATTGCTAAGTGACCCTGCCTACCGGGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtaaaacaatgatgcaccttaggagaactatctgcagtatctgagatctc Alignment from Pairagon AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttaccaaccagccccatgactcatatcttcctacctcctgaattttcagAGAGGAAATTCATGAATCCATTTAACCTTCCAAACCTATATCAAAAGCTTGGAAATGACCCAGGTGCAAGGTCATTGCTAAGTGACCCTGCCTACCGGGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtaaaacaatgatgcaccttaggagaactatctgcagtatctgagatctc Alignment from Exonerate_protein2genome AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttaccaaccagccccatgactcatatcttcctacctcctgaattttcagAGAGGAAATTCATGAATCCATTTAACCTTCCAAACCTATATCAAAAGCTTGGAAATGACCCAGGTGCAAGGTCATTGCTAAGTGACCCTGCCTACCGGGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtaaaacaatgatgcaccttaggagaactatctgcagtatctgagatctc Alignment from Exonerate_coding2genome AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttaccaaccagccccatgactcatatcttcctacctcctgaattttcagAGAGGAAATTCATGAATCCATTTAACCTTCCAAACCTATATCAAAAGCTTGGAAATGACCCAGGTGCAAGGTCATTGCTAAGTGACCCTGCCTACCGGGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtaaaacaatgatgcaccttaggagaactatctgcagtatctgagatctc Alignment from GeneWise AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttaccaaccagccccatgactcatatcttcctacctcctgaattttcagAGAGGAAATTCATGAATCCATTTAACCTTCCAAACCTATATCAAAAGCTTGGAAATGACCCAGGTGCAAGGTCATTGCTAAGTGACCCTGCCTACCGGGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtaaaacaatgatgcaccttaggagaactatctgcagtatctgagatctc #### Stx3_ID3300_6 --> 0 - 1 Original Alignment CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACA-AAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTa taagactacaccaatatagtttgataggctcaccttttccactcctccagCAGTCTATCCTCTTGCAGAAA---GTGGAGGTGATGACCCAAGTACA-CGACACCCAGTTAGATTTTCGAGAACGGAGCAAAGGCCGCATCCAATATCAACTTGAAATCagtaggattcaagtaccagtggatatcttgccatgtagccactacccttaa Alignment from CESAR CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTa taagactacaccaatatagtttgataggctcaccttttccactcctccagCAGTCTATCCTCTTGCAGAAA---GTGGAGGTGATGACCCAAGTACACGACACCCAGTTAGATTTTCGAGAACGGAGCAAAGGCCGCATCCAATATCAACTTGAAATCagtaggattcaagtaccagtggatatcttgccatgtagccactacccttaa Alignment from Spaln_aa2Genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA taagactacaccaatatagtttgataggctcaccttttccactcctccagCAGTCTATCCTCTTGCAGAAA---GTGGAGGTGATGACCCAAGTACACGACACCCAGTTAGATTTTCGAGAACGGAGCAAAGGCCGCATCCAATATCAACTTGAAATCAgtaggattcaagtaccagtggatatcttgccatgtagccactacccttaa Alignment from Spaln_nt2Genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACA-AAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA taagactacaccaatatagtttgataggctcaccttttccactcctccagCAGTCTATCCTCTTGCAGAA---AGTGGAGGTGATGACCCAAGTAC-ACGACACCCAGTTAGATTTTCGAGAACGGAGCAAAGGCCGCATCCAATATCAACTTGAAATCAgtaggattcaagtaccagtggatatcttgccatgtagccactacccttaa Alignment from Pairagon CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGA-CAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA taagactacaccaatatagtttgataggctcaccttttccactcctccagCAGTCTATCCTCTTGCAGAAA---GTGGAGGTGATGACCCAAGTAC-ACGACACCCAGTTAGATTTTCGAGAACGGAGCAAAGGCCGCATCCAATATCAACTTGAAATCAgtaggattcaagtaccagtggatatcttgccatgtagccactacccttaa Alignment from Exonerate_protein2genome AGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAGCACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA TAAGACTACACCAATATAGTTTGATAGGCTCACCTTTTCCACTCCTCCAGCAGTCTATCCTCTTGCAGAAA---GTGGAGGTGATGACCCAAGTACACGACACCCAGTTAGATTTTCGAGAACGGAGCAAAGGCCGCATCCAATATCAACTTGAAATCAgtaggattcaagtaccagtggatatcttgccatgtagccactacccttaa Alignment from Exonerate_coding2genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA taagactacaccaatatagtttgataggctcaccttttccactcctccagCAGTCTATCCTCTTGCAGAAA---GTGGAGGTGATGACCCAAGTACACGACACCCAGTTAGATTTTCGAGAACGGAGCAAAGGCCGCATCCAATATCAACTTGAAATCAgtaggattcaagtaccagtggatatcttgccatgtagccactacccttaa Alignment from GeneWise CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA taagactacaccaatatagtttgataggctcaccttttccactcctccagCAGTCTATCCTCTTGCAGAAA---GTGGAGGTGATGACCCAAGTACACGACACCCAGTTAGATTTTCGAGAACGGAGCAAAGGCCGCATCCAATATCAACTTGAAATCAgtaggattcaagtaccagtggatatcttgccatgtagccactacccttaa #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCC-AGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGA---GCCCAGCTA---CTGGGCCC-TGTGTCTGCCTTTCCATTAGCACCCAATAACCTTggtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGAGCCCAGCTACTG------GGCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTggtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGAGCCCAGCTACTG------GGCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAA---TCGAGCCCAG--CTACTGGGC-CCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAG----------GGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCG----------------AGCCCAGCTACTGGGCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGAGCCCAGCTACTG------GGCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Exonerate_coding2genome ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagaatttaaaacagcagaggaatcgagcccagctactgggccctgtgtctgcctttccattagcacccaataaccttggtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGAGCCCAGCTACTG------GGCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa #### Stx5a_ID2336_8 --> 2 - 0 Original Alignment gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGC-CAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaagcttccacaaagtgccagaattctgtctgacttgctccctaggaGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGTGATGTAGCGATTGATATGATGGACCCAAGAACAAGCCCAACAGCTGC-GATCATTGATGAGCAGgtatgttacaccacattgtaaagctgatgtacaaccagggttccctttgg Alignment from CESAR gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaagcttccacaaagtgccagaattctgtctgacttgctccctaggaGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGTGATGTAGCGATTGATATGATGGACCCAAGAACAAGCCCAACAGCTGCGATCATTGATGAGCAGgtatgttacaccacattgtaaagctgatgtacaaccagggttccctttgg Alignment from Spaln_aa2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaagcttccacaaagtgccagaattctgtctgacttgctccctagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGTGATGTAGCGATTGATATGATGGACCCAAGAACAAGCCCAACAGCTGCGATCATTGATGAGCAGgtatgttacaccacattgtaaagctgatgtacaaccagggttccctttgg Alignment from Spaln_nt2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaagcttccacaaagtgccagaattctgtctgacttgctccctagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGTGATGTAGCGATTGATATGATGGACCCAAGAACAAGCCCAACAGCTGCGATCATTGATGAGCAGgtatgttacaccacattgtaaagctgatgtacaaccagggttccctttgg Alignment from Pairagon GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAG-CCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaagcttccacaaagtgccagaattctgtctgacttgctccctagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGTGATGTAGCGATTGATATGATGGACCCAAGAACAAGCCCAACAGCTGC-GATCATTGATGAGCAGgtatgttacaccacattgtaaagctgatgtacaaccagggttccctttgg Alignment from Exonerate_protein2genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaagcttccacaaagtgccagaattctgtctgacttgctccctagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGTGATGTAGCGATTGATATGATGGACCCAAGAACAAGCCCAACAGCTGCGATCATTGATGAGCAGgtatgttacaccacattgtaaagctgatgtacaaccagggttccctttgg Alignment from Exonerate_coding2genome CTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTGGAGGTGGTCCCATAATTTTG---GGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG AATGTCAAGCTTCCACAAAGTGCCAGAATTCTGTCTGACTTGCTCCCTAGGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGTGATGTAGCGATTGATATGATGGACCCAAGAACAAGCCCAACAGCTGCGATCATTGATGAGCAGgtatgttacaccacattgtaaagctgatgtacaaccagggttccctttgg Alignment from GeneWise GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG aatgtcaagcttccacaaagtgccagaattctgtctgacttgctccctagGAGGGGGTACCATAATCCTGGGGGCAGAATCACAAGCATCCAGTGATGTAGCGATTGATATGATGGACCCAAGAACAAGCCCAACAGCTGCGATCATTGATGAGCAGgtatgttacaccacattgtaaagctgatgtacaaccagggttccctttgg #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATC-TCCTGGCTCTTCCACTGCCGCATCGTCt gacctacatgtgaggcttagttgaccattaaagaaggctcctctgcctagATGGAGCGTAGTCCCAACATTCCCCTGGC-CTTCCATTGTAGGATTGTTtgtaagcgttgcttcatacaccaaaggaattttgttaacgggcgatatctc Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt gacctacatgtgaggcttagttgaccattaaagaaggctcctctgcctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGTAGGATTGTTtgtaagcgttgcttcatacaccaaaggaattttgttaacgggcgatatctc Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgaccattaaagaaggctcctctgcctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGTAGGATTGTTTgtaagcgttgcttcatacaccaaaggaattttgttaacgggcgatatctc Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACAT-CTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgaccattaaagaaggctcctctgcctagATGGAGCGTAGTCCCAACATTCCCCTGGC-CTTCCATTGTAGGATTGTTTgtaagcgttgcttcatacaccaaaggaattttgttaacgggcgatatctc Alignment from Pairagon ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgaccattaaagaaggctcctctgcctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGTAGGATTGTTTgtaagcgttgcttcatacaccaaaggaattttgttaacgggcgatatctc Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgaccattaaagaaggctcctctgcctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGTAGGATTGTTTgtaagcgttgcttcatacaccaaaggaattttgttaacgggcgatatctc Alignment from Exonerate_coding2genome gacctacatgtgaggcttagttgaccattaaagaaggctcctctgcctagatggagcgtagtcccaacattcccctggccttccattgtaggattgtttgtaagcgttgcttcatacaccaaaggaattttgttaacgggcgatatctc Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gacctacatgtgaggcttagttgaccattaaagaaggctcctctgcctagATGGAGCGTAGTCCCAACATTCCCCTGGCCTTCCATTGTAGGATTGTTTgtaagcgttgcttcatacaccaaaggaattttgttaacgggcgatatctc #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAAC-AAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg gctcccttggtctgttatggttcaggtcactaaattttatttttctttagTATGCCATTCTGATGACGATGGCACTCACTATTTTCATCAAATATGTGCTTCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATCAAGGCTGTAT-CATGCTCTACACAGAGCTATTTACGggtaagtctcccagccaatccagaggtgattcatggtgtcatcactggtac Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg gctcccttggtctgttatggttcaggtcactaaattttatttttctttagTATGCCATTCTGATGACGATGGCACTCACTATTTTCATCAAATATGTGCTTCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATCAAGGCTGTATCATGCTCTACACAGAGCTATTTACGggtaagtctcccagccaatccagaggtgattcatggtgtcatcactggtac Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctcccttggtctgttatggttcaggtcactaaattttatttttctttagTATGCCATTCTGATGACGATGGCACTCACTATTTTCATCAAATATGTGCTTCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATCAAGGCTGTATCATGCTCTACACAGAGCTATTTACGGgtaagtctcccagccaatccagaggtgattcatggtgtcatcactggtac Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAA-CAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctcccttggtctgttatggttcaggtcactaaattttatttttctttagTATGCCATTCTGATGACGATGGCACTCACTATTTTCATCAAATATGTGCTTCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATCAAGGCTGTAT-CATGCTCTACACAGAGCTATTTACGGgtaagtctcccagccaatccagaggtgattcatggtgtcatcactggtac Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAA-CAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctcccttggtctgttatggttcaggtcactaaattttatttttctttagTATGCCATTCTGATGACGATGGCACTCACTATTTTCATCAAATATGTGCTTCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATCAAGGCTGTAT-CATGCTCTACACAGAGCTATTTACGGgtaagtctcccagccaatccagaggtgattcatggtgtcatcactggtac Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctcccttggtctgttatggttcaggtcactaaattttatttttctttagTATGCCATTCTGATGACGATGGCACTCACTATTTTCATCAAATATGTGCTTCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATCAAGGCTGTATCATGCTCTACACAGAGCTATTTACGGgtaagtctcccagccaatccagaggtgattcatggtgtcatcactggtac Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctcccttggtctgttatggttcaggtcactaaattttatttttctttagTATGCCATTCTGATGACGATGGCACTCACTATTTTCATCAAATATGTGCTTCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATCAAGGCTGTATCATGCTCTACACAGAGCTATTTACGGgtaagtctcccagccaatccagaggtgattcatggtgtcatcactggtac Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG gctcccttggtctgttatggttcaggtcactaaattttatttttctttagTATGCCATTCTGATGACGATGGCACTCACTATTTTCATCAAATATGTGCTTCATTCTGTTGACCTCCAGAGTAAAAATCCCTGGGATAATCAAGGCTGTATCATGCTCTACACAGAGCTATTTACGGgtaagtctcccagccaatccagaggtgattcatggtgtcatcactggtac #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCA-CTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tacaattctaaatggtaactgggcctcacctgtgtctctactcctcaaagcaTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCCGGTCTAACACCAGAGGAGTTCTGTGCTCCTAGAAG-TCATGAGCGGCAAGACCTGGAGGCTTGCTTGCAGAGTTTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGgggtgagtatgcattcagctgaacaatatattttagtcttttttctttcgga Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tacaattctaaatggtaactgggcctcacctgtgtctctactcctcaaagcaTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCCGGTCTAACACCAGAGGAGTTCTGTGCTCCTAGAAGTCATGAGCGGCAAGACCTGGAGGCTTGCTTGCAGAGTTTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGgggtgagtatgcattcagctgaacaatatattttagtcttttttctttcgga Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tacaattctaaatggtaactgggcctcacctgtgtctctactcctcaaagCATTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCCGGTCTAACACCAGAGGAGTTCTGTGCTCCTAGAAGTCATGAGCGGCAAGACCTGGAGGCTTGCTTGCAGAGTTTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcattcagctgaacaatatattttagtcttttttctttcgga Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCAC-TAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tacaattctaaatggtaactgggcctcacctgtgtctctactcctcaaagCATTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCCGGTCTAACACCAGAGGAGTTCTGTGCTCCTAGA-AGTCATGAGCGGCAAGACCTGGAGGCTTGCTTGCAGAGTTTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcattcagctgaacaatatattttagtcttttttctttcgga Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGC---------------CATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tacaattctaaatggtaactgggcctcacctgtgtctctactcctcaaagCATTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCCGGTCTAACACCAGAGGAGTT---------------CTGTGCTCCTAGAAGTCATGAGCGGCAAGACCTGGAGGCTTGCTTGCAGAGTTTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcattcagctgaacaatatattttagtcttttttctttcgga Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tacaattctaaatggtaactgggcctcacctgtgtctctactcctcaaagCATTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCCGGTCTAACACCAGAGGAGTTCTGTGCTCCTAGAAGTCATGAGCGGCAAGACCTGGAGGCTTGCTTGCAGAGTTTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcattcagctgaacaatatattttagtcttttttctttcgga Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tacaattctaaatggtaactgggcctcacctgtgtctctactcctcaaagCATTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCCGGTCTAACACCAGAGGAGTTCTGTGCTCCTAGAAGTCATGAGCGGCAAGACCTGGAGGCTTGCTTGCAGAGTTTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcattcagctgaacaatatattttagtcttttttctttcgga Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tacaattctaaatggtaactgggcctcacctgtgtctctactcctcaaagCATTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCCGGTCTAACACCAGAGGAGTTCTGTGCTCCTAGAAGTCATGAGCGGCAAGACCTGGAGGCTTGCTTGCAGAGTTTGTGCAACATACACACACTACTGGATGCTGCAATGCTTCAAATCAACCAATACCTCACTGTGTTGGCCTCTTTGGGgtgagtatgcattcagctgaacaatatattttagtcttttttctttcgga #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTG-CAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCCAAATCT-TGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCCAAATCTTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCCAAATCTTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGC-AGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCCAAATCT-TGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCCAAATCTTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCCAAATCTTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCCAAATCTTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCCAAATCTTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGT-GGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTGG tcctggacaagacataaaggttggggactggtcctttctcttctccatagGTGAAGATACAATGTCATAAGGGCATTCCCACTGTCTTGTGTGCACGGTGTTGGCCCCTCCTATGTCGGGGCCC-GATGTGTCAGAAGAATAATCCCGGTACATATCAGgtaagaaggccaggaatgccctgtgctgctttgatctctgcagGAGCTGG Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTGG tcctggacaagacataaaggttggggactggtcctttctcttctccatagGTGAAGATACAATGTCATAAGGGCATTCCCACTGTCTTGTGTGCACGGTGTTGGCCCCTCCTATGTCGGGGCCCGATGTGTCAGAAGAATAATCCCGGTACATATCAGgtaagaaggccaggaatgcccatgaatgcaatgtcattcccagGAGCTGG Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTGG tcctggacaagacataaaggttggggactggtcctttctcttctccatagGTGAAGATACAATGTCATAAGGGCATTCCCACTGTCTTGTGTGCACGGTGTTGGCCCCTCCTATGTCGGGGCCCGATGTGTCAGAAGAATAATCCCGGTACATATCAGgtaagaaggccaggaatgccctgtgctgctttgatctctgcagGAGCTGG Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTGG tcctggacaagacataaaggttggggactggtcctttctcttctccatagGTGAAGATACAATGTCATAAGGGCATTCCCACTGTCTTGTGTGCACGGTGTTGGCCCCTCCTATGTCGGGGCCCGATGTGTCAGAAGAATAATCCCGGTACATATCAGgtaagaaggccaggaatgccctgtgctgctttgatctctgcagGAGCTGG Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTGG tcctggacaagacataaaggttggggactggtcctttctcttctccatagGTGAAGATACAATGTCATAAGGGCATTCCCACTGTCTTGTGTGCACGGTGTTGGCCCCTCCTATGTCGGGGCCCGATGTGTCAGAAGAATAATCCCGGTACATATCAGgtaagaaggccaggaatgccctgtgctgctttgatctctgcagGAGCTGG Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTGG tcctggacaagacataaaggttggggactggtcctttctcttctccatagGTGAAGATACAATGTCATAAGGGCATTCCCACTGTCTTGTGTGCACGGTGTTGGCCCCTCCTATGTCGGGGCCCGATGTGTCAGAAGAATAATCCCGGTACATATCAGgtaagaaggccaggaatgccctgtgctgctttgatctctgcagGAGCTGG Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTGG tcctggacaagacataaaggttggggactggtcctttctcttctccatagGTGAAGATACAATGTCATAAGGGCATTCCCACTGTCTTGTGTGCACGGTGTTGGCCCCTCCTATGTCGGGGCCCGATGTGTCAGAAGAATAATCCCGGTACATATCAGgtaagaaggccaggaatgccctgtgctgctttgatctctgcagGAGCTGG Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTGG tcctggacaagacataaaggttggggactggtcctttctcttctccatagGTGAAGATACAATGTCATAAGGGCATTCCCACTGTCTTGTGTGCACGGTGTTGGCCCCTCCTATGTCGGGGCCCGATGTGTCAGAAGAATAATCCCGGTACATATCAGgtaagaaggccaggaatgccctgtgctgctttgatctctgcagGAGCTGG #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GGCCAGCAG GATGAGGACACGGACAAG-CTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtctgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACCTACTCTCTT-CCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from CESAR GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgttgagacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACCTACTCTCTTCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Spaln_aa2Genome GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtctgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACCTACTCTCTTCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Spaln_nt2Genome GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtctgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACCTACTCTCTTCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Pairagon GGCCAG-----------------------------------------CAGGATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAGTCTGTACATAGTGTTGAGGATGGTTTTTATTCTATTTCAGGATGAGGACACAGAGAAACCTACTCTCTTCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Exonerate_protein2genome GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtctgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACCTACTCTCTTCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Exonerate_coding2genome ggccaacaagtctgtacatagtgttgaggatggtttttattctatttcaggatgaggacacagagaaacctactctcttcccagatgcaacaacattggagaatagctggacccctgataaggaagtagccggaagtcctggggaagaggagactgatgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from GeneWise GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtctgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACCTACTCTCTTCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTC-ATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccaggCACTTCGGTGAGGCCCACAGGCTGCTACTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCCATCAAT---TCCCTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTC-ATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccaggCACTTCGGTGAGGCCCACAGGCTGCTACTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCCATCAAT---TCCCTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTC-ATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTTGTGTCA------GAGCTTATTTTCCTCCTGGGCCTCTATCTGGTG------CTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCcATCAAT---TCCCTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTC-ATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTTG------TGTCAGAGCTTATTTTCCTCCTGGGCCT------CTATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCCATCAAT---TCCCTCTTCTCCCAGAACC---CAAATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTT-CATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTTG------TGTCAGAGCTTATTTTCCTCCTGGGCCT------CTATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCCATCAAT---TCCCTCTTCTCCCAGAACC---CAAATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTC-ATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCCATCAATTCC---CTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Exonerate_coding2genome tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccaggcacttcggtgaggcccacaggctgctacttgtgtcagagcttattttcctcctgggcctctatctggtgctcctaattctctataaatgggtaaacatctctgcaactagttctgcctcagcccccattattcacttccatcaattccctcttctcccagaacccaaatcatctgctgttccatgggcaggtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCCATCAATTCC--CTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTG-TTCCTCAGCATCTTCAACCACgt accaatgaagtgcgagttgcagtgtattcccgtctgttccccacgcctagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTTAGGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCCTTCC-CAGCATCTTCAATCAGgtgtcagtcatttgattagggtgtagtatgtgctgagtcttgcctcatcctg Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt accaatgaagtgcgagttgcagtgtattcccgtctgttccccacgcctagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTTAGGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCCTTCCCAGCATCTTCAATCAGgtgtcagtcatttgattagggtgtagtatgtgctgagtcttgcctcatcctg Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaatgaagtgcgagttgcagtgtattcccgtctgttccccacgcctagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTTAGGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCCTTCCCAGCATCTTCAATCAGGTgtcagtcatttgattagggtgtagtatgtgctgagtcttgcctcatcctg Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaatgaagtgcgagttgcagtgtattcccgtctgttccccacgcctagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTTAGGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCCTTCCCAGCATCTTCAATCAGGTgtcagtcatttgattagggtgtagtatgtgctgagtcttgcctcatcctg Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaatgaagtgcgagttgcagtgtattcccgtctgttccccacgcctagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTTAGGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCCTTCCCAGCATCTTCAATCAGGTgtcagtcatttgattagggtgtagtatgtgctgagtcttgcctcatcctg Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaatgaagtgcgagttgcagtgtattcccgtctgttccccacgcctagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTTAGGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCCTTCCCAGCATCTTCAATCAGGTgtcagtcatttgattagggtgtagtatgtgctgagtcttgcctcatcctg Alignment from Exonerate_coding2genome accaatgaagtgcgagttgcagtgtattcccgtctgttccccacgcctagctctgcagtctggccacaaaccacctgagctttctcaactcttttaggatgaagacatcagtcatcctaggagtcatacacatggcatttggggtccttcccagcatcttcaatcaggtgtcagtcatttgattagggtgtagtatgtgctgagtcttgcctcatcctg Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT accaatgaagtgcgagttgcagtgtattcccgtctgttccccacgcctagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTTAGGATGAAGACATCAGTCATCCTAGGAGTCATACACATGGCATTTGGGGTCCTTCCCAGCATCTTCAATCAGGTgtcagtcatttgattagggtgtagtatgtgctgagtcttgcctcatcctg #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACT-GGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcacttctggctcaaaatattggttatttccttctttgtttttaacagtGAGGAATATTTATCTTGGCATTCCATGTTCACCTTGAACCCCAACATAACTCGGAGTCTTTC-TGGCCCATACCCATTTGGCATTGAGCCTgtaagggcctctgagcataggatagatagatacatgaagaaggtagtcta Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcacttctggctcaaaatattggttatttccttctttgtttttaacagtGAGGAATATTTATCTTGGCATTCCATGTTCACCTTGAACCCCAACATAACTCGGAGTCTTTCTGGCCCATACCCATTTGGCATTGAGCCTgtaagggcctctgagcataggatagatagatacatgaagaaggtagtcta Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcacttctggctcaaaatattggttatttccttctttgtttttaacagTGAGGAATATTTATCTTGGCATTCCATGTTCACCTTGAACCCCAACATAACTCGGAGTCTTTCTGGCCCATACCCATTTGGCATTGAGCCTgtaagggcctctgagcataggatagatagatacatgaagaaggtagtcta Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcacttctggctcaaaatattggttatttccttctttgtttttaacagTGAGGAATATTTATCTTGGCATTCCATGTTCACCTTGAACCCCAACATAACTCGGAGTCTTTCTGGCCCATACCCATTTGGCATTGAGCCTgtaagggcctctgagcataggatagatagatacatgaagaaggtagtcta Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACT-GGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG GAGCACTTCTGGCTCAAAATATTGGTTATTTCCTTCTTTGTTTTTAACAGTGAGGAATATTTATCTTGGCATTCCATGTTCACCTTGAACCCCAACATAACTCGGAGTCTTTC-TGGCCCATACCCATTTGGCATTGAGCCTgtaagggcctctgagcataggatagatagatacatgaagaaggtagtcta Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcacttctggctcaaaatattggttatttccttctttgtttttaacagTGAGGAATATTTATCTTGGCATTCCATGTTCACCTTGAACCCCAACATAACTCGGAGTCTTTCTGGCCCATACCCATTTGGCATTGAGCCTgtaagggcctctgagcataggatagatagatacatgaagaaggtagtcta Alignment from Exonerate_coding2genome gagcacttctggctcaaaatattggttatttccttctttgtttttaacagtgaggaatatttatcttggcattccatgttcaccttgaaccccaacataactcggagtctttctggcccatacccatttggcattgagcctgtaagggcctctgagcataggatagatagatacatgaagaaggtagtcta Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG gagcacttctggctcaaaatattggttatttccttctttgtttttaacagTGAGGAATATTTATCTTGGCATTCCATGTTCACCTTGAACCCCAACATAACTCGGAGTCTTTCTGGCCCATACCCATTTGGCATTGAGCCTgtaagggcctctgagcataggatagatagatacatgaagaaggtagtcta #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAAT---GAGTGCTTCAGCCGAGCC-ACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCACGCTACTA-CTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGctgtgagtctatgtggagcacttctggctcaaaatattggttacatgccagt Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAAT---GAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCACGCTACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGctgtgagtctatgtggagcacttctggctcaaaatattggttatttccttct Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTAC---AATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCACGCTACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTgtgagtctatgtggagcacttctggctcaaaatattggttacatgccagt Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCAT--CTACAA-TGAGTGCTTCAGCCGAGC-CACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCACGCTACTACTTT-CCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTgtgagtctatgtggagcacttctggctcaaaatattggttacatgccagt Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCAT---------------------------------CTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCACGCTACTAC------------------------------TTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTGTGAGTCTATGTGGAGCACTTCTGGCTCAAAATATTGGTTACATGCCAGT Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATC---TACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCACGCTACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTgtgagtctatgtggagcacttctggctcaaaatattggttacatgccagt Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATC---TACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCACGCTACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGctgtgagtctatgtggagcacttctggctcaaaatattggttacatgccagt Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATC---TACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCACGCTACTACTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTgtgagtctatgtggagcacttctggctcaaaatattggttacatgccagt #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTT-GTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CAGTGGCAgtcagattagtggcaggacatgctcatggtgctttccactagGGTGAACCTGCAACCTGGATGACCTTTCATCATTT-CTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATtggtgagaaggtcagttgctgctcttggtgcattgattacttattgacaact Alignment from CESAR CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CAGTGGCAgtactcttagtggcaggacatgctcatggtgctttccactagGGTGAACCTGCAACCTGGATGACCTTTCATCATTTCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATtggtgagaaggtcagttgctgctcttggtgcattgattacttattgacaact Alignment from Spaln_aa2Genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtcagattagtggcaggacatgctcatggtgctttccactagGGTGAACCTGCAACCTGGATGACCTTTCATCATTTCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtgagaaggtcagttgctgctcttggtgcattgattacttattgacaact Alignment from Spaln_nt2Genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtcagattagtggcaggacatgctcatggtgctttccactagGGTGAACCTGCAACCTGGATGACCTTTCATCATTTCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtgagaaggtcagttgctgctcttggtgcattgattacttattgacaact Alignment from Pairagon CAGTGAC------------------------------------------GGGTGAGCCTGCAACTTGGATGACCTTTGTCATC--TCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAGTCAGATTAGTGGCAGGACATGCTCATGGTGCTTTCCACTAGGGTGAACCTGCAACCTGGATGACCTT--TCATCATTTCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtgagaaggtcagttgctgctcttggtgcattgattacttattgacaact Alignment from Exonerate_protein2genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtcagattagtggcaggacatgctcatggtgctttccactagGGTGAACCTGCAACCTGGATGACCTTTCATCATTTCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtgagaaggtcagttgctgctcttggtgcattgattacttattgacaact Alignment from Exonerate_coding2genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtcagattagtggcaggacatgctcatggtgctttccactagGGTGAACCTGCAACCTGGATGACCTTTCATCATTTCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtgagaaggtcagttgctgctcttggtgcattgattacttattgacaact Alignment from GeneWise CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtcagattagtggcaggacatgctcatggtgctttccactagGGTGAACCTGCAACCTGGATGACCTTTCATCATTTCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtgagaaggtcagttgctgctcttggtgcattgattacttattgacaact #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGACCCTTC-TCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa cacagctacaacctcacagtgtatgtgctgatttttctcaccatctgcagGTGGCAGCTGACCATACAGAAGGTCCTCTCCTCAGAAACAA-ACCCCTTCTTCCAGGCACACGGGGTCCGCATTCTGACCTGAAAGTTaagtaaggtgaagcatccaagcttttttgtctcatcatattcacaccagaag Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa cacagctacaacctcacagtgtatgtgctgatttttctcaccatctgcagGTGGCAGCTGACCATACAGAAGGTCCTCTCCTCAGAAACAAACCCCTTCTTCCAGGCACACGGGGTCCGCATTCTGACCTGAAAGTTaagtaaggtgaagcatccaagcttttttgtctcatcatattcacaccagaag Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagctacaacctcacagtgtatgtgctgatttttctcaccatctgcagGTGGCAGCTGACCATACAGAAGGTCCTCTCCTCAGAAACAAACCCCTTCTTCCAGGCACACGGGGTCCGCATTCTGACCTGAAAGTTAAgtaaggtgaagcatccaagcttttttgtctcatcatattcacaccagaag Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACC-CTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagctacaacctcacagtgtatgtgctgatttttctcaccatctgcagGTGGCAGCTGACCATACAGAAGGTCCTCTCCTCAGAAACAA-ACCCCTTCTTCCAGGCACACGGGGTCCGCATTCTGACCTGAAAGTTAAgtaaggtgaagcatccaagcttttttgtctcatcatattcacaccagaag Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACC-CTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagctacaacctcacagtgtatgtgctgatttttctcaccatctgcagGTGGCAGCTGACCATACAGAAGGTCCTCTCCTCAGAAACAA-ACCCCTTCTTCCAGGCACACGGGGTCCGCATTCTGACCTGAAAGTTAAgtaaggtgaagcatccaagcttttttgtctcatcatattcacaccagaag Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagctacaacctcacagtgtatgtgctgatttttctcaccatctgcagGTGGCAGCTGACCATACAGAAGGTCCTCTCCTCAGAAACAAACCCCTTCTTCCAGGCACACGGGGTCCGCATTCTGACCTGAAAGTTAAgtaaggtgaagcatccaagcttttttgtctcatcatattcacaccagaag Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagctacaacctcacagtgtatgtgctgatttttctcaccatctgcagGTGGCAGCTGACCATACAGAAGGTCCTCTCCTCAGAAACAAACCCCTTCTTCCAGGCACACGGGGTCCGCATTCTGACCTGAAAGTTAAgtaaggtgaagcatccaagcttttttgtctcatcatattcacaccagaag Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagctacaacctcacagtgtatgtgctgatttttctcaccatctgcagGTGGCAGCTGACCATACAGAAGGTCCTCTCCTCAGAAACAAACCCCTTCTTCCAGGCACACGGGGTCCGCATTCTGACCTGAAAGTTAAgtaaggtgaagcatccaagcttttttgtctcatcatattcacaccagaag #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGT-CTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG atgtgtgtttgtggaatcccttctggcctaggtttggttttgtttcacagccTTCCTCAAAGAAGAAGTGCCCTGGGCTAGTCCTAACCC-AGCTCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTTGCATCCAGGAAGAGACAGATCGCTTGGCTCCTGAGCTTCAGGATGTCCATAGTAATCAGGAGGCACTGCAGGCTCAGTTGCACCATTTACGGCTATACTCATCTGTGCTGGGCCAGAGCCACAGCCCACCAgtgagttcctagccaagagagctttcaagtaattttttcataattggagc Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG atgtgtgtttgtggaatcccttctggcctaggtttggttttgtttcacagccTTCCTCAAAGAAGAAGTGCCCTGGGCTAGTCCTAACCCAGCTCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTTGCATCCAGGAAGAGACAGATCGCTTGGCTCCTGAGCTTCAGGATGTCCATAGTAATCAGGAGGCACTGCAGGCTCAGTTGCACCATTTACGGCTATACTCATCTGTGCTGGGCCAGAGCCACAGCCCACCAgtgagttcctagccaagagagctttcaagtaattttttcataattggagc Alignment from Spaln_aa2Genome TTTACCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG tgtgtttgtggaatcccttctggcctaggtttggttttgtttcaca gCCTTCCTCAAAGAAGAAGTGCCCTGGGCTAGTCCTAACCCAGCTCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTTGCATCCAGGAAGAGACAGATCGCTTGGCTCCTGAGCTTCAGGATGTCCATAGTAATCAGGAGGCACTGCAGGCTCAGTTGCACCATTTACGGCTATACTCATCTGTGCTGGGCCAGAGCCACAGCCCACCAgtgagttcctagccaagagagctttcaagtaattttttcataattggagc Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG atgtgtgtttgtggaatcccttctggcctaggtttggttttgtttcacagCCTTCCTCAAAGAAGAAGTGCCCTGGGCTAGTCCTAACCCAGCTCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTTGCATCCAGGAAGAGACAGATCGCTTGGCTCCTGAGCTTCAGGATGTCCATAGTAATCAGGAGGCACTGCAGGCTCAGTTGCACCATTTACGGCTATACTCATCTGTGCTGGGCCAGAGCCACAGCCCACCAgtgagttcctagccaagagagctttcaagtaattttttcataattggagc Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG atgtgtgtttgtggaatcccttctggcctaggtttggttttgtttcacagCCTTCCTCAAAGAAGAAGTGCCCTGGGCTAGTCCTAACCCAGCTCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTTGCATCCAGGAAGAGACAGATCGCTTGGCTCCTGAGCTTCAGGATGTCCATAGTAATCAGGAGGCACTGCAGGCTCAGTTGCACCATTTACGGCTATACTCATCTGTGCTGGGCCAGAGCCACAGCCCACCAgtgagttcctagccaagagagctttcaagtaattttttcataattggagc Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG atgtgtgtttgtggaatcccttctggcctaggtttggttttgtttcacagCCTTCCTCAAAGAAGAAGTGCCCTGGGCTAGTCCTAACCCAGCTCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTTGCATCCAGGAAGAGACAGATCGCTTGGCTCCTGAGCTTCAGGATGTCCATAGTAATCAGGAGGCACTGCAGGCTCAGTTGCACCATTTACGGCTATACTCATCTGTGCTGGGCCAGAGCCACAGCCCACCAgtgagttcctagccaagagagctttcaagtaattttttcataattggagc Alignment from Exonerate_coding2genome ACCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG atgtgtgtttgtggaatcccttctggcctaggtttggttttgtttcacaGCCTTCCTCAAAGAAGAAGTGCCCTGGGCTAGTCCTAACCCAGCTCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTTGCATCCAGGAAGAGACAGATCGCTTGGCTCCTGAGCTTCAGGATGTCCATAGTAATCAGGAGGCACTGCAGGCTCAGTTGCACCATTTACGGCTATACTCATCTGTGCTGGGCCAGAGCCACAGCCCACCAgtgagttcctagccaagagagctttcaagtaattttttcataattggagc Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG atgtgtgtttgtggaatcccttctggcctaggtttggttttgtttcacagCCTTCCTCAAAGAAGAAGTGCCCTGGGCTAGTCCTAACCCAGCTCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTTGCATCCAGGAAGAGACAGATCGCTTGGCTCCTGAGCTTCAGGATGTCCATAGTAATCAGGAGGCACTGCAGGCTCAGTTGCACCATTTACGGCTATACTCATCTGTGCTGGGCCAGAGCCACAGCCCACCAgtgagttcctagccaagagagctttcaagtaattttttcataattggagc #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTC-CGGCGCTGCGAGGAACTGGAGAAGACGTTTa GCCTGTGGATTTGAGAGATgtatgtagtgagtttgctttgttgtgtttagTTCAATGAGTTGGTGAGTGCTGTCCAGAGACGCTTTGTAGTAGATGTGCCAGCACTGTG-GGAGCTGGACAAG---ATTagtgagtacttgcttggcttactgagatgacaggatgtactttttatttac Alignment from CESAR CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa GCCTGTGGATTTGAGAGATgtgagtagtgagtttgctttgttgtgtttagTTCAATGAGTTGGTGAGTGCTGTCCAGAGACGCTTTGTAGTAGATGTGCCAGCACTGTGGGAGCTGGACAAG---ATTagtgagtacttgcttggcttactgagatgacaggatgtactttttatttac Alignment from Spaln_aa2Genome CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACG- GCCTGTGGATTTGAGAGATgtatgtagtgagtttgctttgttgtgtttagTTCAATGAGTTGGTGAGTGCTGTCCAGAGACGCTTTGTAGTAGATGTGCCAGCACTGTGGGAGCTGGACAAGATTAgtgagtacttgcttggcttactgagatgacaggatgtactttttatttac Alignment from Spaln_nt2Genome CCTCGTGGAGTTCAGAGAC-------------------------------CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGT-CCGGCGCTGCGAGGAACTGGAGAAGACGTTTA GCCTGTGGATTTGAGAGATGTATGTAGTGAGTTTGCTTTGTTGTGTTTAGTTCAATGAGTTGGTGAGTGCTGTCCAGAGACGCTTTGTAGTAGATGTGCCAGCACTGTG-GGAGCTGGACAAGA---TTAgtgagtacttgcttggcttactgagatgacaggatgtactttttatttac Alignment from Pairagon CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGT-CCGGCGCTGCGAGGAACTGGAGAAGACGTTTA GCCTGTGGATTTGAGAGATgtatgtagtgagtttgctttgttgtgtttagTTCAATGAGTTGGTGAGTGCTGTCCAGAGACGCTTTGTAGTAGATGTGCCAGCACTGTG-GGAGCTGGACAAGA---TTAgtgagtacttgcttggcttactgagatgacaggatgtactttttatttac Alignment from Exonerate_protein2genome CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGT GCCTGTGGATTTGAGAGATgtatgtagtgagtttgctttgttgtgtttagTTCAATGAGTTGGTGAGTGCTGTCCAGAGACGCTTTGTAGTAGATGTGCCAGCACTGTGGGAGCTGGACAAGATTAgtgagtacttgcttggcttactgagatgacaggatgtactttttatttac Alignment from Exonerate_coding2genome CCTCGTGGAGTTCAGAGACCTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAG GCCTGTGGATTTGAGAGATGTATGTAGTGAGTTTGCTTTGTTGTGTTTAGTTCAATGAGTTGgtgagtgctgtccagagacgctttgtagtagatgtgccagcactgtgggagctggacaagattagtgagtacttgcttggcttactgagatgacaggatgtactttttatttac Alignment from GeneWise CCTCGTGGAGTTCAGAGAC CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA GCCTGTGGATTTGAGAGATgtatgtagtgagtttgctttgttgtgtttagTTCAATGAGTTGGTGAGTGCTGTCCAGAGACGCTTTGTAGTAGATGTGCCAGCACTGTGGGAGCTGGACAAG---ATTAgtgagtacttgcttggcttactgagatgacaggatgtactttttatttac #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment GTGCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTC-TTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAggtttgatagttttctcttggggaatgtaggaTTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCCCTAAAGG-CCTATCTGGTAGCTATAGCTCTGAGCCAGCTCTGGATGCAGTTTCGGACTACAACTTTAGAGTCTTGAGGgtccgtaatagccgggtttctgcagcttctgatttctaaatggtaggcac Alignment from CESAR GTGCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAggttgtgtagttttctcttggggaatgtaggaTTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCCCTAAAGGCCTATCTGGTAGCTATAGCTCTGAGCCAGCTCTGGATGCAGTTTCGGACTACAACTTTAGAGTCTTGAGGgtccgtaatagccgggtttctgcagcttctgatttctaaatggtaggcac Alignment from Spaln_aa2Genome GTGCCGAGAGCAACCCTGCA-----------------------------GGTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGGTTTGATAGTTTTCTCTTGGGGAATGtaGGATTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCCCTAAAGGCCTATCTGGTAGCTATAGCTCTGAGCCAGCTCTGGATGCAGTTTCGGACTACAACTTTAGAGTCTTGAGGgtccgtaatagccgggtttctgcagcttctgatttctaaatggtaggcac Alignment from Spaln_nt2Genome CCGAGAGCAACCCTGCA GGTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG CAGAGAGCAACC---CAgcaggtttgatagttttctcttggggaatgtagGATTT-CTAGAGACTAAGAGCATGACCTCTTCCCGTTTCCCTAAAGGCCTATCTGGTAGCTATAGCTCTGAGCCAGCTCTGGATGCAGTTTCGGACTACAACTTTAGAGTCTTGAGGgtccgtaatagccgggtttctgcagcttctgatttctaaatggtaggcac Alignment from Pairagon GTGCCGAGAGCAACCCTGCAGGT-----------------------------TTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGGTTTGATAGTTTTCTCTTGGGGAATGTAGGATTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCCCTAAAGGCCTATCTGGTAGCTATAGCTCTGAGCCAGCTCTGGATGCAGTTTCGGACTACAACTTTAGAGTCTTGAGGgtccgtaatagccgggtttctgcagcttctgatttctaaatggtaggcac Alignment from Exonerate_protein2genome CCGAGA GCAACCCTGCAGGTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG CAGAGAgcaacccagcaggtttgatagttttctcttggGGAAT---GTAGGATTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCCCTAAAGGCCTATCTGGTAGCTATAGCTCTGAGCCAGCTCTGGATGCAGTTTCGGACTACAACTTTAGAGTCTTGAGGgtccgtaatagccgggtttctgcagcttctgatttctaaatggtaggcac Alignment from Exonerate_coding2genome CCGAGA GCAACCCTGCAGGTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG CAGAGAgcaacccagcaggtttgatagttttctcttggGGAAT---GTAGGATTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCCCTAAAGGCCTATCTGGTAGCTATAGCTCTGAGCCAGCTCTGGATGCAGTTTCGGACTACAACTTTAGAGTCTTGAGGgtccgtaatagccgggtttctgcagcttctgatttctaaatggtaggcac Alignment from GeneWise GTGCCGAGAGCAACCCTGCAG GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG GTGCAGAGAGCAACCCAGCAGgtttgatagttttctcttggggaatgtagGATTTCTAGAGACTAAGAGCATGACCTCTTCCCGTTTCCCTAAAGGCCTATCTGGTAGCTATAGCTCTGAGCCAGCTCTGGATGCAGTTTCGGACTACAACTTTAGAGTCTTGAGGgtccgtaatagccgggtttctgcagcttctgatttctaaatggtaggcac #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGT-GCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCA accatttaaaactattattttttcagtttcctttttaatctgttccacagGCCGGGGATCCCATCCTGACATACTACCCAAGCTGGTCTGTGGTAAGCTTATTAAGACAACCCGCAGCTGTAGGAGCTAGCGGACTTTGTCGCAG-GAGCAACCCAGCAggttggctaacttctctcttttctgtacaggaTTTCTAGAGACTAAGAGCA Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCA accatttaaaactattattttttcagtttcctttttaatctgttccacagGCCGGGGATCCCATCCTGACATACTACCCAAGCTGGTCTGTGGTAAGCTTATTAAGACAACCCGCAGCTGTAGGAGCTAGCGGACTTTGTCGCAGGAGCAACCCAGCAggttgtgtagttttctcttggggaatgtaggaTTTCTAGAGACTAAGAGCA Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCA-----------------------------GGTTTCCTAGAGAGTAAAAGCA accatttaaaactattattttttcagtttcctttttaatctgttccacagGCCGGGGATCCCATCCTGACATACTACCCAAGCTGGTCTGTGGTAAGCTTATTAAGACAACCCGCAGCTGTAGGAGCTAGCGGACTTTGTCGCAGGAGCAACCCAGCAGGTTGGCTAACTTCTCTCTTTTCTGTAcaGGATTTCTAGAGACTAAGAGCA Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCA GGTTTCCTAGAGAGTAAAAGC accatttaaaactattattttttcagtttcctttttaatctgttccacagGCCGGGGATCCCATCCTGACATACTACCCAAGCTGGTCTGTGGTAAGCTTATTAAGACAACCCGCAGCTGTAGGAGCTAGCGGACTTTGTCGCAGGAGCAACC---CAgcaggttggctaacttctctcttttctgtacagGATTT-CTAGAGACTAAGAGC Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAGGT-----------------------------TTCCTAGAGAGTAAAAGCA accatttaaaactattattttttcagtttcctttttaatctgttccacagGCCGGGGATCCCATCCTGACATACTACCCAAGCTGGTCTGTGGTAAGCTTATTAAGACAACCCGCAGCTGTAGGAGCTAGCGGACTTTGTCGCAGGAGCAACCCAGCAGGTTGGCTAACTTCTCTCTTTTCTGTACAGGATTTCTAGAGACTAAGAGCA Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTG CAGGTTTCCTAGAGAGTAAAA accatttaaaactattattttttcagtttcctttttaatctgttccacagGCCGGGGATCCCATCCTGACATACTACCCAAGCTGGTCTGTGGTAAGCTTATTAAGACAACCCGCAGCTGTAGGAGCTAGCGGACTTTGTCGCAGGAGCAACCCAGcaggttggctaacttctctcttttctgtacagGA---TTTCTAGAGACTAAGA Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTG CAGGTTTCCTAGAGAGTAAAA accatttaaaactattattttttcagtttcctttttaatctgttccacagGCCGGGGATCCCATCCTGACATACTACCCAAGCTGGTCTGTGGTAAGCTTATTAAGACAACCCGCAGCTGTAGGAGCTAGCGGACTTTGTCGCAGGAGCAACCCAGcaggttggctaacttctctcttttctgtacagGA---TTTCTAGAGACTAAGA Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG GTTTCCTAGAGAGTAAAAGCA accatttaaaactattattttttcagtttcctttttaatctgttccacagGCCGGGGATCCCATCCTGACATACTACCCAAGCTGGTCTGTGGTAAGCTTATTAAGACAACCCGCAGCTGTAGGAGCTAGCGGACTTTGTCGCAGGAGCAACCCAGCAGgttggctaacttctctcttttctgtacagGATTTCTAGAGACTAAGAGCA #### Tdrd1_ID12205_6 --> 0 - 0 Original Alignment GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAG-AAAACCATGGAGATAAAG atggtaatttgtattgtatacttggaactctgttctctccttttctgcagGTTGACTGCCCCCCAGAAGTT---AGACAAATAACCGTAGGTGCTGAGAGAGTTATGTTCTCTGATCTAAGAACTCTTCAGCTGATGCAGAA-AATGGAGATAAAAgtgagttaaattgtctgctcctatcctcaatgtctcacatgtggtcctct Alignment from CESAR GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG atggtaatttgtattgtatacttggaactctgttctctccttttctgcagGTTGACTGCCCCCCAGAAGTT---AGACAAATAACCGTAGGTGCTGAGAGAGTTATGTTCTCTGATCTAAGAACTCTTCAGCTGATGCAGAAAATGGAGATAAAAgtgagttaaattgtctgctcctatcctcaatgtctcacatgtggtcctct Alignment from Spaln_aa2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG atggtaatttgtattgtatacttggaactctgttctctccttttctgcagGTTGACTGCCCCCCAGAAGTT---AGACAAATAACCGTAGGTGCTGAGAGAGTTATGTTCTCTGATCTAAGAACTCTTCAGCTGATGCAGAAAATGGAGATAAAAgtgagttaaattgtctgctcctatcctcaatgtctcacatgtggtcctct Alignment from Spaln_nt2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG atggtaatttgtattgtatacttggaactctgttctctccttttctgcagGTTGACTGCCCCCCAGAAGT---TAGACAAATAACCGTAGGTGCTGAGAGAGTTATGTTCTCTGATCTAAGAACTCTTCAGCTGATGCAGAAAATGGAGATAAAAgtgagttaaattgtctgctcctatcctcaatgtctcacatgtggtcctct Alignment from Pairagon GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG atggtaatttgtattgtatacttggaactctgttctctccttttctgcagGTTGACTGCCCCCCAGAAGT---TAGACAAATAACCGTAGGTGCTGAGAGAGTTATGTTCTCTGATCTAAGAACTCTTCAGCTGATGCAGAAAATGGAGATAAAAgtgagttaaattgtctgctcctatcctcaatgtctcacatgtggtcctct Alignment from Exonerate_protein2genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG atggtaatttgtattgtatacttggaactctgttctctccttttctgcagGTTGACTGCCCCCCAGAAGTT---AGACAAATAACCGTAGGTGCTGAGAGAGTTATGTTCTCTGATCTAAGAACTCTTCAGCTGATGCAGAAAATGGAGATAAAAgtgagttaaattgtctgctcctatcctcaatgtctcacatgtggtcctct Alignment from Exonerate_coding2genome atggtaatttgtattgtatacttggaactctgttctctccttttctgcaggttgactgccccccagaagttagacaaataaccgtaggtgctgagagagttatgttctctgatctaagaactcttcagctgatgcagaaaatggagataaaagtgagttaaattgtctgctcctatcctcaatgtctcacatgtggtcctct Alignment from GeneWise GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG atggtaatttgtattgtatacttggaactctgttctctccttttctgcagGTTGACTGCCCCCCAGAAGTT---AGACAAATAACCGTAGGTGCTGAGAGAGTTATGTTCTCTGATCTAAGAACTCTTCAGCTGATGCAGAAAATGGAGATAAAAgtgagttaaattgtctgctcctatcctcaatgtctcacatgtggtcctct #### Tdrd1_ID12218_19 --> 2 - 1 Original Alignment ccAGCCCTTCAGCAGAGCAGTGGAAG-ACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAg tggaagcagtgtttggtgtatgaggacaacatttattctcttttctgcagcaAGACCTTCAGCAGAACAGTGGAAACACAATGGAGT-ACCAGTGAATGAGAACATAGCAGCAACTGTGCTAGAAAGCATAAGCCCAGCCTTATTGTATGCTATCGCTAGTGAAATGGCCggtactataagagcttactgcacccatactgccctcttggtgaaaatgcaa Alignment from CESAR ccAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAg tggaagcagtgtttggtgtatgaggacaacatttattctcttttctgcagcaAGACCTTCAGCAGAACAGTGGAAACACAATGGAGTACCAGTGAATGAGAACATAGCAGCAACTGTGCTAGAAAGCATAAGCCCAGCCTTATTGTATGCTATCGCTAGTGAAATGGCCggtactataagagcttactgcacccatactgccctcttggtgaaaatgcaa Alignment from Spaln_aa2Genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG tggaagcagtgtttggtgtatgaggacaacatttattctcttttctgcagCAAGACCTTCAGCAGAACAGTGGAAACACAATGGAGTACCAGTGAATGAGAACATAGCAGCAACTGTGCTAGAAAGCATAAGCCCAGCCTTATTGTATGCTATCGCTAGTGAAATGGCCGgtactataagagcttactgcacccatactgccctcttggtgaaaatgcaa Alignment from Spaln_nt2Genome CCAGCCCTTCAGCAGAGCAGTGGAAG-ACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG tggaagcagtgtttggtgtatgaggacaacatttattctcttttctgcagCAAGACCTTCAGCAGAACAGTGGAAACACAATGG-AGTACCAGTGAATGAGAACATAGCAGCAACTGTGCTAGAAAGCATAAGCCCAGCCTTATTGTATGCTATCGCTAGTGAAATGGCCGgtactataagagcttactgcacccatactgccctcttggtgaaaatgcaa Alignment from Pairagon CCAGCCCTTCAGCAGAGCAGTGGAAG-ACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG tggaagcagtgtttggtgtatgaggacaacatttattctcttttctgcagCAAGACCTTCAGCAGAACAGTGGAAACACAATGGAG-TACCAGTGAATGAGAACATAGCAGCAACTGTGCTAGAAAGCATAAGCCCAGCCTTATTGTATGCTATCGCTAGTGAAATGGCCGgtactataagagcttactgcacccatactgccctcttggtgaaaatgcaa Alignment from Exonerate_protein2genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG tggaagcagtgtttggtgtatgaggacaacatttattctcttttctgcagCAAGACCTTCAGCAGAACAGTGGAAACACAATGGAGTACCAGTGAATGAGAACATAGCAGCAACTGTGCTAGAAAGCATAAGCCCAGCCTTATTGTATGCTATCGCTAGTGAAATGGCCGgtactataagagcttactgcacccatactgccctcttggtgaaaatgcaa Alignment from Exonerate_coding2genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG tggaagcagtgtttggtgtatgaggacaacatttattctcttttctgcagCAAGACCTTCAGCAGAACAGTGGAAACACAATGGAGTACCAGTGAATGAGAACATAGCAGCAACTGTGCTAGAAAGCATAAGCCCAGCCTTATTGTATGCTATCGCTAGTGAAATGGCCGgtactataagagcttactgcacccatactgccctcttggtgaaaatgcaa Alignment from GeneWise CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG tggaagcagtgtttggtgtatgaggacaacatttattctcttttctgcagCAAGACCTTCAGCAGAACAGTGGAAACACAATGGAGTACCAGTGAATGAGAACATAGCAGCAACTGTGCTAGAAAGCATAAGCCCAGCCTTATTGTATGCTATCGCTAGTGAAATGGCCGgtactataagagcttactgcacccatactgccctcttggtgaaaatgcaa #### Tectb_ID11563_6 --> 1 - 2 Original Alignment gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAG-TGGCAGCTCATCAATAAGgg aaattcaattttgtaatggtattgttttagtgatctgatttgccttgtaggTTCAAAGTGGTCTTGAATAGCTGCTGGGCTACCCCCTTGGCTGACTTCATGTACCCTTTACAGCTGGC-GCTTATCAATAAGgggtgagtaccaatgacaactacatgatgctggtatgtttcttggaccccca Alignment from CESAR gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGgg aaattcaattttgtaatggtattgttttagtgatctgatttgccttgtaggTTCAAAGTGGTCTTGAATAGCTGCTGGGCTACCCCCTTGGCTGACTTCATGTACCCTTTACAGCTGGCGCTTATCAATAAGgggtgagtaccaatgacaactacatgatgctggtatgtttcttggaccccca Alignment from Spaln_aa2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttagtgatctgatttgccttgtagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCTACCCCCTTGGCTGACTTCATGTACCCTTTACAGCTGGCGCTTATCAATAAGGGgtgagtaccaatgacaactacatgatgctggtatgtttcttggaccccca Alignment from Spaln_nt2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttagtgatctgatttgccttgtagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCTACCCCCTTGGCTGACTTCATGTACCCTTTACAGCTGGCGCTTATCAATAAGGGgtgagtaccaatgacaactacatgatgctggtatgtttcttggaccccca Alignment from Pairagon GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttagtgatctgatttgccttgtagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCTACCCCCTTGGCTGACTTCATGTACCCTTTACAGCTGGCGCTTATCAATAAGGGgtgagtaccaatgacaactacatgatgctggtatgtttcttggaccccca Alignment from Exonerate_protein2genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttagtgatctgatttgccttgtagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCTACCCCCTTGGCTGACTTCATGTACCCTTTACAGCTGGCGCTTATCAATAAGGGgtgagtaccaatgacaactacatgatgctggtatgtttcttggaccccca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttagtgatctgatttgccttgtagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCTACCCCCTTGGCTGACTTCATGTACCCTTTACAGCTGGCGCTTATCAATAAGGGgtgagtaccaatgacaactacatgatgctggtatgtttcttggaccccca #### Tjp2_ID5274_13 --> 2 - 2 Original Alignment tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAG-GTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag tattacttagccttcttgatggtagagccctcttctctctaccccaccagctTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGCGTCTTTC-AGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCaggtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from CESAR tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag tattacttagccttcttgatggtagagccctcttctctctaccccaccagctTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGCGTCTTTCAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCaggtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Spaln_aa2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGCGTCTTTCAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Spaln_nt2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAG-GTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGCGTCTTTC-AGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Pairagon TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAG-GTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGCGTCTTTC-AGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Exonerate_protein2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGCGTCTTTCAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGCGTCTTTCAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCA-ACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tttgcttcacagcaaggtgttgtcaaccttttctgttctttactacttagACTTTTTCATTGGGATATTGCCCTCACTGGAAAGT-GCTTGCAGTGGGCATGGAAAATAGCAACGTGGATGTATTGCATGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCTTGTCCCTCAAGTTTGCCCAATGCagtgaggatacactcaacatctggcattgcttgctgtgaaataaacttact Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tttgcttcacagcaaggtgttgtcaaccttttctgttctttactacttagACTTTTTCATTGGGATATTGCCCTCACTGGAAAGTGCTTGCAGTGGGCATGGAAAATAGCAACGTGGATGTATTGCATGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCTTGTCCCTCAAGTTTGCCCAATGCagtgaggatacactcaacatctggcattgcttgctgtgaaataaacttact Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcacagcaaggtgttgtcaaccttttctgttctttactacttagACTTTTTCATTGGGATATTGCCCTCACTGGAAAGTGCTTGCAGTGGGCATGGAAAATAGCAACGTGGATGTATTGCATGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCTTGTCCCTCAAGTTTGCCCAATGCAgtgaggatacactcaacatctggcattgcttgctgtgaaataaacttact Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCA-ACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcacagcaaggtgttgtcaaccttttctgttctttactacttagACTTTTTCATTGGGATATTGCCCTCACTGGAAAGT-GCTTGCAGTGGGCATGGAAAATAGCAACGTGGATGTATTGCATGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCTTGTCCCTCAAGTTTGCCCAATGCAgtgaggatacactcaacatctggcattgcttgctgtgaaataaacttact Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCC-AACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcacagcaaggtgttgtcaaccttttctgttctttactacttagACTTTTTCATTGGGATATTGCCCTCACTGGAAAGT-GCTTGCAGTGGGCATGGAAAATAGCAACGTGGATGTATTGCATGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCTTGTCCCTCAAGTTTGCCCAATGCAgtgaggatacactcaacatctggcattgcttgctgtgaaataaacttact Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcacagcaaggtgttgtcaaccttttctgttctttactacttagACTTTTTCATTGGGATATTGCCCTCACTGGAAAGTGCTTGCAGTGGGCATGGAAAATAGCAACGTGGATGTATTGCATGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCTTGTCCCTCAAGTTTGCCCAATGCAgtgaggatacactcaacatctggcattgcttgctgtgaaataaacttact Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcacagcaaggtgttgtcaaccttttctgttctttactacttagACTTTTTCATTGGGATATTGCCCTCACTGGAAAGTGCTTGCAGTGGGCATGGAAAATAGCAACGTGGATGTATTGCATGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCTTGTCCCTCAAGTTTGCCCAATGCAgtgaggatacactcaacatctggcattgcttgctgtgaaataaacttact Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcacagcaaggtgttgtcaaccttttctgttctttactacttagACTTTTTCATTGGGATATTGCCCTCACTGGAAAGTGCTTGCAGTGGGCATGGAAAATAGCAACGTGGATGTATTGCATGTCACCAAACCAGACAAATGTCAGTTGCATCTTCATGAGAGCTGTGTCTTGTCCCTCAAGTTTGCCCAATGCAgtgaggatacactcaacatctggcattgcttgctgtgaaataaacttact #### Tle4_ID3629_10 --> 0 - 0 Original Alignment GACAGTGATGGTGAGAAGAGTGATGAC-AACTTGGTAGTTGATGTGTCCAATGAG acagggggtcttttgtagcccccttctatcttctccctctctctttgaagGACAGTGATGGTGAGAAGACTGATGATCAACCTGG-AGTTGAGGTCTCTAATGAGgtaatgcagtcacacgttatcacacgggttggttgtctactgacttgttt Alignment from CESAR GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggtcttttgtagcccccttctatcttctccctctctctttgaagGACAGTGATGGTGAGAAGACTGATGATCAACCTGGAGTTGAGGTCTCTAATGAGgtaatgcagtcacacgttatcacacgggttggttgtctactgacttgttt Alignment from Spaln_aa2Genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggtcttttgtagcccccttctatcttctccctctctctttgaagGACAGTGATGGTGAGAAGACTGATGATCAACCTGGAGTTGAGGTCTCTAATGAGgtaatgcagtcacacgttatcacacgggttggttgtctactgacttgttt Alignment from Spaln_nt2Genome GACAGTGATGGTGAGAAGAGTGATGA-CAACTTGGTAGTTGATGTGTCCAATGAG acagggggtcttttgtagcccccttctatcttctccctctctctttgaagGACAGTGATGGTGAGAAGACTGATGATCAACCTGG-AGTTGAGGTCTCTAATGAGgtaatgcagtcacacgttatcacacgggttggttgtctactgacttgttt Alignment from Pairagon GACAGTGATGGTGAGAAGAGTGATGA-CAACTTGGTAGTTGATGTGTCCAATGAG acagggggtcttttgtagcccccttctatcttctccctctctctttgaagGACAGTGATGGTGAGAAGACTGATGATCAACCTGG-AGTTGAGGTCTCTAATGAGgtaatgcagtcacacgttatcacacgggttggttgtctactgacttgttt Alignment from Exonerate_protein2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggtcttttgtagcccccttctatcttctccctctctctttgaagGACAGTGATGGTGAGAAGACTGATGATCAACCTGGAGTTGAGGTCTCTAATGAGgtaatgcagtcacacgttatcacacgggttggttgtctactgacttgttt Alignment from Exonerate_coding2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggtcttttgtagcccccttctatcttctccctctctctttgaagGACAGTGATGGTGAGAAGACTGATGATCAACCTGGAGTTGAGGTCTCTAATGAGgtaatgcagtcacacgttatcacacgggttggttgtctactgacttgttt Alignment from GeneWise GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggtcttttgtagcccccttctatcttctccctctctctttgaagGACAGTGATGGTGAGAAGACTGATGATCAACCTGGAGTTGAGGTCTCTAATGAGgtaatgcagtcacacgttatcacacgggttggttgtctactgacttgttt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCC-AACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg cagttgggttggctcagtttctgttgacgttgaattgctttattttgaaggcCTTGACACCATCCCCATTGCCACTGGGAGAGATCTGCATGTGTCTGGGTGGTGGGGCATGGTACAGCATCCCCAACTACCTGG-AGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTggtaagctgatggctacaatgtctcccaggactgagtgcagtatgtggagg Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tatttgggttggctcagtttctgttgacgttgaattgctttattttgaaggcCTTGACACCATCCCCATTGCCACTGGGAGAGATCTGCATGTGTCTGGGTGGTGGGGCATGGTACAGCATCCCCAACTACCTGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTggtaagctgatggctacaatgtctcccaggactgagtgcagtatgtggagg Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG cagttgggttggctcagtttctgttgacgttgaattgctttattttgaagGCCTTGACACCATCCCCATTGCCACTGGGAGAGATCTGCATGTGTCTGGGTGGTGGGGCATGGTACAGCATCCCCAACTACCTGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaagctgatggctacaatgtctcccaggactgagtgcagtatgtggagg Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACA-CCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG cagttgggttggctcagtttctgttgacgttgaattgctttattttgaagGCCTTGACACCATCCCCATTGCCACTGGGAGAGATCTGCATGTGTCTGGGTGGTGGGGCATGGTACAGCATCCCCAACTACCT-GGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaagctgatggctacaatgtctcccaggactgagtgcagtatgtggagg Alignment from Pairagon ----------------------------------------------------CTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACA-CCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG CAGTTGGGTTGGCTCAGTTTCTGTTGACGTTGAATTGCTTTATTTTGAAGGCCTTGACACCATCCCCATTGCCACTGGGAGAGATCTGCATGTGTCTGGGTGGTGGGGCATGGTACAGCATCCCCAACTACCT-GGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaagctgatggctacaatgtctcccaggactgagtgcagtatgtggagg Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG cagttgggttggctcagtttctgttgacgttgaattgctttattttgaagGCCTTGACACCATCCCCATTGCCACTGGGAGAGATCTGCATGTGTCTGGGTGGTGGGGCATGGTACAGCATCCCCAACTACCTGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaagctgatggctacaatgtctcccaggactgagtgcagtatgtggagg Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG cagttgggttggctcagtttctgttgacgttgaattgctttattttgaagGCCTTGACACCATCCCCATTGCCACTGGGAGAGATCTGCATGTGTCTGGGTGGTGGGGCATGGTACAGCATCCCCAACTACCTGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaagctgatggctacaatgtctcccaggactgagtgcagtatgtggagg Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG cagttgggttggctcagtttctgttgacgttgaattgctttattttgaagGCCTTGACACCATCCCCATTGCCACTGGGAGAGATCTGCATGTGTCTGGGTGGTGGGGCATGGTACAGCATCCCCAACTACCTGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCATGTGgtaagctgatggctacaatgtctcccaggactgagtgcagtatgtggagg #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACT-CTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtgtgtgtactgtccctgagcttctcatccctcctcctcaaggtTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTTCTGCCACTGTCCTTGGCGACCACTCCTCA-CAGGTTTGTCTTCTGCCTACTACTCTACACAAAAGCTTTGGTAACCCCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAggtaagttgggtgcccagtagatctcagaaggtgtggacctagtgaaggtg Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtgtgtgtactgtccctgagcttctcatccctcctcctcaaggtTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTTCTGCCACTGTCCTTGGCGACCACTCCTCACAGGTTTGTCTTCTGCCTACTACTCTACACAAAAGCTTTGGTAACCCCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAggtaagttgggtgcccagtagatctcagaaggtgtggacctagtgaaggtg Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtgtgtgtactgtccctgagcttctcatccctcctcctcaagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTTCTGCCACTGTCCTTGGCGACCACTCCTCACAGGTTTGTCTTCTGCCTACTACTCTACACAAAAGCTTTGGTAACCCCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtaagttgggtgcccagtagatctcagaaggtgtggacctagtgaaggtg Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtgtgtgtactgtccctgagcttctcatccctcctcctcaagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTTCTGCCACTGTCCTTGGCGACCACTCCTCACAGGTTTGTCTTCTGCCTACTACTCTACACAAAAGCTTTGGTAACCCCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtaagttgggtgcccagtagatctcagaaggtgtggacctagtgaaggtg Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtgtgtgtactgtccctgagcttctcatccctcctcctcaagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTTCTGCCACTGTCCTTGGCGACCACTCCTCACAGGTTTGTCTTCTGCCTACTACTCTACACAAAAGCTTTGGTAACCCCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtaagttgggtgcccagtagatctcagaaggtgtggacctagtgaaggtg Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtgtgtgtactgtccctgagcttctcatccctcctcctcaagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTTCTGCCACTGTCCTTGGCGACCACTCCTCACAGGTTTGTCTTCTGCCTACTACTCTACACAAAAGCTTTGGTAACCCCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtaagttgggtgcccagtagatctcagaaggtgtggacctagtgaaggtg Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtgtgtgtactgtccctgagcttctcatccctcctcctcaagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTTCTGCCACTGTCCTTGGCGACCACTCCTCACAGGTTTGTCTTCTGCCTACTACTCTACACAAAAGCTTTGGTAACCCCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtaagttgggtgcccagtagatctcagaaggtgtggacctagtgaaggtg Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtgtgtgtactgtccctgagcttctcatccctcctcctcaagGTTACCAGGCTGTTGTTTTGTCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGTTCCCCCTTGCAGGATTACCTGGAATGCTTCTGCCACTGTCCTTGGCGACCACTCCTCACAGGTTTGTCTTCTGCCTACTACTCTACACAAAAGCTTTGGTAACCCCTGCCTTAGCTTTGAACTCCGGGGGAAACTCAGgtaagttgggtgcccagtagatctcagaaggtgtggacctagtgaaggtg #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGC-CTGCGCTACCCTATTAATg tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCCTTGC-ATACCCTATTAATggtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCCTTGCATACCCTATTAATggtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCCTTGCATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCCTTGCATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Pairagon GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCCTTGCATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCCTTGCATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCCTTGCATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from GeneWise -----------------------------------------------------GCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG TCCCCCTTGATATGACCTATTTTGTGTCTAAAAGCGTTGGTTTTCCTCAGGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCCTTGCATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTG-TTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG cgagggcattactcacactttaatccaatattattttttctttcttttaggtGTTGCAGCTTTGTTAATACTGCTACCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACTTGCCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTACTTCATCT-GCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgtgcgacctcccccttgatatgacctattttgtgtctacatttcattt Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG cgagggcattactcacactttaatccaatattattttttctttcttttaggtGTTGCAGCTTTGTTAATACTGCTACCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACTTGCCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTACTTCATCTGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgtgcgacctcccccttgatatgacctattttgtgtctaaaagcgttgg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG cgagggcattactcacactttaatccaatattattttttctttcttttagGTGTTGCAGCTTTGTTAATACTGCTACCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACTTGCCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTACTTCATCTGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgtgcgacctcccccttgatatgacctattttgtgtctacatttcattt Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTG-TTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG cgagggcattactcacactttaatccaatattattttttctttcttttagGTGTTGCAGCTTTGTTAATACTGCTACCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACTTGCCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTACTTCATCT-GCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgtgcgacctcccccttgatatgacctattttgtgtctacatttcattt Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTG-TTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAGGTG----------------------------------------------- cgagggcattactcacactttaatccaatattattttttctttcttttagGTGTTGCAGCTTTGTTAATACTGCTACCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACTTGCCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTACTTCATCT-GCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGGTGTGCGACCTCCCCCTTGATATGACCTATTTTGTGTCTACATTTCATTT Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG cgagggcattactcacactttaatccaatattattttttctttcttttagGTGTTGCAGCTTTGTTAATACTGCTACCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACTTGCCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTACTTCATCTGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgtgcgacctcccccttgatatgacctattttgtgtctacatttcattt Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG cgagggcattactcacactttaatccaatattattttttctttcttttagGTGTTGCAGCTTTGTTAATACTGCTACCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACTTGCCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTACTTCATCTGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGgtgtgcgacctcccccttgatatgacctattttgtgtctacatttcattt Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAGGTG----------------------------------------------- cgagggcattactcacactttaatccaatattattttttctttcttttagGTGTTGCAGCTTTGTTAATACTGCTACCAGCTACCATGTCTCACTACCTCCTTGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCGGCATACTTGCCTGGTCTGGAAGAACTATGGAGCCCATGGGCCCTGCTTCTCCTACTTCATCTGCTTGGTCTGCAGGTGGCACTCTATCTGCTGCCTGCATGCAGGGTGTGCGACCTCCCCCTTGATATGACCTATTTTGTGTCTACATTTCATTT #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCATGGACA-CCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagcCGCTCTGAAGCACAGAAGACTGCATGGACACCCTTTGGGAA-TGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagcCGCTCTGAAGCACAGAAGACTGCATGGACACCCTTTGGGAATGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCCTTTGGGAATGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCCTTTGGGAATGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCCTTTGGGAATGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCCTTTGGGAATGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCCTTTGGGAATGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCCTTTGGGAATGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGC-AATTCCATCATCTCCTTGAACCTTACAATTag ttggtttactttgtggtaggtcattgattaatcaatttgtctttcttaagaGGCTCCATAGGGCTCCGGATTGCTCTGGCCACCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCGCTTGCATAGTCCGATTTGGCACAAATTCTTTCTGTCAACT-CATTATCTCTCTGAATCTGACAATAaggtaagatgaagaataggtataggtgtgctgagagttccaaactagattta Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag ttggtttactttgtggtaggtcattgattaatcaatttgtctttcttaagaGGCTCCATAGGGCTCCGGATTGCTCTGGCCACCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCGCTTGCATAGTCCGATTTGGCACAAATTCTTTCTGTCAACTCATTATCTCTCTGAATCTGACAATAaggtaagatgaagaataggtataggtgtgctgagagttccaaactagattta Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ttggtttactttgtggtaggtcattgattaatcaatttgtctttcttaagAGGCTCCATAGGGCTCCGGATTGCTCTGGCCACCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCGCTTGCATAGTCCGATTTGGCACAAATTCTTTCTGTCAACTCATTATCTCTCTGAATCTGACAATAAGgtaagatgaagaataggtataggtgtgctgagagttccaaactagattta Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ttggtttactttgtggtaggtcattgattaatcaatttgtctttcttaagAGGCTCCATAGGGCTCCGGATTGCTCTGGCCACCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCGCTTGCATAGTCCGATTTGGCACAAATTCTTTCTGTCAACTCATTATCTCTCTGAATCTGACAATAAGgtaagatgaagaataggtataggtgtgctgagagttccaaactagattta Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ttggtttactttgtggtaggtcattgattaatcaatttgtctttcttaagAGGCTCCATAGGGCTCCGGATTGCTCTGGCCACCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCGCTTGCATAGTCCGATTTGGCACAAATTCTTTCTGTCAACTCATTATCTCTCTGAATCTGACAATAAGgtaagatgaagaataggtataggtgtgctgagagttccaaactagattta Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ttggtttactttgtggtaggtcattgattaatcaatttgtctttcttaagAGGCTCCATAGGGCTCCGGATTGCTCTGGCCACCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCGCTTGCATAGTCCGATTTGGCACAAATTCTTTCTGTCAACTCATTATCTCTCTGAATCTGACAATAAGgtaagatgaagaataggtataggtgtgctgagagttccaaactagattta Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ttggtttactttgtggtaggtcattgattaatcaatttgtctttcttaagAGGCTCCATAGGGCTCCGGATTGCTCTGGCCACCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCGCTTGCATAGTCCGATTTGGCACAAATTCTTTCTGTCAACTCATTATCTCTCTGAATCTGACAATAAGgtaagatgaagaataggtataggtgtgctgagagttccaaactagattta Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ttggtttactttgtggtaggtcattgattaatcaatttgtctttcttaagAGGCTCCATAGGGCTCCGGATTGCTCTGGCCACCTCAGCTACAGCTATCTTCCTGATTTTAGTATCCGCTTGCATAGTCCGATTTGGCACAAATTCTTTCTGTCAACTCATTATCTCTCTGAATCTGACAATAAGgtaagatgaagaataggtataggtgtgctgagagttccaaactagattta #### Tmem180_ID9861_3 --> 1 - 2 Original Alignment gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCC-TTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcataggAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTCTTGCTAG-TGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTgggtaagacactacttcagctcaagctcccatggccaatacaactatgatct Alignment from CESAR gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcataggAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTCTTGCTAGTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTgggtaagacactacttcagctcaagctcccatggccaatacaactatgatcc Alignment from Spaln_aa2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTCTTGCTAGTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatct Alignment from Spaln_nt2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGC-CTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTCTTGCTAG-TGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatct Alignment from Pairagon GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGC-CTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTCTTGCTAG-TGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatct Alignment from Exonerate_protein2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTCTTGCTAGTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatct Alignment from Exonerate_coding2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTCTTGCTAGTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatct Alignment from GeneWise GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTCTTGCTAGTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatct #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTG-AACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg tgaggtagagcagctcatcttcttaaatctcaatctctgctcccttgcaggACCCAGACATGCACTAGCAGTAGCCTTTCTCCCCCTAAGATTGGCCATCTGCAACT-CAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACGGTTACGGAAAATGCTTGATggtaagaacttaatgggtctatgtaggtggagcgcagcctgcagcccattc Alignment from CESAR gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg tgaggtagagcagctcatcttcttaaatctcaatctctgctcccttgcaggACCCAGACATGCACTAGCAGTAGCCTTTCTCCCCCTAAGATTGGCCATCTGCAACTCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACGGTTACGGAAAATGCTTGATggtaagaacttaatgggtctatgtaggtggagcgcagcctgcagcccattc Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgaggtagagcagctcatcttcttaaatctcaatctctgctcccttgcagGACCCAGACATGCACTAGCAGTAGCCTTTCTCCCCCTAAGATTGGCCATCTGCAACTCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACGGTTACGGAAAATGCTTGATGgtaagaacttaatgggtctatgtaggtggagcgcagcctgcagcccattc Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgaggtagagcagctcatcttcttaaatctcaatctctgctcccttgcagGACCCAGACATGCACTAGCAGTAGCCTTTCTCCCCCTAAGATTGGCCATCTGCAACTCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACGGTTACGGAAAATGCTTGATGgtaagaacttaatgggtctatgtaggtggagcgcagcctgcagcccattc Alignment from Pairagon GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgaggtagagcagctcatcttcttaaatctcaatctctgctcccttgcagGACCCAGACATGCACTAGCAGTAGCCTTTCTCCCCCTAAGATTGGCCATCTGCAACTCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACGGTTACGGAAAATGCTTGATGgtaagaacttaatgggtctatgtaggtggagcgcagcctgcagcccattc Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgaggtagagcagctcatcttcttaaatctcaatctctgctcccttgcagGACCCAGACATGCACTAGCAGTAGCCTTTCTCCCCCTAAGATTGGCCATCTGCAACTCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACGGTTACGGAAAATGCTTGATGgtaagaacttaatgggtctatgtaggtggagcgcagcctgcagcccattc Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgaggtagagcagctcatcttcttaaatctcaatctctgctcccttgcagGACCCAGACATGCACTAGCAGTAGCCTTTCTCCCCCTAAGATTGGCCATCTGCAACTCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACGGTTACGGAAAATGCTTGATGgtaagaacttaatgggtctatgtaggtggagcgcagcctgcagcccattc Alignment from GeneWise --------ACCAAGTCTGTGAAAATCCTAATGGACAGGACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG tgaggtagagcagCTCATCTTCTTAAATCTCAATCTCTGCTCCCTTGCAGGACCCAGACATGCACTAGCAGTAGCCTTTCTCCCCCTAAGATTGGCCATCTGCAACTCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACGGTTACGGAAAATGCTTGATGgtaagaacttaatgggtctatgtaggtggagcgcagcctgcagcccattc #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCC-CTGGAGACACCA---CAA------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCAC------TTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gtgtctatgttagagaacgtcttgctgcgttcttgttgtcaataatctagGTCCCTAAGTTGGAGCTTACGCCCCCTGGACA-CCCACAACAAGCCTTGCCCCTGCCTCTAGCATTAGTTCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCA---GATCCAGGCACCATCAGTggtaccctctacttaccctaccatgctgcattgatagaagacacctcactt Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---GCCCTGCCCTTG------ACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACA------CACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gtgtctatgttagagaacgtcttgctgcgttcttgttgtcaataatctagGTCCCTAAGTTGGAGCTTACGCCCCCTGGACACCCACAACAAGCCTTGCCCCTGCCTCTAGCATTAGTTCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCA---GATCCAGGCACCATCAGTggtaccctctacttaccctaccatgctgcattgatagaagacacctcactt Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACA------CACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gtgtctatgttagagaacgtcttgctgcgttcttgttgtcaataatctagGTCCCTAAGTTGGAGCTTACGCCCCCTGGACACCCACAACAAGCCTTGCCCCTGCCTCTAGCATTAGTTCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCA---GATCCAGGCACCATCAGTGgtaccctctacttaccctaccatgctgcattgatagaagacacctcactt Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCC-TGGAGAC--ACCACAAGCCCTGCCCTTGACACTAG------TCCATGGTACATTCTGGA---AGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCA-CTTG-----GCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gtgtctatgttagagaacgtcttgctgcgttcttgttgtcaataatctagGTCCCTAAGTTGGAGCTTACGCCCCCTGGACACCCACAACAAGCCTTGCCCCTGCCTCTAGCATTAGTTCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGG---GTCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCC---AGATCCAGGCACCATCAGTGgtaccctctacttaccctaccatgctgcattgatagaagacacctcactt Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCC-CTGGAGA--CACCACAAGCCCTGCCCTTG------ACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTG----------------GCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gtgtctatgttagagaacgtcttgctgcgttcttgttgtcaataatctagGTCCCTAAGTTGGAGCTTACGCCCCCTGGACACCCACAACAAGCCTTGCCCCTGCCTCTAGCATTAGTTCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGG---GTCACATCAAGGAAGG----------ACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCC---AGATCCAGGCACCATCAGTGgtaccctctacttaccctaccatgctgcattgatagaagacacctcactt Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAA---------GCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACA------CACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gtgtctatgttagagaacgtcttgctgcgttcttgttgtcaataatctagGTCCCTAAGTTGGAGCTTACGCCCCCTGGACACCCACAACAAGCCTTGCCCCTGCCTCTAGCATTAGTTCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCA---GATCCAGGCACCATCAGTGgtaccctctacttaccctaccatgctgcattgatagaagacacctcactt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCC---------CTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACA------CACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gtgtctatgttagagaacgtcttgctgcgttcttgttgtcaataatctagGTCCCTAAGTTGGAGCTTACGCCCCCTGGACACCCACAACAAGCCTTGCCCCTGCCTCTAGCATTAGTTCATGGCACATTCTGGACAAATCACTGGCCGTCCATTTTGCTCAAGGGG---TCACATCAAGGAAGGACTTGCAATCATCTTGCTCTTGCTTCAGGATTGCCA---GATCCAGGCACCATCAGTGgtaccctctacttaccctaccatgctgcattgatagaagacacctcactt #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAG-AGCACCCCCCGGAAGCACag aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAATTGGCAA------CAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAACAGCA-TCCCCAGAAGCACaggtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAATTGGCAA------CAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAACAGCATCCCCAGAAGCACaggtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAATTGGCAA------CAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAACAGCATCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Spaln_nt2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAG-AGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAATTGGC------AACAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAACAGCA-TCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Pairagon TAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagactaatgcctgtcttacaggaaattggcaacaggttttatctggactaggtcTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAACAGCATCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Exonerate_protein2genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAAT------TGGCAACAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAACAGCATCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Exonerate_coding2genome aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagactaatgcctgtcttacaggaaattggcaacaggttttatctggactaggtctagatgatgatcagctattagctgaggcaggtattgctgaacagcatccccagaagcacaggtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctag---ACTAATGCCTGTCTTACAGGAAAT------TGGCAACAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAACAGCATCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc #### Ubxn1_ID2440_4 --> 2 - 2 Original Alignment gcTCTGGGTCTGCTGCTGGAGAA-AGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGag gtaattattaggagcgcatatagcaaagcaattttctttttttgttttaggcTCTGGTTCAACCGCTGGGAAACAGCAGGCCAA-TCTAACTGAAGAGGAAAGGAGAGAACAGACTAGGaggtacgtgcaaggaaggttgacagccccctgtcgaagttactttttcagaa Alignment from CESAR gcTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGag gtgagtattaggagcgcatatagcaaagcaattttctttttttgttttaggcTCTGGTTCAACCGCTGGGAAACAGCAGGCCAATCTAACTGAAGAGGAAAGGAGAGAACAGACTAGGaggtacgtgcaaggaaggttgacagccccctgtcgaagttactttttcagaa Alignment from Spaln_aa2Genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG gtaattattaggagcgcatatagcaaagcaattttctttttttgttttagGCTCTGGTTCAACCGCTGGGAAACAGCAGGCCAATCTAACTGAAGAGGAAAGGAGAGAACAGACTAGGAGgtacgtgcaaggaaggttgacagccccctgtcgaagttactttttcagaa Alignment from Spaln_nt2Genome GCTCTGGGTCTGCTGCTGGAGAA-AGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG gtaattattaggagcgcatatagcaaagcaattttctttttttgttttagGCTCTGGTTCAACCGCTGGGAAACAGCAG-GCCAATCTAACTGAAGAGGAAAGGAGAGAACAGACTAGGAGgtacgtgcaaggaaggttgacagccccctgtcgaagttactttttcagaa Alignment from Pairagon GCTCTGGGTCTGCTGCTGGAGAA-AGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG gtaattattaggagcgcatatagcaaagcaattttctttttttgttttagGCTCTGGTTCAACCGCTGGGAAACAGCAGGCCAA-TCTAACTGAAGAGGAAAGGAGAGAACAGACTAGGAGgtacgtgcaaggaaggttgacagccccctgtcgaagttactttttcagaa Alignment from Exonerate_protein2genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG gtaattattaggagcgcatatagcaaagcaattttctttttttgttttagGCTCTGGTTCAACCGCTGGGAAACAGCAGGCCAATCTAACTGAAGAGGAAAGGAGAGAACAGACTAGGAGgtacgtgcaaggaaggttgacagccccctgtcgaagttactttttcagaa Alignment from Exonerate_coding2genome GCTCT-----GGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAGAATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAG GTAATTATTAGGAGCGCATATAGCAAAGCAATTTTCTTTTTTTGTTTTAGGCTCTGGTTCAACCGCTGGGAAACAGCAGGCCAATCTAACTGAAGAGGAAAGGAGAGAACAGACTAGGAGgtacgtgcaaggaaggttgacagccccctgtcgaagttactttttcagaa Alignment from GeneWise GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG gtaattattaggagcgcatatagcaaagcaattttctttttttgttttagGCTCTGGTTCAACCGCTGGGAAACAGCAGGCCAATCTAACTGAAGAGGAAAGGAGAGAACAGACTAGGAGgtacgtgcaaggaaggttgacagccccctgtcgaagttactttttcagaa #### Ubxn1_ID2444_8 --> 0 - 1 Original Alignment GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCT-GTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg acactacagaaaatgccactcactggtgcgtttcttttcctcttctccagGTTAGGCTGCCTGATGTCACTTCACTTACCCAGACTTTCCGGATCCAGGAAGAGTTGGCAGCTCGTGAGGC-TTATGTAGAGCTCCATCACGGTGAGGAACCTGGACAGGATCAGGACCCTGTACAATTGCTCAGCGGATTCCCCAGACGGGCTTTCTCTGAAGCTGACATGGAGCGGCCTTTACAGAGACTGggtaaaatttgtattcttacatttatgcacattgtcttgaggcacatgctg Alignment from CESAR GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg acactacagaaaatgccactcactggtgcgtttcttttcctcttctccagGTTAGGCTGCCTGATGTCACTTCACTTACCCAGACTTTCCGGATCCAGGAAGAGTTGGCAGCTCGTGAGGCTTATGTAGAGCTCCATCACGGTGAGGAACCTGGACAGGATCAGGACCCTGTACAATTGCTCAGCGGATTCCCCAGACGGGCTTTCTCTGAAGCTGACATGGAGCGGCCTTTACAGAGACTGggtaaaatttgtattcttacatttatgcacattgtcttgaggcacatgctg Alignment from Spaln_aa2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG acactacagaaaatgccactcactggtgcgtttcttttcctcttctccagGTTAGGCTGCCTGATGTCACTTCACTTACCCAGACTTTCCGGATCCAGGAAGAGTTGGCAGCTCGTGAGGCTTATGTAGAGCTCCATCACGGTGAGGAACCTGGACAGGATCAGGACCCTGTACAATTGCTCAGCGGATTCCCCAGACGGGCTTTCTCTGAAGCTGACATGGAGCGGCCTTTACAGAGACTGGgtaaaatttgtattcttacatttatgcacattgtcttgaggcacatgctg Alignment from Spaln_nt2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCT-GTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG acactacagaaaatgccactcactggtgcgtttcttttcctcttctccagGTTAGGCTGCCTGATGTCACTTCACTTACCCAGACTTTCCGGATCCAGGAAGAGTTGGCAGCTCGTGAGGCT-TATGTAGAGCTCCATCACGGTGAGGAACCTGGACAGGATCAGGACCCTGTACAATTGCTCAGCGGATTCCCCAGACGGGCTTTCTCTGAAGCTGACATGGAGCGGCCTTTACAGAGACTGGgtaaaatttgtattcttacatttatgcacattgtcttgaggcacatgctg Alignment from Pairagon GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCT-GTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG acactacagaaaatgccactcactggtgcgtttcttttcctcttctccagGTTAGGCTGCCTGATGTCACTTCACTTACCCAGACTTTCCGGATCCAGGAAGAGTTGGCAGCTCGTGAGGCT-TATGTAGAGCTCCATCACGGTGAGGAACCTGGACAGGATCAGGACCCTGTACAATTGCTCAGCGGATTCCCCAGACGGGCTTTCTCTGAAGCTGACATGGAGCGGCCTTTACAGAGACTGGgtaaaatttgtattcttacatttatgcacattgtcttgaggcacatgctg Alignment from Exonerate_protein2genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG acactacagaaaatgccactcactggtgcgtttcttttcctcttctccagGTTAGGCTGCCTGATGTCACTTCACTTACCCAGACTTTCCGGATCCAGGAAGAGTTGGCAGCTCGTGAGGCTTATGTAGAGCTCCATCACGGTGAGGAACCTGGACAGGATCAGGACCCTGTACAATTGCTCAGCGGATTCCCCAGACGGGCTTTCTCTGAAGCTGACATGGAGCGGCCTTTACAGAGACTGGgtaaaatttgtattcttacatttatgcacattgtcttgaggcacatgctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG acactacagaaaatgccactcactggtgcgtttcttttcctcttctccagGTTAGGCTGCCTGATGTCACTTCACTTACCCAGACTTTCCGGATCCAGGAAGAGTTGGCAGCTCGTGAGGCTTATGTAGAGCTCCATCACGGTGAGGAACCTGGACAGGATCAGGACCCTGTACAATTGCTCAGCGGATTCCCCAGACGGGCTTTCTCTGAAGCTGACATGGAGCGGCCTTTACAGAGACTGGgtaaaatttgtattcttacatttatgcacattgtcttgaggcacatgctg #### Uhrf2_ID6376_7 --> 1 - 0 Original Alignment gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGA-GAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cagaggatcgagttattcttattgaagttctctgtttctctggcctccaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGACGAGAGGC-AAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagtgaatccttacactattaccaccacaatgtcagcagttcaaaaag Alignment from CESAR gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cagaggatcgagttattcttattgaagttctctgtttctctggcctccaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGACGAGAGGCAAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagtgaatccttacactattaccaccacaatgtcagcagttcaaaaag Alignment from Spaln_aa2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cagaggatcgagttattcttattgaagttctctgtttctctggcctccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGACGAGAGGCAAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagtgaatccttacactattaccaccacaatgtcagcagttcaaaaag Alignment from Spaln_nt2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGA-GAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cagaggatcgagttattcttattgaagttctctgtttctctggcctccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGACGAGAGGC-AAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagtgaatccttacactattaccaccacaatgtcagcagttcaaaaag Alignment from Pairagon GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGA-GAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cagaggatcgagttattcttattgaagttctctgtttctctggcctccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGACGAGAGGC-AAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagtgaatccttacactattaccaccacaatgtcagcagttcaaaaag Alignment from Exonerate_protein2genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cagaggatcgagttattcttattgaagttctctgtttctctggcctccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGACGAGAGGCAAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagtgaatccttacactattaccaccacaatgtcagcagttcaaaaag Alignment from Exonerate_coding2genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cagaggatcgagttattcttattgaagttctctgtttctctggcctccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGACGAGAGGCAAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagtgaatccttacactattaccaccacaatgtcagcagttcaaaaag Alignment from GeneWise GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cagaggatcgagttattcttattgaagttctctgtttctctggcctccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGACGAGAGGCAAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagtgaatccttacactattaccaccacaatgtcagcagttcaaaaag #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAG-CTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCCTGGGGGAGA-GTCCCTGGAAGAACACAGCCAATGTGAATGCaggtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCCTGGGGGAGAGTCCCTGGAAGAACACAGCCAATGTGAATGCaggtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCCTGGGGGAGAGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCCTGGGGGAGAGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAG-CTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCCTGGGGGAGA-GTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCCTGGGGGAGAGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCCTGGGGGAGAGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCCTGGGGGAGAGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg #### Vldlr_ID5808_7 --> 2 - 1 Original Alignment tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGC-AGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc tcccagaagagtgagagcttcggactttgattaactttctttctttctagttAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGTAAAGTATGTGATCAAGAACAAGACTGCCAGAGATT-GAGTGATGAACCTCTGAAGGAATGCcgtgagcgaggggaatcaaaatttgtttaacagtgtgcatcctgaccgact Alignment from CESAR tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc tcccagaagagtgagagcttcggactttgattaactttctttctttctagttAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGTAAAGTATGTGATCAAGAACAAGACTGCCAGAGATTGAGTGATGAACCTCTGAAGGAATGCcgtgagcgaggggaatcaaaatttgtttaacagtgtgcatcctgaccgact Alignment from Spaln_aa2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tcccagaagagtgagagcttcggactttgattaactttctttctttctagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGTAAAGTATGTGATCAAGAACAAGACTGCCAGAGATTGAGTGATGAACCTCTGAAGGAATGCCgtgagcgaggggaatcaaaatttgtttaacagtgtgcatcctgaccgact Alignment from Spaln_nt2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGC-AGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tcccagaagagtgagagcttcggactttgattaactttctttctttctagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGTAAAGTATGTGATCAAGAACAAGACTGCCAGAGA-TTGAGTGATGAACCTCTGAAGGAATGCCgtgagcgaggggaatcaaaatttgtttaacagtgtgcatcctgaccgact Alignment from Pairagon TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTG-CAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tcccagaagagtgagagcttcggactttgattaactttctttctttctagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGTAAAGTATGTGATCAAGAACAAGACTGCCAGAGATT-GAGTGATGAACCTCTGAAGGAATGCCgtgagcgaggggaatcaaaatttgtttaacagtgtgcatcctgaccgact Alignment from Exonerate_protein2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tcccagaagagtgagagcttcggactttgattaactttctttctttctagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGTAAAGTATGTGATCAAGAACAAGACTGCCAGAGATTGAGTGATGAACCTCTGAAGGAATGCCgtgagcgaggggaatcaaaatttgtttaacagtgtgcatcctgaccgact Alignment from Exonerate_coding2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tcccagaagagtgagagcttcggactttgattaactttctttctttctagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGTAAAGTATGTGATCAAGAACAAGACTGCCAGAGATTGAGTGATGAACCTCTGAAGGAATGCCgtgagcgaggggaatcaaaatttgtttaacagtgtgcatcctgaccgact Alignment from GeneWise TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tcccagaagagtgagagcttcggactttgattaactttctttctttctagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGTAAAGTATGTGATCAAGAACAAGACTGCCAGAGATTGAGTGATGAACCTCTGAAGGAATGCCgtgagcgaggggaatcaaaatttgtttaacagtgtgcatcctgaccgact #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGAC-ATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atggcacttttcaagtaaatagacttttgacttatttctcctccctctaggcAAAGAGCCAAGCCTGATATTCACTAATCGGAGAGACCATCAGAA-GATTGGCTTAGAAAGAAAAGAGTATATCCAACTCGTAGACCAATTGAGAAACACAGTGGCTCTTGATGCAGAGATTGCAGCTCAAAAGCTATTTTGGGCTGATTTTAGCCAGCAGGCTATTTTTaggtgggttaaatcagcctgtccagatgtctgggaagcatgcttaacggcat Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atggcacttttcaagtaaatagacttttgacttatttctcctccctctaggcAAAGAGCCAAGCCTGATATTCACTAATCGGAGAGACCATCAGAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTCGTAGACCAATTGAGAAACACAGTGGCTCTTGATGCAGAGATTGCAGCTCAAAAGCTATTTTGGGCTGATTTTAGCCAGCAGGCTATTTTTaggtgggttaaatcagcctgtccagatgtctgggaagcatgcttaacggcat Alignment from Spaln_aa2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaatagacttttgacttatttctcctccctctagGCAAAGAGCCAAGCCTGATATTCACTAATCGGAGAGACCATCAGAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTCGTAGACCAATTGAGAAACACAGTGGCTCTTGATGCAGAGATTGCAGCTCAAAAGCTATTTTGGGCTGATTTTAGCCAGCAGGCTATTTTTAGgtgggttaaatcagcctgtccagatgtctgggaagcatgcttaacggcat Alignment from Spaln_nt2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaatagacttttgacttatttctcctccctctagGCAAAGAGCCAAGCCTGATATTCACTAATCGGAGAGACCATCAGAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTCGTAGACCAATTGAGAAACACAGTGGCTCTTGATGCAGAGATTGCAGCTCAAAAGCTATTTTGGGCTGATTTTAGCCAGCAGGCTATTTTTAGgtgggttaaatcagcctgtccagatgtctgggaagcatgcttaacggcat Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaatagacttttgacttatttctcctccctctagGCAAAGAGCCAAGCCTGATATTCACTAATCGGAGAGACCATCAGAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTCGTAGACCAATTGAGAAACACAGTGGCTCTTGATGCAGAGATTGCAGCTCAAAAGCTATTTTGGGCTGATTTTAGCCAGCAGGCTATTTTTAGgtgggttaaatcagcctgtccagatgtctgggaagcatgcttaacggcat Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaatagacttttgacttatttctcctccctctagGCAAAGAGCCAAGCCTGATATTCACTAATCGGAGAGACCATCAGAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTCGTAGACCAATTGAGAAACACAGTGGCTCTTGATGCAGAGATTGCAGCTCAAAAGCTATTTTGGGCTGATTTTAGCCAGCAGGCTATTTTTAGgtgggttaaatcagcctgtccagatgtctgggaagcatgcttaacggcat Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaatagacttttgacttatttctcctccctctagGCAAAGAGCCAAGCCTGATATTCACTAATCGGAGAGACCATCAGAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTCGTAGACCAATTGAGAAACACAGTGGCTCTTGATGCAGAGATTGCAGCTCAAAAGCTATTTTGGGCTGATTTTAGCCAGCAGGCTATTTTTAGgtgggttaaatcagcctgtccagatgtctgggaagcatgcttaacggcat Alignment from GeneWise CCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atggcacttttcaagtaaatagacttttgacttatttctcctccctctaggcaaagagCCAAGCCTGATATTCACTAATCGGAGAGACCATCAGAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTCGTAGACCAATTGAGAAACACAGTGGCTCTTGATGCAGAGATTGCAGCTCAAAAGCTATTTTGGGCTGATTTTAGCCAGCAGGCTATTTTTAGgtgggttaaatcagcctgtccagatgtctgggaagcatgcttaacggcat #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgattaattttcttcctttttataggtGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGGAAAGAAAAGAAGCAATGAATAAGCGGCCCAG-TGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTGGTCTCTgtatgtcctcactgtgtcctgaattacatagaaggtctgttgcattcata Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgattaattttcttcctttttataggtGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGGAAAGAAAAGAAGCAATGAATAAGCGGCCCAGTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTGGTCTCTgtatgtcctcactgtgtcctgaattacatagaaggtctgttgcattcata Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgattaattttcttcctttttatagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGGAAAGAAAAGAAGCAATGAATAAGCGGCCCAGTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTGGTCTCTgtatgtcctcactgtgtcctgaattacatagaaggtctgttgcattcata Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgattaattttcttcctttttatagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGGAAAGAAAAGAAGCAATGAATAAGCGGCCCAGTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTGGTCTCTgtatgtcctcactgtgtcctgaattacatagaaggtctgttgcattcata Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgattaattttcttcctttttatagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGGAAAGAAAAGAAGCAATGAATAAGCGGCCCAGTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTGGTCTCTgtatgtcctcactgtgtcctgaattacatagaaggtctgttgcattcata Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgattaattttcttcctttttatagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGGAAAGAAAAGAAGCAATGAATAAGCGGCCCAGTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTGGTCTCTgtatgtcctcactgtgtcctgaattacatagaaggtctgttgcattcata Alignment from Exonerate_coding2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgattaattttcttcctttttatagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGGAAAGAAAAGAAGCAATGAATAAGCGGCCCAGTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTGGTCTCTgtatgtcctcactgtgtcctgaattacatagaaggtctgttgcattcata Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgattaattttcttcctttttatagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGGAAAGAAAAGAAGCAATGAATAAGCGGCCCAGTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTGGTCTCTgtatgtcctcactgtgtcctgaattacatagaaggtctgttgcattcata #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATG-GCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg tgacagtggtgtcaccccagattttcataactcggtgatcgtctctttagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGCGCAT-AGGATTAAAAGCACTGATTGGTGGAGCTGTTggtaagtataacaggactagtaatgcaaatatcatgtaacaccagtgagga Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg tgacagtggtgtcaccccagattttcataactcggtgatcgtctctttagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGCGCATAGGATTAAAAGCACTGATTGGTGGAGCTGTTggtaagtataacaggactagtaatgcaaatatcatgtaacaccagtgagga Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG tgacagtggtgtcaccccagattttcataactcggtgatcgtctctttagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGCGCATAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtaagtataacaggactagtaatgcaaatatcatgtaacaccagtgagga Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG tgacagtggtgtcaccccagattttcataactcggtgatcgtctctttagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGCGCATAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtaagtataacaggactagtaatgcaaatatcatgtaacaccagtgagga Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG tgacagtggtgtcaccccagattttcataactcggtgatcgtctctttagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGCGCATAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtaagtataacaggactagtaatgcaaatatcatgtaacaccagtgagga Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG tgacagtggtgtcaccccagattttcataactcggtgatcgtctctttagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGCGCATAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtaagtataacaggactagtaatgcaaatatcatgtaacaccagtgagga Alignment from Exonerate_coding2genome tgacagtggtgtcaccccagattttcataactcggtgatcgtctctttagggggctatccaaggtcctgaggaatttgtagcaggaatgcgcataggattaaaagcactgattggtggagctgttggtaagtataacaggactagtaatgcaaatatcatgtaacaccagtgagga Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG tgacagtggtgtcaccccagattttcataactcggtgatcgtctctttagGGGGCTATCCAAGGTCCTGAGGAATTTGTAGCAGGAATGCGCATAGGATTAAAAGCACTGATTGGTGGAGCTGTTGgtaagtataacaggactagtaatgcaaatatcatgtaacaccagtgagga #### Vps13a_ID4067_56 --> 0 - 0 Original Alignment GTT---------CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAAT-TACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ttacaaaaacacactacaaccaaattgcgcttcattcctcgttgaaacagGTTCATTTAACACATCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACCTATCTTC-AGCACTAAAGATAGCATACAATACAGTAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgaggttgaaaatcgaacgaggacaagattgacattaacgggtgccaaa Alignment from CESAR GTTCGTTTAACA---------CCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ttacaaaaacacactacaaccaaattgcgcttcattcctcgttgaaacagGTTCATTTAACACATCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACCTATCTTCAGCACTAAAGATAGCATACAATACAGTAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgaggttgaaaatcgaacgaggacaagattgacattaacgggtgccaaa Alignment from Spaln_aa2Genome GTT---------CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ttacaaaaacacactacaaccaaattgcgcttcattcctcgttgaaacagGTTCATTTAACACATCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACCTATCTTCAGCACTAAAGATAGCATACAATACAGTAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgaggttgaaaatcgaacgaggacaagattgacattaacgggtgccaaa Alignment from Spaln_nt2Genome GTTCGTTTAACAC---------CTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ttacaaaaacacactacaaccaaattgcgcttcattcctcgttgaaacagGTTCATTTAACACATCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACCTATCTTCAGCACTAAAGATAGCATACAATACAGTAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgaggttgaaaatcgaacgaggacaagattgacattaacgggtgccaaa Alignment from Pairagon GTTCGTTTAACA---------CCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAA------TTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ttacaaaaacacactacaaccaaattgcgcttcattcctcgttgaaacagGTTCATTTAACACATCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACCTATCTT------CAGCACTAAAGATAGCATACAATACAGTAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgaggttgaaaatcgaacgaggacaagattgacattaacgggtgccaaa Alignment from Exonerate_protein2genome GTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ttacaaaaacacactacaaccaaattgcgcttcattcctcgttgaaacaggttcatttaacacATCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACCTATCTTCAGCACTAAAGATAGCATACAATACAGTAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgaggttgaaaatcgaacgaggacaagattgacattaacgggtgccaaa Alignment from Exonerate_coding2genome ttacaaaaacacactacaaccaaattgcgcttcattcctcgttgaaacaggttcatttaacacatctaacccctagtggcaatgatatgaggattttgcaaactcgccttatacctgtgcgtagaaacctatcttcagcactaaagatagcatacaatacagtagtacatcagtgggcatttcggattcagatttataggattcaggtgaggttgaaaatcgaacgaggacaagattgacattaacgggtgccaaa Alignment from GeneWise ---------GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ttacaaaaacacactacaaccaaattgcgcttcattcctcgttgaaacagGTTCATTTAACACATCTAACCCCTAGTGGCAATGATATGAGGATTTTGCAAACTCGCCTTATACCTGTGCGTAGAAACCTATCTTCAGCACTAAAGATAGCATACAATACAGTAGTACATCAGTGGGCATTTCGGATTCAGATTTATAGGATTCAGgtgaggttgaaaatcgaacgaggacaagattgacattaacgggtgccaaa #### Vps13a_ID4069_54 --> 0 - 2 Original Alignment GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACT-GAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAag attaagagtaggagaagaggttatgtagttgtctgcctgtctgtctctagGATATGATGACACCAATAAGTCTGGGTAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTCGAAGATCCAA-AGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAaggtaatgaccaacttatctcaaaagctagaacttctcaattaggcctcctc Alignment from CESAR GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAag attaagagtaggagaagaggttatgtagttgtctgcctgtctgtctctagGATATGATGACACCAATAAGTCTGGGTAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTCGAAGATCCAAAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAaggtaatgaccaacttatctcaaaagctagaacttctcaattaggcctcctc Alignment from Spaln_aa2Genome GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG attaagagtaggagaagaggttatgtagttgtctgcctgtctgtctctagGATATGATGACACCAATAAGTCTGGGTAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTCGAAGATCCAAAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtaatgaccaacttatctcaaaagctagaacttctcaattaggcctcctc Alignment from Spaln_nt2Genome GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG attaagagtaggagaagaggttatgtagttgtctgcctgtctgtctctagGATATGATGACACCAATAAGTCTGGGTAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTCGAAGATCCAAAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtaatgaccaacttatctcaaaagctagaacttctcaattaggcctcctc Alignment from Pairagon GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACT-GAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG attaagagtaggagaagaggttatgtagttgtctgcctgtctgtctctagGATATGATGACACCAATAAGTCTGGGTAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTCGAAGATCCAA-AGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtaatgaccaacttatctcaaaagctagaacttctcaattaggcctcctc Alignment from Exonerate_protein2genome GATGATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG attaagagtaggagaagaggttatgtagttgtctgcctgtctgtctctagGATATGATG---ACACCAATAAGTCTGGGTAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTCGAAGATCCAAAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtaatgaccaacttatctcaaaagctagaacttctcaattaggcctcctc Alignment from Exonerate_coding2genome attaagagtaggagaagaggttatgtagttgtctgcctgtctgtctctaggatatgatgacaccaataagtctgggtaaagagacaatttatttagtgtcattctttgaaggcctgcagcacattattttgttcactcgaagatccaaagtgtttaaagtaacgtatgaaagtgaaaaggcagagttagcagaactggaagttgtgctggcattacaggatgtcggaatttcacttgtcaataattatacaaagcaagaagcagcctacataggcattacaaggtaatgaccaacttatctcaaaagctagaacttctcaattaggcctcctc Alignment from GeneWise GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG attaagagtaggagaagaggttatgtagttgtctgcctgtctgtctctagGATATGATGACACCAATAAGTCTGGGTAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTCGAAGATCCAAAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtaatgaccaacttatctcaaaagctagaacttctcaattaggcctcctc #### Vps13a_ID4109_14 --> 0 - 0 Original Alignment GAGTTGGAGAAA-ACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG taggagttaggagggtcatatttatagagaaacatcttttctctgtacagGAATTGGAGAAACACTTTGGATG-TTTGAACATGCCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgtgctcaccctgtcatttaaatggtcatgagccattttatttcttctc Alignment from CESAR GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG taggagttaggagggtcatatttatagagaaacatcttttctctgtacagGAATTGGAGAAACACTTTGGATGTTTGAACATGCCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgtgctcaccctgtcatttaaatggtcatgagccattttatttcttctc Alignment from Spaln_aa2Genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG taggagttaggagggtcatatttatagagaaacatcttttctctgtacagGAATTGGAGAAACACTTTGGATGTTTGAACATGCCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgtgctcaccctgtcatttaaatggtcatgagccattttatttcttctc Alignment from Spaln_nt2Genome GAGTTGGAGAAA-ACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG taggagttaggagggtcatatttatagagaaacatcttttctctgtacagGAATTGGAGAAACACTTTGGATG-TTTGAACATGCCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgtgctcaccctgtcatttaaatggtcatgagccattttatttcttctc Alignment from Pairagon GAGTTGGAGAAA-ACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG taggagttaggagggtcatatttatagagaaacatcttttctctgtacagGAATTGGAGAAACACTTTGGATG-TTTGAACATGCCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgtgctcaccctgtcatttaaatggtcatgagccattttatttcttctc Alignment from Exonerate_protein2genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG taggagttaggagggtcatatttatagagaaacatcttttctctgtacagGAATTGGAGAAACACTTTGGATGTTTGAACATGCCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgtgctcaccctgtcatttaaatggtcatgagccattttatttcttctc Alignment from Exonerate_coding2genome taggagttaggagggtcatatttatagagaaacatcttttctctgtacaggaattggagaaacactttggatgtttgaacatgcctataagtagacagcaagcagaggttgaagtgtgctcaccctgtcatttaaatggtcatgagccattttatttcttctc Alignment from GeneWise GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG taggagttaggagggtcatatttatagagaaacatcttttctctgtacagGAATTGGAGAAACACTTTGGATGTTTGAACATGCCTATAAGTAGACAGCAAGCAGAGGTTGAAgtgtgctcaccctgtcatttaaatggtcatgagccattttatttcttctc #### Vwce_ID2953_8 --> 2 - 0 Original Alignment ctTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGA-GCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagctTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTCGCAGGGT-CTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from CESAR ctTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagctTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTCGCAGGGTCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Spaln_aa2Genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTCGCAGGGTCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Spaln_nt2Genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTCGCAGGGTCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Pairagon CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGG-AGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTCGCAGGGT-CTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Exonerate_protein2genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTCGCAGGGTCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTCGCAGGGTCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTGAAT-GGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagacTGTAATTTTGAAGGGAGAAAGGTAGTCAATCGGTCAGG-TTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagacTGTAATTTTGAAGGGAGAAAGGTAGTCAATCGGTCAGGTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATCGGTCAGGTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATCGGTCAGGTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAAT-GGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATCGGTCAGGT-TTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATCGGTCAGGTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Exonerate_coding2genome actgcctcttagactcccctgccctttccttctccatcttgcctccctagactgtaattttgaagggagaaaggtagtcaatcggtcaggtttcaccttagacgatgagccctgtacccgatgcatctgccaggcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGCTGGGAGAG---------------GTG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATCGGTCAGGTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGGCAGGAGAGAGAGGGAAGGAGCTTACAgtttgccctcatggacttacaga #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAG-CCTGTATTCAGGGCCAAAAAT agtctataatagactacaagtctataatgcttccgatgcctccaccctagCTTTTAGAACTCAAAGCAGGTCTAGGGGTGGGTAGAATGCACCAAGACTGCACACATACACATGTTGTTATTACATGCGGGAAGGAGAATGCCCTGAAAGTATGGGACTTACAGGGATCTGAGGAGCCCTGTGT-TAGGGCCAAAAATgtgaggctaggtaaagagaagtaatatatcatcaccaggtatctttatta Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT agtctataatagactacaagtctataatgcttccgatgcctccaccctagCTTTTAGAACTCAAAGCAGGTCTAGGGGTGGGTAGAATGCACCAAGACTGCACACATACACATGTTGTTATTACATGCGGGAAGGAGAATGCCCTGAAAGTATGGGACTTACAGGGATCTGAGGAGCCCTGTGTTAGGGCCAAAAATgtgaggctaggtaaagagaagtaatatatcatcaccaggtatctttatta Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT agtctataatagactacaagtctataatgcttccgatgcctccaccctagCTTTTAGAACTCAAAGCAGGTCTAGGGGTGGGTAGAATGCACCAAGACTGCACACATACACATGTTGTTATTACATGCGGGAAGGAGAATGCCCTGAAAGTATGGGACTTACAGGGATCTGAGGAGCCCTGTGTTAGGGCCAAAAATgtgaggctaggtaaagagaagtaatatatcatcaccaggtatctttatta Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT agtctataatagactacaagtctataatgcttccgatgcctccaccctagCTTTTAGAACTCAAAGCAGGTCTAGGGGTGGGTAGAATGCACCAAGACTGCACACATACACATGTTGTTATTACATGCGGGAAGGAGAATGCCCTGAAAGTATGGGACTTACAGGGATCTGAGGAGCCCTGTGTTAGGGCCAAAAATgtgaggctaggtaaagagaagtaatatatcatcaccaggtatctttatta Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT agtctataatagactacaagtctataatgcttccgatgcctccaccctagCTTTTAGAACTCAAAGCAGGTCTAGGGGTGGGTAGAATGCACCAAGACTGCACACATACACATGTTGTTATTACATGCGGGAAGGAGAATGCCCTGAAAGTATGGGACTTACAGGGATCTGAGGAGCCCTGTGTTAGGGCCAAAAATgtgaggctaggtaaagagaagtaatatatcatcaccaggtatctttatta Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT agtctataatagactacaagtctataatgcttccgatgcctccaccctagCTTTTAGAACTCAAAGCAGGTCTAGGGGTGGGTAGAATGCACCAAGACTGCACACATACACATGTTGTTATTACATGCGGGAAGGAGAATGCCCTGAAAGTATGGGACTTACAGGGATCTGAGGAGCCCTGTGTTAGGGCCAAAAATgtgaggctaggtaaagagaagtaatatatcatcaccaggtatctttatta Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT agtctataatagactacaagtctataatgcttccgatgcctccaccctagCTTTTAGAACTCAAAGCAGGTCTAGGGGTGGGTAGAATGCACCAAGACTGCACACATACACATGTTGTTATTACATGCGGGAAGGAGAATGCCCTGAAAGTATGGGACTTACAGGGATCTGAGGAGCCCTGTGTTAGGGCCAAAAATgtgaggctaggtaaagagaagtaatatatcatcaccaggtatctttatta Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT agtctataatagactacaagtctataatgcttccgatgcctccaccctagCTTTTAGAACTCAAAGCAGGTCTAGGGGTGGGTAGAATGCACCAAGACTGCACACATACACATGTTGTTATTACATGCGGGAAGGAGAATGCCCTGAAAGTATGGGACTTACAGGGATCTGAGGAGCCCTGTGTTAGGGCCAAAAATgtgaggctaggtaaagagaagtaatatatcatcaccaggtatctttatta #### Wdr96_ID10345_26 --> 0 - 0 Original Alignment ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGT-GTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaattaaagcctgtatccatgtgtctgctctatgcctgttgtagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGCTCGTACTCAAGG-AAAGACAGAGGACATCTTGAGAATGgtaccagtttctggaagtctttactgttgagggagagtcaagtaggttgt Alignment from CESAR ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaattaaagcctgtatccatgtgtctgctctatgcctgttgtagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGCTCGTACTCAAGGAAAGACAGAGGACATCTTGAGAATGgtaccagtttctggaagtctttactgttgagggagagtcaagtaggttgt Alignment from Spaln_aa2Genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaattaaagcctgtatccatgtgtctgctctatgcctgttgtagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGCTCGTACTCAAGGAAAGACAGAGGACATCTTGAGAATGgtaccagtttctggaagtctttactgttgagggagagtcaagtaggttgt Alignment from Spaln_nt2Genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaattaaagcctgtatccatgtgtctgctctatgcctgttgtagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGCTCGTACTCAAGGAAAGACAGAGGACATCTTGAGAATGgtaccagtttctggaagtctttactgttgagggagagtcaagtaggttgt Alignment from Pairagon ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGG------------AGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaattaaagcctgtatccatgtgtctgctctatgcctgttgtagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGCTCGTACTCAAGG------------AAAGACAGAGGACATCTTGAGAATGgtaccagtttctggaagtctttactgttgagggagagtcaagtaggttgt Alignment from Exonerate_protein2genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaattaaagcctgtatccatgtgtctgctctatgcctgttgtagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGCTCGTACTCAAGGAAAGACAGAGGACATCTTGAGAATGgtaccagtttctggaagtctttactgttgagggagagtcaagtaggttgt Alignment from Exonerate_coding2genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaattaaagcctgtatccatgtgtctgctctatgcctgttgtagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGCTCGTACTCAAGGAAAGACAGAGGACATCTTGAGAATGgtaccagtttctggaagtctttactgttgagggagagtcaagtaggttgt Alignment from GeneWise ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaattaaagcctgtatccatgtgtctgctctatgcctgttgtagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGCTCGTACTCAAGGAAAGACAGAGGACATCTTGAGAATGgtaccagtttctggaagtctttactgttgagggagagtcaagtaggttgt #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCA-GACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT gagttgacacacactgaatttttaattgcttcattttctcctgttttcaggcTCTAAGCATAGGACCCGGGCAGCTCCACGACCCTC-TCCACTATTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAACACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtatgtcacccagcaatgatgttcatacttttgcttctagCTACACCGTT Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT gagttgacacacactgaatttttaattgcttcattttctcctgttttcaggcTCTAAGCATAGGACCCGGGCAGCTCCACGACCCTCTCCACTATTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAACACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtatgtcacccagcaatggggctccttttcttccttctagCTACACCGTT Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT gagttgacacacactgaatttttaattgcttcattttctcctgttttcagGCTCTAAGCATAGGACCCGGGCAGCTCCACGACCCTCTCCACTATTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAACACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtatgtcacccagcaatgatgttcatacttttgcttctagCTACACCGTT Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT gagttgacacacactgaatttttaattgcttcattttctcctgttttcagGCTCTAAGCATAGGACCCGGGCAGCTCCACGACCCTCTCCACTATTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAACACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtatgtcacccagcaatgatgttcatacttttgcttctagCTACACCGTT Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT gagttgacacacactgaatttttaattgcttcattttctcctgttttcagGCTCTAAGCATAGGACCCGGGCAGCTCCACGACCCTCTCCACTATTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAACACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtatgtcacccagcaatgatgttcatacttttgcttctagCTACACCGTT Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT gagttgacacacactgaatttttaattgcttcattttctcctgttttcagGCTCTAAGCATAGGACCCGGGCAGCTCCACGACCCTCTCCACTATTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAACACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtatgtcacccagcaatgatgttcatacttttgcttctagCTACACCGTT Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT gagttgacacacactgaatttttaattgcttcattttctcctgttttcagGCTCTAAGCATAGGACCCGGGCAGCTCCACGACCCTCTCCACTATTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAACACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtatgtcacccagcaatgatgttcatacttttgcttctagCTACACCGTT Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTT ttgacacacactgaatttttaaTTGCTTCATTTTCTCCTG---TTTTCAGGCTCTAAGCATAGGACCCGGGCAGCTCCACGACCCTCTCCACTATTTGATGACACAAGTGGTGGGTATTCCATCCAACTGGGAGGGTACCCAACACCAGGAGCTGATGTGGCTTTCAGTGTCAATAACCTACTTGGAGACCCATTGGCTAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAGGGGAAGGACATTGTGCACAAAGAGgtatgtcacccagcaatgatgttcatacttttgcttctagCTACACCGTT #### Yif1a_ID831_3 --> 0 - 0 Original Alignment GCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGAC-ACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG GCACAAAGAGgtaagccacccagcaatggggctccttttcttccttctagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACCACAGCCT-TGTTGCTAAAAAGCTTGGACTCTTAGTCTTCCCATATACACATCAAgtaagtctgttctgtttgcagtggcgggcaggttgcacagtcacaacaga Alignment from CESAR GCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG GCACAAAGAGgtatgtcacccagcaatggggctccttttcttccttctagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACCACAGCCTTGTTGCTAAAAAGCTTGGACTCTTAGTCTTCCCATATACACATCAAgtaagtctgttctgtttgcagtggcgggcaggttgcacagtcacaacaga Alignment from Spaln_aa2Genome GCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG GCACAAAGAGgtaagccacccagcaatggggctccttttcttccttctagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACCACAGCCTTGTTGCTAAAAAGCTTGGACTCTTAGTCTTCCCATATACACATCAAgtaagtctgttctgtttgcagtggcgggcaggttgcacagtcacaacaga Alignment from Spaln_nt2Genome GCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG GCACAAAGAGgtaagccacccagcaatggggctccttttcttccttctagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACCACAGCCTTGTTGCTAAAAAGCTTGGACTCTTAGTCTTCCCATATACACATCAAgtaagtctgttctgtttgcagtggcgggcaggttgcacagtcacaacaga Alignment from Pairagon GCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGA-CACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG GCACAAAGAGgtaagccacccagcaatggggctccttttcttccttctagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACCACAGCCT-TGTTGCTAAAAAGCTTGGACTCTTAGTCTTCCCATATACACATCAAgtaagtctgttctgtttgcagtggcgggcaggttgcacagtcacaacaga Alignment from Exonerate_protein2genome GCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG GCACAAAGAGgtaagccacccagcaatggggctccttttcttccttctagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACCACAGCCTTGTTGCTAAAAAGCTTGGACTCTTAGTCTTCCCATATACACATCAAgtaagtctgttctgtttgcagtggcgggcaggttgcacagtcacaacaga Alignment from Exonerate_coding2genome GCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG GCACAAAGAGgtaagccacccagcaatggggctccttttcttccttctagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACCACAGCCTTGTTGCTAAAAAGCTTGGACTCTTAGTCTTCCCATATACACATCAAgtaagtctgttctgtttgcagtggcgggcaggttgcacagtcacaacaga Alignment from GeneWise GCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG GCACAAAGAGgtaagccacccagcaatggggctccttttcttccttctagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACCACAGCCTTGTTGCTAAAAAGCTTGGACTCTTAGTCTTCCCATATACACATCAAgtaagtctgttctgtttgcagtggcgggcaggttgcacagtcacaacaga #### Yif1a_ID833_5 --> 2 - 2 Original Alignment ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATG-GCGCTAGGCATTCAGCAAag gtgggagatcctctcgtgggaagacaacttttttttttttttttttttaggcATGGCTTTTATCACAGATGTGCTAAGGGCTGAGATGCGCAT-TGGCATTCAGCAGaagtaatgcttcagcagctcttacctgatatctatttaagccaggttttcta Alignment from CESAR ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag gtgggagatcctctcgtgggaagacaacttttttttttttttttttttaggcATGGCTTTTATCACAGATGTGCTAAGGGCTGAGATGCGCATTGGCATTCAGCAGaagtaatgcttcagcagctcttacctgatatctatttaagccaggttttcta Alignment from Spaln_aa2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggagatcctctcgtgggaagacaacttttttttttttttttttttagGCATGGCTTTTATCACAGATGTGCTAAGGGCTGAGATGCGCATTGGCATTCAGCAGAAgtaatgcttcagcagctcttacctgatatctatttaagccaggttttcta Alignment from Spaln_nt2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggagatcctctcgtgggaagacaacttttttttttttttttttttagGCATGGCTTTTATCACAGATGTGCTAAGGGCTGAGATGCGCATTGGCATTCAGCAGAAgtaatgcttcagcagctcttacctgatatctatttaagccaggttttcta Alignment from Pairagon CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggagatcctctcgtgggaagacaacttttttttttttttttttttagGCATGGCTTTTATCACAGATGTGCTAAGGGCTGAGATGCGCATTGGCATTCAGCAGAAgtaatgcttcagcagctcttacctgatatctatttaagccaggttttcta Alignment from Exonerate_protein2genome gtgggagatcctctcgtgggaagacaacttttttttttttttttttttaggcatggcttttatcacagatgtgctaagggctgagatgcgcattggcattcagcagaagtaatgcttcagcagctcttacctgatatctatttaagccaggttttcta Alignment from Exonerate_coding2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggagatcctctcgtgggaagacaacttttttttttttttttttttagGCATGGCTTTTATCACAGATGTGCTAAGGGCTGAGATGCGCATTGGCATTCAGCAGAAgtaatgcttcagcagctcttacctgatatctatttaagccaggttttcta Alignment from GeneWise CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggagatcctctcgtgggaagacaacttttttttttttttttttttagGCATGGCTTTTATCACAGATGTGCTAAGGGCTGAGATGCGCATTGGCATTCAGCAGAAgtaatgcttcagcagctcttacctgatatctatttaagccaggttttcta #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGG-CATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG ctttttaggttgaagttattcccactgattagccttcatctcattcccagtTCTGTGGCCTTGGCTCTGGGTGCACTTACCATGTGGCATGCTTTCCTGATTAGTCGGGGCAGGACTAGCATCGAAAGGCCATATCAACA-GAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaaatggccatggaggctacacagcactcatggaatgcaggagggggct Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG ctttttaggttgaagttattcccactgattagccttcatctcattcccagtTCTGTGGCCTTGGCTCTGGGTGCACTTACCATGTGGCATGCTTTCCTGATTAGTCGGGGCAGGACTAGCATCGAAAGGCCATATCAACAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaaatggccatggaggctacacagcactcatggaatgcaggagggggct Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG ctttttaggttgaagttattcccactgattagccttcatctcattcccagTTCTGTGGCCTTGGCTCTGGGTGCACTTACCATGTGGCATGCTTTCCTGATTAGTCGGGGCAGGACTAGCATCGAAAGGCCATATCAACAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaaatggccatggaggctacacagcactcatggaatgcaggagggggct Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG ctttttaggttgaagttattcccactgattagccttcatctcattcccagTTCTGTGGCCTTGGCTCTGGGTGCACTTACCATGTGGCATGCTTTCCTGATTAGTCGGGGCAGGACTAGCATCGAAAGGCCATATCAACAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaaatggccatggaggctacacagcactcatggaatgcaggagggggct Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGG-CATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG ctttttaggttgaagttattcccactgattagccttcatctcattcccagTTCTGTGGCCTTGGCTCTGGGTGCACTTACCATGTGGCATGCTTTCCTGATTAGTCGGGGCAGGACTAGCATCGAAAGGCCATATCAAC-AGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaaatggccatggaggctacacagcactcatggaatgcaggagggggct Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG ctttttaggttgaagttattcccactgattagccttcatctcattcccagTTCTGTGGCCTTGGCTCTGGGTGCACTTACCATGTGGCATGCTTTCCTGATTAGTCGGGGCAGGACTAGCATCGAAAGGCCATATCAACAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaaatggccatggaggctacacagcactcatggaatgcaggagggggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG ctttttaggttgaagttattcccactgattagccttcatctcattcccagTTCTGTGGCCTTGGCTCTGGGTGCACTTACCATGTGGCATGCTTTCCTGATTAGTCGGGGCAGGACTAGCATCGAAAGGCCATATCAACAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaaatggccatggaggctacacagcactcatggaatgcaggagggggct #### Zdhhc6_ID11620_9 --> 1 - 1 Original Alignment aTACTGGTTGTATGGAGACAAAATTCTT-GATGATTCCTTCATAGAAg gagggggttctttatctgtaaactaaaaccaatgcctctgtttcctacagaTACTGGTTGTATGGAGACAAAATTCTGCGACG-TTCTTTCAGAGAAggtacgagggtgtatgatatgttgtgattgggtgtagtgcatcttccactg Alignment from CESAR aTACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAg gagggggttctttatctgtaaactaaaaccaatgcctctgtttcctacagaTACTGGTTGTATGGAGACAAAATTCTGCGACGTTCTTTCAGAGAAggtacgagggtgtatgatatgttgtgattgggtgtagtgcatcttccactg Alignment from Spaln_aa2Genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctgtaaactaaaaccaatgcctctgtttcctacagATACTGGTTGTATGGAGACAAAATTCTGCGACGTTCTTTCAGAGAAGgtacgagggtgtatgatatgttgtgattgggtgtagtgcatcttccactg Alignment from Spaln_nt2Genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctgtaaactaaaaccaatgcctctgtttcctacagATACTGGTTGTATGGAGACAAAATTCTGCGACGTTCTTTCAGAGAAGgtacgagggtgtatgatatgttgtgattgggtgtagtgcatcttccactg Alignment from Pairagon ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctgtaaactaaaaccaatgcctctgtttcctacagATACTGGTTGTATGGAGACAAAATTCTGCGACGTTCTTTCAGAGAAGgtacgagggtgtatgatatgttgtgattgggtgtagtgcatcttccactg Alignment from Exonerate_protein2genome ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctgtaaactaaaaccaatgcctctgtttcctacagATACTGGTTGTATGGAGACAAAATTCTGCGACGTTCTTTCAGAGAAGgtacgagggtgtatgatatgttgtgattgggtgtagtgcatcttccactg Alignment from Exonerate_coding2genome CTGCGATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAG gagggggttctttatctgtaaactaaaaccaatgcctctgtttcctacagA-----TACTGGTTGTATGGAGACAAAATTCTGCGACGTTCTTTCAGAGAAGgtacgagggtgtatgatatgttgtgattgggtgtagtgcatcttccactg Alignment from GeneWise ATACTGGTTGTATGGAGACAAAATTCTTGATGATTCCTTCATAGAAGGTACTTCAAG gagggggttctttatctgtaaactaaaaccaatgcctctgtttcctacagATACTGGTTGTATGGAGACAAAATTCTGCGACGTTCTTTCAGAGAAGGTACGAGGGTgtatgatatgttgtgattgggtgtagtgcatcttccactg #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCT-ACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ggtgtgtttaataagggagatcaatcagagcttcattttccttctcgcaggaACAGCCAGTGGCTCTAATAGTCCCCACGT-AGATGCCGCATCAGCTCAGGAACCAGATGCGGGATTGAATAACTGTGAAGGTGCCACTGGTAGTACTTCTGACAAATCAaggtacgtagggcactttaattttctagtctccacttctaagccttctttcc Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ggtgtgtttaataagggagatcaatcagagcttcattttccttctcgcaggaACAGCCAGTGGCTCTAATAGTCCCCACGTAGATGCCGCATCAGCTCAGGAACCAGATGCGGGATTGAATAACTGTGAAGGTGCCACTGGTAGTACTTCTGACAAATCAaggtacgtagggcactttaattttctagtctccacttctaagccttctttcc Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ggtgtgtttaataagggagatcaatcagagcttcattttccttctcgcagGAACAGCCAGTGGCTCTAATAGTCCCCACGTAGATGCCGCATCAGCTCAGGAACCAGATGCGGGATTGAATAACTGTGAAGGTGCCACTGGTAGTACTTCTGACAAATCAAGgtacgtagggcactttaattttctagtctccacttctaagccttctttcc Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ggtgtgtttaataagggagatcaatcagagcttcattttccttctcgcagGAACAGCCAGTGGCTCTAATAGTCCCCACGTAGATGCCGCATCAGCTCAGGAACCAGATGCGGGATTGAATAACTGTGAAGGTGCCACTGGTAGTACTTCTGACAAATCAAGgtacgtagggcactttaattttctagtctccacttctaagccttctttcc Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ggtgtgtttaataagggagatcaatcagagcttcattttccttctcgcagGAACAGCCAGTGGCTCTAATAGTCCCCACGTAGATGCCGCATCAGCTCAGGAACCAGATGCGGGATTGAATAACTGTGAAGGTGCCACTGGTAGTACTTCTGACAAATCAAGgtacgtagggcactttaattttctagtctccacttctaagccttctttcc Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ggtgtgtttaataagggagatcaatcagagcttcattttccttctcgcagGAACAGCCAGTGGCTCTAATAGTCCCCACGTAGATGCCGCATCAGCTCAGGAACCAGATGCGGGATTGAATAACTGTGAAGGTGCCACTGGTAGTACTTCTGACAAATCAAGgtacgtagggcactttaattttctagtctccacttctaagccttctttcc Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ggtgtgtttaataagggagatcaatcagagcttcattttccttctcgcagGAACAGCCAGTGGCTCTAATAGTCCCCACGTAGATGCCGCATCAGCTCAGGAACCAGATGCGGGATTGAATAACTGTGAAGGTGCCACTGGTAGTACTTCTGACAAATCAAGgtacgtagggcactttaattttctagtctccacttctaagccttctttcc Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ggtgtgtttaataagggagatcaatcagagcttcattttccttctcgcagGAACAGCCAGTGGCTCTAATAGTCCCCACGTAGATGCCGCATCAGCTCAGGAACCAGATGCGGGATTGAATAACTGTGAAGGTGCCACTGGTAGTACTTCTGACAAATCAAGgtacgtagggcactttaattttctagtctccacttctaagccttctttcc #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTag atagaagttgaattttgggcagtgaatgatataattattttcttttctagatGTTACTGAAGAGCAACCGAA-CCCTGGTGGGACCaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag atagaagttgaattttgggcagtgaatgatataattattttcttttctagatGTTACTGAAGAGCAACCGAACCCTGGTGGGACCaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaagttgaattttgggcagtgaatgatataattattttcttttctagATGTTACTGAAGAGCAACCGAACCCTGGTGGGACCAGgtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaagttgaattttgggcagtgaatgatataattattttcttttctagATGTTACTGAAGAGCAACCGAACCCTGGTGGGACCAGgtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaagttgaattttgggcagtgaatgatataattattttcttttctagATGTTACTGAAGAGCAACCGAACCCTGGTGGGACCAGgtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Exonerate_protein2genome atagaagttgaattttgggcagtgaatgatataattattttcttttctagatgttactgaagagcaaccgaaccctggtgggaccaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Exonerate_coding2genome atagaagttgaattttgggcagtgaatgatataattattttcttttctagatgttactgaagagcaaccgaaccctggtgggaccaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from GeneWise atagaagttgaattttgggcagtgaatgatataattattttcttttctagatgttactgaagagcaaccgaaccctggtgggaccaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGT-TGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtctatatggtccacaggtcacaccccttgcctgtgtttcctttctgtagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCACTGCCTGCT-ATTCAAGGTACCCCGCTCCTCCATGGGTGCCACAagtgaggggaaagttttgacaatcaagcacaatctgaaaatgtccaatgtt Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtctatatggtccacaggtcacaccccttgcctgtgtttcctttctgtagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCACTGCCTGCTATTCAAGGTACCCCGCTCCTCCATGGGTGCCACAagtgaggggaaagttttgacaatcaagcacaatctgaaaatgtccaatgtt Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtcacaccccttgcctgtgtttcctttctgtagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCACTGCCTGCTATTCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgaggggaaagttttgacaatcaagcacaatctgaaaatgtccaatgtt Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtcacaccccttgcctgtgtttcctttctgtagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCACTGCCTGCTATTCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgaggggaaagttttgacaatcaagcacaatctgaaaatgtccaatgtt Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTC----------CTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtcacaccccttgcctgtgtttcctttctgtagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCT----------CTCACTGCCTGCTATTCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgaggggaaagttttgacaatcaagcacaatctgaaaatgtccaatgtt Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtcacaccccttgcctgtgtttcctttctgtagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCACTGCCTGCTATTCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgaggggaaagttttgacaatcaagcacaatctgaaaatgtccaatgtt Alignment from Exonerate_coding2genome gtctatatggtccacaggtcacaccccttgcctgtgtttcctttctgtagcgaagctgcactaactgtgcaaatagcttctgctctcactgcctgctattcaaggtaccccgctcctccatgggtgccacaagtgaggggaaagttttgacaatcaagcacaatctgaaaatgtccaatgtt Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtctatatggtccacaggtcacaccccttgcctgtgtttcctttctgtagCGAAGCTGCACTAACTGTGCAAATAGCTTCTGCTCTCACTGCCTGCTATTCAAGGTACCCCGCTCCTCCATGGGTGCCACAAgtgaggggaaagttttgacaatcaagcacaatctgaaaatgtccaatgtt ####